dgr_264

Name	Class	Family	Strand
(CCG)n	Simple_repeat	Simple_repeat	+

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------################################################## TCACTGCATTCCATGACTACTTGCAACACAATGCACAACGATTAAAACAACAACAACAATACAACAAAAAACCCAACATCCAACCTTATCTTGCAGTGAGCTATCCACCCTTGCGGACACCCTACAAATTGCCACAATCCGTCGCTGGCCAGCCGCTGAAGACCAGCAGCAGCAGCAGCGGCGGCGTTGGCGGTACATCAGTAGCAACAGTTGGTGGCGCAACGGCAGCTGCGGCTGCTGCTTCAGCTGGT *******************************************************************************************************************************..............((((....((.((((.....)))).))..)))).************************************************************************	Read size	Hit Count	Total Norm	Total	M041 female body
.................................................................................................................................TGCCACAATCCGTCGCTGGCC.....................................................................................................	21	1	1.00	1	1
..............................................................................................................................................................AAGACCAGCAGCAGCAGCA..........................................................................	19	7	0.14	1	1
...............................................................................................................................................................AGACCAGCAGCAGCAGCAG.........................................................................	19	8	0.13	1	1
...............................................................................................................................................................AGACCAGCAGCAGCAGCA..........................................................................	18	12	0.08	1	1
......................................................................................................................................................................CAGCAGCAGCAGCGGCGGC..................................................................	19	20	0.05	1	1

AGTGACGTAAGGTACTGATGAACGTTGTGTTACGTGTTGCTAATTTTGTTGTTGTTGTTATGTTGTTTTTTGGGTTGTAGGTTGGAATAGAACGTCACTCGATAGGTGGGAACGCCTGTGGGATGTTTAACGGTGTTAGGCAGCGACCGGTCGGCGACTTCTGGTCGTCGTCGTCGTCGCCGCCGCAACCGCCATGTAGTCATCGTTGTCAACCACCGCGTTGCCGTCGACGCCGACGACGAAGTCGACCA ************************************************************************..............((((....((.((((.....)))).))..)))).*******************************************************************************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M041 female body
.........................................................................................GAACGTTACTAGATAGGGG...............................................................................................................................................	19	3	15	0.07	1	1
....................................................................................................GATAGTCTGGAACGCCTG.....................................................................................................................................	18	3	20	0.05	1	1
.......TAAGGTACTGAGGACCGC..................................................................................................................................................................................................................................	18	3	20	0.05	1	1

