dgr_254

Name	Class	Family	Strand
TART_DV	LINE	Jockey	-
(CTG)n	Simple_repeat	Simple_repeat	+
TART_DV	LINE	Jockey	-

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- GGATCGGGGAACGGGCGCCCAAAATGGTCCGACGCCAGCAACACAATCAGGTAATAATGGTTCACTACTACTAGCTAATAGTCAAATGCCCGCACAGCAGCAGCAGCAGGCAAGTCAGAGTCAAAGTCAAAACAGCAACAGCAGCAGCAGCAACAACAGTAATGTTGTCAATGCACAGCAGCAGCAACAGCAGCAGCAACTTGCACAACAGCAGCAGCATAGCGCACAGCAGCAACTTGCACAGCAACAAC ************************************************........((((.......((((.....))))....((((.((...((....)).)).))))......................((....))....(((...((((((....))))))...)))...((.((.((....)).)).))))))************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M041 female body
...............................................................................................................................CATAACAGCAACAGCAGCAGCAGCAACA................................................................................................	28	1	4	0.25	1	1
.................................................................................................................................................................................GCAGCAGCAACAGCAGCAGCAAC...................................................	23	0	20	0.05	1	1

Species	Coordinate	ID	Alignment
droGri2	scaffold_15074:7620799-7621049 -	dgr_254	GGATCGGGGAA--CG---------------------------------------GGC----------------------------------------------------GCCCAAAATGGTCCGA---CGCCAGCAACACAATCAGGTAA---TAATGGTTCACTACTACTAGCTAATAGTCAAATGCCCGCACAGC-----------------------------------------------------------------------AGCAGCAGC---------------------------------------------------AGGC-AAGTCAGAGTCAA-------AGT-------------------------------CA----AAACAGCAACAG---CAGCAGCA-------------------------------------------------------------------------------------------GCAA------------------------CAACAGTAATGTTGTCAATGCA---CAGCAGCAGCAACAGC------------------A---GCAGCAACTTGCA---------------------------------------------------------CAACAGCAG-------------CAGCAT---------------------------------------------------------------------------------------------------------------------------------AGC---------------GCACAGCA------------------------------------------------------------------------GCAACTT---GCACAGCAACA---------A----------------------C
droVir3	scaffold_13047:3247836-3248050 -		CGATCGCGGA----------------------------------------------CTCAG--------------------CGGCAACAGCGGC------CATCCGGGCGCCCAGAACGGTCCGA---CGCCAGCAACACAATCAGGTAA---TAATGGTTCAATACTATTAGCTAATAGTCA--------------------------------------------------------------------------------------------GC---------------------------------------------------AGGC-GAGTCAGGGTCA------------------------------------------------GGGCAACAGCAG------TAGTG----------------------------------------------------------------------------------------CTG---TCAA---------------------------------------TGCA---AA------TCAGCAGCAGCAGCAGCAACAACAACA---GCATCAACTTGCA---------------------------------------------------------CAGCAGCAG-------------CA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAGCAGCA---------A----------------------C
droMoj3	scaffold_6540:20288430-20288671 -	dmo_2001	GGATCGCGG-----------------------------------CC---A--------CGG--------------------CGGCAGCAGCAGCAACGCCAACTCGGGCGCCCAGAGCGGATCGG---CATCGGCCATACAATCAGGTAACAATAACGCCTCACTACTACTAGCTAATAGTCAG-----------------------------------------------------------------------------------------CAGC---------------------------------------------------AAGC-GAGTCAGGGTCA------------------------------------------------GGGCAACAGCAG---CAGCAGCA-------------------------------------------------------------------------------------------GCAC------------------------CAGCAGCAGCACTGTCAGT------------C------------------AACAGCAACA---GCAGCAACTTGCA---------------------------------------------------------CAGCAGCAG-------------CA---------------------------------------------------------------------------------------------------------------------------------------------------------GCAGCA------------------------------------------------------------------------GCAACAGGCCGCACAACAACA---------G----------------------C
droWil2	scf2_1100000004968:2076080-2076328 +		AGGCCAGGGAA--CGGCTGGCGATGGCAATGCTGCAG----CATCAGCAA--------CAACA--------------------ACAGC--------------------------------------------AGCA--------------------------------------------------------------------GC---------AACAACAGCATC------------------------------------------------------AGCAACAGCAA----------------------CAGCAGCAACAA------------------------------------------------------------------------------------------TGGCAGCAACTGCAGCAGCAACAACAACAACAG---------------------------------------------------------------------------------------------------------------------------------CAGCAACAACAACAGCAGCA---GCAACAACAGCAACAGCAACAACAACTGCAGCA----------------------------------------------------GC---------------------------------------------------------------------------------------------------AAC---AACAACAGCAGCAGC---------------AACAACAGCATCAGCAACAGCAACAGCA------------------------------------------------------------------------GCAACAA---TGGCAGCAGCA---------A----------------------C
dp5	2:21904592-21904822 +		TGAACA------------------------------------------------------ACATGCAGGCGACGGCCC----------------------------------------------G---CACGGCCA-----------------------------------------------------------AC------AAC---------AGTGCAGTCAGCAGTGGAGCGGCGCTTGGCGGGGGCGGAGGAGCGGCCGCCACGGCACCCAGCAGC---------------------------------------------------------------------------------AGTGCAGCGCGACGCGGA-GCCAGGCAGAGTGCGCAGCAGCAACAGCAGCAGCA-------------------------------------------------------------------------------------------GCAACAA---CAG-------------------------------------------CAGCAACAACAGCAG------------------CA---GCAAC-------------------------------------------------------------------------AACAGCAGC---------------------------------------------------------------------------------------------------------------------------------AGCATCATCAA---------------GCGCAGCA------------------------------------------------------------------------GCAA---------CAACAACA---------G----------------------C
droPer2	scaffold_3:4686037-4686264 +		TGAACA------------------------------------------------------ACATGCAGGCGACGGCCC----------------------------------------------G---CACGGCCA-----------------------------------------------------------AC------AAC---------AGTGCAGTCAGCAGTGGAGCGGCGCTTGGCGGGGGAGGAGGAGCGGCCGCCACGGCACCCAGCAGC---------------------------------------------------------------------------------AGTGCAGCGCGACGCGGA-GCCAGGCAGAGTGCGCAGCAGCAACAGCAGCAGCA----------------------------------------------------------------------------------------------ACAA---CAG-------------------------------------------CAGCAGCAACAGCAG------------------CA---GCAAC-------------------------------------------------------------------------AACAGCAGC---------------------------------------------------------------------------------------------------------------------------------AGCATCATCAA---------------GCGCAGCA------------------------------------------------------------------------GCAA---------CAACAACA---------G----------------------C
droAna3	scaffold_13417:468398-468627 +		CGAGC----------------------------------------------AATGGC-----------------------------------------------------AACAGCA-------A---CACCAGCA-----------------------------------------------------------AC------AGC---------AATACTAGCAAC------------------------------------------------------AGCAACAGCAA----------------------CACTAGCAACAGCA-----------------ACAGCAACACTGACAGCAATA-AACTTAATCCAAATACCA-AAACAGTGACCAACAGCAACAGCAACAGCA----------------------------------------------------------------------------------------------ACTC---ACTGAACAGCAGCAACAG----------------------------CTCCATGCACACCAG------------------CA---ACACT-------------------------------------------------------------------------AGCAACAGC---------------------------------------------------------------------------------------------------------------------------------AGCAGCAGCGG---------------ACACAGCA------------------------------------------------------------------------GCAACAT---GGTCAGTAGCA---------G----------------------C
droBip1	scf7180000396734:51117-51365 +		AA-----------------------------------CTGGCGGCC---ATACAGATGCAA-------------------------------------------------------------------CAGCAGCAGCAGCAGCA--------------------------------------------------------------------------------------------------------------------------AGTCTCCCAGCAGCAGCA------GCAGGTGGCGGCTCAGCAGCAGC--------------AGGCTGTGGCG---------------------------------------------------GTGGCGCAGCAACAGCA---GCGGGA---------------------------------CCAGCAGCAGCAGCAA----------------------------------------------------------------------CAGCAGCAAG----TCCAGGCG---CAGCAGCAGCAGGCCC------------------------------------------------------AGCAGATCCTTCAGGTGTCAACGAATGCGTTCATCACGCAGCAGCAG-------------CAGCAG---------------------------------------------------------------------------------------------------------------------------------ATG---------------TTGCAGCA------------------------------------------------------------------------GCAGTTG---CAACAACAGCA---------A----------------------C
droKik1	scf7180000302276:549603-549789 -		GGACCGG-------------------------------------------------C-----------------------------------------------------CCCAGAACGGACCCG---CGCCCGCAACACAATCAGGTAA---TAATGGTTCACTACTCCTAGCTAATAGTCAGATGCCCTCCCA-------------------------------------------------------------------------ACCGCCGGC---------------------------------------------------GAGC-GGGGCG---------------------------------------------------AGTGCGCAGCAGCAGCAG---CAGAA---------------------------------T--------------------------------------------------------------------------------------------------------GCGCCG---CAGCAGCAGC---------------------A---GCCACCAAG----------------------------------------------------------------------TGCCCAACAACAACATCCGGGCT------------------------------------------------------------------------------------------------------------------------------------------------C------------------------------------------------------------------------------------------CCAGCAG-----------------------------------
