dgr_249

Name	Class	Family	Strand
UHU	DNA	TcMar-Tc1	+

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------################################################## TAATTATTTAATATTTTAATAAAAACTGAAGCTTCCTTTTCAAACGTGATATAACATAAAACAAATTGGCATTTAAACATTTTGCGTTTATTGTTTTGTTTAAACCTTATAGCACTTTAAATATTTTGCTAGGCGCTGTTCCAGTTTAACTGCGAGACACTGTATGTAAATTGCATATTAATTTAGTTAACTTTGTTGCAGCTATGTGACCAGTTGGGTTGAAACGCGCAAAATTCCAGCCGAAAAGTCCA ************************************************.........(((((((((((..((((.((.(((((((.((.((((((((((((((...(((((.(((.............))).)))))....))))))..)))))))).)).))))))).))....))))....))))).))))))....************************************************	Read size	Hit Count	Total Norm	Total	M041 female body
.............................................................................................................................TTGCTAGGCGCTGTTCCAGTTT........................................................................................................	22	11	0.09	1	1
......................................................................................................................................GCTGTTCCAGTTTAACTGCG.................................................................................................	20	11	0.09	1	1
...........................................................................................................................TTTTGCTAGGCGCTGTTCCAGT..........................................................................................................	22	20	0.05	1	1
.............................................................................................................................TTGCTAGGCGCTGTTCCAGTT.........................................................................................................	21	20	0.05	1	1

ATTAATAAATTATAAAATTATTTTTGACTTCGAAGGAAAAGTTTGCACTATATTGTATTTTGTTTAACCGTAAATTTGTAAAACGCAAATAACAAAACAAATTTGGAATATCGTGAAATTTATAAAACGATCCGCGACAAGGTCAAATTGACGCTCTGTGACATACATTTAACGTATAATTAAATCAATTGAAACAACGTCGATACACTGGTCAACCCAACTTTGCGCGTTTTAAGGTCGGCTTTTCAGGT ************************************************.........(((((((((((..((((.((.(((((((.((.((((((((((((((...(((((.(((.............))).)))))....))))))..)))))))).)).))))))).))....))))....))))).))))))....************************************************	Read size	Hit Count	Total Norm	Total	V109 male body	M041 female body
...........................................................................................................................................AGGTCAAATTGACGCTCTGTGA..........................................................................................	22	11	0.09	1	0	1
.........................GACTTCGAAGGAAAAGTTTGCACT..........................................................................................................................................................................................................	24	20	0.05	1	1	0
.....................TTTTGACTTCGAAGGAAAAGT.................................................................................................................................................................................................................	21	20	0.05	1	1	0