Species	Coordinate	ID	Alignment
droGri2	scaffold_15081:2758962-2759212 -	dgr_264	TCACTGCATTCCA--TG------------------------------------------ACT-----------ACTTG-------CAACACAAT----G---------------------------CACAACGATTAA----A-ACAACAACAACA-ATAC-------------------------------------------------AA--CAAAAAACC----CAA-----CA-------------------------------------TCC-A-ACCTTATCTTGCAGTGAGCTATCCA------------CCCTTGCGGAC-------------------------------ACCCTACAAATT---------------GCCACAAT---------CCGTCGCTGGCCAGC-CGCTGAAGACCAGCAGCAGCA--------------------GCAGCGGCGGC----------------------------------GTTGGCG---------------------------------------------------GTA---------CATCAGTA----------------------GCAACAGTTG------GTGGCGCA------------AC---------------GGCAGCTGCGGCTGCTGCTTCAGCTGGT
droVir3	scaffold_12928:4903504-4903740 +		TCCATGCATTCCA--TC------------------------------------------TCTTTTGCACACGCA-------------------------------------CACCAA------AAACAAC----------------AACAACAACAAATATAAC------ACAAACAA-----------------------------------------A----------AACAAAA-------------------------------------CA----CACTTGTCTTGCAGTGAGCTATGCGGGCGCTGCCACGCCCATGCGTGC-------------------------------ACCGTACAAGCTGCCGCCGGGCAGCATGCCACAAA---------GCGCTGCC-GCCAGCG---------------------------------------------C-------------------------A--------------GTCAAGAGTAGC--------------------------------------------A------------------GCA----------------------GCAGCAG-CAG------CGGCGCAACGGCA------AC------------AGCTGCA---------GC---AGCAGC--GG
droMoj3	scaffold_6473:113753-113998 -		TCTCTGTCTTTCA-------------------------------------------------------CACGCACTCG-------AATTGC-----------AACCACATCAATCAA------TCACATCAACATCCG----AAACG---------------AT------CGACATAA------------------------------------AAACAAAC-----CCG-----AT-------------------------------------TCCCCACACTTGTCTTGCAGTGAGCTATGCGGGCGGTGCCACGCCCATGCGTAC-------------------------------GCCGTTCAAGCCGCAGCCGGTGGGCATGGCAGCAG---------GTGTTGCT-GCC------------------------------------------------------------------------------------------AGCGCCA---------------------------------------------------------------CACT------------------GAAGAGCAGCAGC----GCCGTTGGCGGTGCC------------ACGC----------CCCAGG---------------TGGCGGCCAC
droWil2	scf2_1100000004590:4306598-4306842 +		CCTCTCCATA---------------AACATA------------------------------------------------------------------------AACAAAACAATAAA----AACTACATAAAC-------------------------------------------------AC--TTA------ACACAATCA----------CCACCTACACCTGCCA-----AA-------------------------------------TC----TCCTTATATTGCAGTGAGCTATGCAAAT---GCCACGCCTATGCGGCCCTA---CATGATGACAACAAAACC-AACGACA----------------------------------ACGCCAAAAATAATCAT-GCCCGC-A---GG--AGCATCAT------------------------------------------------------------------------CGGCAGCA--------------------------------------GCATCAGCAGCAG---------CA---GCA----------------------GCAGCAGCAG------GAGGAGCA------------TC------------AACAGCA---------------ACAGCTGGA
dp5	XL_group1e:10153003-10153286 +		TTCAAT----GCATATCTCTCCCTGAACATTCCA----------------------------------CAT------GCCACATGCACCACATACAAC---------------------------------------A----A-ACA-------------------------------------ATCGACCAACA--------AATGACATTTGCAACCAAC-----AAAACTCGAAACCTACACGAAACATCCTGTTTTTTTTCCCTCCCGTTCCT---TGCGTCTCTTGCAGTGAGCTATGCCGGCGGCGCTGCA--------------------------------------------------------------------------------------------------------------------------------GGTCCAGGTGCAGGTGGTGTTGCCCTGCCGGTGGTGCGTCCCTTCAAGGGAGCAGTTTCCAAGGTGGCC------ATGCCACCAGCGAGCGCC-------------------------------------------------------------------------------------------------------ACAG---------CAGCCGCA---------------GCAGCAGGA
droPer2	scaffold_22:74741-75019 -	dpe_1170	TTCAAT----GCATATCTCTCCCTGAACATTCCA----------------------------------CAT------GCCACATGCACCACATACAAC---------------------------------------A----A-ACA-------------------------------------ATCGACCAACA--------AATGACATTTGCAACCAAC-----AAAACTCGAAACCTACACGAAACATCCT--TTTTTTTCCCTCCCGTTCCT---TGCGTCTCTTGCAGTGAGCTATGCCGGCGGCGCTGCA--------------------------------------------------------------------------------------------------------------------------------GGTCAAGGTGCAGGTGGTGTTGCCCTGCCGGTGGTGCGTCCCTTCAAGGGAGCTGTTTCCAAGGTGGCC------ATGCCACCAGCGAGCGCC-------------------------------------------------------------------------------------------------------AC------------AGCTGCA---------------GCAGCAGGA
droAna3	scaffold_13117:2410445-2410668 -		TCTCTGGT-GCTA--TC------------------------------------------TCT-----------T------------------------------------------G------CTCCCTCACTTTCCCGCCGAAACA------AAG-ACAA-------------------------------------------------AT--CGACCAAC-----CCG-----AC-------------------------------------TCC---CCTTTTACTTGCAGTGAGCTATGCGGGCGCCGCCTCGCCCATCCGCCCCTA---CAAGGTGACCCCCA-------------------------------CGGGCCTCC-AGAAG---------ATG--GCA-C------------------------------------------------------------------------------------CCGC--------------------------CACC----------------------------------------------ACAGTGGCCACCACCAAAGGAGCGCCTG----GCTCAGGAGCGGTCAGC---------------GGGG---------CAACCGGA-------------------GCTGC
droBip1	scf7180000396696:713607-713818 +		TCTCTTTA----G--------------------------------------------------------------TTG-------GAAGACCAT----A-------------------------CACCTTGCTCTC------T-CTAATGCCAGAA-TCGT-------------------------------------------------AA--CCACCAACC----ACG-----CC-------------------------------------TCC---CGTTTCCATTGCAGTGAGCTATGCCGG---AGCCCAGCCGATGCGCCCCTT---CAAGGTGACCGCCA-------------------------------CGGGCCTCC-AGAAG---------ATG--ACT-C------------------------------------------------------------------------------------------CCAGCGCCGC--------------CA----------------------------------------------CAACAGTG----------------------GCCACCACC---------------------------GCGGCGGCTTCAGGACCGGG---------------AGCAGTTAGT
droKik1	scf7180000302471:587260-587401 +		TGCGGGCACC----ACCG-CC-----------------------GCGGTGCTGGCC-------------TCGCT-------------------------------------GACCAA------CAAGAAC----------------ATCAGCAGCA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAGCAACAGCAGCGGC------------------------------------------------------AGTGGTG---------------------------------------------------GCAGCGTCGCCACAAC------------------GGCGGGTA----GCGCCGGCGGTGCAGGTGCG------------GG------------AGCTGG---------------CACTGGCGGC