droFic1	scf7180000453850:255003-255258 -		ACGGCGGGGAGCTCG--------------------GG----CGGCC---A----CCAGC-------------------------------------------------------------------------------------------------------------------CAA-CAGCA------------GCAGCAGCAGCAGCAGCAACAACAGCAACAGC------------------------------------------------------AGCAGCAGCAG----------------------CGCTACCAACAG-------------------------------------------------------------------------------CA-----------GCAGCA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAAC----------------------------------------------------------------------------------------------TGCGGCAGCAGCACCAGCAAATGTCGCAGATGTCGCAGCAGGCCCACTATCCCCAGCAGCAGTCTAGTCTGGAGCATGTGCGG---CGACAGCAGCAGACGCAGCAGC---------------AACAGCAGCAGCAGCAGCAGCATCAGCA------------------------------------------------------------------------GCAACGT---G-CCAGCAGCA---------A----------------------C
droEle1	scf7180000491080:2493093-2493289 -		GG-----------------------------------CGG-----------ACAGGC-----------------------------------------------------CCCAGAACGGACCCATCGCGCCCGCATCACAATCAGGTAA---TAATGGTTCACTACTCCTAGCTAATAGTCAAATGCCCTCCCA-------------------------------------------------------------------------AACGCCCGC---------------------------------------------------CAGC-GGGTCG---------------------------------------------------AGTGGGCAGCAACAGCA---GCAGCA---------------------------------G--------------------------------------------------------------------------------------------------------------------------------CAGCAGCAACAGCAACA---GCAACAGAA----------------------------------------------------------------------TGCGCAGCAGCAACATCAGGTCG------------------------------------------------------------------------------------------------------------------------------------------------C------------------------------------------------------------------------------------------GCAGCAGCA---------A----------------------C
droRho1	scf7180000780079:358119-358375 -		GGATCGGGA-G--TGGGTGTTGCAAGTGGCCC---GGCGG-----------GCAAAT-----------------------------------------------------CCAACTACAGTCACA---C--CACAAAGACATTC-------------------------ACCAACCAGCAGCA------------------------------------CTACCAGC------------------------------------------------------AGCAGCAGCAA----------------------CACTACCAA-------------------------------------------------------------------------------------------AATCAGAGCAACTATAACAACAACAGCGGTGGCAG---------------------------------------------------------------------------------------------------------------------------------CAGCAGCAACAATAGTA---GCACCAGCTCGAG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGCAGCAACAATCAGCCGCAGGTGCGCAACTACGGCACCATGAAGGTGCCCTCATCGCCA----------------GTGGCCA---GTACAGCGCCA---------A----------------------C
droBia1	scf7180000302075:3552541-3552719 -		GG-----------------------------------CGG-----------ACAGGC-----------------------------------------------------CCCAGAACGGACCCA---CGCCCGCAACACAATCAGGTAA---TAATGGTTCACTACTCCTAGCTAATAGTCAAATGCCCTCCCA-------------------------------------------------------------------------AGCGCCTGT-------G------TCGAG--------------------------------TGGT-GGGTCG---------------------------------------------------AATGGGCAGCAGCAACAGCAGCAG--------------------------------------------------------------------------------------------------------------------------------------------------------CAGCAGC---------------------A---GCAACAGAA----------------------------------------------------------------------TGCCCAGCAGCAACA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T---G-CGAGTG------------------------------------
droTak1	scf7180000415141:5910-6127 -		CGATTTCGGCA--TG---------------------------------GC--CGGATTCGA-----------CGGCCTCAACAT-GAC--------------------------------------------AGC----------GGCCA-----------CAGCATTCCTCGATCTGGAGCACACGCTCCAGCA-------------------------------------------------------------------------G----CAAC---------------------------------------------------AGAT-GCAGCAGATGCA-----------------------------------------------GCTGCAGCAGCAGCAGCAGCAGCA-------------------------------------------------------------------------------------------------ACAC------------------CAGCAGCAACA----GCAGACGCAC---CAGCAGC------------------------A---GCAGCAACTAAGC---------------------------------------------------------CAGCAGCAG-------------CT---------------------------------------------------------------------------------------------------------------------------------GCAGCAG---------------CAACAGCA------------------------------------------------------------------------GCAACTG---ACGCAGCAGCA---------G----------------------C
droEug1	scf7180000409110:1021962-1022204 -		AGGTCGGTG--CTCC--------------------GC----CGCCC---A----CAAACAACA--------------------A---C----------------------AACAACA-------A---CACCAGCA-----------------------------------------------------------GC------AGCA------------GCAGCAGT------------------------------------------------------AACAGCAACAA----------------------CACTAGCAGCAGCA-----------------ACAACAATAGT--------------------------------------AACAACA------------------------------------------------ACAGCAGCAGCAGCAACAACAACAACACACCAAACGGT-------------------------------------------------------------------GCA---CAGCAGCAGCAACATC------------------------------------------------------AGCA----------------------------------------------------GC---------------------------------------------------------------------------------------------------AGC---AGCAGCAGC---------------AGCACCATCAACAGCAGCAGCATCACCAACAGCA------------------------------------ACAACGTGTTGTTGCCAGCAGCAAC------------------------------CA---------G----------------------C
dm3	chr3R:7201517-7201695 +		GG-----------------------------------CGG-----------ACAGGC-----------------------------------------------------CCCAGAACGGACCCA---CGCCCGCAACACAATCAGGTAA---TAATGGTTCACTACTCCTAGCTAATAGTCAAATGCCCTCCCA-------------------------------------------------------------------------AACGACCGC---------------------------------------------------GAGC-GGGTCG---------------------------------------------------AGTGCGCAGCAGCAACAGCAACAGAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCCCAGCAGCAGCATCAGGGCT------------------------------------------------------------------------------------------------------------------------------------------------CGCAGCA------------------------------------------------------------------------GCAG---------CAGCAACA---------G----------------------A
droSim2	x:11980811-11981056 -		AGGTCGGTG--CTCC--------------------GC----CGCCC---A----CAAACAACA--------------------A---C--------------------------------------------AGCA-----------------------------------------------------------GC------AGCA------------GCAGCAAC------------------------------------------------------AGCAACAACAA----------------------CACTAGCAACAATA-----------------ACAACAATAGC--------------------------------------------AGCAACA------------------------------------------GCGGCAGCAACAGCAGCAGCAACAACACACCAAACGGTGCGCAGCAGCAGCAGCAGCAACAACAC---CAT-------------------------------------------CAGCAGCAGC---------------------A---GCAGCAGCA----------------------------------------------------------------------TCATCAGCAGCAACG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTTGTTGCCAGCAGCAACCAGCAACAGCAGCAACAG---CAGCTGCAGCA---------A----------------------C
droSec2	scaffold_1:7826948-7827182 -		TGCGAGCAA-----------------------------------CAGCAT--------CTAAC--------------------ATGGG--------------------------------------------AGCA--------------------------------------------------------------------AC---------AGTACAGGCTAT------------------------------------------------------AACAGCTGAAA----------------------CACAACGAGCAA------------------------------------------------------------------------------------------TAGCAGCAAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAC----------------------------------------------------------------------------------------------AGCAGCAACATTACTAAGAAGCACAAGAAATGCAACAGCAACATCACGAACAACAACTGCAAACAAACCAAGAACAATATTAAATGTAGCAACAACAGAATAAGCTACAACAGCAGCAACACTACGAG---------------CAGCAACA------------------------------------------------------------------------GCAACGC---TACTAGCAACA---------A----------------------C
droYak3	3R:11243394-11243597 +	dya_1008	GG-----------------------------------CGG-----------ACAGGC-----------------------------------------------------CCCAGAACGGACCCA---CGCCCGCAACACAATCAGGTAA---TAATGGTTCACTACTCCTAGCTAATAGTCAAATGCCCTCCCA-------------------------------------------------------------------------AACGCCCGC---------------------------------------------------GAGC-GGGTCG---------------------------------------------------AGTGCGCAGCAGCAACAGCAACAGAA---------------------------------T--------------------------------------------------------------------------------------------------------GCACAG---CAGCAGCAGCAG-------------------------------------------------------------------------------------------------------------------CATCAGGGCT------------------------------------------------------------------------------------------------------------------------------------------------C------------------------------------------------------------------------------------------GCAGCAGCA---GCAACAGAATGTGGTGCAGCAGCAGAATGT
droEre2	scaffold_4770:14411926-14412120 -		GG-----------------------------------CGG-----------ACAGGC-----------------------------------------------------CCCAGAACGGACCCA---CGCCCGCAACACAATCAGGTAA---TAATGGTTCACTACTCCTAGCTAATAGTCAAATGCCCTCCCA-------------------------------------------------------------------------AACGCCCGC---------------------------------------------------GAGC-GGTTCG---------------------------------------------------AGTGCGCAGCAACAACAGCAACAGAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCCCAGCAGCAGCATCAGGCCT------------------------------------------------------------------------------------------------------------------------------------------------C------------------------------------------------------------------------------------------GCAGCAGCAGCAGCAACAGAATGTGGTGCAGCAGCA------