Species	Coordinate	ID	Alignment
droGri2	scaffold_15074:5242778-5243028 +	dgr_249	TAATTATTT-----AATA-------TTT--TA-------ATA----AAA-AC--------------------TGAA-GCTTC--------------CTTTTCAA-ACG-------TGATATAACATAAAACAAATTGGCATTTAAACATT--------TTGCGTTTATT--GTTTTGTTTAAACCTTATAGCACTTTAAATATTTTGCTAGGCGCTGTTCCAGTTTAACTGCGAGACACTGTATGTAAATTGCA-----------------------TAT----------------TAATTTAGTTAAC-TTT---------GTTGCAGCTATGTGACC-AGTTGGGTTGAAACGCGCAAAATTCCAGCCGAAAAGTCCA
droVir3	scaffold_13049:24503867-24504038 +		TATATAGTT-----ACTG-------TATATTA-------TTA----ATT-AA--------------------TGAT-GTT-CTTTA--------------CTAA-ACT-------AGACATATTACTCTTTAAAATGGTACCAAAATATT--------TATTCAATTCC--TAACAATTTTGTTACTACATACCTCTTAAATCGTGGGTATGCACTGCATAAAATAAGCTGTGAGCCACTGTAGATGAAT----------------------------------------------------------------------------------------------------------------------------------
droMoj3	scaffold_6482:2328703-2328870 -		TATTATTTT-----TTAG-------AATA--G-------AAA----AAT-AA--------------------TGAA-GTA-CCTTA--------------ATAC-ATAT------CGAATGACTAATAAATAAAACCCCATTTAAATTTT--------TGGGATATCTT--TACTGGTTTAGCGGGAATACGGCTTTAAAATTGTACTATACCGCTGCACGAAATAAGTTGTGAGCCAGTGTATATA-------------------------------------------------------------------------------------------------------------------------------------
droWil2	scf2_1100000004949:770552-770766 +		TTTTTAAAC-----GTTATTTTAAAAGT---A-----GCAAA----AAC-AA--------------------TAAA-GTA-ACTAA------------A--TGT-AGTA------TAAATGATCACTAAATAAAACTGCATTTAAATTTT--------TTTGATATCTT--CAATAGTTTAATAGGTACACGCTGTTAAAGTTTTACTACACCCCTGCACGAAATAAGCTGTGAGCCACTGTACATTAAATTGA-----------------------ATTGATGTC----------AAGTTTTGTTTAT-TTT---------GGTCC---------------------------------------------------AG
dp5	2:30297301-30297373 +		ATCAATCAA-----TCTA-------CA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A---------TTGTTAGCTATGTGACG-AGTTGGGTTGAAACGCGTAAAATTCCAGCCGAAAAGTCCA
droPer2	scaffold_189:34562-34677 -		TTCTATCTT-----CATT--TAA--AATA-AA-----A---TCATT-----A--------------------T----GA----T----------ATA--TACCTCTCTGAAAAGGTAAAACTTCAAGCTTTATTCCCTCATTAAAATTTT--------TTTATTTTT----TTGTAGTTTAATG--------CAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTA
droAna3	scaffold_12966:127891-128078 -		TATTAAACA-----TATA-------GTTA--G-------ATA----ATA-AA--------------------TAAA-GTC--------------ATATATTTTA-AGT-------TATAACATAAAACTAAAATTCTGCGTTTAAATTTT--------TTCAAAATATC--GCTTAGTTTGGATAATAT---GATTTAAAGTTTTCGATTAGTGGTGGTTGAAATAAGCTTT-----ACTGTAAATCCACTGTA-----------------------AAT----------------GAGCCTTTTTCTC-TTT-----------------------------------------------------------------GT
droBip1	scf7180000394525:23160-23322 +		TATATATGA----------------------------------------------AGTTAA----------------------TAA------------ATATTT-AGT-------TTAAACATAGATCTAACATTGTGCGTTTAAATTTT--------TTGGAAAAATC--CTTTGGTTCATGTTTTACAGGCATTTAAAGTTTTTCACTGGGTCTGGTTGAAATAAGCTGTGAGCCACTGTATGTACTTT-----------------------------------------------------------------------------------------------------------------------GATTCATTTA
droKik1	scf7180000302281:49991-50245 -		TCATTAAAAAAAGTTGTT--------------------------------------GTTAAAAATGAATAAACTAA-ACT--------------ATATTTTTTA-AGT-------TAAAATGTCAGCTTACCATTCTGCGTTTCATTTTT--------GTCGGTTGCTCGGTTATGGTTCAGAAGTTATAGCTGTTTTAAGTTGGAAATTAGGTGTGAGTCAAATAAGCTGTGAGCCACTGTAAATCCCTAGCAAGAATTGCTTAATTTGTGTTATTTGT------TGTGTA--T-GTGCCTT----------GTGTTGTTAAACCGATTTAT------------------------------GT----TGAAAAG---T
droFic1	scf7180000454165:21286-21522 +		TGTTTAAGC-----CGTTTTTGAA-AA-T-AA-----A---TGATT-----T--------------------T----GT----T----------ACG--T-TAT-TCT-------AAATAAGTTAATCTTTCATTTGGCACCTTGTTTAT--------TCCAATATTCC--TTATAGTTTTACCGCTATGGGCGTTTAAAGTTAAAAGTATGCACTGCATACTTTAAGCTGTGAGCCACTGTAACTGCGTTTCG-----------------------AGT------AGTAT-----------ATCCATC-TTCGTGATGCC---------------ATAAATTCCGATCAGAATGCGCAAAATGTCGGGCAAA-------
droEle1	scf7180000490085:81886-82065 -		AAATATTTA-----CAAA-------ATT---A-----TGAAA----ATTATATGAAGTTAC----------------------AAA------------CTAATA-AAT-------ATAACCATTACAAAAAGATCGTGCATTTAAATTTT--------GTTCATATCTT--GTTTGGTCTAGCTTTTATAGGCTGTATAAGTTT-TTTTGGTTGCTGGTTGAAATAAGCTGTGAGCCACTGTAGCTAATCATCA-----------------------T----------------------------------------------------------------------------------------------------AT
droRho1	scf7180000779506:459928-460147 +		TAAGAAGTT-----CCTT-------GCTA-GA-------ATA----AA---------TAAA-----------TGAAAACAT--T------------ATTTTTGA-AGT-------TAAAACAACAGTTAACCTTTCTGCGTTTTATTTTT--------ATGCGTATCTC--TTATGGTTCAGGAGTTATACCTGTTTAATGTTGAAAATTAGGTGTGGGTCAAATAAGCTGTGAGCCACTGTAGCTATGAGTTT-----------------------AGG------GGCTTAGGGAAAATCCACTTAGC-TCT---------AATCCACCTAT---------------------------------------------GT
droBia1	scf7180000302261:1325402-1325575 +		TAATTATTTT----T-GTTTTTATGATT---A-----AGAAA----ATCGC-------TTTCATTTAA---------------TAA------------AT---A-AGT-------TAATATTCCCTAATAAGATTCTGCATTAAAATTTT--------TCTGTTATCTC--TTATAGTTTAGCTGGAATAACGACTTAAACTTT-TTTAGGTAACTGCACGAAATAAGCTGCGAGCCACTGTATGTA-------------------------------------------------------------------------------------------------------------------------------------
droTak1	scf7180000415866:346427-346597 +		AATGTTTAA------ATA-------AAT---A-----TGAAA----ATTATATGATGCTAA----------------------AAA------------ATAATA-AAT-------AGAAACATAACATCAAAATCGTGCATTTAAATTAT--------TTTCATATGTG--TCTTGGTTTAGCTTTTATAGGCTGTTGATTTT-TTTTTGGCAGGTGGTTGAAATAAGCTGTGAGCCACTGTATACC-----------------------------------------------------------------------------------------------------------------------------------AA
droEug1	scf7180000407214:4013-4153 +		AATCGTTTT-----AGT-----------------------------------------------TTAA---------------TAAGCATGTTTATATTCC----------------------------------CTGAATTAAAATTTTTTTATATATTTGATATATT--TTTTAGTTTAGCAGGAATAACGACTCAAACATTTTATTGGTAGCTGCACGAATTAAGCTGCGATCCGCTGTAT----------------------------------------------------------------------------------------------------------------------------------------
dm3	chr3R:16859150-16859205 -		TTCCAGCT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGTAACC-AGTTGGGTTGAAACGCGAAAAATTCCAGCCGAAAAGTCCA
droSim2	3r:4444153-4444255 +		ATACTATATA----A-GA-------AC-T-ATATAAGT---TCGTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCACTAACCCA-----------CCTCTC---------TTTCCAGCTATGTAACC-AGTTGGGTTGAAACGCGTAAAATTCCAGCCGAAAAGTCCA
droSec2	scaffold_38:266607-266709 +		ATACTATATA----A-GA-------AC-T-ATATAAGT---TCGTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCACTAACCCA-----------TCTCTC---------TTTCCAGCTATGTAACC-AGTTGGGTTGAAACGCGTAAAATTCCAGCCGAAAAGTCCA
droYak3	2L:20349186-20349345 +		AAAATAATTA----A-AA-------AC-A-AAATA--------------------ATTTAA----------------------TAA------------ATAATA-TCT-------TGAAACATACAAGAAATATGTTGCGTTTAAATTTT--------GTTGATACAA---TTTTAGTTCAGCTTTAACAGACCGTTGAAGTTTCAGATAGACGCTGGTCGAAATAAGCTGTGAGCCACGGTACATA-------------------------------------------------------------------------------------------------------------------------------------
droEre2	scaffold_4770:156407-156623 -		TAAAAATAA-----AATA-------AG------------------------------TTAG----------------------TAA------------ATATTA-TCT-------TGATACATACAAAAACTATTTTGCGTTAAAATTTTT-------GTTGATAAAAT--TTTTAGTTCAGCTTTTGCAGACCGTTGAAGTTTCAGATAGACGCTGGTTGAATTAAGCTGTGAGCCACTGTACATACGTAGTTG-A--------------------CTT-----CAACTTAGCCA-----------AACTTA---------TTATCGGCTCAATGATG-ATTTCGAGTAGTACGTG-----------------------

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droGri2

TAATTATTT-----AATA-------TTT--TA-------ATA----AAA-AC--------------------TGAA-GCTTC--------------CTTTTCAA-ACG-------TGATATAACATAAAACAAATTGGCATTTAAACATT--------TTGCGTTTATT--GTTTTGTTTAAACCTTATAGCACTTTAAATATTTTGCTAGGCGCTGTTCCAGTTTAACTGCGAGACACTGTATGTAAATTGCA-----------------------TAT----------------TAATTTAGTTAAC-TTT---------GTTGCAGCTATGTGACC-AGTTGGGTTGAAACGCGCAAAATTCCAGCCGAAAAGTCCA	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
............................................................................................................................................................................................................TTGCTAGGCGCTGTTCCAGTTT..........................................................................................................................................................	22	11	0.09	1	1	0
.....................................................................................................................................................................................................................GCTGTTCCAGTTTAACTGCG...................................................................................................................................................	20	11	0.09	1	1	0
..........................................................................................................................................................................................................TTTTGCTAGGCGCTGTTCCAGT............................................................................................................................................................	22	20	0.05	1	1	0
............................................................................................................................................................................................................TTGCTAGGCGCTGTTCCAGTT...........................................................................................................................................................	21	20	0.05	1	1	0