droFic1	scf7180000454050:1056101-1056359 -		ACGACACG---CA----------------------------------------------------------------------------------------------TATTAATTAA------CCACATCATTATCCATG--A-ACA---------------AC------CGACACAAAACA--CTC-----CGAACT---GAACC-----T--CAACCAAC-----CCGAATCGAA-------------------------------------TC----CCTTTGCCTTCCAGTGAGTTATGCAGGCGGAGTGTCGCCCATTCGTCCCTT---TAAGGTTGCCGG---------C--------------------------------------------------------------G---------------------------------------------G-------------------------A-----GTC------GTTGGGAGTGGCCAGAAGT---CCCCGATGGCCACATCAGCCGGGGGAGGAGCTGGAGGAG---------CAGCAGGA----------------------GCGGGAATCG------GAGGA---------------GC------------AGCAGCA---------------GGAGCCGCT
droEle1	scf7180000491043:57738-57931 +		TTAATGTTC--CA-------------------------------------------------------TTT------GCAATCCAA---------------------------------------ACATTACAATCCA----A-ACA-----------------------------------AC--CGA------CCGCAAAAATCGGCAAT--CAACCAAC-----CCGAATCGAA-------------------------------------TC----CCTTTACCTTGCAGTGAGCTATGCGGGCGGAGTGCCACCCATTCGGCCGTTCGTTAAGGTAGCCGG---------C--------------------------------------------------------------G---------------------------------------------C-------------------------A--------------ATCGGGAGCAGCCAGAAGC---CGCCGGTGGCCACATCC----------------------------------------------------------------------------------------------------------------------------------------GCTGGA
droRho1	scf7180000779333:867160-867366 -		TCACTCAC-----------------------------------CTCGGTGTCATGT-----------------ACT---------------------------------TTAATTTA------CTACATCATAATCCG----A-ACAACAA-----------------CA------------AC--CGA------CCGCATAAACC-----G--GAACCAAC-----CCG-----AA-------------------------------------TC----CCTTTACCTTGCAGTGAGTTATGCGGGCGGAGTACCACCCATTCGCCCTTT---TAAGGTGGCTGG---------C--------------------------------------------------------------G---------------------------------------------C-------------------------A--------------ATGGGGAACAGCCAGAAGC---CATCGGTGGCCACATCCG---------------------------------------------------------------------------------------------------------------CCGGG----------------AGCGCTGGA
droBia1	scf7180000302421:1620303-1620541 -		TCCATT----CGATGTCCTCCCGCGCACACCCCTCTCACTCACTCCGGTGTC--------------------------------------C----AATATACAAACATATCAACTAA------CCACATCATTATCCG----A-ACAA--------------AC------CGACGCAA------------------------AACC-----A--CAACCAAC-----CCG-----AA-------------------------------------TC----CCTTTGCCTTCCAGTGAGTTACGGGGGCGGAGTGGCGCCCATTCGCGCCAT---CAAGATGGCCGGAGCTCCTGGC--------------------------------------------------------------G---------------------------------------------G-------------------------G--------------ATCGGGAACAACCAGAAGC---CGCCGATTGCCACCACA----------------------------------------------------------------------------------------------------------------------------------------GCCGCA
droTak1	scf7180000414113:13321-13551 -		TCCATT----CGATGTCTGCCC-----------TCTCACTCACTCCGGTGAC--------------------------------------C----GGTGTTTA----AATGAATTAACCCCAACCCGAATAATATCCA----A-ACG---------------AC------CTACCCAA-----------------------------------------A----------ACCGAAA-------------------------------------AC----CCTTTACCTTGCAGTGAGTTATGCGGGCGGAGTTCAGCCCATTCGCGCCTT---CAAGATGGCCGGAAATACAGGA--------------------------------------------------------------G---------------------------------------------G-------------------------A--GGAATC------GTTGGCAGCAACCAGAAGC---CACCGATGGCCACGACC-------------------------------------------------------------------------------------------------------------------GCA---------------GGAAGCGGA
droEug1	scf7180000409470:172874-173003 -		CTTGCAGA----A-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGAGCCGCCAA------------CACCAGCGG--------------------------------CA----------------------------------CCATCAC---------C-ACCTGC-C---GC--CGCATCAG------------------------------------------------------------------------CAACAGCA--------------------------------------GCAGCAGATGCCA---------CAGCAGCA----------------------GCAACAGTTG------ACGCC---------------GC------------AGCAGCAGCAGCAACATC---AGCTTCTAAT
dm3	chrX:13094833-13095026 -		GTCGTGTATA-------------------------------------------------CCT-----------AATT----------------------------------ACCGAA------CCACATCATTATCCA----AAACA-----------------------------------AC--TTG------CTGCAAAAACA-----A--CAACCAAC-----CCG-----AA-------------------------------------TC----CCTTTACCTTCCAGTGAGTTATGCAGGCGGAGCTTCCCAAATTCGCGCCTT---AAAGGTAGCCGGAAATATTGGC--------------------------------------------------------------G---------------------------------------------G-------------------------A--------------GTCGGGAATAATCAGAAGCCGCCACCAATAGCCACAACT----------------------------------------------------------------------------------------------------------------------------------------CCC--G
droSim2	3l:5601944-5602043 +		CAGCGGCA----A------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAGTGGTGCGATCGGTGGTGCA--------------------------------------------------------------------------------------------------------------------------------CCGCCATCTCTTAGTGGTGGTG------------------------------------------------------------------------------------------------------------------------------------------GCAGT-GTTGG------TGGTGCGGCTGCAGGCGATCC------------TGCGGG---------------TCCGGGAGGC
droSec2	scaffold_1:7895030-7895110 +		CGCTGA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A----------------------------------------------------------------------------------------------------------------------------------CCAGCAGCCGCA-----GCAACAGTT---------------------------------------------------GCTGGCG---------------------------------------------------CAA---------CAACAGCA----------------------GCAACAGTTG------CAGGCGCA------------ACAG---------CAGCAGC-------------------AGCAGC
droYak3	X:7365332-7365546 -		GGTGTATGTCGTG------------------------------------------TATGCCT-----------AATT-----------------AACC---------AACCAACTAA------CCACAACATTATCCA----A-ACA---------------ACCAAACA------------AC--TTG------CTGCGAAAACC-----A--CAACCAAC-----CCG-----AA-------------------------------------TC----CCTTTACCTTCCAGTGAGTTATGCGGGCGGAGCTGCTCCAATTCGCGCCTT---TAAGGTGGCCGGAAATGTTGGC--------------------------------------------------------------G---------------------------------------------G-------------------------C--------------ATCGGGAACAATCAGAAGC---CATCAATGGCCACATCC----------------------------------------------------------------------------------------------------------------------------------------GCCAGT
droEre2	scaffold_4690:13781170-13781184 +		GCCACAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CC----------------------------------------------------------------------------------------------------------------------------------------GCCGTT