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droGri2

GGATCGGGGAA--CG---------------------------------------GGC----------------------------------------------------GCCCAAAATGGTCCGA---CGCCAGCAACACAATCAGGTAA---TAATGGTTCACTACTACTAGCTAATAGTCAAATGCCCGCACAGC-----------------------------------------------------------------------AGCAGCAGC---------------------------------------------------AGGC-AAGTCAGAGTCAA-------AGT-------------------------------CA----AAACAGCAACAG---CAGCAGCA-------------------------------------------------------------------------------------------GCAA------------------------CAACAGTAATGTTGTCAATGCA---CAGCAGCAGCAACAGC------------------A---GCAGCAACTTGCA---------------------------------------------------------CAACAGCAG-------------CAGCAT---------------------------------------------------------------------------------------------------------------------------------AGC---------------GCACAGCA------------------------------------------------------------------------GCAACTT---GCACAGCAACA---------A----------------------C	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAGCAACAGC------------------A---GCAGCAAC...................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	1	0

droVir3

CGATCGCGGA----------------------------------------------CTCAG--------------------CGGCAACAGCGGC------CATCCGGGCGCCCAGAACGGTCCGA---CGCCAGCAACACAATCAGGTAA---TAATGGTTCAATACTATTAGCTAATAGTCA--------------------------------------------------------------------------------------------GC---------------------------------------------------AGGC-GAGTCAGGGTCA------------------------------------------------GGGCAACAGCAG------TAGTG----------------------------------------------------------------------------------------CTG---TCAA---------------------------------------TGCA---AA------TCAGCAGCAGCAGCAGCAACAACAACA---GCATCAACTTGCA---------------------------------------------------------CAGCAGCAG-------------CA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAGCAGCA---------A----------------------C	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAGCAACAACAACA---GCATCA.....................................................................................................................................................................................................................................................................................................................................................................................	24	3	0.33	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAG-------------CA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAGCAGCA---------A----------------------C	20	20	0.20	4	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCA---------------------------------------------------------CAGCAGCAG-------------CA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAGC.....................................	20	19	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAGCAGCAGCAACAACAACA---GCA........................................................................................................................................................................................................................................................................................................................................................................................	28	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A------TCAGCAGCAGCAGCAGCAAC.....................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGCAGCAGCAGCAACA....................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAGCAACAACAACA---GC.........................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAGCAGCAGCAACAACAAC...............................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAGCAGCAGCAACAACA.................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A------TCAGCAGCAGCAGCAGCAACAA...................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A------TCAGCAGCAGCAGCAGCAACAACA.................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAGCAGCAACAACAACA---GCA........................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