droVir3

TATATAGTT-----ACTG-------TATATTA-------TTA----ATT-AA--------------------TGAT-GTT-CTTTA--------------CTAA-ACT-------AGACATATTACTCTTTAAAATGGTACCAAAATATT--------TATTCAATTCC--TAACAATTTTGTTACTACATACCTCTTAAATCGTGGGTATGCACTGCATAAAATAAGCTGTGAGCCACTGTAGATGAAT----------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
.....................................................................................................................................................................................................................ACTGCATAAAATAAGCTGTGAGC................................................................................................................................................	23	4	31.00	124	0	0	0	0	2	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	15	9	22	20	16	0	1	6	8	0	7	3	1	7	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................TCAATTCC--TAACAATTTTGTTACTACA..............................................................................................................................................................................................	27	2	13.00	26	0	0	20	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	2	2	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................ACTGCATAAAATAAGCTGTGAGCCACTG...........................................................................................................................................	28	4	11.75	47	0	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	3	9	9	5	0	0	0	2	3	0	4	4	0	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................ACTGCATAAAATAAGCTGTGAGCCACT............................................................................................................................................	27	4	8.00	32	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	4	4	4	3	3	4	0	1	1	0	4	1	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................ACTGCATAAAATAAGCTGTGAG.................................................................................................................................................	22	5	7.60	38	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	4	5	1	5	5	1	0	3	0	0	5	2	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................ACTGCATAAAATAAGCTGTGAGCCAC.............................................................................................................................................	26	4	6.25	25	1	0	2	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	4	2	5	2	2	0	0	1	0	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................ACTGCATAAAATAAGCTGTGAGCC...............................................................................................................................................	24	4	6.25	25	0	0	2	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	3	3	1	6	1	0	0	0	1	0	1	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................ACTGCATAAAATAAGCTGTGAGCCA..............................................................................................................................................	25	4	5.00	20	0	0	1	0	0	0	2	0	0	0	0	0	0	2	0	0	0	0	0	0	1	0	0	0	0	1	0	0	2	1	0	1	3	1	1	3	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................TCAATTCC--TAACAATTTTGTTACT.................................................................................................................................................................................................	24	2	5.00	10	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	3	1	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................TCAATTCC--TAACAATTTTGTTACTAC...............................................................................................................................................................................................	26	2	4.50	9	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	2	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................ATTCC--TAACAATTTTGTTACTACATACC..........................................................................................................................................................................................	28	2	3.50	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................TTAAATCGTGGGTATGCACTGCATAAAA............................................................................................................................................................	28	3	2.33	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	1	0	0	0	2	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................ACTGCATAAAATAAGCTGTGAGCCT..............................................................................................................................................	25	4	2.25	9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	3	0	0	0	2	0	0	0	1	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................ACTGCATAAAATAAGCTGTGAGCCAT.............................................................................................................................................	26	4	2.25	9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	1	1	2	0	0	1	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...ATAGTT-----ACTG-------TATATTA-------TTA----ATT-AA--------------------TG..................................................................................................................................................................................................................................................................................................................	27	2	2.00	4	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................ACTGCATAAAATAAGCTGTGA..................................................................................................................................................	21	5	2.00	10	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	3	0	2	0	0	0	0	2	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................ACT-------AGACATATTACTCTTTAAAATGG..................................................................................................................................................................................................................................................	26	2	1.50	3	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................CAATTCC--TAACAATTTTGTTACTACA..............................................................................................................................................................................................	26	2	1.50	3	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................TAAGCTGTGAGCCACTGTAGATGA....................................................................................................................................	24	2	1.50	3	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................TCAATTCC--TAACAATTTTGTTACTACAA.............................................................................................................................................................................................	28	2	1.50	3	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...ATAGTT-----ACTG-------TATATTA-------TTA----ATT-AA--------------------TGA.................................................................................................................................................................................................................................................................................................................	28	2	1.50	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...ATAGTT-----ACTG-------TATATTA-------TTA----ATT-AA--------------------....................................................................................................................................................................................................................................................................................................................	25	2	1.50	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................TCAATTCC--TAACAATTTTGTTACTA................................................................................................................................................................................................	25	2	1.50	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................TAAGCTGTGAGCCACTGTAGATGAAT----------------------------------------------------------------------------------------------------------------------------------	26	2	1.50	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................ATTCC--TAACAATTTTGTTACTACATAC...........................................................................................................................................................................................	27	2	1.50	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............CTG-------TATATTA-------TTA----ATT-AA--------------------TGAT-GTT-...........................................................................................................................................................................................................................................................................................................	25	2	1.50	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................ACTGCATAAAATAAGCTGTGAGCCACTT...........................................................................................................................................	28	4	1.25	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	3	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................TACTCTTTAAAATGGTACCAAAATA........................................................................................................................................................................................................................................	25	2	1.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................CT-------AGACATATTACTCTTTAAAATGGT.................................................................................................................................................................................................................................................	26	2	1.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................ACT-------AGACATATTACTCTTTAAAATGGTACC..............................................................................................................................................................................................................................................	30	2	1.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
.....................................................................................................................................................................................................................ACTGCATAAAATAAGCTGTGAGCCAA.............................................................................................................................................	26	4	1.00	4	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...ATAGTT-----ACTG-------TATATTA-------TTA----ATT-A.........................................................................................................................................................................................................................................................................................................................................	24	2	1.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................TTAAAATGGTACCAAAATATT--------T.............................................................................................................................................................................................................................	22	2	1.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................TA--------------CTAA-ACT-------AGACATATTACTCTTT.........................................................................................................................................................................................................................................................	25	2	1.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................TTACTCTTTAAAATGGTACCAAAATA........................................................................................................................................................................................................................................	26	2	1.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................ATAAGCTGTGAGCCACTGTAGATGAA...................................................................................................................................	26	2	1.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............CTG-------TATATTA-------TTA----ATT-AA--------------------TGAT-GT.............................................................................................................................................................................................................................................................................................................	24	2	1.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................TCAATTCC--TAACAATTTTGTTACTACATA............................................................................................................................................................................................	29	2	1.00	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................T-------AGACATATTACTCTTTAAAATGGT.................................................................................................................................................................................................................................................	25	2	1.00	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................TAAATCGTGGGTATGCACTGCATAAAA............................................................................................................................................................	27	3	1.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................TACTCTTTAAAATGGTACCAAAATC........................................................................................................................................................................................................................................	25	2	1.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2
......................................................................................................................................................................................................................CTGCATAAAATAAGCTGTGAGCCACTG...........................................................................................................................................	27	4	0.75	3	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................CTGCATAAAATAAGCTGTGAGC................................................................................................................................................	22	4	0.75	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................CTGCATAAAATAAGCTGTGAGCCAC.............................................................................................................................................	25	4	0.75	3	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................ACTGCATAAAATAAGCTGTGAGCCTT.............................................................................................................................................	26	4	0.75	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................TAAGCTGTGAGCCACTGTAG........................................................................................................................................	20	3	0.67	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................TACCTCTTAAATCGTGGGTA..........................................................................................................................................................................	20	3	0.67	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................TAAGCTGTGAGCCACTGTAGATG.....................................................................................................................................	23	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................TCAATTCC--TAACAATTTTGTTAA..................................................................................................................................................................................................	23	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................TCAATTCC--TAACAATTTTGTTAC..................................................................................................................................................................................................	23	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................TCAATTCC--TAACAATTTTGTTA...................................................................................................................................................................................................	22	2	0.50	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................CT-------AGACATATTACTCTTTAAAATGGTC................................................................................................................................................................................................................................................	27	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................TAAGCTGTGAGCCACTGTAGATGAA...................................................................................................................................	25	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................CAATTCC--TAACAATTTTGTTACT.................................................................................................................................................................................................	23	2	0.50	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................TCC--TAACAATTTTGTTACTACATA............................................................................................................................................................................................	24	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................ATTCC--TAACAATTTTGTTACTACA..............................................................................................................................................................................................	24	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................AGACATATTACTCTTTAAAATGGTACC..............................................................................................................................................................................................................................................	27	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................ATTCC--TAACAATTTTGTTACTACATAAA..........................................................................................................................................................................................	28	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................TAAAATAAGCTGTGAGCCACTGTAGATG.....................................................................................................................................	28	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................TA--------------CTAA-ACT-------AGACATATTACTCTTTT........................................................................................................................................................................................................................................................	26	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................ATTCC--TAACAATTTTGTTACTACATACCC.........................................................................................................................................................................................	29	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...ATAGTT-----ACTG-------TATATTA-------TTA----AT............................................................................................................................................................................................................................................................................................................................................	22	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