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droGri2

TCACTGCATTCCA--TG------------------------------------------ACT-----------ACTTG-------CAACACAAT----G---------------------------CACAACGATTAA----A-ACAACAACAACA-ATAC-------------------------------------------------AA--CAAAAAACC----CAA-----CA-------------------------------------TCC-A-ACCTTATCTTGCAGTGAGCTATCCA------------CCCTTGCGGAC-------------------------------ACCCTACAAATT---------------GCCACAAT---------CCGTCGCTGGCCAGC-CGCTGAAGACCAGCAGCAGCA--------------------GCAGCGGCGGC----------------------------------GTTGGCG---------------------------------------------------GTA---------CATCAGTA----------------------GCAACAGTTG------GTGGCGCA------------AC---------------GGCAGCTGCGGCTGCTGCTTCAGCTGGT	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
..................................................................................................................................................................................................................................................................................................................................................................................T---------------GCCACAAT---------CCGTCGCTGGCC...............................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................AAGACCAGCAGCAGCA--------------------GCA...............................................................................................................................................................................................................................	19	7	0.14	1	1	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................AGACCAGCAGCAGCA--------------------GCAG..............................................................................................................................................................................................................................	19	8	0.13	1	1	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................AGACCAGCAGCAGCA--------------------GCA...............................................................................................................................................................................................................................	18	12	0.08	1	1	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGCA--------------------GCAGCGGCGGC----------------------------------.....................................................................................................................................................................................	19	20	0.05	1	1	0