GGATCGCGG-----------------------------------CC---A--------CGG--------------------CGGCAGCAGCAGCAACGCCAACTCGGGCGCCCAGAGCGGATCGG---CATCGGCCATACAATCAGGTAACAATAACGCCTCACTACTACTAGCTAATAGTCAG-----------------------------------------------------------------------------------------CAGC---------------------------------------------------AAGC-GAGTCAGGGTCA------------------------------------------------GGGCAACAGCAG---CAGCAGCA-------------------------------------------------------------------------------------------GCAC------------------------CAGCAGCAGCACTGTCAGT------------C------------------AACAGCAACA---GCAGCAACTTGCA---------------------------------------------------------CAGCAGCAG-------------CA---------------------------------------------------------------------------------------------------------------------------------------------------------GCAGCA------------------------------------------------------------------------GCAACAGGCCGCACAACAACA---------G----------------------C	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AG-------------CA---------------------------------------------------------------------------------------------------------------------------------------------------------GCAGCA------------------------------------------------------------------------GCAACAGG..............................................	18	20	0.05	1	1	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAG-------------CA---------------------------------------------------------------------------------------------------------------------------------------------------------GCAGCA------------------------------------------------------------------------GCAACAGG..............................................	23	20	0.05	1	1	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................CAACAGCAG---CAGCAGCA-------------------------------------------------------------------------------------------GCAC------------------------..........................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	1	0

droWil2

AGGCCAGGGAA--CGGCTGGCGATGGCAATGCTGCAG----CATCAGCAA--------CAACA--------------------ACAGC--------------------------------------------AGCA--------------------------------------------------------------------GC---------AACAACAGCATC------------------------------------------------------AGCAACAGCAA----------------------CAGCAGCAACAA------------------------------------------------------------------------------------------TGGCAGCAACTGCAGCAGCAACAACAACAACAG---------------------------------------------------------------------------------------------------------------------------------CAGCAACAACAACAGCAGCA---GCAACAACAGCAACAGCAACAACAACTGCAGCA----------------------------------------------------GC---------------------------------------------------------------------------------------------------AAC---AACAACAGCAGCAGC---------------AACAACAGCATCAGCAACAGCAACAGCA------------------------------------------------------------------------GCAACAA---TGGCAGCAGCA---------A----------------------C	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
...................................AG----CATCAGCAA--------CAACA--------------------ACAGC--------------------------------------------AGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	4	0.25	1	0	0	0	1	0
..................................CAG----CATCAGCAA--------CAACA--------------------ACAGC--------------------------------------------AGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	4	0.25	1	0	0	0	1	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCA----------------------------------------------------GC---------------------------------------------------------------------------------------------------AAC---AACAACAGCA..............................................................................................................................................................................	19	20	0.20	4	0	0	0	4	0
.........................................CATCAGCAA--------CAACA--------------------ACAGC--------------------------------------------AGCA--------------------------------------------------------------------GC---------..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	5	0.20	1	0	0	0	1	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAACAGCAGCAGC---------------AACA......................................................................................................................................................	18	20	0.20	4	0	0	0	4	0
............................................................ACA--------------------ACAGC--------------------------------------------AGCA--------------------------------------------------------------------GC---------AACA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	20	0.20	4	0	0	0	4	0
...CCAGGGAA--CGGCTGGCGATGGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	12	0.17	2	0	2	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGCAACAGCAACAGCA------------------------------------------------------------------------GCAACAA---T...........................................	26	6	0.17	1	0	1	0	0	0
.................................................................................................................................................................................................................................TC------------------------------------------------------AGCAACAGCAA----------------------CAGCAGCAACAA------------------------------------------------------------------------------------------T................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	6	0.17	1	0	1	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGCAGCAGC---------------AACAACAGC.................................................................................................................................................	20	20	0.15	3	0	0	0	3	0
...................................................................................ACAGC--------------------------------------------AGCA--------------------------------------------------------------------GC---------AACAACAGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.15	3	0	0	0	3	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAACAACAGCAGCA---GCA.....................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.10	2	0	0	0	2	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAACAACAGCAGCA---GCAAC...................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.10	2	0	0	0	2	0
............................................................................................................................................................................................................................................................................................AACAGCAA----------------------CAGCAGCAACAA------------------------------------------------------------------------------------------TGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.10	2	0	2	0	0	0
.................................................................................................................................................................................................................................TC------------------------------------------------------AGCAACAGCAA----------------------CAGCAGCAACA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	10	0.10	1	0	0	0	1	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAACAACAGCAGCA---GCAACA..................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.10	2	0	0	0	1	1
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGCAACAGCA------------------------------------------------------------------------GCAACAA---TGG.........................................	23	20	0.10	2	0	2	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGCAACAGCA------------------------------------------------------------------------GCAACAA---TGGC........................................	24	20	0.10	2	0	2	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGCAACAGCAACAGCA------------------------------------------------------------------------GCAACA................................................	24	10	0.10	1	0	0	0	1	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAACAACAACAG---------------------------------------------------------------------------------------------------------------------------------CAGC...........................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.10	2	0	2	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAG---------------------------------------------------------------------------------------------------------------------------------CAGCAACAACAACA.................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.10	2	0	0	0	2	0
............................................................................................................................................................................................................................................................................................AACAGCAA----------------------CAGCAGCAACAA------------------------------------------------------------------------------------------TGGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.10	2	0	2	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C---------------AACAACAGCATCAGCAACAGCAACAG................................................................................................................................	27	12	0.08	1	0	1	0	0	0
...CCAGGGAA--CGGCTGGCGATGGCAA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	12	0.08	1	0	1	0	0	0
.............................................................................................................................................................................................................C---------AACAACAGCATC------------------------------------------------------AGCAACAGCAA----------------------CAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	12	0.08	1	0	1	0	0	0
.............................................................CA--------------------ACAGC--------------------------------------------AGCA--------------------------------------------------------------------GC---------AACAACAGCATC------------------------------------------------------AG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	12	0.08	1	0	0	0	1	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAGCATCAGCAACAGCAACAGCA------------------------------------------------------------------------G.....................................................	27	12	0.08	1	0	0	0	1	0
..GCCAGGGAA--CGGCTGGCGATGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	12	0.08	1	0	1	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAGCAGCAGC---------------AACAACAGCATCAG............................................................................................................................................	27	12	0.08	1	0	0	0	1	0
.........................................................................................................................................................................................................................CAACAGCATC------------------------------------------------------AGCAACAGCAA----------------------CAGCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	12	0.08	1	0	0	0	1	0
.............................................................................................................................................................................................................C---------AACAACAGCATC------------------------------------------------------AGCAACAGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	14	0.07	1	0	0	0	1	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C---------------AACAACAGCATCAGCAACAGC.....................................................................................................................................	22	14	0.07	1	0	0	0	1	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACTGCAGCA----------------------------------------------------GC---------------------------------------------------------------------------------------------------AAC---AACAACA.................................................................................................................................................................................	25	15	0.07	1	0	1	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCATCAGCAACAGCAACAGCA------------------------------------------------------------------------G.....................................................	23	17	0.06	1	0	1	0	0	0
.............................................................................................................................................................................................................................AGCATC------------------------------------------------------AGCAACAGCAA----------------------CAGCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	17	0.06	1	0	1	0	0	0
.........................................................................................................................................................................................................................CAACAGCATC------------------------------------------------------AGCAACAGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	17	0.06	1	0	0	0	1	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAGCATCAGCAACAGC.....................................................................................................................................	19	17	0.06	1	0	0	0	1	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAGCAACAGCAACAGCA------------------------------------------------------------------------GCAAC.................................................	24	19	0.05	1	0	1	0	0	0
................................................................................................................................................................................................................................ATC------------------------------------------------------AGCAACAGCAA----------------------CAGCAGCAAC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	19	0.05	1	0	1	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAACAACAACAACAG---------------------------------------------------------------------------------------------------------------------------------CAGC...........................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCA---GCAACAACAGCAACAGCA......................................................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	0	1
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAACAGCAGCA---GCAACAACAG..............................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	1	0	0	0
............................................................ACA--------------------ACAGC--------------------------------------------AGCA--------------------------------------------------------------------GC---------AACAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	1	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACAACAACAGCAGCA---GCAACA..................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	1	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAACAACAACTGCAGCA----------------------------------------------------GC---------------------------------------------------------------------------------------------------AAC---A.......................................................................................................................................................................................	25	20	0.05	1	0	0	0	1	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGCAACAACAACTGCAGCA----------------------------------------------------...................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAG---------------------------------------------------------------------------------------------------------------------------------CAGCAACAACAACAGC...............................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	1	0	0	0
...........................................................................................................................................................................................................................................................................................CAACAGCAA----------------------CAGCAGCAACAA------------------------------------------------------------------------------------------TGGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	1	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGCAACAACAACTGCAGCA----------------------------------------------------GC---------------------------------------------------------------------------------------------------..............................................................................................................................................................................................	24	20	0.05	1	0	1	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAACAGCA------------------------------------------------------------------------GCAACAA---TGG.........................................	20	20	0.05	1	0	1	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCA---GCAACAACAGCAACA.........................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	1	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAACAACAACAACAG---------------------------------------------------------------------------------------------------------------------------------CAG............................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	1	0
.............................................AGCAA--------CAACA--------------------ACAGC--------------------------------------------AGCA--------------------------------------------------------------------GC---------AACA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	1	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAACAACAACAACAG---------------------------------------------------------------------------------------------------------------------------------CA.............................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	1	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACAACAACAACAG---------------------------------------------------------------------------------------------------------------------------------CA.............................................................................................................................................................................................................................................................................................................................................................................................................	18	20	0.05	1	0	1	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGCAGCAGC---------------AACAACAGCA................................................................................................................................................	22	20	0.05	1	0	1	0	0	0
..............................................................A--------------------ACAGC--------------------------------------------AGCA--------------------------------------------------------------------GC---------AACAACAGCA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	1	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAGCAACAGCA------------------------------------------------------------------------GCAACAA---TGGC........................................	25	20	0.05	1	0	1	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................G---------------------------------------------------------------------------------------------------------------------------------CAGCAACAACAACAGCAGCA---GCA.....................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	1	0
...............................................................................................................................................................................................................................CATC------------------------------------------------------AGCAACAGCAA----------------------CAGCA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	1	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACAACAGCAGCA---GCAA....................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	1	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAACAACAACAACAG---------------------------------------------------------------------------------------------------------------------------------CAGCA..........................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	1	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACAACAACAACAG---------------------------------------------------------------------------------------------------------------------------------CAGCA..........................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	1	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCA---GCAACAACAGC.............................................................................................................................................................................................................................................................................................................................................................................	18	20	0.05	1	0	0	0	1	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATCAGCAACAGCAACAGCA------------------------------------------------------------------------......................................................	20	20	0.05	1	0	0	0	1	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGCAGCA---GCAACAACAGCA............................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	1	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCA----------------------------------------------------GC---------------------------------------------------------------------------------------------------AAC---AACAACAGCAGCAG..........................................................................................................................................................................	25	20	0.05	1	0	0	0	1	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACAG---------------------------------------------------------------------------------------------------------------------------------CAGCAACAACA....................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	1	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A----------------------------------------------------GC---------------------------------------------------------------------------------------------------AAC---AACAACAGCAGCAGC---------------AACA......................................................................................................................................................	25	20	0.05	1	0	0	0	1	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAACAACAACAGCAGCA---GCAACA..................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	1	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAACAACAACAACAG---------------------------------------------------------------------------------------------------------------------------------CAGCAAC........................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	1	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGCAACAACAACTGCAGCA----------------------------------------------------GC---------------------------------------------------------------------------------------------------AAC---........................................................................................................................................................................................	27	20	0.05	1	0	1	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAACAACAACTGCAGCA----------------------------------------------------GC---------------------------------------------------------------------------------------------------AA............................................................................................................................................................................................	23	20	0.05	1	0	1	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAACAG---------------------------------------------------------------------------------------------------------------------------------CAGCAACAACAACA.................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	0	1
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAACAGCAGCA---GCAACAACA...............................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCA---GCAACAACAGCAACAGCA......................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	1	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAG---------------------------------------------------------------------------------------------------------------------------------CAGCAACAACAACAGCA..............................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	1
......................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACAACAG---------------------------------------------------------------------------------------------------------------------------------CAGCAACAACAACAG................................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	0	0	0	1	0
...........................................................AACA--------------------ACAGC--------------------------------------------AGCA--------------------------------------------------------------------GC---------AACAACAGCA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	1	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAGCAACAACAACTGCAG.........................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0
...............................................................................................................................................................................................................................................................................................AGCAA----------------------CAGCAGCAACAA------------------------------------------------------------------------------------------TGG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	1	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAACAACAACAACAG---------------------------------------------------------------------------------------------------------------------------------CA.............................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	1	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAACAGCAGCAGC---------------AACAA.....................................................................................................................................................	19	20	0.05	1	0	0	0	1	0
................................................................................................................................................................................................................................ATC------------------------------------------------------AGCAACAGCAA----------------------CAGCAGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAGCAACAGCAACAGCA------------------------------------------------------------------------GC....................................................	21	20	0.05	1	0	1	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACAACTGCAGCA----------------------------------------------------GC---------------------------------------------------------------------------------------------------AAC---A.......................................................................................................................................................................................	22	20	0.05	1	0	1	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAACAACAACAACAG---------------------------------------------------------------------------------------------------------------------------------CAGCAAC........................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	1	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACAGCAGCA---GCAACAACAGCA............................................................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	1	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACAGCAGCAGC---------------AACAACAGCA................................................................................................................................................	25	20	0.05	1	0	0	0	1	0

dp5

TGAACA------------------------------------------------------ACATGCAGGCGACGGCCC----------------------------------------------G---CACGGCCA-----------------------------------------------------------AC------AAC---------AGTGCAGTCAGCAGTGGAGCGGCGCTTGGCGGGGGCGGAGGAGCGGCCGCCACGGCACCCAGCAGC---------------------------------------------------------------------------------AGTGCAGCGCGACGCGGA-GCCAGGCAGAGTGCGCAGCAGCAACAGCAGCAGCA-------------------------------------------------------------------------------------------GCAACAA---CAG-------------------------------------------CAGCAACAACAGCAG------------------CA---GCAAC-------------------------------------------------------------------------AACAGCAGC---------------------------------------------------------------------------------------------------------------------------------AGCATCATCAA---------------GCGCAGCA------------------------------------------------------------------------GCAA---------CAACAACA---------G----------------------C	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
...............................................................................................................................................................................................................................................................................................................................................................................AGCGCGACGCGGA-GCCAGGCAGAGT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	2.00	2	0	0	0	0	0	0	0	0	0	2
.......................................................................................................................................A-----------------------------------------------------------AC------AAC---------AGTGCAGTCAGCAGTGGAGCGGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	29	1	1.00	1	0	0	0	0	0	0	1	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................CGGA-GCCAGGCAGAGTGCG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	1	0	0	0	0
................................................................GCAGGCGACGGCCC----------------------------------------------G---CACGGCCA-----------------------------------------------------------AC------......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0
.......................................................................ACGGCCC----------------------------------------------G---CACGGCCA-----------------------------------------------------------AC------AAC---------AGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	1	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C---------------------------------------------------------------------------------------------------------------------------------AGCATCATCAA---------------GCGCAGCA------------------------------------------------------------------------......................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................GGAGGAGCGGCCGCCACGGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................GTGCAGCGCGACGCGGA-GCCAGGCAGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	1	0	0	0
...............................................................................................................................................................................................................................................................................ACCCAGCAGC---------------------------------------------------------------------------------AGTGCAGCGCGACGCGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.............................................................CATGCAGGCGACGGCCC----------------------------------------------G---CACG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCATCATCAA---------------GCGCAGCA------------------------------------------------------------------------......................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C-------------------------------------------------------------------------AACAGCAGC---------------------------------------------------------------------------------------------------------------------------------AGCATCATCAA---------------GCGC..................................................................................................................................	25	1	1.00	1	0	0	0	0	1	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGCAGC---------------------------------------------------------------------------------------------------------------------------------AGCATCATCAA---------------GCGCT.................................................................................................................................	24	1	1.00	1	0	0	0	0	1	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................GCA-------------------------------------------------------------------------------------------GCAACAA---CAG-------------------------------------------CAGCAAC.......................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.10	2	0	2	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGCAACAGCAGCAGCA-------------------------------------------------------------------------------------------GCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.10	2	0	0	0	1	1	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G-------------------------------------------CAGCAACAACAGCAG------------------CA---GCA.....................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.10	2	0	2	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C-------------------------------------------------------------------------AACAGCAGC---------------------------------------------------------------------------------------------------------------------------------AGCATCATC.......................................................................................................................................................	19	11	0.09	1	0	0	0	0	1	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGCAGC---------------------------------------------------------------------------------------------------------------------------------AGCATCATCA......................................................................................................................................................	18	12	0.08	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................AACAGCAGCAGCA-------------------------------------------------------------------------------------------GCAACAA---CAG-------------------------------------------CAGCA.........................................................................................................................................................................................................................................................................................................................................................................................................................	28	14	0.07	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAA---CAG-------------------------------------------CAGCAACAACAGCAG------------------CA---........................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	0	1	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACAACAGCAG------------------CA---GCAAC-------------------------------------------------------------------------AA........................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	1	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................A-------------------------------------------------------------------------------------------GCAACAA---CAG-------------------------------------------CAGCAACAACA...................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCA-------------------------------------------------------------------------------------------GCAACAA---CAG-------------------------------------------CA............................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	1	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAGCAACAGCAGCAGCA-------------------------------------------------------------------------------------------G.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGCA-------------------------------------------------------------------------------------------GCAACAA---CAG-------------------------------------------CAGC..........................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAACAACAGCAG------------------CA---GCA.....................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAGCAG------------------CA---GCAAC-------------------------------------------------------------------------AACA......................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	1	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A---CAG-------------------------------------------CAGCAACAACAGCAG------------------C............................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAA---CAG-------------------------------------------CAGCAACAACAGC.................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAACAACAGCAG------------------CA---GCAA....................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	1	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGCAGCA-------------------------------------------------------------------------------------------GCAACAA---CAG-------------------------------------------CAG...........................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAGCA-------------------------------------------------------------------------------------------GCAACAA---CAG-------------------------------------------CAGCA.........................................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAGCA-------------------------------------------------------------------------------------------GCAACAA---CAG-------------------------------------------CAG...........................................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAG------------------CA---GCAAC-------------------------------------------------------------------------AACAGCAGC---------------------------------------------------------------------------------------------------------------------------------................................................................................................................................................................	22	20	0.05	1	0	0	1	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCA-------------------------------------------------------------------------------------------GCAACAA---CAG-------------------------------------------CAGCA.........................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	1	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAGCAG------------------CA---GCAAC-------------------------------------------------------------------------AACAG.....................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	1	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAG------------------CA---GCAAC-------------------------------------------------------------------------AACAGCAGC---------------------------------------------------------------------------------------------------------------------------------AG..............................................................................................................................................................	24	20	0.05	1	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAG------------------CA---GCAAC-------------------------------------------------------------------------AACAGCAGC---------------------------------------------------------------------------------------------------------------------------------A...............................................................................................................................................................	23	20	0.05	1	0	0	0	0	0	1	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................CA-------------------------------------------------------------------------------------------GCAACAA---CAG-------------------------------------------CAGCAACAA.....................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A---GCAAC-------------------------------------------------------------------------AACAGCAGC---------------------------------------------------------------------------------------------------------------------------------AGCA............................................................................................................................................................	19	20	0.05	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAA---CAG-------------------------------------------CAGCAACAACAGC.................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................CAGCA-------------------------------------------------------------------------------------------GCAACAA---CAG-------------------------------------------CAGCAACA......................................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAG------------------CA---GCAAC-------------------------------------------------------------------------AACAGCAGC---------------------------------------------------------------------------------------------------------------------------------AGC.............................................................................................................................................................	24	20	0.05	1	0	1	0	0	0	0	0	0	0	0

droPer2

TGAACA------------------------------------------------------ACATGCAGGCGACGGCCC----------------------------------------------G---CACGGCCA-----------------------------------------------------------AC------AAC---------AGTGCAGTCAGCAGTGGAGCGGCGCTTGGCGGGGGAGGAGGAGCGGCCGCCACGGCACCCAGCAGC---------------------------------------------------------------------------------AGTGCAGCGCGACGCGGA-GCCAGGCAGAGTGCGCAGCAGCAACAGCAGCAGCA----------------------------------------------------------------------------------------------ACAA---CAG-------------------------------------------CAGCAGCAACAGCAG------------------CA---GCAAC-------------------------------------------------------------------------AACAGCAGC---------------------------------------------------------------------------------------------------------------------------------AGCATCATCAA---------------GCGCAGCA------------------------------------------------------------------------GCAA---------CAACAACA---------G----------------------C	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAG------------------CA---GCAAC-------------------------------------------------------------------------AACAGCAGC---------------------------------------------------------------------------------------------------------------------------------AGCATC..........................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0
.......................................................................................................................................................................................................................AGTGCAGTCAGCAGTGGAGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
.............................................................................................................................................................................................................................GTCAGCAGTGGAGCGGCGCTTG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AA---CAG-------------------------------------------CAGCAGCAACAGCAG------------------CA---........................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.15	3	0	0	3	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AA---CAG-------------------------------------------CAGCAGCAACAGCA................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.10	2	0	0	2	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................GCA----------------------------------------------------------------------------------------------ACAA---CAG-------------------------------------------CAGCAGCAACA...................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	1	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAA---CAG-------------------------------------------CAGCAGCAACAGCAG------------------CA---........................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	1	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................ACAGCAGCAGCA----------------------------------------------------------------------------------------------ACAA---CA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	20	0.05	1	0	1	0	0	0	0

droAna3

CGAGC----------------------------------------------AATGGC-----------------------------------------------------AACAGCA-------A---CACCAGCA-----------------------------------------------------------AC------AGC---------AATACTAGCAAC------------------------------------------------------AGCAACAGCAA----------------------CACTAGCAACAGCA-----------------ACAGCAACACTGACAGCAATA-AACTTAATCCAAATACCA-AAACAGTGACCAACAGCAACAGCAACAGCA----------------------------------------------------------------------------------------------ACTC---ACTGAACAGCAGCAACAG----------------------------CTCCATGCACACCAG------------------CA---ACACT-------------------------------------------------------------------------AGCAACAGC---------------------------------------------------------------------------------------------------------------------------------AGCAGCAGCGG---------------ACACAGCA------------------------------------------------------------------------GCAACAT---GGTCAGTAGCA---------G----------------------C	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACAT---GGTCAGTAGCA---------G----------------------C	20	1	2.00	2	0	0	0	0	0	2
...................................................................................................................................................................................................................................................................................................A----------------------CACTAGCAACAGCA-----------------ACAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	2	0.50	1	0	1	0	0	0	0

droBip1

AA-----------------------------------CTGGCGGCC---ATACAGATGCAA-------------------------------------------------------------------CAGCAGCAGCAGCAGCA--------------------------------------------------------------------------------------------------------------------------AGTCTCCCAGCAGCAGCA------GCAGGTGGCGGCTCAGCAGCAGC--------------AGGCTGTGGCG---------------------------------------------------GTGGCGCAGCAACAGCA---GCGGGA---------------------------------CCAGCAGCAGCAGCAA----------------------------------------------------------------------CAGCAGCAAG----TCCAGGCG---CAGCAGCAGCAGGCCC------------------------------------------------------AGCAGATCCTTCAGGTGTCAACGAATGCGTTCATCACGCAGCAGCAG-------------CAGCAG---------------------------------------------------------------------------------------------------------------------------------ATG---------------TTGCAGCA------------------------------------------------------------------------GCAGTTG---CAACAACAGCA---------A----------------------C	Size	Hit Count	Total Norm	Total
No Reads

droKik1

GGACCGG-------------------------------------------------C-----------------------------------------------------CCCAGAACGGACCCG---CGCCCGCAACACAATCAGGTAA---TAATGGTTCACTACTCCTAGCTAATAGTCAGATGCCCTCCCA-------------------------------------------------------------------------ACCGCCGGC---------------------------------------------------GAGC-GGGGCG---------------------------------------------------AGTGCGCAGCAGCAGCAG---CAGAA---------------------------------T--------------------------------------------------------------------------------------------------------GCGCCG---CAGCAGCAGC---------------------A---GCCACCAAG----------------------------------------------------------------------TGCCCAACAACAACATCCGGGCT------------------------------------------------------------------------------------------------------------------------------------------------C------------------------------------------------------------------------------------------CCAGCAG-----------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droFic1

ACGGCGGGGAGCTCG--------------------GG----CGGCC---A----CCAGC-------------------------------------------------------------------------------------------------------------------CAA-CAGCA------------GCAGCAGCAGCAGCAGCAACAACAGCAACAGC------------------------------------------------------AGCAGCAGCAG----------------------CGCTACCAACAG-------------------------------------------------------------------------------CA-----------GCAGCA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAAC----------------------------------------------------------------------------------------------TGCGGCAGCAGCACCAGCAAATGTCGCAGATGTCGCAGCAGGCCCACTATCCCCAGCAGCAGTCTAGTCTGGAGCATGTGCGG---CGACAGCAGCAGACGCAGCAGC---------------AACAGCAGCAGCAGCAGCAGCATCAGCA------------------------------------------------------------------------GCAACGT---G-CCAGCAGCA---------A----------------------C	Size	Hit Count	Total Norm	Total
No Reads

droEle1

GG-----------------------------------CGG-----------ACAGGC-----------------------------------------------------CCCAGAACGGACCCATCGCGCCCGCATCACAATCAGGTAA---TAATGGTTCACTACTCCTAGCTAATAGTCAAATGCCCTCCCA-------------------------------------------------------------------------AACGCCCGC---------------------------------------------------CAGC-GGGTCG---------------------------------------------------AGTGGGCAGCAACAGCA---GCAGCA---------------------------------G--------------------------------------------------------------------------------------------------------------------------------CAGCAGCAACAGCAACA---GCAACAGAA----------------------------------------------------------------------TGCGCAGCAGCAACATCAGGTCG------------------------------------------------------------------------------------------------------------------------------------------------C------------------------------------------------------------------------------------------GCAGCAGCA---------A----------------------C	Size	Hit Count	Total Norm	Total
No Reads

droRho1

GGATCGGGA-G--TGGGTGTTGCAAGTGGCCC---GGCGG-----------GCAAAT-----------------------------------------------------CCAACTACAGTCACA---C--CACAAAGACATTC-------------------------ACCAACCAGCAGCA------------------------------------CTACCAGC------------------------------------------------------AGCAGCAGCAA----------------------CACTACCAA-------------------------------------------------------------------------------------------AATCAGAGCAACTATAACAACAACAGCGGTGGCAG---------------------------------------------------------------------------------------------------------------------------------CAGCAGCAACAATAGTA---GCACCAGCTCGAG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGCAGCAACAATCAGCCGCAGGTGCGCAACTACGGCACCATGAAGGTGCCCTCATCGCCA----------------GTGGCCA---GTACAGCGCCA---------A----------------------C	Size	Hit Count	Total Norm	Total
No Reads

droBia1

GG-----------------------------------CGG-----------ACAGGC-----------------------------------------------------CCCAGAACGGACCCA---CGCCCGCAACACAATCAGGTAA---TAATGGTTCACTACTCCTAGCTAATAGTCAAATGCCCTCCCA-------------------------------------------------------------------------AGCGCCTGT-------G------TCGAG--------------------------------TGGT-GGGTCG---------------------------------------------------AATGGGCAGCAGCAACAGCAGCAG--------------------------------------------------------------------------------------------------------------------------------------------------------CAGCAGC---------------------A---GCAACAGAA----------------------------------------------------------------------TGCCCAGCAGCAACA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T---G-CGAGTG------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droTak1

CGATTTCGGCA--TG---------------------------------GC--CGGATTCGA-----------CGGCCTCAACAT-GAC--------------------------------------------AGC----------GGCCA-----------CAGCATTCCTCGATCTGGAGCACACGCTCCAGCA-------------------------------------------------------------------------G----CAAC---------------------------------------------------AGAT-GCAGCAGATGCA-----------------------------------------------GCTGCAGCAGCAGCAGCAGCAGCA-------------------------------------------------------------------------------------------------ACAC------------------CAGCAGCAACA----GCAGACGCAC---CAGCAGC------------------------A---GCAGCAACTAAGC---------------------------------------------------------CAGCAGCAG-------------CT---------------------------------------------------------------------------------------------------------------------------------GCAGCAG---------------CAACAGCA------------------------------------------------------------------------GCAACTG---ACGCAGCAGCA---------G----------------------C	Size	Hit Count	Total Norm	Total
No Reads

droEug1

AGGTCGGTG--CTCC--------------------GC----CGCCC---A----CAAACAACA--------------------A---C----------------------AACAACA-------A---CACCAGCA-----------------------------------------------------------GC------AGCA------------GCAGCAGT------------------------------------------------------AACAGCAACAA----------------------CACTAGCAGCAGCA-----------------ACAACAATAGT--------------------------------------AACAACA------------------------------------------------ACAGCAGCAGCAGCAACAACAACAACACACCAAACGGT-------------------------------------------------------------------GCA---CAGCAGCAGCAACATC------------------------------------------------------AGCA----------------------------------------------------GC---------------------------------------------------------------------------------------------------AGC---AGCAGCAGC---------------AGCACCATCAACAGCAGCAGCATCACCAACAGCA------------------------------------ACAACGTGTTGTTGCCAGCAGCAAC------------------------------CA---------G----------------------C	Size	Hit Count	Total Norm	Total
No Reads

dm3

GG-----------------------------------CGG-----------ACAGGC-----------------------------------------------------CCCAGAACGGACCCA---CGCCCGCAACACAATCAGGTAA---TAATGGTTCACTACTCCTAGCTAATAGTCAAATGCCCTCCCA-------------------------------------------------------------------------AACGACCGC---------------------------------------------------GAGC-GGGTCG---------------------------------------------------AGTGCGCAGCAGCAACAGCAACAGAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCCCAGCAGCAGCATCAGGGCT------------------------------------------------------------------------------------------------------------------------------------------------CGCAGCA------------------------------------------------------------------------GCAG---------CAGCAACA---------G----------------------A	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
...........................................................................................................................................................................................CCCTCCCA-------------------------------------------------------------------------AACGACCGC---------------------------------------------------GT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................ATCAGGTAA---TAATGGTTA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAACAGCAACAGAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGC.........................................................................................................................................................................................................................................................................................................	22	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCT------------------------------------------------------------------------------------------------------------------------------------------------CGCAGCA------------------------------------------------------------------------GCAG---------CAGC.....................................	18	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAACAGCAACAGAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------............................................................................................................................................................................................................................................................................................................	19	11	0.18	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................GCGCAGCAGCAACAGCAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	7	0.14	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGCAACAGCAACAGAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------............................................................................................................................................................................................................................................................................................................	20	10	0.10	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

AGGTCGGTG--CTCC--------------------GC----CGCCC---A----CAAACAACA--------------------A---C--------------------------------------------AGCA-----------------------------------------------------------GC------AGCA------------GCAGCAAC------------------------------------------------------AGCAACAACAA----------------------CACTAGCAACAATA-----------------ACAACAATAGC--------------------------------------------AGCAACA------------------------------------------GCGGCAGCAACAGCAGCAGCAACAACACACCAAACGGTGCGCAGCAGCAGCAGCAGCAACAACAC---CAT-------------------------------------------CAGCAGCAGC---------------------A---GCAGCAGCA----------------------------------------------------------------------TCATCAGCAGCAACG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTTGTTGCCAGCAGCAACCAGCAACAGCAGCAACAG---CAGCTGCAGCA---------A----------------------C	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
......................................................................................................................................................................................................................................................................................................................................TA-----------------ACAACAATAGC--------------------------------------------AGCAACA------------------------------------------GCGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCAGCAGCAACCAGCAACAGCAGCAACA................................................	29	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAGCAGCAGCAACAACAC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	5	1.00	5	0	0	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAACAACAC---CAT-------------------------------------------CAGCAGCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................AACAATAGC--------------------------------------------AGCAACA------------------------------------------GCGGCG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................TA-----------------ACAACAATAGC--------------------------------------------AGCAACA------------------------------------------GCGGCA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAGCAGCAGCAACAACAC---............................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	10	0.90	9	0	0	0	0	9	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGC---------------------A---GCAGCAGCA----------------------------------------------------------------------TCATCAGCA...................................................................................................................................................................................................................................................................................................	22	7	0.71	5	0	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAGCA----------------------------------------------------------------------TCATCAGCAGCAA...............................................................................................................................................................................................................................................................................................	22	2	0.50	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACACACCAAACGGT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	15	2	0.50	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
.................................................A----CAAACAACA--------------------A---C--------------------------------------------AGCA-----------------------------------------------------------GC------A.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	3	0.33	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................AGCA-----------------------------------------------------------GC------AGCA------------GCAGCAAC------------------------------------------------------AGCAACAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	11	0.09	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAGCA----------------------------------------------------------------------TCATCAGCA...................................................................................................................................................................................................................................................................................................	18	14	0.07	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................AACA------------------------------------------GCGGCAGCAACA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	16	19	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
........................................................AACAACA--------------------A---C--------------------------------------------AGCA-----------------------------------------------------------GC------AGCA------------GCAGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AG---CAGCTGCAGCA---------A----------------------C	15	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0

droSec2

TGCGAGCAA-----------------------------------CAGCAT--------CTAAC--------------------ATGGG--------------------------------------------AGCA--------------------------------------------------------------------AC---------AGTACAGGCTAT------------------------------------------------------AACAGCTGAAA----------------------CACAACGAGCAA------------------------------------------------------------------------------------------TAGCAGCAAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAC----------------------------------------------------------------------------------------------AGCAGCAACATTACTAAGAAGCACAAGAAATGCAACAGCAACATCACGAACAACAACTGCAAACAAACCAAGAACAATATTAAATGTAGCAACAACAGAATAAGCTACAACAGCAGCAACACTACGAG---------------CAGCAACA------------------------------------------------------------------------GCAACGC---TACTAGCAACA---------A----------------------C	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
No Reads

droYak3

GG-----------------------------------CGG-----------ACAGGC-----------------------------------------------------CCCAGAACGGACCCA---CGCCCGCAACACAATCAGGTAA---TAATGGTTCACTACTCCTAGCTAATAGTCAAATGCCCTCCCA-------------------------------------------------------------------------AACGCCCGC---------------------------------------------------GAGC-GGGTCG---------------------------------------------------AGTGCGCAGCAGCAACAGCAACAGAA---------------------------------T--------------------------------------------------------------------------------------------------------GCACAG---CAGCAGCAGCAG-------------------------------------------------------------------------------------------------------------------CATCAGGGCT------------------------------------------------------------------------------------------------------------------------------------------------C------------------------------------------------------------------------------------------GCAGCAGCA---GCAACAGAATGTGGTGCAGCAGCAGAATGT

Size

Hit Count

Total Norm

Total

M026
Head

M043
Female-body

M056
Embryo

V046
Embryo

V052
Head

V058
Head

V120
Male-body

SRR1275488
Male larvae

SRR1275486
Male prepupae

SRR1275484
Male prepupae

GSM1528802
follicle cells

No Reads

droEre2

GG-----------------------------------CGG-----------ACAGGC-----------------------------------------------------CCCAGAACGGACCCA---CGCCCGCAACACAATCAGGTAA---TAATGGTTCACTACTCCTAGCTAATAGTCAAATGCCCTCCCA-------------------------------------------------------------------------AACGCCCGC---------------------------------------------------GAGC-GGTTCG---------------------------------------------------AGTGCGCAGCAACAACAGCAACAGAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCCCAGCAGCAGCATCAGGCCT------------------------------------------------------------------------------------------------------------------------------------------------C------------------------------------------------------------------------------------------GCAGCAGCAGCAGCAACAGAATGTGGTGCAGCAGCA------	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
......................................GG-----------ACAGGC-----------------------------------------------------CCCAGAACGGA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAGCAGCAACAGAA.....................	19	18	0.06	1	0	0	0	0	1	0	0

dgr_254

scaffold_15074:7620849-7620999 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-26.7	-26.6	-26.5