.....................................................................................................................................................................................................................ACTGCATAAAATAAGCTGTGAGCCATG............................................................................................................................................	27	4	0.50	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................TAACAATTTTGTTACTACA..............................................................................................................................................................................................	19	2	0.50	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................TA--------------CTAA-ACT-------AGACATATTACC.............................................................................................................................................................................................................................................................	21	2	0.50	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...ATAGTT-----ACTG-------TATATTA-------TTA----A.............................................................................................................................................................................................................................................................................................................................................	21	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................ATTCC--TAACAATTTTGTTACTACATACA..........................................................................................................................................................................................	28	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................ACTACATACCTCTTAAATCGT...............................................................................................................................................................................	21	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...ATAGTT-----ACTG-------TATATTA-------TTA----ATT-AA--------------------TTG.................................................................................................................................................................................................................................................................................................................	28	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................TCAATTCC--TAACAATTTTGTTACTACAT.............................................................................................................................................................................................	28	2	0.50	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................ATTCC--TAACAATTTTGTTACTAC...............................................................................................................................................................................................	23	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................TG-------TATATTA-------TTA----ATT-AA--------------------TGAT-GTT-CT.........................................................................................................................................................................................................................................................................................................	26	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................TCAATTCC--TAACAATTTTGTTACTACC..............................................................................................................................................................................................	27	2	0.50	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................CT-------AGACATATTACTCTTTAAAATGG..................................................................................................................................................................................................................................................	25	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................ATTCC--TAACAATTTTGTTACT.................................................................................................................................................................................................	21	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................TAAAATAAGCTGTGAGCCACTGTAGA.......................................................................................................................................	26	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................TCAATTCC--TAACAATTTTGTTACTC................................................................................................................................................................................................	25	2	0.50	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................TCAATTCC--TAACAATTTTGTTACTACT..............................................................................................................................................................................................	27	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................AAGCTGTGAGCCACTGTAGATGA....................................................................................................................................	23	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................ACTGCATAAAATAAGCTGTGAGCCATAT...........................................................................................................................................	28	4	0.50	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................AAGCTGTGAGCCACTGTAGATGAA...................................................................................................................................	24	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................TA--------------CTAA-ACT-------AGACATATTACTCTT..........................................................................................................................................................................................................................................................	24	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................AGACATATTACTCTTTAAAATGGTACCA.............................................................................................................................................................................................................................................	28	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................AA--------------------TGAT-GTT-CTTTA--------------CTAA-ACT-------AGACA....................................................................................................................................................................................................................................................................	26	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................ACTGCATAAAATAAGCTGTGAGCCACTA...........................................................................................................................................	28	4	0.50	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................ATTACTCTTTAAAATGGTACCAAA...........................................................................................................................................................................................................................................	24	2	0.50	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................TTTA--------------CTAA-ACT-------AGACATATTACTCTTTAA.......................................................................................................................................................................................................................................................	29	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................AT-GTT-CTTTA--------------CTAA-ACT-------AGAA.....................................................................................................................................................................................................................................................................	21	2	0.50	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............CTG-------TATATTA-------TTA----ATT-AA--------------------TGAT-GTT-C..........................................................................................................................................................................................................................................................................................................	26	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................TAAGCTGTGAGCCACTGTAGA.......................................................................................................................................	21	2	0.50	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................TTACTCTTTAAAATGGTACCAAAATAT.......................................................................................................................................................................................................................................	27	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................AT-GTT-CTTTA--------------CTAA-ACT-------AGACA....................................................................................................................................................................................................................................................................	22	2	0.50	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................T-------AGACATATTACTCTTTAAAATGGTACC..............................................................................................................................................................................................................................................	28	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................ACT-------AGACATATTACTCTTTAAAA.....................................................................................................................................................................................................................................................	23	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
...............................................................................................................................................................................................................................ATAAGCTGTGAGCCACTGTAGA.......................................................................................................................................	22	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................ACTGCATAAAATAAGCTGTGAGCCC..............................................................................................................................................	25	4	0.50	2	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................T-------AGACATATTACTCTTTAAAATGGTACCA.............................................................................................................................................................................................................................................	29	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................CAATTCC--TAACAATTTTGTTACTACATA............................................................................................................................................................................................	28	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......TT-----ACTG-------TATATTA-------TTA----ATT-AA--------------------TGA.................................................................................................................................................................................................................................................................................................................	24	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................TT-CTTTA--------------CTAA-ACT-------AGACATATTACTC............................................................................................................................................................................................................................................................	27	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................ACTGCATAAAATAAGCTGTG...................................................................................................................................................	20	5	0.40	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................ACTGCATAAAATAAGCTGT....................................................................................................................................................	19	5	0.40	2	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................CACTGCATAAAATAAGCTGTGAGC................................................................................................................................................	24	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................TAAATCGTGGGTATGCACTGCATA...............................................................................................................................................................	24	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................AGACATATTACTCTTTAAAATG...................................................................................................................................................................................................................................................	22	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................TTAAATCGTGGGTATGCACTGCATAAA.............................................................................................................................................................	27	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................TCTTAAATCGTGGGTATGC.......................................................................................................................................................................	19	3	0.33	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................TGGGTATGCACTGCATAAAATAAGCT......................................................................................................................................................	26	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................ATGGTACCAAAATATT--------TATTCAATTC....................................................................................................................................................................................................................	26	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................CACTGCATAAAATAAGCTGTGAGCCTA.............................................................................................................................................	27	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................CTTAAATCGTGGGTATGCACT....................................................................................................................................................................	21	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................TACCTCTTAAATCGTGGGTATGCA......................................................................................................................................................................	24	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................AGACATATTACTCTTTAAAATGGTAC...............................................................................................................................................................................................................................................	26	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................TACCTCTTAAATCGTGGGTATGCAC.....................................................................................................................................................................	25	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................TTAAATCGTGGGTATGCACTGCATA...............................................................................................................................................................	25	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................TTAAATCGTGGGTATGCACTGCATAA..............................................................................................................................................................	26	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................CTCTTAAATCGTGGGTATGCACT....................................................................................................................................................................	23	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................TACCTCTTAAATCGTGGGTAT.........................................................................................................................................................................	21	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................TACCTCTTAAATCGTGGGTATG........................................................................................................................................................................	22	3	0.33	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................TAAATCGTGGGTATGCACTG...................................................................................................................................................................	20	3	0.33	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................TACCTCTTAAATCGTGGGTAA.........................................................................................................................................................................	21	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................TCTTAAATCGTGGGTATGCACT....................................................................................................................................................................	22	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................TTAAATCGTGGGTATGCACTGCATC...............................................................................................................................................................	25	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................CATATTACTCTTTAAAATGGTAC...............................................................................................................................................................................................................................................	23	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................TAAATCGTGGGTATGCACTGCATAAA.............................................................................................................................................................	26	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................AGACATATTACTCTTTAAAATGGT.................................................................................................................................................................................................................................................	24	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................TCTTAAATCGTGGGTATGCACTGCA.................................................................................................................................................................	25	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................TACCTCTTAAATCGTGGGTATGCACTG...................................................................................................................................................................	27	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................ATAAGCTGTGAGCCACTGTAGATC.....................................................................................................................................	24	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................ATAAGCTGTGAGCCACTGTAG........................................................................................................................................	21	3	0.33	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................TACCTCTTAAATCGTGGGTATGCACTGC..................................................................................................................................................................	28	3	0.33	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................ATACCTCTTAAATCGTGGGTATGCAC.....................................................................................................................................................................	26	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................ACTGCATAAAATAAGCTGTGAGCCTA.............................................................................................................................................	26	4	0.25	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................ACTGCATAAAATAAGCTGTGAGCCTTA............................................................................................................................................	27	4	0.25	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................CTGCATAAAATAAGCTGTGAGCCC..............................................................................................................................................	24	4	0.25	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................ACTGCATAAAATAAGCTGTGAGCCACA............................................................................................................................................	27	4	0.25	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................ACTGCATAAAATAAGCTGTGAGCCAG.............................................................................................................................................	26	4	0.25	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................GCATAAAATAAGCTGTGAGCCACTGT..........................................................................................................................................	26	4	0.25	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................CTGCATAAAATAAGCTGTGAGCC...............................................................................................................................................	23	4	0.25	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................CTGCATAAAATAAGCTGTGAGCCT..............................................................................................................................................	24	4	0.25	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................ACTGCATAAAATAAGCTGTGAGCT...............................................................................................................................................	24	4	0.25	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................CTGCATAAAATAAGCTGTGAGCCACT............................................................................................................................................	26	4	0.25	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................CTGCATAAAATAAGCTGTGAGCCA..............................................................................................................................................	24	4	0.25	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................ACTGCATAAAATAAGCTG.....................................................................................................................................................	18	6	0.17	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................ACTGCATAAAATAAGCTGTGAGCTTA.............................................................................................................................................	26	7	0.14	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................TGTGAGCCACTGTAGAAA.....................................................................................................................................	18	14	0.07	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

TATTATTTT-----TTAG-------AATA--G-------AAA----AAT-AA--------------------TGAA-GTA-CCTTA--------------ATAC-ATAT------CGAATGACTAATAAATAAAACCCCATTTAAATTTT--------TGGGATATCTT--TACTGGTTTAGCGGGAATACGGCTTTAAAATTGTACTATACCGCTGCACGAAATAAGTTGTGAGCCAGTGTATATA-------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
.................................................................................................................................................................GATATCTT--TACTGGTTTAGCGGGAAT...............................................................................................................................................................................................	26	12	0.08	1	0	0	0	0	0	1
.................................................................................................................................................................GATATCTT--TACTGGTTTAGCGGGA.................................................................................................................................................................................................	24	14	0.07	1	0	0	0	0	0	1

droWil2

TTTTTAAAC-----GTTATTTTAAAAGT---A-----GCAAA----AAC-AA--------------------TAAA-GTA-ACTAA------------A--TGT-AGTA------TAAATGATCACTAAATAAAACTGCATTTAAATTTT--------TTTGATATCTT--CAATAGTTTAATAGGTACACGCTGTTAAAGTTTTACTACACCCCTGCACGAAATAAGCTGTGAGCCACTGTACATTAAATTGA-----------------------ATTGATGTC----------AAGTTTTGTTTAT-TTT---------GGTCC---------------------------------------------------AG	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
............................................................................................................................................................................................................................GAAATAAGCTGTGAGCCACTGTACA.......................................................................................................................................	25	6	1.83	11	0	9	0	2	0
..........................................................................................................................................................................................................TTTACTACACCCCTGCACGAAATAAGC.......................................................................................................................................................	27	6	0.33	2	0	2	0	0	0
.........................................................................................................................................................................................................................CACGAAATAAGCTGTGAGCCACTGTACA.......................................................................................................................................	28	5	0.20	1	0	1	0	0	0
.......................................................................................................................................................................................................................TGCACGAAATAAGCTGTGAGCCACTG...........................................................................................................................................	26	20	0.20	4	0	2	0	2	0
.............................................................................................................................................................................................................................AAATAAGCTGTGAGCCACTGTACA.......................................................................................................................................	24	11	0.18	2	0	1	0	1	0
............................................................................................................................................................................................................TACTACACCCCTGCACGAAATAAGCTG.....................................................................................................................................................	27	6	0.17	1	0	1	0	0	0
......................................................................................................................................................................................................AAGTTTTACTACACCCCTGCACGAAA............................................................................................................................................................	26	6	0.17	1	0	1	0	0	0
..........................................................................................................................................................................................................TTTACTACACCCCTGCACGAAATAAGCTG.....................................................................................................................................................	29	6	0.17	1	0	1	0	0	0
...........................................................................................................................................................................................................TTACTACACCCCTGCACGAAATA..........................................................................................................................................................	23	6	0.17	1	0	1	0	0	0
.......................................................................................................................................................................................................................TGCACGAAATAAGCTGTGAGCCACT............................................................................................................................................	25	20	0.15	3	0	3	0	0	0
...............................................................................................................................................................................................................TACACCCCTGCACGAAATAAGCTGTGAGC................................................................................................................................................	29	18	0.11	2	0	2	0	0	0
............................................................................................................................................................................................................................GAAATAAGCTGTGAGCCACTGTAC........................................................................................................................................	24	9	0.11	1	0	1	0	0	0
.........................................................................................................................................................................................................................CACGAAATAAGCTGTGAGCCACTG...........................................................................................................................................	24	20	0.10	2	0	2	0	0	0
.....................................................................................................................................................................................................................CCTGCACGAAATAAGCTGTGAGCCA..............................................................................................................................................	25	20	0.10	2	0	2	0	0	0
.........................................................................................................................................................................................................................CACGAAATAAGCTGTGAGCCACTGT..........................................................................................................................................	25	20	0.10	2	0	2	0	0	0
......................................................................................................................ATGATCACTAAATAAAACTGCATTTAAAT.........................................................................................................................................................................................................................................	29	11	0.09	1	0	1	0	0	0
.......................................................................................................................TGATCACTAAATAAAACTGCATTTAAA..........................................................................................................................................................................................................................................	27	13	0.08	1	0	1	0	0	0
......................................................................................................................ATGATCACTAAATAAAACTGCATT..............................................................................................................................................................................................................................................	24	13	0.08	1	0	1	0	0	0
...................................................................................................................TAAATGATCACTAAATAAAACTGCA................................................................................................................................................................................................................................................	25	14	0.07	1	0	1	0	0	0
................................................................................................................................................................................................................................TAAGCTGTGAGCCACTGTACA.......................................................................................................................................	21	15	0.07	1	0	0	0	1	0
..............................................................................................................................................................................................................CTACACCCCTGCACGAAATAAGCTG.....................................................................................................................................................	25	18	0.06	1	0	1	0	0	0
...........................................................................................................................................................................................................................CGAAATAAGCTGTGAGCCACTGTT.........................................................................................................................................	24	20	0.05	1	0	1	0	0	0
......................................................................................................................................................................................................................CTGCACGAAATAAGCTGTGAGCCAC.............................................................................................................................................	25	20	0.05	1	0	1	0	0	0
.........................................................................................................................................................................................................................CACGAAATAAGCTGTGAGC................................................................................................................................................	19	20	0.05	1	0	1	0	0	0
.........................................................................................................................................................................................................................CACGAAATAAGCTGTGAGCCACTGTA.........................................................................................................................................	26	20	0.05	1	0	0	0	1	0
....................................................................................................................................................................................................................CCCTGCACGAAATAAGCTGTGAGCCAC.............................................................................................................................................	27	20	0.05	1	0	1	0	0	0
................................................................................................................................................................................................................................TAAGCTGTGAGCCACTGT..........................................................................................................................................	18	20	0.05	1	0	0	0	0	1
........................................................................................................................................................................................................................GCACGAAATAAGCTGTGAGCCACTG...........................................................................................................................................	25	20	0.05	1	1	0	0	0	0
........................................................................................................................................................................................................................GCACGAAATAAGCTGTGAGCCAC.............................................................................................................................................	23	20	0.05	1	0	1	0	0	0

dp5

ATCAATCAA-----TCTA-------CA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A---------TTGTTAGCTATGTGACG-AGTTGGGTTGAAACGCGTAAAATTCCAGCCGAAAAGTCCA

Size

Hit Count

Total Norm

Total

M022
Male-body

M040
Female-body

M059
Embryo

M062
Head

V043
Embryo

V051
Head

V112
Male-body

SRR902010
Ovary

SRR902011
Testis

SRR902012
CNS imaginal disc

No Reads

droPer2

TTCTATCTT-----CATT--TAA--AATA-AA-----A---TCATT-----A--------------------T----GA----T----------ATA--TACCTCTCTGAAAAGGTAAAACTTCAAGCTTTATTCCCTCATTAAAATTTT--------TTTATTTTT----TTGTAGTTTAATG--------CAT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTA	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
No Reads

droAna3

TATTAAACA-----TATA-------GTTA--G-------ATA----ATA-AA--------------------TAAA-GTC--------------ATATATTTTA-AGT-------TATAACATAAAACTAAAATTCTGCGTTTAAATTTT--------TTCAAAATATC--GCTTAGTTTGGATAATAT---GATTTAAAGTTTTCGATTAGTGGTGGTTGAAATAAGCTTT-----ACTGTAAATCCACTGTA-----------------------AAT----------------GAGCCTTTTTCTC-TTT-----------------------------------------------------------------GT	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
.......................................................................................................................................................................................................................................T-----ACTGTAAATCCACTGTA-----------------------AAT----------------GAGCC...............................................................................	26	1	2.00	2	1	1	0	0	0	0
.....................................................................................................................................................................................................................................TTT-----ACTGTAAATCCACTGTA-----------------------AAT----------------GAGCC...............................................................................	28	1	2.00	2	0	2	0	0	0	0
...............................................................................................................................................................................................................................ATAAGCTTT-----ACTGTAAATCCACTGTA-----------------------.......................................................................................................	26	1	2.00	2	2	0	0	0	0	0
....................................................................................................................................................................................................................................CTTT-----ACTGTAAATCCACTGTA-----------------------AAT----------------GAGC................................................................................	28	1	1.00	1	1	0	0	0	0	0
.....................................................................................................................................................................................................................................................TCCACTGTA-----------------------AAT----------------GAGCCTTTTTCTC-TT....................................................................	27	1	1.00	1	1	0	0	0	0	0
...............................................................................................................................................................................................................................ATAAGCTTT-----ACTGTAAATCCACT.................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0
.............................................................................................................................................................................................................................................ACTGTAAATCCACTGTA-----------------------AAT----------------GAT.................................................................................	23	1	1.00	1	0	1	0	0	0	0
........................................................................................................................................................................................................................GGTTGAAATAAGCTTT-----ACTGTAAATC.....................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0
.............................................................................................................................................................................................................................................ACTGTAAATCCACTGTA-----------------------AAT----------------GAGCC...............................................................................	25	1	1.00	1	0	1	0	0	0	0
...........................................................................................................................................................................................................................TGAAATAAGCTTT-----ACTGTAAATCCACTG................................................................................................................................	28	1	1.00	1	1	0	0	0	0	0
..................................................................................................................................................................................................................................................AAATCCACTGTA-----------------------AAT----------------GAGCCT..............................................................................	21	1	1.00	1	0	1	0	0	0	0
..........................................................................................................................................................................................TAT---GATTTAAAGTTTTCGATTAGTG......................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0
.................................................................................................................................................................................................................TAGTGGTGGTTGAAATAAGCTTT-----ACT............................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0
................................................................................................................................................................................................................................TAAGCTTT-----ACTGTAAATCCACTGTA-----------------------.......................................................................................................	25	1	1.00	1	1	0	0	0	0	0
...........................................................................................................................................................................................................................TGAAATAAGCTTT-----ACTGTAAATC.....................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0
..............................................................................................................................................TAAATTTT--------TTCAAAATATC--GCTTAGTT.........................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0
.................................................................................................................................................................................................................TAGTGGTGGTTGAAATAAGCTTT-----AC.............................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0
...........................................................................................................................................................................................................TTCGATTAGTGGTGGTTGAAATAAGC.......................................................................................................................................................	26	2	0.50	1	0	1	0	0	0	0
.....................................................................................................................TAACATAAAACTAAAATTCTGCGTTTA............................................................................................................................................................................................................................................	27	2	0.50	1	0	1	0	0	0	0
...........................................................................................................................................................................................................TTCGATTAGTGGTGGTTGAAATAAGCT......................................................................................................................................................	27	2	0.50	1	0	1	0	0	0	0
......................................................................................................................................................................................................AAGTTTTCGATTAGTGGTGGTTG...............................................................................................................................................................	23	2	0.50	1	1	0	0	0	0	0
............................................................................................................................................................................................................TCGATTAGTGGTGGTTGAAATAAGCT......................................................................................................................................................	26	2	0.50	1	0	1	0	0	0	0
................................................................................................................................................................................................GATTTAAAGTTTTCGATTAGTGGTGGT.................................................................................................................................................................	27	2	0.50	1	0	0	1	0	0	0
......................................................................................................................................................................................................AAGTTTTCGATTAGTGGTGGTTGAAA............................................................................................................................................................	26	2	0.50	1	1	0	0	0	0	0
.........................................................................................................................................................................................................TTTTCGATTAGTGGTGGTTGAAATAAG........................................................................................................................................................	27	2	0.50	1	1	0	0	0	0	0
...................................................................................................................TATAACATAAAACTAAAATTCTGCGT...............................................................................................................................................................................................................................................	26	3	0.33	1	0	1	0	0	0	0
........................................................................................................................CATAAAACTAAAATTCTGCGTTT.............................................................................................................................................................................................................................................	23	3	0.33	1	0	1	0	0	0	0
...........................................................................................................T-------TATAACATAAAACTAAAATTCTGC.................................................................................................................................................................................................................................................	25	3	0.33	1	0	1	0	0	0	0
.....................................................................................................................TAACATAAAACTAAAATTCTGCGTT..............................................................................................................................................................................................................................................	25	3	0.33	1	0	1	0	0	0	0

droBip1

TATATATGA----------------------------------------------AGTTAA----------------------TAA------------ATATTT-AGT-------TTAAACATAGATCTAACATTGTGCGTTTAAATTTT--------TTGGAAAAATC--CTTTGGTTCATGTTTTACAGGCATTTAAAGTTTTTCACTGGGTCTGGTTGAAATAAGCTGTGAGCCACTGTATGTACTTT-----------------------------------------------------------------------------------------------------------------------GATTCATTTA	Size	Hit Count	Total Norm	Total
No Reads

droKik1

TCATTAAAAAAAGTTGTT--------------------------------------GTTAAAAATGAATAAACTAA-ACT--------------ATATTTTTTA-AGT-------TAAAATGTCAGCTTACCATTCTGCGTTTCATTTTT--------GTCGGTTGCTCGGTTATGGTTCAGAAGTTATAGCTGTTTTAAGTTGGAAATTAGGTGTGAGTCAAATAAGCTGTGAGCCACTGTAAATCCCTAGCAAGAATTGCTTAATTTGTGTTATTTGT------TGTGTA--T-GTGCCTT----------GTGTTGTTAAACCGATTTAT------------------------------GT----TGAAAAG---T	Size	Hit Count	Total Norm	Total
No Reads

droFic1

TGTTTAAGC-----CGTTTTTGAA-AA-T-AA-----A---TGATT-----T--------------------T----GT----T----------ACG--T-TAT-TCT-------AAATAAGTTAATCTTTCATTTGGCACCTTGTTTAT--------TCCAATATTCC--TTATAGTTTTACCGCTATGGGCGTTTAAAGTTAAAAGTATGCACTGCATACTTTAAGCTGTGAGCCACTGTAACTGCGTTTCG-----------------------AGT------AGTAT-----------ATCCATC-TTCGTGATGCC---------------ATAAATTCCGATCAGAATGCGCAAAATGTCGGGCAAA-------	Size	Hit Count	Total Norm	Total
No Reads

droEle1

AAATATTTA-----CAAA-------ATT---A-----TGAAA----ATTATATGAAGTTAC----------------------AAA------------CTAATA-AAT-------ATAACCATTACAAAAAGATCGTGCATTTAAATTTT--------GTTCATATCTT--GTTTGGTCTAGCTTTTATAGGCTGTATAAGTTT-TTTTGGTTGCTGGTTGAAATAAGCTGTGAGCCACTGTAGCTAATCATCA-----------------------T----------------------------------------------------------------------------------------------------AT	Size	Hit Count	Total Norm	Total
No Reads

droRho1

TAAGAAGTT-----CCTT-------GCTA-GA-------ATA----AA---------TAAA-----------TGAAAACAT--T------------ATTTTTGA-AGT-------TAAAACAACAGTTAACCTTTCTGCGTTTTATTTTT--------ATGCGTATCTC--TTATGGTTCAGGAGTTATACCTGTTTAATGTTGAAAATTAGGTGTGGGTCAAATAAGCTGTGAGCCACTGTAGCTATGAGTTT-----------------------AGG------GGCTTAGGGAAAATCCACTTAGC-TCT---------AATCCACCTAT---------------------------------------------GT	Size	Hit Count	Total Norm	Total
No Reads

droBia1

TAATTATTTT----T-GTTTTTATGATT---A-----AGAAA----ATCGC-------TTTCATTTAA---------------TAA------------AT---A-AGT-------TAATATTCCCTAATAAGATTCTGCATTAAAATTTT--------TCTGTTATCTC--TTATAGTTTAGCTGGAATAACGACTTAAACTTT-TTTAGGTAACTGCACGAAATAAGCTGCGAGCCACTGTATGTA-------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droTak1

AATGTTTAA------ATA-------AAT---A-----TGAAA----ATTATATGATGCTAA----------------------AAA------------ATAATA-AAT-------AGAAACATAACATCAAAATCGTGCATTTAAATTAT--------TTTCATATGTG--TCTTGGTTTAGCTTTTATAGGCTGTTGATTTT-TTTTTGGCAGGTGGTTGAAATAAGCTGTGAGCCACTGTATACC-----------------------------------------------------------------------------------------------------------------------------------AA	Size	Hit Count	Total Norm	Total
No Reads

droEug1

AATCGTTTT-----AGT-----------------------------------------------TTAA---------------TAAGCATGTTTATATTCC----------------------------------CTGAATTAAAATTTTTTTATATATTTGATATATT--TTTTAGTTTAGCAGGAATAACGACTCAAACATTTTATTGGTAGCTGCACGAATTAAGCTGCGATCCGCTGTAT----------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

dm3

TTCCAGCT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATGTAACC-AGTTGGGTTGAAACGCGAAAAATTCCAGCCGAAAAGTCCA

Size

Hit Count

Total Norm

Total

GSM154618
Ovary

GSM154620
Ovary

GSM154621
Ovary

GSM154622
Ovary

GSM180328
Head

GSM180329
Mixed-body

GSM180330
Embryo

GSM180331
Embryo

GSM180332
Embryo

GSM180333
Embryo

GSM180334
Larvae

GSM180335
Disc

GSM180336
Pupae

GSM180337
S2

GSM231091
Ovary

GSM239041
Head

GSM239050
Head

GSM239051
S2

GSM239052
S2

GSM246084
Head

GSM266765
S2

GSM280082
Ovary

GSM280083
Ovary

GSM280084
Ovary

GSM280085
Testis

GSM280086
Ovary

GSM280087
S2-NP

GSM280088
S2-NP

GSM312995
Head

GSM313160
Head

GSM313161
Head

GSM313162
Head

GSM313163
Head

GSM313164
Head

GSM313165
Head

GSM343287
Embryo

GSM379050
Ovary

GSM379051
Ovary

GSM379052
Ovary

GSM379053
Ovary

GSM379054
Ovary

GSM379055
Ovary

GSM379056
Ovary

GSM379057
Ovary

GSM379058
Ovary

GSM379059
Ovary

GSM379060
Ovary

GSM379061
Ovary

GSM379062
Ovary

GSM379063
Ovary

GSM379064
Ovary

GSM379065
Ovary

GSM379066
Ovary

GSM379067
Ovary

GSM424739
S2

GSM424740
S2

GSM424741
S2

GSM467729
Female-body

GSM467730
Female-body

GSM467731
Female-body

M002
CS

M003
Male-body

M004
Male-body

M005
ML-DmD32

M006
ML-DmD32

M029
OSC

M030
OSC

M031
OSC

M032
S2-R+

M033
S2-R+

M034
S2-R+

M035
S2-R+

M036
S2-R+

M037
S2-R+

M038
S2-R+

M039
S2-R+

M048
S2-R+

OSS2
OSS

OSS6
OSS

OSS7
OSS

OSS8
OSS

S1
Head

S10
Embryo

S11
Embryo

S12
Embryo

S13
Embryo

S14
Embryo

S15
S2-GMR

S16
Kc

S17
Larvae

S18
Larvae

S19
Pupae

S2
Head

S20
Pupae

S21
Disc

S22
Head

S23
Female-body

S24
Male-body

S25
Larvae

S26
Larvae

S27
Pupae

S28
Pupae

S29
Head

S3
Male-body

S30
S2-GMR

S31
S2

S32
S2

S33
Kc

S34
Kc

S35
Kc

S4
Female-body

S5
Disc

S6
Embryo

S7
Embryo

S8
S2

S9
Embryo

SRR001337
Head

SRR001338
Head

SRR001339
Head

SRR001340
Head

SRR001341
Head

SRR001342
Head

SRR001343
Head

SRR001344
Head

SRR001345
Head

SRR001346
Head

SRR001347
Head

SRR001348
Head

SRR001349
Head

SRR001664
Head

SRR010951
Ovary

SRR010952
Ovary

SRR010953
Ovary

SRR010954
Ovary

SRR010955
Ovary

SRR010956
Ovary

SRR010957
Ovary

SRR010958
Ovary

SRR010959
Ovary

SRR010960
Ovary

SRR014268
Embryo

SRR014269
Embryo

SRR014270
Embryo

SRR014271
Embryo

SRR014272
Embryo

SRR014273
Ovary

SRR014274
Ovary

SRR014275
Ovary

SRR014276
Ovary

SRR014277
Ovary

SRR014278
Ovary

SRR014279
Ovary

SRR014280
Ovary

SRR014281
Ovary

SRR014282
Ovary

SRR023197
S2

SRR023399
S2

SRR023400
S2

SRR023402
S2

SRR023407
S2

SRR029028
S2

SRR029029
S2

SRR029030
S2

SRR029031
S2

SRR029032
S2

SRR029033
S2

SRR029608
Head

SRR029633
Head

SRR030145
gb3

SRR031692
Head

SRR031693
Head

SRR031694
Head

SRR031696
Head

SRR031697
Head

SRR031698
Head

SRR031699
Head

SRR031700
Head

SRR031701
Head

SRR031702
Head

SRR031703
Head

SRR031704
Head

SRR032092
S2

SRR032093
S2

SRR032094
S2

SRR032095
S2-NP

SRR032096
S2-NP

SRR032152
Head

SRR060643
Testis

SRR060644
Ovary

SRR060645
Testis

SRR060646
Ovary

SRR060647
Ovary

SRR060648
Ovary

SRR060649
Ovary

SRR060650
Testis

SRR060651
Ovary

SRR060652
Testis

SRR060653
Ovary

SRR065151
Ovary

SRR065152
Ovary

SRR065153
Ovary

SRR065154
Ovary

SRR065155
Ovary

SRR065800
Ovary

SRR065801
Ovary

SRR065802
Ovary

SRR065803
Ovary

SRR065804
Ovary

SRR065805
Ovary

SRR065806
Ovary

SRR065807
Ovary

SRR097865
S2-NP

SRR097866
S2-NP

SRR097867
S2-NP

SRR298536
Ovary

SRR298537
Ovary

SRR298711
Ovary

SRR298712
Ovary

SRR317110
Ovary

SRR317111
Ovary

SRR317112
Ovary

SRR317113
Ovary

SRR317114
Ovary

SRR317115
Ovary

SRR317116
Ovary

SRR317117
Ovary

SRR341115
S2

SRR341116
S2

SRR341117
S2

SRR341118
S2

SRR351332
Mixed-body

SRR351333
Mixed-body

T004
OSC

T005
CME-L1

V001
Embryo

V002
Embryo

V003
S2

V006
Female-body

V007
Head

V008
S2

V009
CME-L1

V010
ML-DmD20-C5

V011
Sg4

V012
Male-body

V013
Head

V014
DTT

V015
DreRFHV

V018
Kc167

V019
GM2

V020
S2-R+

V021
ML-DmD21

V022
ML-DmD32

V023
Head

V024
Kc167

V025
S2-R+

V026
1182-2H

V027
ML-DmD21

V028
CME-W1-Cl.8+

V029
ML-DmD9

V030
ML-DmD8

V031
GM2

V032
S1

V033
CME-W1-Cl.8+

V034
ML-DmD16-C3

V035
ML-DmD32

V036
ML-DmD20-C5

V037
S2

V038
S2

V063
Ovary

V0632
Ovary

V064
Ovary

V0642
Ovary

V065
Ovary

V0652
Ovary

V066
Ovary

V0662
Ovary

V067
S2-NP

V073
mbn2

V074
S3

V075
ML-DmBG1-C1

V076
ML-DmBG3-C2

V077
Head

V078
Head

V079
Head

V080
Head

V081
Embryo

V082
Embryo

V083
Male-body

V084
Female-body

V085
CME-W2

V086
Female-body

V088
Ovary

V0882
Ovary

V089
Ovary

V0892
Ovary

V090
Male-body

V091
fGS/OSS

V092
Male-body

V093
Male-body

V094
S2-R+

V095
S2-R+

V096
Ovary

V097
Ovary

V098
Ovary

V125
ML-DmD9

V126
CME-L1

V127
G2

V128
S3

V129
ML-DmBG1-C1

V130
ML-DmBG3-C2

V131
ML-DmD16-C3

V132
ML-DmD32

V133
Sg4

V134
ML-DmD8

V135
CME-W2

V136
Male-body

V137
Head

V138
Male-body

V139
Female-body

V140
Female-body

V141
Female-body

V142
Female-body

V144
OSC

V145
S2

V146
S1

V147
1182-2H

V148
mbn2

GSM1528798
follicle cells

No Reads

droSim2

ATACTATATA----A-GA-------AC-T-ATATAAGT---TCGTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCACTAACCCA-----------CCTCTC---------TTTCCAGCTATGTAACC-AGTTGGGTTGAAACGCGTAAAATTCCAGCCGAAAAGTCCA

Size

Hit Count

Total Norm

Total

M023
Head

M024
Male-body

M025
Embryo

M053
Female-body

O001
Testis

O002
Head

SRR553485
Ovary

SRR553486
Ovary

SRR553487
Ovary

SRR553488
Ovary

SRR618934
Ovary

V044
Embryo

SRR902008
Ovary

SRR902009
Testis

SRR1275487
Male larvae

SRR1275485
Male prepupae

SRR1275483
Male prepupae

No Reads

droSec2

ATACTATATA----A-GA-------AC-T-ATATAAGT---TCGTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCACTAACCCA-----------TCTCTC---------TTTCCAGCTATGTAACC-AGTTGGGTTGAAACGCGTAAAATTCCAGCCGAAAAGTCCA	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
No Reads

droYak3

AAAATAATTA----A-AA-------AC-A-AAATA--------------------ATTTAA----------------------TAA------------ATAATA-TCT-------TGAAACATACAAGAAATATGTTGCGTTTAAATTTT--------GTTGATACAA---TTTTAGTTCAGCTTTAACAGACCGTTGAAGTTTCAGATAGACGCTGGTCGAAATAAGCTGTGAGCCACGGTACATA-------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
..................................................................................................................................................................................................GTTGAAGTTTCAGATAGACGC.....................................................................................................................................................................	21	6	0.17	1	0	1	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................TGAAGTTTCAGATAGACGCTGG..................................................................................................................................................................	22	6	0.17	1	0	1	0	0	0	0	0	0	0	0	0

droEre2

TAAAAATAA-----AATA-------AG------------------------------TTAG----------------------TAA------------ATATTA-TCT-------TGATACATACAAAAACTATTTTGCGTTAAAATTTTT-------GTTGATAAAAT--TTTTAGTTCAGCTTTTGCAGACCGTTGAAGTTTCAGATAGACGCTGGTTGAATTAAGCTGTGAGCCACTGTACATACGTAGTTG-A--------------------CTT-----CAACTTAGCCA-----------AACTTA---------TTATCGGCTCAATGATG-ATTTCGAGTAGTACGTG-----------------------	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
....................................................................................................................................................TTT-------GTTGATAAAAT--TTTTCAG..........................................................................................................................................................................................................	21	20	0.05	1	0	0	0	1	0	0	0

dgr_249

scaffold_15074:5242828-5242978 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-27.2	-26.8	-26.7