droVir3

TCCATGCATTCCA--TC------------------------------------------TCTTTTGCACACGCA-------------------------------------CACCAA------AAACAAC----------------AACAACAACAAATATAAC------ACAAACAA-----------------------------------------A----------AACAAAA-------------------------------------CA----CACTTGTCTTGCAGTGAGCTATGCGGGCGCTGCCACGCCCATGCGTGC-------------------------------ACCGTACAAGCTGCCGCCGGGCAGCATGCCACAAA---------GCGCTGCC-GCCAGCG---------------------------------------------C-------------------------A--------------GTCAAGAGTAGC--------------------------------------------A------------------GCA----------------------GCAGCAG-CAG------CGGCGCAACGGCA------AC------------AGCTGCA---------GC---AGCAGC--GG	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
...........................................................................................................................AAACAAC----------------AACAACAACAAATATAAC------A...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	2	2.50	5	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................AACAAC----------------AACAACAACAAATATAAC------A...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	2	1.50	3	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................AAC----------------AACAACAACAAATATAAC------A...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	2	1.50	3	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................CGCTGCCACGCCCATGCGTGC-------------------------------ACCGTA.................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAG-CAG------CGGCGCAACGGCA------AC------------...............................	22	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................AAC----------------AACAACAACAAATATAAC------....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	2	1.00	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAG-CAG------CGGCGCAACGGCA------AC------------A..............................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................GAGCTATGCGGGCGCTGCCAC..................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAG-CAG------CGGCGCAACGGCA------AC------------A..............................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................GTACAAGCTGCCGCCGGG..................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................TGCCGCCGGGCAGCATGCCACAA.....................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................CATGCGTGC-------------------------------ACCGTACAAGCTGC.........................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................GCCCATGCGTGC-------------------------------ACCGTAC................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCGCAACGGCA------AC------------AGCTG..........................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACGGCA------AC------------AGCTGCA---------GC---AGC.......	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................A------AAACAAC----------------AACAACAACAAATATAAC------A...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	2	0.50	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................AAACAAC----------------AACAACAACAAATATAAC------....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	2	0.50	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................ACAAC----------------AACAACAACAAATATAAC------A...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	2	0.50	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................A------AAACAAC----------------AACAACAACAAATATAAC------....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	2	0.50	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................AC----------------AACAACAACAAATATAAC------A...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	2	0.50	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................AAACAAC----------------AACAACAACAAATATAAC------C...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	2	0.50	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................A-------------------------------------CACCAA------AAACAAC----------------AACAACAAC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................C----------------AACAACAACAAATATAAC------....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	3	0.33	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................A------AAACAAC----------------AACAACAACAAATAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	4	0.25	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................AAACAA-----------------------------------------A----------AACAAAA-------------------------------------CA----CACC..................................................................................................................................................................................................................................................................................................................................................................................................................	20	5	0.20	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................AACAAC----------------AACAACAACAAATATAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	5	0.20	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................AAACAAC----------------AACAACAACAAATA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	12	0.17	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................CAAC----------------AACAACAACAAATATA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	14	0.14	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................AC----------------AACAACAACAAATATAA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	7	0.14	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................CAAC----------------AACAACAACAAATAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.10	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GC--------------------------------------------A------------------GCA----------------------GCAGCAG-CAG------CGGCG...........................................................	21	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................AAACAAC----------------AACAACAACAAAT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTAGC--------------------------------------------A------------------GCA----------------------GCAGCAG-CA.......................................................................	19	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................ACAAC----------------AACAACAACAAATAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................AAACAAC----------------AACAACAACAAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

TCTCTGTCTTTCA-------------------------------------------------------CACGCACTCG-------AATTGC-----------AACCACATCAATCAA------TCACATCAACATCCG----AAACG---------------AT------CGACATAA------------------------------------AAACAAAC-----CCG-----AT-------------------------------------TCCCCACACTTGTCTTGCAGTGAGCTATGCGGGCGGTGCCACGCCCATGCGTAC-------------------------------GCCGTTCAAGCCGCAGCCGGTGGGCATGGCAGCAG---------GTGTTGCT-GCC------------------------------------------------------------------------------------------AGCGCCA---------------------------------------------------------------CACT------------------GAAGAGCAGCAGC----GCCGTTGGCGGTGCC------------ACGC----------CCCAGG---------------TGGCGGCCAC	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
No Reads

droWil2

CCTCTCCATA---------------AACATA------------------------------------------------------------------------AACAAAACAATAAA----AACTACATAAAC-------------------------------------------------AC--TTA------ACACAATCA----------CCACCTACACCTGCCA-----AA-------------------------------------TC----TCCTTATATTGCAGTGAGCTATGCAAAT---GCCACGCCTATGCGGCCCTA---CATGATGACAACAAAACC-AACGACA----------------------------------ACGCCAAAAATAATCAT-GCCCGC-A---GG--AGCATCAT------------------------------------------------------------------------CGGCAGCA--------------------------------------GCATCAGCAGCAG---------CA---GCA----------------------GCAGCAGCAG------GAGGAGCA------------TC------------AACAGCA---------------ACAGCTGGA	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
.......................................................................................................................................................................................................................................................................................................................................................................................................................TCAT-GCCCGC-A---GG--AGCATCAT------------------------------------------------------------------------CGGC...............................................................................................................................................................................	25	1	1.00	1	0	0	0	1	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAT------------------------------------------------------------------------CGGCAGCA--------------------------------------GCATCAGCA............................................................................................................................	22	1	1.00	1	0	0	0	1	0
............................................................................................................................................................................................................................ACACCTGCCA-----AA-------------------------------------TC----TCCTTATATTGC..........................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	1	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAG------GAGGAGCA------------TC------------AACAGCA---------------ACAGC....	26	1	1.00	1	0	0	0	1	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A---GCA----------------------GCAGCAGCAG------GAGGAGC..........................................................	21	7	0.14	1	0	0	0	1	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCA--------------------------------------GCATCAGCAGCAG---------CA---..........................................................................................................	21	20	0.10	2	0	0	0	2	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCA--------------------------------------GCATCAGCAGCAG---------C..............................................................................................................	20	20	0.10	2	0	0	0	2	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AG---------CA---GCA----------------------GCAGCAGCAG------GAGG.............................................................	21	20	0.05	1	0	1	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCA--------------------------------------GCATCAGCAGCAG---------...............................................................................................................	19	20	0.05	1	0	0	0	1	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CA--------------------------------------GCATCAGCAGCAG---------CA---GC........................................................................................................	19	20	0.05	1	0	0	1	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATCAGCAGCAG---------CA---GCA----------------------GCAG.............................................................................	21	20	0.05	1	0	1	0	0	0

dp5

TTCAAT----GCATATCTCTCCCTGAACATTCCA----------------------------------CAT------GCCACATGCACCACATACAAC---------------------------------------A----A-ACA-------------------------------------ATCGACCAACA--------AATGACATTTGCAACCAAC-----AAAACTCGAAACCTACACGAAACATCCTGTTTTTTTTCCCTCCCGTTCCT---TGCGTCTCTTGCAGTGAGCTATGCCGGCGGCGCTGCA--------------------------------------------------------------------------------------------------------------------------------GGTCCAGGTGCAGGTGGTGTTGCCCTGCCGGTGGTGCGTCCCTTCAAGGGAGCAGTTTCCAAGGTGGCC------ATGCCACCAGCGAGCGCC-------------------------------------------------------------------------------------------------------ACAG---------CAGCCGCA---------------GCAGCAGGA	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
..........................................................................................................................................................................................................................................................................................................CTATGCCGGCGGCGCTGCG--------------------------------------------------------------------------------------------------------------------------------.................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTTGCCCTGCCGGTGGTGCG...........................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0

droPer2

TTCAAT----GCATATCTCTCCCTGAACATTCCA----------------------------------CAT------GCCACATGCACCACATACAAC---------------------------------------A----A-ACA-------------------------------------ATCGACCAACA--------AATGACATTTGCAACCAAC-----AAAACTCGAAACCTACACGAAACATCCT--TTTTTTTCCCTCCCGTTCCT---TGCGTCTCTTGCAGTGAGCTATGCCGGCGGCGCTGCA--------------------------------------------------------------------------------------------------------------------------------GGTCAAGGTGCAGGTGGTGTTGCCCTGCCGGTGGTGCGTCCCTTCAAGGGAGCTGTTTCCAAGGTGGCC------ATGCCACCAGCGAGCGCC-------------------------------------------------------------------------------------------------------AC------------AGCTGCA---------------GCAGCAGGA	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
.........................................................................................................................................................................................................................................................................................................GCTATGCCGGCGGCGCTGC..................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................AGCTATGCCGGCGGCGCTGCA--------------------------------------------------------------------------------------------------------------------------------GGTC.............................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0

droAna3

TCTCTGGT-GCTA--TC------------------------------------------TCT-----------T------------------------------------------G------CTCCCTCACTTTCCCGCCGAAACA------AAG-ACAA-------------------------------------------------AT--CGACCAAC-----CCG-----AC-------------------------------------TCC---CCTTTTACTTGCAGTGAGCTATGCGGGCGCCGCCTCGCCCATCCGCCCCTA---CAAGGTGACCCCCA-------------------------------CGGGCCTCC-AGAAG---------ATG--GCA-C------------------------------------------------------------------------------------CCGC--------------------------CACC----------------------------------------------ACAGTGGCCACCACCAAAGGAGCGCCTG----GCTCAGGAGCGGTCAGC---------------GGGG---------CAACCGGA-------------------GCTGC	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
No Reads

droBip1

TCTCTTTA----G--------------------------------------------------------------TTG-------GAAGACCAT----A-------------------------CACCTTGCTCTC------T-CTAATGCCAGAA-TCGT-------------------------------------------------AA--CCACCAACC----ACG-----CC-------------------------------------TCC---CGTTTCCATTGCAGTGAGCTATGCCGG---AGCCCAGCCGATGCGCCCCTT---CAAGGTGACCGCCA-------------------------------CGGGCCTCC-AGAAG---------ATG--ACT-C------------------------------------------------------------------------------------------CCAGCGCCGC--------------CA----------------------------------------------CAACAGTG----------------------GCCACCACC---------------------------GCGGCGGCTTCAGGACCGGG---------------AGCAGTTAGT	Size	Hit Count	Total Norm	Total
No Reads

droKik1

TGCGGGCACC----ACCG-CC-----------------------GCGGTGCTGGCC-------------TCGCT-------------------------------------GACCAA------CAAGAAC----------------ATCAGCAGCA--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAGCAACAGCAGCGGC------------------------------------------------------AGTGGTG---------------------------------------------------GCAGCGTCGCCACAAC------------------GGCGGGTA----GCGCCGGCGGTGCAGGTGCG------------GG------------AGCTGG---------------CACTGGCGGC	Size	Hit Count	Total Norm	Total
No Reads

droFic1

ACGACACG---CA----------------------------------------------------------------------------------------------TATTAATTAA------CCACATCATTATCCATG--A-ACA---------------AC------CGACACAAAACA--CTC-----CGAACT---GAACC-----T--CAACCAAC-----CCGAATCGAA-------------------------------------TC----CCTTTGCCTTCCAGTGAGTTATGCAGGCGGAGTGTCGCCCATTCGTCCCTT---TAAGGTTGCCGG---------C--------------------------------------------------------------G---------------------------------------------G-------------------------A-----GTC------GTTGGGAGTGGCCAGAAGT---CCCCGATGGCCACATCAGCCGGGGGAGGAGCTGGAGGAG---------CAGCAGGA----------------------GCGGGAATCG------GAGGA---------------GC------------AGCAGCA---------------GGAGCCGCT	Size	Hit Count	Total Norm	Total
No Reads

droEle1

TTAATGTTC--CA-------------------------------------------------------TTT------GCAATCCAA---------------------------------------ACATTACAATCCA----A-ACA-----------------------------------AC--CGA------CCGCAAAAATCGGCAAT--CAACCAAC-----CCGAATCGAA-------------------------------------TC----CCTTTACCTTGCAGTGAGCTATGCGGGCGGAGTGCCACCCATTCGGCCGTTCGTTAAGGTAGCCGG---------C--------------------------------------------------------------G---------------------------------------------C-------------------------A--------------ATCGGGAGCAGCCAGAAGC---CGCCGGTGGCCACATCC----------------------------------------------------------------------------------------------------------------------------------------GCTGGA	Size	Hit Count	Total Norm	Total
No Reads

droRho1

TCACTCAC-----------------------------------CTCGGTGTCATGT-----------------ACT---------------------------------TTAATTTA------CTACATCATAATCCG----A-ACAACAA-----------------CA------------AC--CGA------CCGCATAAACC-----G--GAACCAAC-----CCG-----AA-------------------------------------TC----CCTTTACCTTGCAGTGAGTTATGCGGGCGGAGTACCACCCATTCGCCCTTT---TAAGGTGGCTGG---------C--------------------------------------------------------------G---------------------------------------------C-------------------------A--------------ATGGGGAACAGCCAGAAGC---CATCGGTGGCCACATCCG---------------------------------------------------------------------------------------------------------------CCGGG----------------AGCGCTGGA	Size	Hit Count	Total Norm	Total
No Reads

droBia1

TCCATT----CGATGTCCTCCCGCGCACACCCCTCTCACTCACTCCGGTGTC--------------------------------------C----AATATACAAACATATCAACTAA------CCACATCATTATCCG----A-ACAA--------------AC------CGACGCAA------------------------AACC-----A--CAACCAAC-----CCG-----AA-------------------------------------TC----CCTTTGCCTTCCAGTGAGTTACGGGGGCGGAGTGGCGCCCATTCGCGCCAT---CAAGATGGCCGGAGCTCCTGGC--------------------------------------------------------------G---------------------------------------------G-------------------------G--------------ATCGGGAACAACCAGAAGC---CGCCGATTGCCACCACA----------------------------------------------------------------------------------------------------------------------------------------GCCGCA	Size	Hit Count	Total Norm	Total
No Reads

droTak1

TCCATT----CGATGTCTGCCC-----------TCTCACTCACTCCGGTGAC--------------------------------------C----GGTGTTTA----AATGAATTAACCCCAACCCGAATAATATCCA----A-ACG---------------AC------CTACCCAA-----------------------------------------A----------ACCGAAA-------------------------------------AC----CCTTTACCTTGCAGTGAGTTATGCGGGCGGAGTTCAGCCCATTCGCGCCTT---CAAGATGGCCGGAAATACAGGA--------------------------------------------------------------G---------------------------------------------G-------------------------A--GGAATC------GTTGGCAGCAACCAGAAGC---CACCGATGGCCACGACC-------------------------------------------------------------------------------------------------------------------GCA---------------GGAAGCGGA	Size	Hit Count	Total Norm	Total
No Reads

droEug1

CTTGCAGA----A-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGAGCCGCCAA------------CACCAGCGG--------------------------------CA----------------------------------CCATCAC---------C-ACCTGC-C---GC--CGCATCAG------------------------------------------------------------------------CAACAGCA--------------------------------------GCAGCAGATGCCA---------CAGCAGCA----------------------GCAACAGTTG------ACGCC---------------GC------------AGCAGCAGCAGCAACATC---AGCTTCTAAT	Size	Hit Count	Total Norm	Total
No Reads

dm3

GTCGTGTATA-------------------------------------------------CCT-----------AATT----------------------------------ACCGAA------CCACATCATTATCCA----AAACA-----------------------------------AC--TTG------CTGCAAAAACA-----A--CAACCAAC-----CCG-----AA-------------------------------------TC----CCTTTACCTTCCAGTGAGTTATGCAGGCGGAGCTTCCCAAATTCGCGCCTT---AAAGGTAGCCGGAAATATTGGC--------------------------------------------------------------G---------------------------------------------G-------------------------A--------------GTCGGGAATAATCAGAAGCCGCCACCAATAGCCACAACT----------------------------------------------------------------------------------------------------------------------------------------CCC--G	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
........................................................................................................................................................................................................................................................................................................AGTTATGCAGGCGGAGCTTCCCAAA.............................................................................................................................................................................................................................................................................................................................................................................	25	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................TAGCCGGAAATATTGGC--------------------------------------------------------------G---------------------------------------------G-------------------------A--------------GTCGGG...............................................................................................................................................................................	26	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGAATAATCAGAAGCCGC...............................................................................................................................................................	19	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................CTT---AAAGGTAGCCGGAAATATTGGC--------------------------------------------------------------............................................................................................................................................................................................................................................................................	25	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................TCCAGTGAGTTATGCAGGCGGAGCTTC..................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
..................................................................................................................................................................................................................................................................................TC----CCTTTACCTTCCAGTGAGTTATG...............................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................TTATGCAGGCGGAGCTTCCCAAATTCGC........................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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...........................................................................................................................................................................................................................................................................................................TATGCAGGCGGAGCTTCC.................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................TTGGC--------------------------------------------------------------G---------------------------------------------G-------------------------A--------------GTCGGGAATAAT.........................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................CCTTCCAGTGAGTTATGCAGGC..........................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................G------CTGCAAAAACA-----A--CAACG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	8	0.13	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

CAGCGGCA----A------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAGTGGTGCGATCGGTGGTGCA--------------------------------------------------------------------------------------------------------------------------------CCGCCATCTCTTAGTGGTGGTG------------------------------------------------------------------------------------------------------------------------------------------GCAGT-GTTGG------TGGTGCGGCTGCAGGCGATCC------------TGCGGG---------------TCCGGGAGGC

Size

Hit Count

Total Norm

Total

M023
Head

M024
Male-body

M025
Embryo

M053
Female-body

O001
Testis

O002
Head

SRR553485
Ovary

SRR553486
Ovary

SRR553487
Ovary

SRR553488
Ovary

SRR618934
Ovary

V044
Embryo

SRR902008
Ovary

SRR902009
Testis

SRR1275487
Male larvae

SRR1275485
Male prepupae

SRR1275483
Male prepupae

No Reads

droSec2

CGCTGA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A----------------------------------------------------------------------------------------------------------------------------------CCAGCAGCCGCA-----GCAACAGTT---------------------------------------------------GCTGGCG---------------------------------------------------CAA---------CAACAGCA----------------------GCAACAGTTG------CAGGCGCA------------ACAG---------CAGCAGC-------------------AGCAGC	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCG---------------------------------------------------CAA---------CAACAGCA----------------------GCAACAGT.........................................................................	22	1	1.00	1	0	0	1	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGCA----------------------GCAACAGTTG------CAGGCG...........................................................	23	1	1.00	1	0	1	0	0

droYak3

GGTGTATGTCGTG------------------------------------------TATGCCT-----------AATT-----------------AACC---------AACCAACTAA------CCACAACATTATCCA----A-ACA---------------ACCAAACA------------AC--TTG------CTGCGAAAACC-----A--CAACCAAC-----CCG-----AA-------------------------------------TC----CCTTTACCTTCCAGTGAGTTATGCGGGCGGAGCTGCTCCAATTCGCGCCTT---TAAGGTGGCCGGAAATGTTGGC--------------------------------------------------------------G---------------------------------------------G-------------------------C--------------ATCGGGAACAATCAGAAGC---CATCAATGGCCACATCC----------------------------------------------------------------------------------------------------------------------------------------GCCAGT	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATCAATGGCCACATCC----------------------------------------------------------------------------------------------------------------------------------------GCCAGT	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAATCAGAAGC---CATCAAT........................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0

droEre2

GCCACAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CC----------------------------------------------------------------------------------------------------------------------------------------GCCGTT	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
No Reads

dgr_264

scaffold_15081:2759012-2759162 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads