dgr_237

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------################################################## GAGTCCTTTTAACGAGCGACTCCCTAACGGAGTCAGATTGAGTTACAAAGGACCAAGTCAACAATGCCCCAGTGATACAAGTGTTACAAATAATGATAAATGCCAAGTGATGATGAGTGAAAAGCATAAGGTTTTCAATCTAAAAATATATAACATAAATCCATGTCTCTGTGGCTCTCTTGTCCTGTGGCACTCTTACAGTACAACATCAAGAAAAAGGAGGAAATTGTCGAGGCAATGCCACAGGAGGA ************************************************..............((((.(((.((((..((.((((((.(((..(((..(((............((.((((((........)))))).)).............)))..)))..)))...)))))).))..))))))).)))).........************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M041 female body	V109 male body
...................CTCCCTAACGGAGTCAGATTG...................................................................................................................................................................................................................	21	0	1	19.00	19	16	3
...................CTCCCTAACGGAGTCAGATTGA..................................................................................................................................................................................................................	22	0	1	12.00	12	11	1
....................TCCCTAACGGAGTCAGATTG...................................................................................................................................................................................................................	20	0	1	2.00	2	1	1
...................CTCCCTAACGGAGTCAGATT....................................................................................................................................................................................................................	20	0	1	2.00	2	2	0
....................TCCCTAACGGAGTCAGATTGA..................................................................................................................................................................................................................	21	0	1	2.00	2	1	1
...................CTCCCTAACGGAGTCAGA......................................................................................................................................................................................................................	18	0	1	1.00	1	1	0
....................TCCCTAACGGAGTCAGATTGAG.................................................................................................................................................................................................................	22	0	1	1.00	1	0	1
..........................................................................................................GTGATTAGGAGTGAAAAGC..............................................................................................................................	19	2	2	1.00	2	0	2
...................CTCCCTAACGGAGTAAGATTG...................................................................................................................................................................................................................	21	1	1	1.00	1	0	1
......................................................................................................................................................................................................................AAAAGGAGGAAATTGTCGA..................	19	0	1	1.00	1	1	0
...................CTCCCTAACGGAGTCAGATTGC..................................................................................................................................................................................................................	22	1	1	1.00	1	1	0
...................CTCCCTAACGGAGTCAGATTGAG.................................................................................................................................................................................................................	23	0	1	1.00	1	0	1
....................TCCCTAACGGAGTCAGATTGAAA................................................................................................................................................................................................................	23	2	1	1.00	1	1	0
..........................................................................................................GTGATTAGGAGTGAAAAGCT.............................................................................................................................	20	3	5	0.40	2	0	2
..........................................................................................................GTGATTAGGAGTGAAAAG...............................................................................................................................	18	2	6	0.17	1	0	1

CTCAGGAAAATTGCTCGCTGAGGGATTGCCTCAGTCTAACTCAATGTTTCCTGGTTCAGTTGTTACGGGGTCACTATGTTCACAATGTTTATTACTATTTACGGTTCACTACTACTCACTTTTCGTATTCCAAAAGTTAGATTTTTATATATTGTATTTAGGTACAGAGACACCGAGAGAACAGGACACCGTGAGAATGTCATGTTGTAGTTCTTTTTCCTCCTTTAACAGCTCCGTTACGGTGTCCTCCT ************************************************..............((((.(((.((((..((.((((((.(((..(((..(((............((.((((((........)))))).)).............)))..)))..)))...)))))).))..))))))).)))).........************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M041 female body
................................................................................................................................................................................................................AGTTCTTTTTCCTCCTTTAAC......................	21	0	1	1.00	1	1

Species	Coordinate	ID	Alignment
droGri2	scaffold_15074:2467993-2468243 -	dgr_237	GAGTCCTTTTAACGAGCGACTCCCTAACGGAGTCAGATTGAGTTACAAAGGACCAA-GTCAACAATGCCCCAG--------TG---------ATACAAGTGTTACAAATAATGATAAATGC------CAAGTGATGAT-----------------------------------------GAGTGAAAAGCAT-AA-GG----------------TTTTCA---ATCTAAAA---------ATATATAACATAAATCCATGTC----------------------------TCTGTGGCTCTCTTG------------------------------------------------TCCTGTGGCACTC-TTACAGTACAACATCAAGAAAAAGGAGGAAATTGTCGAGGCAATGCCACAGGAGGA
droVir3	scaffold_12822:1418848-1418955 +	dvi-mir-929	GAGTCCTTT-CACGAGCGACTCCCTAACGGAGTCAGATTGAATTACAAAGGACCCA-GACAACGAGTAAAAAT--------GTGC-CAAGT-GACAAA-----------------------------------GTGTT-----------------------------------------AAAC---AAG------------------T---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAATAAATG-----------------------
droMoj3	scaffold_6540:34020322-34020611 +		GAGTCCTTTTTTTTAACGACTCCCTAACGGAGTCAGATTGAATTTCAGAGGACCCA-GACAACGAAGAAGCGC--------GAGCACAAATGCAAATA------------ATGGTATACAGTGGAATAAAAAATTAATAAGTGAATCCAATTTACAGTGGTTAATATAACTGAATACACGTTCGTTA-CATTTTT-AG-----TTTCAGGCTGA-ATTCTTAAGCATAGTT--------------------GA----------------------------TCA--------TATATATATATCTAT-------------ATA------------------T------AACCTAT----------C-TTGCAGTACAATATCAAGAAAAAGGAAGAAATTGTGGAGGCTGCGCCACAGGAGGA
droWil2	scf2_1100000004902:9825404-9825639 -		GAGTCCTTTATATAAGCGACTCCCTAACGGAGTCAGATTGAATTACAAAGGAACAACAACAACAAAA-AGCCA----CGACCC---------ACCAAA-----------------------------------GTGTT-----------------------------------------AGACCTAAAGAAAATA-CC-----T-TCGAGCCAATATCCA---ACCTAACC--------------------AA------TTTTCTATACCCACACCCTTACACACATAAA--------CAC----------------------------------------A------------CCTTACAAACAC-CCACAGTACAATATCAAGAAGAAAGAGGAAATCGTTGAAGCGGCACCACAGGAAGA
dp5	2:24810647-24810900 -	dps-mir-929	GAGTCCTTTTATTGAGCGACTCCCTAACGGAGTCAGATTGAATTACCAAGGAAC-A-GACAACAGTGGAGCGAAAGACAAAGA---------ACCGAA-----------------------------------GTGT------------------------------------------AGTTGCTAAGAATACATGAATGTGCCCCTAGCCAATATG----------------------------------------------TGTATGTGTATTTTTGTATGTATATA--TTCTGATCTGCCAATCGTTTCGTTTTCATTC------------------T------CATCCAA--------CAT-ATACAGTACAACATCAAGAAGAAAGAGGAAATCGTTGAGGCGGCACCGCAAGAAGA
droPer2	scaffold_6:111442-111506 -		GAGTCCTTTTATTGAGCGACTCCCTAACGGAGTCAGATTGAATTACCAAGGAAC-A-GACAACAGTG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droAna3	scaffold_13340:11127767-11127978 +		GAGTCCTTTTAACGAGAGACTCCCTAACGGAGTCAGATTGAATTACAAAGGAGCGA-GACAACGACTACGTGG--------TGGCC------TAAAAA-----------------------------------GTGTT-----------------------------------------AGCCTCTAAGATAATA-T---------------------CTATGATCTAATCCATCCAACC----------TGA-------------------------------------CCTGATGATCT--------------------------------------------------TAACCCTTTACACAC-CTTTAGTACAACATCAAGAAGAAGGAGGAAATCGTCGAGGCTGCTCCCCAGGAGGA
droBip1	scf7180000396691:36449-36660 +		GAGTCCTTTTAACGAGCGACTCCCTAACGGAGTCAGATTGAATTACAAAGGAGCGA-GACAACGACTAAGGGG--------TTGCC------CAAAAA-----------------------------------GTGTT-----------------------------------------AGCCTTTAAGACAAAA-TC-----T-AAGATCTAA-TCCCACCAATCT------------------------GA-------------------------------------CCTGATGATCT--------------------------------------------------TAACCCTTTGCACAC-CTTTAGTACAACATCAAGAAGAAGGAGGAAATCGTCGAGGCTGCTCCCCAGGAGGA
droKik1	scf7180000302634:767784-767985 +		GAGTCCTTTGTACGAGCGACTCCCTAACGGAGTCAGATTGAATTACCAAGGAGAGA-GACAACAGTG-AG--A--------TTC--------CAGAGA-----------------------------------GTGTT-----------------------------------------AGGCGATAAGCAT-TA-GC---------CAGATCATTTC-------CTAATC----------------------------------------------------------------------------------------CTTCTAATCACATAATCTACCCGATCTCCCAT-------------------TAGTACAACATCAAGAAGAAGGAGGAAATCGTCGAGGCGGCCCCACAGGAAGA
droFic1	scf7180000454096:1242584-1242796 +		GAGTCCTTTTCTTGAGCGACTCCCTAACGGAGTCAGATTGAACTTCAAAGGAGCGA-GACATCGAGGGAGCGG--------CTGC----------CAA-----------------------------------GTGCT-----------------------------------------AGCTGATAAGAATGTA-G--------TCTAGCTCATTTGCACCGGTCTAATC--------------------AA-------------------------------------CCTGTTGAACTAACGCC-------------TTC------------------G------C-TTGAC----------T-ATTCAGTACAACATCAAGAAGAAGGAGGAAATCGTGGAGGCGGCGCCCCAGGAAGA
droEle1	scf7180000491104:1857484-1857705 +		GAGTCCTTTTCTCGAGCGACTCCCTAACGGAGTCAGATTGAGCTTCGAAGGAGCAA-GACATCGG-GGAGCAG--------CTG--------CCGAAA-----------------------------------GTGTT-----------------------------------------AGCCCATAAGAAAGTA-GA-----CCCCCAGTCAGTGCCCATCGGTCTAATC--------------------AA-------------------------------------CCTGTTGATCTGCCAAC-------------TCC-------------------------CACCAAC-----TCCCACCAT-TAGTACAACATCAAAAAGAAGGAGGAGATCGTGGAGGCGGCGCCCCAGGAAGA
droRho1	scf7180000777910:13914-14129 -		GAGTCCTTTTCATGAGCGACTCCCTAACGGAGTCAGATTGATCTACAAAGGAGAGA-GACAACAA-GGAGCAG--------CTG--------CCAAAA-----------------------------------GTGTT-----------------------------------------AGCCGATAAGAAAGTA-GA-----C-TCTAGCCAGCACCCACCGATCTAATT--------------------AA-------------------------------------CCTGTTGATCTACCAAT-------------T-C------------------C------CACTAAC----------C-ATTTAGTACAACATCAAGAAGAAGGAGGAAATCGTGGAGGCGGCGCCCCAAGAAGA
droBia1	scf7180000302098:364364-364580 -		GAGTCCTTTTAATGAGCGACTCCCTAACGGAGTCAGATTGAACTTCAAAGGAGCGA-GACAACAAAGGAGCAA--------CTG--------CCAAAA-----------------------------------GTGTT-----------------------------------------AGCCAATAAGAAAAT--GA-----C-TCACGACAGTTTTCAGAGTCCTAAAC--------------------AA-------------------------------------CTTCTTTATCTATCGAC-------------TTC------------------A------TATTAAT----------A-ATTTAGTATAACATCAAGAAGAAGGAGGAAATCGTGGAGGCGGCACCCCAAGAAGA
droTak1	scf7180000414441:35287-35504 -		GAGTCCTTTCAATGAGCGACTCCCTAACGGAGTCAGATTGAACTACAAAGGACCAA-GACAACAAAGGGAAAT--------CTT--------TAAAAA-----------------------------------GTGTT-----------------------------------------AGCTGATAAGAAAATA-GA-----C-TCTAGCCAATGTCCAGCGGTCTAATC--------------------AA-------------------------------------CCTGTTGATCTACCGAC-------------TTC------------------A------AATTAAC----------A-ATTCAGTACAACATCAAGAAGAAAGAGGAAATCGTGGAGGCGGCACCCCAAGAAGA
droEug1	scf7180000409759:55782-55998 +		GAGTCCTTATATCGAGCGACTCCCTAACGGAGTCAGATTGAATTTCAAAGGAGCA--AACAACAAAGGAGCAG--------TTC--------TTAAAA-----------------------------------GTGTT-----------------------------------------ATCTAATTAGAAATTA-CA-----C-TATAACCAATGTTCAACGATCTAATC--------------------AA-------------------------------------TCTGTTGATCTGCCAAC-------------CTC------------------A------CATTATT----------C-ATTCAGTACAACATTAAGAAAAAGGAGGAAATCGTAGAGGCGGCACCACAAGAAGA
dm3	chr3R:121124-121339 +	dme-mir-929	GAGTCCTTT-AATGAGCGACTCCCTAACGGAGTCAGATTGAGCTGCAAAGGAGCGA-CACAACAGAGGAGCAC--------TT---------AAAAAT-----------------------------------GTGTT-----------------------------------------AGCTGTTAAGATACCA-GA-----CTCCTAGCCAA-GCCCAGTGGTCTAATC--------------------AA-------------------------------------CCTATTGATCTATCGAC-------------TCC------------------A------CATTAAC----------C-ATTCAGTACAACATCAAGAAGAAGGAGGAGATCGTGGAGGCGGCCCCCCAAGAAGA
droSim2	3r:105621-105836 +	dsi-mir-929	GAGTCCTTT-AATGAGCGACTCCCTAACGGAGTCAGATTGAGCTACAAAGGAGCGA-GACAACAGAGGAGCAC--------TT---------AAAAAG-----------------------------------GTGTT-----------------------------------------AGCCGTTAAGATACCA-GA-----CCCCTAGCCAA-GCCCAGTGGTCTAATC--------------------AA-------------------------------------GCTGTTGATCTATCGAC-------------TCC------------------A------CATTAAC----------C-ATTCAGTACAACATCAAGAAGAAGGAGGAGATCGTGGAGGCGGCCCCCCAGGAAGA
droSec2	scaffold_6:240467-240682 +		GAGTCCTTT-AATGAGCGACTCCCTAACGGAGTCAGATTGAGCTACAAAGGAGCGA-GACAACAGAGGAGCAC--------TT---------AAAAAG-----------------------------------GTGTT-----------------------------------------AGCCGTTAAGATACCA-GA-----CCCCTAGCCAA-GCCCAGTGGTCTAATC--------------------AA-------------------------------------GCTGTTGATCTATCGAC-------------TCC------------------A------CATTAAC----------C-ATTCAGTACAACATCAAGAAGAAGGAGGAGATCGTGGAGGCGGCCCCCCAGGAAGA
droYak3	3R:481137-481347 +		GAGTCCTTT-AATGAACGACTCCCTAACGGAGTCAGATTGAGCTACAAAGGAGCGA-GACAACACAGGACCAC-----TAAAA---------AAAAAT-----------------------------------GTGTT-----------------------------------------AGCCGTTAAGATACTA-GA-----CCTCTGGTTAA---------GACTAATT--------------------AA-------------------------------------CCTGTTGATCTACCGAA-------------TTC------------------C------CATTAAC----------A-ATTCAGTACAACATCAAGAAAAAGGAGGAGATCGTGGAGGCGACCCCCCAAGAAGA
droEre2	scaffold_4770:471079-471294 +		GAGTCCTTC-CATAAGCGACTCCCTAACGGAGTCAGATTGAGCTACAAAGGAGCGA-GACAACACAGGTGCAC--------TT---------AAAAAG-----------------------------------GTGTT-----------------------------------------AGCCGTTAAGATACCA-GA-----CCTCTAGCCAA-GCCCAGCGGTCTAATC--------------------AA-------------------------------------CCTGTTGATCTACCGAC-------------TTC------------------A------CATTAAC----------C-ATTCAGTACAACATCAAGAAGAAGGAGGAGATCGTGGAGGCGGCCCCACAAGAAGA

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droGri2

GAGTCCTTTTAACGAGCGACTCCCTAACGGAGTCAGATTGAGTTACAAAGGACCAA-GTCAACAATGCCCCAG--------TG---------ATACAAGTGTTACAAATAATGATAAATGC------CAAGTGATGAT-----------------------------------------GAGTGAAAAGCAT-AA-GG----------------TTTTCA---ATCTAAAA---------ATATATAACATAAATCCATGTC----------------------------TCTGTGGCTCTCTTG------------------------------------------------TCCTGTGGCACTC-TTACAGTACAACATCAAGAAAAAGGAGGAAATTGTCGAGGCAATGCCACAGGAGGA	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
...................CTCCCTAACGGAGTCAGATTG...............................................................................................................................................................................................................................................................................................................................................................................................	21	1	19.00	19	16	3
...................CTCCCTAACGGAGTCAGATTGA..............................................................................................................................................................................................................................................................................................................................................................................................	22	1	12.00	12	11	1
....................TCCCTAACGGAGTCAGATTG...............................................................................................................................................................................................................................................................................................................................................................................................	20	1	2.00	2	1	1
...................CTCCCTAACGGAGTCAGATT................................................................................................................................................................................................................................................................................................................................................................................................	20	1	2.00	2	2	0
....................TCCCTAACGGAGTCAGATTGA..............................................................................................................................................................................................................................................................................................................................................................................................	21	1	2.00	2	1	1
...................CTCCCTAACGGAGTCAGA..................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	1	0
....................TCCCTAACGGAGTCAGATTGAG.............................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1
..................................................................................................................................................................................................................................................................................................................................................................................................AAAAGGAGGAAATTGTCGA..................	19	1	1.00	1	1	0
...................CTCCCTAACGGAGTCAGATTGC..............................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0
...................CTCCCTAACGGAGTCAGATTGAG.............................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1
....................TCCCTAACGGAGTCAGATTGAAA............................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	1	0

droVir3

GAGTCCTTT-CACGAGCGACTCCCTAACGGAGTCAGATTGAATTACAAAGGACCCA-GACAACGAGTAAAAAT--------GTGC-CAAGT-GACAAA-----------------------------------GTGTT-----------------------------------------AAAC---AAG------------------T---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GAATAAATG-----------------------	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
...................CTCCCTAACGGAGTCAGATTG...............................................................................................................................................................................................................................................................................................................................................................................................	21	1	7093.00	7093	5	30	379	3	0	2	0	0	0	0	0	0	0	0	522	317	147	330	574	246	4	811	767	1	0	0	1	1	5	6	1	8	0	1	0	0	0	1	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	18	2869	42	0
...................CTCCCTAACGGAGTCAGATTGA..............................................................................................................................................................................................................................................................................................................................................................................................	22	1	486.00	486	0	3	43	1	0	0	0	0	0	0	0	0	0	0	35	23	6	29	73	33	0	58	32	0	0	0	0	0	3	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	145	0	0
....................TCCCTAACGGAGTCAGATTG...............................................................................................................................................................................................................................................................................................................................................................................................	20	1	109.00	109	0	3	39	0	0	0	0	0	0	0	0	0	0	0	1	5	1	1	5	4	0	8	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	34	1	0
....................TCCCTAACGGAGTCAGATTGA..............................................................................................................................................................................................................................................................................................................................................................................................	21	1	69.00	69	0	2	2	0	0	0	0	1	0	0	0	0	0	0	6	4	1	5	5	3	0	10	6	0	0	0	0	0	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	19	1	0
...................CTCCCTAACGGAGTCAGATT................................................................................................................................................................................................................................................................................................................................................................................................	20	1	48.00	48	0	11	24	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	2	0	0	4	3	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0
...................CTCCCTAACGGAGTCAGATTGAA.............................................................................................................................................................................................................................................................................................................................................................................................	23	1	14.00	14	0	0	6	0	0	0	0	0	0	0	0	0	0	0	1	1	0	1	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0
......................CCTAACGGAGTCAGATTG...............................................................................................................................................................................................................................................................................................................................................................................................	18	1	13.00	13	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	3	0	1	1	0	0	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0
...................CTCCCTAACGGAGTCAGATTGAT.............................................................................................................................................................................................................................................................................................................................................................................................	23	1	11.00	11	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	3	0	1	0	0	0	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0
...................CTCCCTAACGGAGTCAGATTT...............................................................................................................................................................................................................................................................................................................................................................................................	21	1	9.00	9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	3	0	0
...................CTCCCTAACGGAGTCAGATTA...............................................................................................................................................................................................................................................................................................................................................................................................	21	1	8.00	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6	0	0
...................CTCCCTAACGGAGTCAGATTGT..............................................................................................................................................................................................................................................................................................................................................................................................	22	1	7.00	7	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0
...................CTCCCTAACGGAGTCAGATTGC..............................................................................................................................................................................................................................................................................................................................................................................................	22	1	7.00	7	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0
...................CTCCCTAACGGAGTCAGATTC...............................................................................................................................................................................................................................................................................................................................................................................................	21	1	6.00	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0
...................CTCCCTAACGGAGTCAGAT.................................................................................................................................................................................................................................................................................................................................................................................................	19	1	5.00	5	1	1	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0
....................TCCCTAACGGAGTCAGATT................................................................................................................................................................................................................................................................................................................................................................................................	19	1	5.00	5	0	1	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................TCCCTAACGGAGTCAGATTGAA.............................................................................................................................................................................................................................................................................................................................................................................................	22	1	4.00	4	0	0	1	0	0	0	0	0	0	0	0	0	0	0	2	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................CTCCCTAACGGAGTCAGA..................................................................................................................................................................................................................................................................................................................................................................................................	18	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................CTAACGGAGTCAGATTGA..............................................................................................................................................................................................................................................................................................................................................................................................	18	1	3.00	3	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0
...................CTCCCTAACGGAGTCAGATTGAC.............................................................................................................................................................................................................................................................................................................................................................................................	23	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................CTCCCTAACGGAGTCAGATCC...............................................................................................................................................................................................................................................................................................................................................................................................	21	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0
....................TCCCTAACGGAGTCAGATTGAAA............................................................................................................................................................................................................................................................................................................................................................................................	23	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................CTCCCTAACGGAGTCAGATTGACC............................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................CTAACGGAGTCAGATTGG..............................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................CTCCCTAACGGAGTCAGATC................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................CCTAACGGAGTCAGATTGA..............................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0
...................CTCCCTAACGGAGTCAGATTGATG............................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................CTCCCTAACGGAGTCAGATTGAACC...........................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......TT-CACGAGCGACTCCCTAACGGAGTCAG...................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................CTCCCTAACGGAGTCAGATCT...............................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0

droMoj3

GAGTCCTTTTTTTTAACGACTCCCTAACGGAGTCAGATTGAATTTCAGAGGACCCA-GACAACGAAGAAGCGC--------GAGCACAAATGCAAATA------------ATGGTATACAGTGGAATAAAAAATTAATAAGTGAATCCAATTTACAGTGGTTAATATAACTGAATACACGTTCGTTA-CATTTTT-AG-----TTTCAGGCTGA-ATTCTTAAGCATAGTT--------------------GA----------------------------TCA--------TATATATATATCTAT-------------ATA------------------T------AACCTAT----------C-TTGCAGTACAATATCAAGAAAAAGGAAGAAATTGTGGAGGCTGCGCCACAGGAGGA	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
...................CTCCCTAACGGAGTCAGATTG...............................................................................................................................................................................................................................................................................................................................................................................................	21	1	7028.00	7028	425	5	2801	3708	0	89
...................CTCCCTAACGGAGTCAGATTGA..............................................................................................................................................................................................................................................................................................................................................................................................	22	1	190.00	190	46	3	47	86	7	1
....................TCCCTAACGGAGTCAGATTGA..............................................................................................................................................................................................................................................................................................................................................................................................	21	1	141.00	141	13	4	53	67	3	1
....................TCCCTAACGGAGTCAGATTG...............................................................................................................................................................................................................................................................................................................................................................................................	20	1	112.00	112	42	0	33	35	0	2
...................CTCCCTAACGGAGTCAGATT................................................................................................................................................................................................................................................................................................................................................................................................	20	1	56.00	56	20	0	15	19	0	2
...................CTCCCTAACGGAGTCAGATTGT..............................................................................................................................................................................................................................................................................................................................................................................................	22	1	26.00	26	1	0	9	14	1	1
..................ACTCCCTAACGGAGTCAGATTGA..............................................................................................................................................................................................................................................................................................................................................................................................	23	1	24.00	24	13	0	1	8	2	0
...................CTCCCTAACGGAGTCAGATTT...............................................................................................................................................................................................................................................................................................................................................................................................	21	1	19.00	19	0	0	15	4	0	0
..................ACTCCCTAACGGAGTCAGATTG...............................................................................................................................................................................................................................................................................................................................................................................................	22	1	14.00	14	9	0	3	2	0	0
...................CTCCCTAACGGAGTCAGATTGAA.............................................................................................................................................................................................................................................................................................................................................................................................	23	1	11.00	11	5	0	2	3	1	0
...................CTCCCTAACGGAGTCAGATTA...............................................................................................................................................................................................................................................................................................................................................................................................	21	1	10.00	10	0	0	6	4	0	0
...................CTCCCTAACGGAGTCAGATTGAT.............................................................................................................................................................................................................................................................................................................................................................................................	23	1	10.00	10	0	0	4	6	0	0
...................CTCCCTAACGGAGTCAGAT.................................................................................................................................................................................................................................................................................................................................................................................................	19	1	5.00	5	1	0	0	1	3	0
...................CTCCCTAACGGAGTCAGATTC...............................................................................................................................................................................................................................................................................................................................................................................................	21	1	4.00	4	1	0	0	3	0	0
....................TCCCTAACGGAGTCAGATT................................................................................................................................................................................................................................................................................................................................................................................................	19	1	4.00	4	0	0	2	2	0	0
.....................CCCTAACGGAGTCAGATTG...............................................................................................................................................................................................................................................................................................................................................................................................	19	1	4.00	4	2	0	1	1	0	0
.....................CCCTAACGGAGTCAGATTGA..............................................................................................................................................................................................................................................................................................................................................................................................	20	1	3.00	3	2	0	0	0	1	0
...................CTCCCTAACGGAGTCAGATTGAG.............................................................................................................................................................................................................................................................................................................................................................................................	23	1	3.00	3	0	0	2	1	0	0
......................CCTAACGGAGTCAGATTGA..............................................................................................................................................................................................................................................................................................................................................................................................	19	1	3.00	3	0	0	2	1	0	0
......................CCTAACGGAGTCAGATTG...............................................................................................................................................................................................................................................................................................................................................................................................	18	1	3.00	3	0	0	1	2	0	0
.......................CTAACGGAGTCAGATTGA..............................................................................................................................................................................................................................................................................................................................................................................................	18	1	2.00	2	0	0	0	1	1	0
...................CTCCCTAACGGAGTCAGATTGC..............................................................................................................................................................................................................................................................................................................................................................................................	22	1	2.00	2	0	0	1	1	0	0
..................ACTCCCTAACGGAGTCAGATTGT..............................................................................................................................................................................................................................................................................................................................................................................................	23	1	2.00	2	0	0	1	1	0	0
..................ACTCCCTAACGGAGTCAGATT................................................................................................................................................................................................................................................................................................................................................................................................	21	1	2.00	2	2	0	0	0	0	0
...................CTCCCTAACGGAGTCAGATTGAAA............................................................................................................................................................................................................................................................................................................................................................................................	24	1	2.00	2	1	0	0	1	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................AAGGAAGAAATTGTGGAGGCTGC............	23	1	1.00	1	0	0	0	0	1	0
............................................................................................................................................................................................................................................................................................................................................................................................................AATTGTGGAGGCTGCGCCACAG.....	22	1	1.00	1	1	0	0	0	0	0
....................TCCCTAACGGAGTCAGATTGAA.............................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0
...................CTCCCTAACGGAGTCAGAAGC...............................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	1	0	0
..................ACTCCCTAACGGAGTCAGATTGAC.............................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	1	0
..................ACTCCCTAACGGAGTCAGATTGAAA............................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0
...................CTCCCTAACGGAGTCAGA..................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	1	0	0	0

droWil2

GAGTCCTTTATATAAGCGACTCCCTAACGGAGTCAGATTGAATTACAAAGGAACAACAACAACAAAA-AGCCA----CGACCC---------ACCAAA-----------------------------------GTGTT-----------------------------------------AGACCTAAAGAAAATA-CC-----T-TCGAGCCAATATCCA---ACCTAACC--------------------AA------TTTTCTATACCCACACCCTTACACACATAAA--------CAC----------------------------------------A------------CCTTACAAACAC-CCACAGTACAATATCAAGAAGAAAGAGGAAATCGTTGAAGCGGCACCACAGGAAGA	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
...................CTCCCTAACGGAGTCAGATTG...............................................................................................................................................................................................................................................................................................................................................................................................	21	1	2505.00	2505	93	152	9	89	2162
....................TCCCTAACGGAGTCAGATTGA..............................................................................................................................................................................................................................................................................................................................................................................................	21	1	191.00	191	22	4	0	23	142
...................CTCCCTAACGGAGTCAGATTGA..............................................................................................................................................................................................................................................................................................................................................................................................	22	1	88.00	88	5	19	0	29	35
....................TCCCTAACGGAGTCAGATTG...............................................................................................................................................................................................................................................................................................................................................................................................	20	1	61.00	61	2	21	0	3	35
....................TCCCTAACGGAGTCAGATTGAA.............................................................................................................................................................................................................................................................................................................................................................................................	22	1	22.00	22	2	2	0	8	10
...................CTCCCTAACGGAGTCAGATT................................................................................................................................................................................................................................................................................................................................................................................................	20	1	15.00	15	6	5	0	0	4
......................CCTAACGGAGTCAGATTGA..............................................................................................................................................................................................................................................................................................................................................................................................	19	1	15.00	15	1	0	1	1	12
.......................CTAACGGAGTCAGATTGA..............................................................................................................................................................................................................................................................................................................................................................................................	18	1	13.00	13	5	0	0	1	7
...................CTCCCTAACGGAGTCAGATTGAA.............................................................................................................................................................................................................................................................................................................................................................................................	23	1	12.00	12	3	1	0	2	6
...................CTCCCTAACGGAGTCAGAT.................................................................................................................................................................................................................................................................................................................................................................................................	19	1	11.00	11	10	1	0	0	0
...................CTCCCTAACGGAGTCAGATTGAT.............................................................................................................................................................................................................................................................................................................................................................................................	23	1	7.00	7	4	0	0	0	3
.....................CCCTAACGGAGTCAGATTGA..............................................................................................................................................................................................................................................................................................................................................................................................	20	1	4.00	4	0	1	0	0	3
...................CTCCCTAACGGAGTCAGATTGT..............................................................................................................................................................................................................................................................................................................................................................................................	22	1	4.00	4	2	1	0	0	1
....................TCCCTAACGGAGTCAGATTGAAA............................................................................................................................................................................................................................................................................................................................................................................................	23	1	3.00	3	1	0	0	1	1
....................TCCCTAACGGAGTCAGATTGAAT............................................................................................................................................................................................................................................................................................................................................................................................	23	1	3.00	3	3	0	0	0	0
...................CTCCCTAACGGAGTCAGA..................................................................................................................................................................................................................................................................................................................................................................................................	18	1	2.00	2	0	2	0	0	0
....................TCCCTAACGGAGTCAGATTGG..............................................................................................................................................................................................................................................................................................................................................................................................	21	1	2.00	2	2	0	0	0	0
...................CTCCCTAACGGAGTCAGATTC...............................................................................................................................................................................................................................................................................................................................................................................................	21	1	2.00	2	0	0	0	0	2
....................TCCCTAACGGAGTCAGATT................................................................................................................................................................................................................................................................................................................................................................................................	19	1	2.00	2	1	0	0	0	1
.....................CCCTAACGGAGTCAGATTG...............................................................................................................................................................................................................................................................................................................................................................................................	19	1	2.00	2	0	2	0	0	0
...................CTCCCTAACGGAGTCAGATTA...............................................................................................................................................................................................................................................................................................................................................................................................	21	1	2.00	2	0	0	0	0	2
..........................................................................................................................................................................................................................................................................................................................................................................................TATCAAGAAGAAAGAGGAAATC.......................	22	1	2.00	2	2	0	0	0	0
...................CTCCCTAACGGAGTCAGATTGAAC............................................................................................................................................................................................................................................................................................................................................................................................	24	1	2.00	2	2	0	0	0	0
..................ACTCCCTAACGGAGTCAGATTG...............................................................................................................................................................................................................................................................................................................................................................................................	22	1	2.00	2	0	1	0	0	1
...................CTCCCTAACGGAGTCAGATC................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0
....................TCCCTAACGGAGTCAGATTGT..............................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	1
.........................................ATTACAAAGGAACAACAACAACT.......................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0
....................TCCCTAACGGAGTCAGATTGAT.............................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	1	0
...................CTCCCTAACGGAGTCAGATTGC..............................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0
......................CCTAACGGAGTCAGATTG...............................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	1
...................CTCCCTAACGGAGTCAGT..................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................GAGGAAATCGTTGAAGCGGCAC..........	22	1	1.00	1	1	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................AATCGTTGAAGCGGCACCACAGGAAGA	27	1	1.00	1	0	0	0	1	0
....................TCCCTAACGGAGTCAGAT.................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0
...................CTCCCTAACGGAGTCAGATG................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	1
.........................................ATTACAAAGGAACAACAACAAC........................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	1
...................CTCCCTAACGGAGTCATTG.................................................................................................................................................................................................................................................................................................................................................................................................	19	6	0.33	2	0	0	0	0	2

dp5

GAGTCCTTTTATTGAGCGACTCCCTAACGGAGTCAGATTGAATTACCAAGGAAC-A-GACAACAGTGGAGCGAAAGACAAAGA---------ACCGAA-----------------------------------GTGT------------------------------------------AGTTGCTAAGAATACATGAATGTGCCCCTAGCCAATATG----------------------------------------------TGTATGTGTATTTTTGTATGTATATA--TTCTGATCTGCCAATCGTTTCGTTTTCATTC------------------T------CATCCAA--------CAT-ATACAGTACAACATCAAGAAGAAAGAGGAAATCGTTGAGGCGGCACCGCAAGAAGA	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
...................CTCCCTAACGGAGTCAGATTG...............................................................................................................................................................................................................................................................................................................................................................................................	21	1	2256.00	2256	1	456	1	21	16	1685	76	0	0	0
...................CTCCCTAACGGAGTCAGATTGA..............................................................................................................................................................................................................................................................................................................................................................................................	22	1	739.00	739	0	41	2	6	14	673	1	0	0	2
....................TCCCTAACGGAGTCAGATTG...............................................................................................................................................................................................................................................................................................................................................................................................	20	1	69.00	69	0	43	0	0	0	26	0	0	0	0
....................TCCCTAACGGAGTCAGATTGA..............................................................................................................................................................................................................................................................................................................................................................................................	21	1	54.00	54	0	9	0	2	6	35	1	0	0	1
...................CTCCCTAACGGAGTCAGATT................................................................................................................................................................................................................................................................................................................................................................................................	20	1	12.00	12	0	11	0	1	0	0	0	0	0	0
...................CTCCCTAACGGAGTCAGATTGAA.............................................................................................................................................................................................................................................................................................................................................................................................	23	1	11.00	11	0	5	0	1	1	4	0	0	0	0
...................CTCCCTAACGGAGTCAGATTGT..............................................................................................................................................................................................................................................................................................................................................................................................	22	1	10.00	10	0	2	0	0	0	8	0	0	0	0
......................CCTAACGGAGTCAGATTG...............................................................................................................................................................................................................................................................................................................................................................................................	18	1	4.00	4	0	0	0	0	0	4	0	0	0	0
...................CTCCCTAACGGAGTCAGATTGC..............................................................................................................................................................................................................................................................................................................................................................................................	22	1	4.00	4	0	0	0	0	0	4	0	0	0	0
......................CCTAACGGAGTCAGATTGA..............................................................................................................................................................................................................................................................................................................................................................................................	19	1	3.00	3	0	0	0	0	0	3	0	0	0	0
....................TCCCTAACGGAGTCAGATTGAA.............................................................................................................................................................................................................................................................................................................................................................................................	22	1	3.00	3	0	0	0	0	1	1	1	0	0	0
...................CTCCCTAACGGAGTCAGAT.................................................................................................................................................................................................................................................................................................................................................................................................	19	1	3.00	3	0	0	1	2	0	0	0	0	0	0
.....................CCCTAACGGAGTCAGATTG...............................................................................................................................................................................................................................................................................................................................................................................................	19	1	2.00	2	0	2	0	0	0	0	0	0	0	0
..................ACTCCCTAACGGAGTCAGATTG...............................................................................................................................................................................................................................................................................................................................................................................................	22	1	2.00	2	0	2	0	0	0	0	0	0	0	0
..................ACTCCCTAACGGAGTCAGATTGA..............................................................................................................................................................................................................................................................................................................................................................................................	23	1	2.00	2	0	1	0	1	0	0	0	0	0	0
.......................CTAACGGAGTCAGATTGAAA............................................................................................................................................................................................................................................................................................................................................................................................	20	1	2.00	2	0	0	0	0	0	0	0	0	0	2
....................TCCCTAACGGAGTCAGATTGG..............................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
....................TCCCTAACGGAGTCAGATTA...............................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	1	0	0	0	0
...................CTCCCTAACGGAGTCAGATTGAG.............................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	1	0	0	0	0
......................CCTAACGGAGTCAGATTGAA.............................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	1	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................GAAGAAAGAGGAAATCGTTGAGGC...............	24	1	1.00	1	0	0	0	0	1	0	0	0	0	0

droPer2

GAGTCCTTTTATTGAGCGACTCCCTAACGGAGTCAGATTGAATTACCAAGGAAC-A-GACAACAGTG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
...................CTCCCTAACGGAGTCAGATTG...............................................................................................................................................................................................................................................................................................................................................................................................	21	1	3906.00	3906	0	75	4	1277	2509	41
...................CTCCCTAACGGAGTCAGATTGA..............................................................................................................................................................................................................................................................................................................................................................................................	22	1	487.00	487	0	15	1	324	147	0
....................TCCCTAACGGAGTCAGATTGA..............................................................................................................................................................................................................................................................................................................................................................................................	21	1	43.00	43	2	0	0	19	22	0
....................TCCCTAACGGAGTCAGATTG...............................................................................................................................................................................................................................................................................................................................................................................................	20	1	42.00	42	0	9	0	14	19	0
...................CTCCCTAACGGAGTCAGATT................................................................................................................................................................................................................................................................................................................................................................................................	20	1	15.00	15	0	2	0	2	11	0
...................CTCCCTAACGGAGTCAGATTGT..............................................................................................................................................................................................................................................................................................................................................................................................	22	1	9.00	9	0	0	0	4	5	0
...................CTCCCTAACGGAGTCAGATTGAT.............................................................................................................................................................................................................................................................................................................................................................................................	23	1	5.00	5	0	0	0	1	4	0
...................CTCCCTAACGGAGTCAGATTT...............................................................................................................................................................................................................................................................................................................................................................................................	21	1	4.00	4	0	0	0	1	3	0
...................CTCCCTAACGGAGTCAGATTC...............................................................................................................................................................................................................................................................................................................................................................................................	21	1	4.00	4	0	0	0	1	3	0
...................CTCCCTAACGGAGTCAGATTA...............................................................................................................................................................................................................................................................................................................................................................................................	21	1	3.00	3	0	0	0	2	1	0
....................TCCCTAACGGAGTCAGATTGAAA............................................................................................................................................................................................................................................................................................................................................................................................	23	1	2.00	2	0	1	0	0	1	0
...................CTCCCTAACGGAGTCAGATTGC..............................................................................................................................................................................................................................................................................................................................................................................................	22	1	2.00	2	0	0	0	0	2	0
......................CCTAACGGAGTCAGATTG...............................................................................................................................................................................................................................................................................................................................................................................................	18	1	2.00	2	0	0	0	1	1	0
.......................CTAACGGAGTCAGATTGA..............................................................................................................................................................................................................................................................................................................................................................................................	18	1	2.00	2	0	0	0	0	1	1
......................CCTAACGGAGTCAGATTGA..............................................................................................................................................................................................................................................................................................................................................................................................	19	1	2.00	2	0	0	0	2	0	0
....................TCCCTAACGGAGTCAGATTGT..............................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	1	0
...................CTCCCTAACGGAGTCAGATGC...............................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	1	0
.....................CCCTAACGGAGTCAGATTGA..............................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	1	0
.....................CCCTAACGGAGTCAGATTG...............................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	1	0	0
...................CTCCCTAACGGAGTCAGATCA...............................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	1	0	0
...................CTCCCTAACGGAGTCAGATTGAA.............................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	1	0	0
...................CTCCCTAACGGAGTCAGATTGAG.............................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	1	0
....................TCCCTAACGGAGTCAGATTGAA.............................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	1	0

droAna3

GAGTCCTTTTAACGAGAGACTCCCTAACGGAGTCAGATTGAATTACAAAGGAGCGA-GACAACGACTACGTGG--------TGGCC------TAAAAA-----------------------------------GTGTT-----------------------------------------AGCCTCTAAGATAATA-T---------------------CTATGATCTAATCCATCCAACC----------TGA-------------------------------------CCTGATGATCT--------------------------------------------------TAACCCTTTACACAC-CTTTAGTACAACATCAAGAAGAAGGAGGAAATCGTCGAGGCTGCTCCCCAGGAGGA	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
...................CTCCCTAACGGAGTCAGATTG...............................................................................................................................................................................................................................................................................................................................................................................................	21	1	5341.00	5341	362	1	2	1684	46	3246
...................CTCCCTAACGGAGTCAGATTGA..............................................................................................................................................................................................................................................................................................................................................................................................	22	1	593.00	593	31	0	0	518	2	42
....................TCCCTAACGGAGTCAGATTG...............................................................................................................................................................................................................................................................................................................................................................................................	20	1	83.00	83	38	0	0	12	0	33
....................TCCCTAACGGAGTCAGATTGA..............................................................................................................................................................................................................................................................................................................................................................................................	21	1	63.00	63	8	3	0	16	0	36
...................CTCCCTAACGGAGTCAGATTT...............................................................................................................................................................................................................................................................................................................................................................................................	21	1	48.00	48	0	0	0	3	1	44
...................CTCCCTAACGGAGTCAGATT................................................................................................................................................................................................................................................................................................................................................................................................	20	1	43.00	43	16	0	0	22	0	5
...................CTCCCTAACGGAGTCAGATTC...............................................................................................................................................................................................................................................................................................................................................................................................	21	1	11.00	11	0	0	0	4	0	7
...................CTCCCTAACGGAGTCAGATTA...............................................................................................................................................................................................................................................................................................................................................................................................	21	1	9.00	9	0	0	0	0	0	9
...................CTCCCTAACGGAGTCAGATTGAA.............................................................................................................................................................................................................................................................................................................................................................................................	23	1	8.00	8	2	1	0	3	0	2
.......................CTAACGGAGTCAGATTGA..............................................................................................................................................................................................................................................................................................................................................................................................	18	1	8.00	8	0	0	0	2	0	6
...................CTCCCTAACGGAGTCAGATTGAT.............................................................................................................................................................................................................................................................................................................................................................................................	23	1	7.00	7	0	0	0	4	0	3
......................CCTAACGGAGTCAGATTGA..............................................................................................................................................................................................................................................................................................................................................................................................	19	1	7.00	7	0	0	0	0	0	7
...................CTCCCTAACGGAGTCAGATTGC..............................................................................................................................................................................................................................................................................................................................................................................................	22	1	6.00	6	0	0	0	6	0	0
...................CTCCCTAACGGAGTCAGATTGT..............................................................................................................................................................................................................................................................................................................................................................................................	22	1	6.00	6	1	0	0	3	0	2
...................CTCCCTAACGGAGTCAGATTGAG.............................................................................................................................................................................................................................................................................................................................................................................................	23	1	3.00	3	1	0	0	1	0	1
..................ACTCCCTAACGGAGTCAGATTG...............................................................................................................................................................................................................................................................................................................................................................................................	22	1	2.00	2	0	0	0	0	0	2
.....................CCCTAACGGAGTCAGATTGA..............................................................................................................................................................................................................................................................................................................................................................................................	20	1	2.00	2	1	0	0	0	0	1
..................................................................................................................................................................................................................................................................................................................................................................................................................CGAGGCTGCTCCCCAGGAGGA	21	1	2.00	2	0	0	0	0	0	2
....................TCCCTAACGGAGTCAGATT................................................................................................................................................................................................................................................................................................................................................................................................	19	1	2.00	2	0	0	0	0	0	2
...................CTCCCTAACGGAGTCAGATG................................................................................................................................................................................................................................................................................................................................................................................................	20	1	2.00	2	0	0	0	0	0	2
....................TCCCTAACGGAGTCAGATTGC..............................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	1
.....................CCCTAACGGAGTCAGATTG...............................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	1
...................CTCCCTAACGGAGTCAGATTGTT.............................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	1	0	0
.........................................ATTACAAAGGAGCGA-GACAACG.......................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0
...................CTCCCTAACGGAGTCAGATTGAAA............................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	1	0	0
...........ACGAGAGACTCCCTAACGGAGTCAGAA.................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	1
.......................CTAACGGAGTCAGATTGAA.............................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	1
...................CTCCCTAACGGAGTCAGATTGG..............................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0
......................CCTAACGGAGTCAGATTG...............................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	1	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................GTCGAGGCTGCTCCCCAGGAGGA	23	1	1.00	1	0	0	0	0	0	1
.........................AACGGAGTCAGATTGAATTAC.........................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	1

droBip1

GAGTCCTTTTAACGAGCGACTCCCTAACGGAGTCAGATTGAATTACAAAGGAGCGA-GACAACGACTAAGGGG--------TTGCC------CAAAAA-----------------------------------GTGTT-----------------------------------------AGCCTTTAAGACAAAA-TC-----T-AAGATCTAA-TCCCACCAATCT------------------------GA-------------------------------------CCTGATGATCT--------------------------------------------------TAACCCTTTGCACAC-CTTTAGTACAACATCAAGAAGAAGGAGGAAATCGTCGAGGCTGCTCCCCAGGAGGA	Size	Hit Count	Total Norm	Total
No Reads

droKik1

GAGTCCTTTGTACGAGCGACTCCCTAACGGAGTCAGATTGAATTACCAAGGAGAGA-GACAACAGTG-AG--A--------TTC--------CAGAGA-----------------------------------GTGTT-----------------------------------------AGGCGATAAGCAT-TA-GC---------CAGATCATTTC-------CTAATC----------------------------------------------------------------------------------------CTTCTAATCACATAATCTACCCGATCTCCCAT-------------------TAGTACAACATCAAGAAGAAGGAGGAAATCGTCGAGGCGGCCCCACAGGAAGA	Size	Hit Count	Total Norm	Total
No Reads

droFic1

GAGTCCTTTTCTTGAGCGACTCCCTAACGGAGTCAGATTGAACTTCAAAGGAGCGA-GACATCGAGGGAGCGG--------CTGC----------CAA-----------------------------------GTGCT-----------------------------------------AGCTGATAAGAATGTA-G--------TCTAGCTCATTTGCACCGGTCTAATC--------------------AA-------------------------------------CCTGTTGAACTAACGCC-------------TTC------------------G------C-TTGAC----------T-ATTCAGTACAACATCAAGAAGAAGGAGGAAATCGTGGAGGCGGCGCCCCAGGAAGA	Size	Hit Count	Total Norm	Total
No Reads

droEle1

GAGTCCTTTTCTCGAGCGACTCCCTAACGGAGTCAGATTGAGCTTCGAAGGAGCAA-GACATCGG-GGAGCAG--------CTG--------CCGAAA-----------------------------------GTGTT-----------------------------------------AGCCCATAAGAAAGTA-GA-----CCCCCAGTCAGTGCCCATCGGTCTAATC--------------------AA-------------------------------------CCTGTTGATCTGCCAAC-------------TCC-------------------------CACCAAC-----TCCCACCAT-TAGTACAACATCAAAAAGAAGGAGGAGATCGTGGAGGCGGCGCCCCAGGAAGA	Size	Hit Count	Total Norm	Total
No Reads

droRho1

GAGTCCTTTTCATGAGCGACTCCCTAACGGAGTCAGATTGATCTACAAAGGAGAGA-GACAACAA-GGAGCAG--------CTG--------CCAAAA-----------------------------------GTGTT-----------------------------------------AGCCGATAAGAAAGTA-GA-----C-TCTAGCCAGCACCCACCGATCTAATT--------------------AA-------------------------------------CCTGTTGATCTACCAAT-------------T-C------------------C------CACTAAC----------C-ATTTAGTACAACATCAAGAAGAAGGAGGAAATCGTGGAGGCGGCGCCCCAAGAAGA	Size	Hit Count	Total Norm	Total
No Reads

droBia1

GAGTCCTTTTAATGAGCGACTCCCTAACGGAGTCAGATTGAACTTCAAAGGAGCGA-GACAACAAAGGAGCAA--------CTG--------CCAAAA-----------------------------------GTGTT-----------------------------------------AGCCAATAAGAAAAT--GA-----C-TCACGACAGTTTTCAGAGTCCTAAAC--------------------AA-------------------------------------CTTCTTTATCTATCGAC-------------TTC------------------A------TATTAAT----------A-ATTTAGTATAACATCAAGAAGAAGGAGGAAATCGTGGAGGCGGCACCCCAAGAAGA	Size	Hit Count	Total Norm	Total
No Reads

droTak1

GAGTCCTTTCAATGAGCGACTCCCTAACGGAGTCAGATTGAACTACAAAGGACCAA-GACAACAAAGGGAAAT--------CTT--------TAAAAA-----------------------------------GTGTT-----------------------------------------AGCTGATAAGAAAATA-GA-----C-TCTAGCCAATGTCCAGCGGTCTAATC--------------------AA-------------------------------------CCTGTTGATCTACCGAC-------------TTC------------------A------AATTAAC----------A-ATTCAGTACAACATCAAGAAGAAAGAGGAAATCGTGGAGGCGGCACCCCAAGAAGA	Size	Hit Count	Total Norm	Total
No Reads

droEug1

GAGTCCTTATATCGAGCGACTCCCTAACGGAGTCAGATTGAATTTCAAAGGAGCA--AACAACAAAGGAGCAG--------TTC--------TTAAAA-----------------------------------GTGTT-----------------------------------------ATCTAATTAGAAATTA-CA-----C-TATAACCAATGTTCAACGATCTAATC--------------------AA-------------------------------------TCTGTTGATCTGCCAAC-------------CTC------------------A------CATTATT----------C-ATTCAGTACAACATTAAGAAAAAGGAGGAAATCGTAGAGGCGGCACCACAAGAAGA	Size	Hit Count	Total Norm	Total
No Reads

dm3

GAGTCCTTT-AATGAGCGACTCCCTAACGGAGTCAGATTGAGCTGCAAAGGAGCGA-CACAACAGAGGAGCAC--------TT---------AAAAAT-----------------------------------GTGTT-----------------------------------------AGCTGTTAAGATACCA-GA-----CTCCTAGCCAA-GCCCAGTGGTCTAATC--------------------AA-------------------------------------CCTATTGATCTATCGAC-------------TCC------------------A------CATTAAC----------C-ATTCAGTACAACATCAAGAAGAAGGAGGAGATCGTGGAGGCGGCCCCCCAAGAAGA	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
...................CTCCCTAACGGAGTCAGATTG...............................................................................................................................................................................................................................................................................................................................................................................................	21	1	43028.00	43028	0	0	0	0	73	2	0	0	0	1	0	2	3	0	0	3	0	0	2	3	0	0	0	1	3	0	11	3	6	18	19	539	447	6	4	0	1	0	0	0	0	0	0	1	0	1	0	0	0	0	1	1	1	1	0	0	0	37	12	13	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	2	1	0	101	2	0	0	0	0	0	0	4	3	18	179	0	17	592	21	41	1	0	12	14	1376	10	1	5	6	0	3	7	4	5	4	7	4	24	2	48	16	1	7	0	11	10	22	2	37	12	58	34	0	0	0	0	0	0	1	0	0	0	2	0	1	0	0	0	0	0	0	0	11	0	0	0	0	0	0	0	0	0	0	0	5	0	0	0	406	366	0	177	12	7	342	526	22	583	21	200	10	415	29	0	0	0	0	0	1163	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	3	8	2	0	0	0	1	0	0	1	0	5	0	0	0	0	0	0	0	0	48	42	0	166	2007	59	54	5	26	426	1712	0	238	216	0	2	8	4	791	227	4	2	4	5	1	2	1	24	8	58	4	4	2	0	2	16	1	6	2	9	4	7	3	2	107	0	62	4021	5083	5618	8484	2	119	220	98	1	50	1	1	0	3	345	15	330	211	3	24	0	1	3	1	9	1	63	2	8	26	5	13	1	0	61	3201	105	40	71	49	63	4	0	32	4	0	0
...................CTCCCTAACGGAGTCAGATTGA..............................................................................................................................................................................................................................................................................................................................................................................................	22	1	13456.00	13456	0	0	0	0	18	1	0	0	0	3	0	3	2	0	0	0	0	0	1	1	0	0	0	0	0	0	1	0	1	6	22	335	451	5	1	0	0	0	0	0	0	0	2	1	0	0	0	0	0	0	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6	5	2	4	30	0	0	0	2	0	0	1	2	12	10	53	5	14	105	18	66	4	3	69	99	442	4	0	1	5	0	0	3	2	14	1	4	2	11	3	706	26	4	29	0	6	7	28	1	198	49	206	171	0	0	0	0	0	0	0	0	0	0	3	0	1	0	0	0	1	0	0	0	20	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3112	2454	0	2083	4	1	93	568	25	366	8	101	2	185	3	0	0	0	0	0	313	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	29	5	1	0	0	1	2	0	0	0	2	0	0	0	0	0	0	0	0	224	50	0	0	3	0	1	0	7	35	46	0	12	42	0	2	0	0	26	51	3	1	0	0	1	0	0	2	0	3	0	0	1	2	0	0	0	0	0	0	0	0	0	0	14	0	3	15	24	59	58	0	35	11	3	0	0	0	0	0	0	6	1	3	10	0	0	0	0	0	0	1	0	1	0	1	0	0	0	0	0	0	17	2	2	1	1	0	0	0	0	0	0	0
....................TCCCTAACGGAGTCAGATTGAG.............................................................................................................................................................................................................................................................................................................................................................................................	22	1	4885.00	4885	0	0	0	0	5	0	0	0	0	1	0	0	0	0	0	3	1	0	2	1	0	0	0	0	0	0	0	1	0	1	4	104	77	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	15	0	0	0	0	0	0	0	1	1	1	26	0	1	15	2	16	0	3	6	5	121	0	0	0	0	0	1	0	1	5	1	7	0	2	3	41	14	2	9	0	37	11	52	2	40	9	27	49	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	107	103	0	84	1	0	98	85	4	113	1	98	0	193	24	0	0	0	0	0	226	1	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	1	0	0	3	7	3	0	0	0	0	0	2	3	0	7	0	0	0	0	0	0	0	0	94	42	0	12	65	0	5	0	10	64	45	0	30	13	0	1	0	1	158	9	0	1	1	0	0	0	1	1	0	3	0	0	0	0	0	1	0	3	0	0	0	0	0	0	26	1	7	250	374	246	281	3	129	101	66	0	0	0	0	1	1	106	5	89	149	3	3	0	1	5	0	9	1	53	0	3	3	0	28	1	0	21	324	36	20	39	19	16	1	0	0	3	0	0
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.....................CCCTAACGGAGTCAGATTGA..............................................................................................................................................................................................................................................................................................................................................................................................	20	1	13.00	13	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	1	0	1	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	2	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................CTCCCTAACGGAGTCAGATTGAC.............................................................................................................................................................................................................................................................................................................................................................................................	23	1	12.00	12	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	2	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................TCCCTAACGGAGTCAGATTGAT.............................................................................................................................................................................................................................................................................................................................................................................................	22	1	12.00	12	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	1	0	0	0
...................CTCCCTAACGGAGTCAGATTTC..............................................................................................................................................................................................................................................................................................................................................................................................	22	1	12.00	12	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	2	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................TCCCTAACGGAGTCAGATTGAC.............................................................................................................................................................................................................................................................................................................................................................................................	22	1	11.00	11	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
....................TCCCTAACGGAGTCAGATTGG..............................................................................................................................................................................................................................................................................................................................................................................................	21	1	10.00	10	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	1	0	0	0	0	0	0	0	0	0	1	0	3	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................TCCCTAACGGAGTCAGATTGT..............................................................................................................................................................................................................................................................................................................................................................................................	21	1	10.00	10	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

GAGTCCTTT-AATGAGCGACTCCCTAACGGAGTCAGATTGAGCTACAAAGGAGCGA-GACAACAGAGGAGCAC--------TT---------AAAAAG-----------------------------------GTGTT-----------------------------------------AGCCGTTAAGATACCA-GA-----CCCCTAGCCAA-GCCCAGTGGTCTAATC--------------------AA-------------------------------------GCTGTTGATCTATCGAC-------------TCC------------------A------CATTAAC----------C-ATTCAGTACAACATCAAGAAGAAGGAGGAGATCGTGGAGGCGGCCCCCCAGGAAGA	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
...................CTCCCTAACGGAGTCAGATTG...............................................................................................................................................................................................................................................................................................................................................................................................	21	1	369.00	369	154	0	2	27	4	168	0	0	0	0	0	13	0	0	0	0	1
...................CTCCCTAACGGAGTCAGATT................................................................................................................................................................................................................................................................................................................................................................................................	20	1	62.00	62	37	1	0	1	2	21	0	0	0	0	0	0	0	0	0	0	0
...................CTCCCTAACGGAGTCAGAT.................................................................................................................................................................................................................................................................................................................................................................................................	19	1	38.00	38	27	1	0	0	2	8	0	0	0	0	0	0	0	0	0	0	0
....................TCCCTAACGGAGTCAGATTGA..............................................................................................................................................................................................................................................................................................................................................................................................	21	1	33.00	33	23	0	1	0	0	4	0	1	2	0	0	1	0	1	0	0	0
...................CTCCCTAACGGAGTCAGATTGA..............................................................................................................................................................................................................................................................................................................................................................................................	22	1	30.00	30	9	0	1	2	2	9	0	0	1	2	0	4	0	0	0	0	0
...................CTCCCTAACGGAGTCAGA..................................................................................................................................................................................................................................................................................................................................................................................................	18	1	24.00	24	0	0	0	0	0	24	0	0	0	0	0	0	0	0	0	0	0
.......................CTAACGGAGTCAGATTGA..............................................................................................................................................................................................................................................................................................................................................................................................	18	1	10.00	10	9	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
....................TCCCTAACGGAGTCAGATTGAG.............................................................................................................................................................................................................................................................................................................................................................................................	22	1	9.00	9	2	2	0	1	0	1	0	0	0	1	0	2	0	0	0	0	0
....................TCCCTAACGGAGTCAGATTGAGT............................................................................................................................................................................................................................................................................................................................................................................................	23	1	7.00	7	3	0	3	1	0	0	0	0	0	0	0	0	0	0	0	0	0
....................TCCCTAACGGAGTCAGATTG...............................................................................................................................................................................................................................................................................................................................................................................................	20	1	4.00	4	1	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0
...................CTCCCTAACGGAGTCAGATTGAA.............................................................................................................................................................................................................................................................................................................................................................................................	23	1	3.00	3	2	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
......................CCTAACGGAGTCAGATTGA..............................................................................................................................................................................................................................................................................................................................................................................................	19	1	3.00	3	2	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................TCCCTAACGGAGTCAGATTGAA.............................................................................................................................................................................................................................................................................................................................................................................................	22	1	3.00	3	1	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0
....................TCCCTAACGGAGTCAGATTGAGC............................................................................................................................................................................................................................................................................................................................................................................................	23	1	2.00	2	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
....................TCCCTAACGGAGTCAGATT................................................................................................................................................................................................................................................................................................................................................................................................	19	1	2.00	2	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
....................TCCCTAACGGAGTCAGATTGAAA............................................................................................................................................................................................................................................................................................................................................................................................	23	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................CCCTAACGGAGTCAGATTGA..............................................................................................................................................................................................................................................................................................................................................................................................	20	1	2.00	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................CTAACGGAGTCAGATTGAA.............................................................................................................................................................................................................................................................................................................................................................................................	19	1	2.00	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................TCCCTAACGGAGTCAGAT.................................................................................................................................................................................................................................................................................................................................................................................................	18	1	2.00	2	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
...................CTCCCTAACGGAGTCAGATTGAG.............................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
......................CCTAACGGAGTCAGATTG...............................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................CTCCCTAACGGAGTCAGATTGAGT............................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
.....................CCCTAACGGAGTCAGATTG...............................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
....................TCCCTAACGGAGTCAGATTGAGA............................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................CCCTAACGGAGTCAGATTGG..............................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................TCCCTAACGGAGTCAGATTGT..............................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................CTCCCTAACGGAGTCAGATTT...............................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
...................CTCCCTAACGGAGTCAGATTGAC.............................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................CCCTAACGGAGTCAGATTGAGC............................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................CTAACGGAGTCAGATTGG..............................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................CTCCCTAACGGAGTCAGATTGG..............................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................CTCCCTAACGGAGTCAGAC.................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................CTCCCTAACGGAGTCAGATTGT..............................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSec2

GAGTCCTTT-AATGAGCGACTCCCTAACGGAGTCAGATTGAGCTACAAAGGAGCGA-GACAACAGAGGAGCAC--------TT---------AAAAAG-----------------------------------GTGTT-----------------------------------------AGCCGTTAAGATACCA-GA-----CCCCTAGCCAA-GCCCAGTGGTCTAATC--------------------AA-------------------------------------GCTGTTGATCTATCGAC-------------TCC------------------A------CATTAAC----------C-ATTCAGTACAACATCAAGAAGAAGGAGGAGATCGTGGAGGCGGCCCCCCAGGAAGA	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
...................CTCCCTAACGGAGTCAGATTG...............................................................................................................................................................................................................................................................................................................................................................................................	21	1	5632.00	5632	145	40	120	5327
...................CTCCCTAACGGAGTCAGATTGA..............................................................................................................................................................................................................................................................................................................................................................................................	22	1	145.00	145	22	2	63	58
....................TCCCTAACGGAGTCAGATTGA..............................................................................................................................................................................................................................................................................................................................................................................................	21	1	98.00	98	5	1	4	88
....................TCCCTAACGGAGTCAGATTG...............................................................................................................................................................................................................................................................................................................................................................................................	20	1	87.00	87	6	3	2	76
....................TCCCTAACGGAGTCAGATTGAG.............................................................................................................................................................................................................................................................................................................................................................................................	22	1	45.00	45	1	2	13	29
...................CTCCCTAACGGAGTCAGATT................................................................................................................................................................................................................................................................................................................................................................................................	20	1	25.00	25	6	0	0	19
...................CTCCCTAACGGAGTCAGATTGT..............................................................................................................................................................................................................................................................................................................................................................................................	22	1	8.00	8	0	1	0	7
...................CTCCCTAACGGAGTCAGATTGAA.............................................................................................................................................................................................................................................................................................................................................................................................	23	1	8.00	8	0	0	1	7
......................CCTAACGGAGTCAGATTG...............................................................................................................................................................................................................................................................................................................................................................................................	18	1	7.00	7	2	0	0	5
...................CTCCCTAACGGAGTCAGATTA...............................................................................................................................................................................................................................................................................................................................................................................................	21	1	6.00	6	0	0	0	6
...................CTCCCTAACGGAGTCAGATTGAG.............................................................................................................................................................................................................................................................................................................................................................................................	23	1	5.00	5	0	0	2	3
.......................CTAACGGAGTCAGATTGA..............................................................................................................................................................................................................................................................................................................................................................................................	18	1	4.00	4	0	0	0	4
...................CTCCCTAACGGAGTCAGATTGAT.............................................................................................................................................................................................................................................................................................................................................................................................	23	1	4.00	4	0	0	0	4
......................CCTAACGGAGTCAGATTGA..............................................................................................................................................................................................................................................................................................................................................................................................	19	1	4.00	4	0	0	1	3
...................CTCCCTAACGGAGTCAGATTT...............................................................................................................................................................................................................................................................................................................................................................................................	21	1	3.00	3	0	0	0	3
....................TCCCTAACGGAGTCAGATTGAGT............................................................................................................................................................................................................................................................................................................................................................................................	23	1	3.00	3	0	0	1	2
...................CTCCCTAACGGAGTCAGATTGC..............................................................................................................................................................................................................................................................................................................................................................................................	22	1	3.00	3	0	0	1	2
....................TCCCTAACGGAGTCAGATTGAGA............................................................................................................................................................................................................................................................................................................................................................................................	23	1	2.00	2	0	0	1	1
....................TCCCTAACGGAGTCAGATTGAAA............................................................................................................................................................................................................................................................................................................................................................................................	23	1	2.00	2	0	0	0	2
....................TCCCTAACGGAGTCAGATTGAA.............................................................................................................................................................................................................................................................................................................................................................................................	22	1	2.00	2	0	0	0	2
....................TCCCTAACGGAGTCAGATT................................................................................................................................................................................................................................................................................................................................................................................................	19	1	2.00	2	0	0	0	2
......................CCTAACGGAGTCAGATTGAG.............................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	1
.....................CCCTAACGGAGTCAGATTGAGC............................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0
..........AATGAGCGACTCCCTAACGGAGTCA....................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	1	0
...................CTCCCTAACGGAGTCAGATTGAAA............................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	1
......TTT-AATGAGCGACTCCCTAACGGAGTC.....................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	1	0
...................CTCCCTAACGGAGTCAGATTGAGT............................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	1
......................CCTAACGGAGTCAGATTGAGT............................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	1
...................CTCCCTAACGGAGTCAGATTC...............................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	1
..................ACTCCCTAACGGAGTCAGATTG...............................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	1
.....................CCCTAACGGAGTCAGATTGA..............................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0
....................TCCCTAACGGAGTCAGATTGG..............................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	1
.........................................GCTACAAAGGAGCGA-GACAACAG......................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	1
...................CTCCCTAACGGAGTCATTG.................................................................................................................................................................................................................................................................................................................................................................................................	19	15	0.13	2	0	0	0	2

droYak3

GAGTCCTTT-AATGAACGACTCCCTAACGGAGTCAGATTGAGCTACAAAGGAGCGA-GACAACACAGGACCAC-----TAAAA---------AAAAAT-----------------------------------GTGTT-----------------------------------------AGCCGTTAAGATACTA-GA-----CCTCTGGTTAA---------GACTAATT--------------------AA-------------------------------------CCTGTTGATCTACCGAA-------------TTC------------------C------CATTAAC----------A-ATTCAGTACAACATCAAGAAAAAGGAGGAGATCGTGGAGGCGACCCCCCAAGAAGA	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
...................CTCCCTAACGGAGTCAGATTG...............................................................................................................................................................................................................................................................................................................................................................................................	21	1	4517.00	4517	27	180	3	11	1536	2752	8	0	0	0	0
...................CTCCCTAACGGAGTCAGATTGA..............................................................................................................................................................................................................................................................................................................................................................................................	22	1	639.00	639	1	16	14	6	195	404	2	0	0	1	0
....................TCCCTAACGGAGTCAGATTGA..............................................................................................................................................................................................................................................................................................................................................................................................	21	1	161.00	161	19	4	4	3	43	82	6	0	0	0	0
....................TCCCTAACGGAGTCAGATTG...............................................................................................................................................................................................................................................................................................................................................................................................	20	1	77.00	77	1	22	0	0	22	32	0	0	0	0	0
...................CTCCCTAACGGAGTCAGATT................................................................................................................................................................................................................................................................................................................................................................................................	20	1	26.00	26	4	6	1	0	6	9	0	0	0	0	0
...................CTCCCTAACGGAGTCAGATTT...............................................................................................................................................................................................................................................................................................................................................................................................	21	1	18.00	18	0	0	0	0	10	8	0	0	0	0	0
....................TCCCTAACGGAGTCAGATTGAG.............................................................................................................................................................................................................................................................................................................................................................................................	22	1	17.00	17	0	0	3	0	4	8	1	0	0	1	0
...................CTCCCTAACGGAGTCAGATTGC..............................................................................................................................................................................................................................................................................................................................................................................................	22	1	12.00	12	0	0	0	0	0	12	0	0	0	0	0
..................ACTCCCTAACGGAGTCAGATTGA..............................................................................................................................................................................................................................................................................................................................................................................................	23	1	9.00	9	0	0	2	3	1	3	0	0	0	0	0
...................CTCCCTAACGGAGTCAGATTGT..............................................................................................................................................................................................................................................................................................................................................................................................	22	1	9.00	9	0	0	0	0	0	9	0	0	0	0	0
...................CTCCCTAACGGAGTCAGAT.................................................................................................................................................................................................................................................................................................................................................................................................	19	1	6.00	6	5	0	1	0	0	0	0	0	0	0	0
...................CTCCCTAACGGAGTCAGATTGAA.............................................................................................................................................................................................................................................................................................................................................................................................	23	1	6.00	6	0	1	1	1	1	2	0	0	0	0	0
...................CTCCCTAACGGAGTCAGATTC...............................................................................................................................................................................................................................................................................................................................................................................................	21	1	5.00	5	0	0	0	0	0	5	0	0	0	0	0
..................ACTCCCTAACGGAGTCAGATTG...............................................................................................................................................................................................................................................................................................................................................................................................	22	1	5.00	5	0	4	0	0	0	1	0	0	0	0	0
......................CCTAACGGAGTCAGATTG...............................................................................................................................................................................................................................................................................................................................................................................................	18	1	4.00	4	0	0	0	0	1	3	0	0	0	0	0
...................CTCCCTAACGGAGTCAGATTGAT.............................................................................................................................................................................................................................................................................................................................................................................................	23	1	4.00	4	0	0	0	0	3	1	0	0	0	0	0
.......................CTAACGGAGTCAGATTGA..............................................................................................................................................................................................................................................................................................................................................................................................	18	1	4.00	4	2	0	0	0	1	1	0	0	0	0	0
....................TCCCTAACGGAGTCAGATTGAGT............................................................................................................................................................................................................................................................................................................................................................................................	23	1	3.00	3	1	0	0	0	0	2	0	0	0	0	0
....................TCCCTAACGGAGTCAGATTGAA.............................................................................................................................................................................................................................................................................................................................................................................................	22	1	3.00	3	0	0	0	0	2	1	0	0	0	0	0
....................TCCCTAACGGAGTCAGAT.................................................................................................................................................................................................................................................................................................................................................................................................	18	1	2.00	2	2	0	0	0	0	0	0	0	0	0	0
......................CCTAACGGAGTCAGATTGA..............................................................................................................................................................................................................................................................................................................................................................................................	19	1	2.00	2	0	0	0	0	1	1	0	0	0	0	0
...................CTCCCTAACGGAGTCAGATTA...............................................................................................................................................................................................................................................................................................................................................................................................	21	1	2.00	2	0	0	0	0	2	0	0	0	0	0	0
...................CTCCCTAACGGAGTCAGATTGAC.............................................................................................................................................................................................................................................................................................................................................................................................	23	1	2.00	2	2	0	0	0	0	0	0	0	0	0	0
....................TCCCTAACGGAGTCAGATTGG..............................................................................................................................................................................................................................................................................................................................................................................................	21	1	2.00	2	1	0	0	0	0	1	0	0	0	0	0
....................TCCCTAACGGAGTCAGATTGAGC............................................................................................................................................................................................................................................................................................................................................................................................	23	1	2.00	2	0	0	1	0	0	1	0	0	0	0	0
...................CTCCCTAACGGAGTCAGA..................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.....................CCCTAACGGAGTCAGATTGAGC............................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0
.......................CTAACGGAGTCAGATTGT..............................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
......................CCTAACGGAGTCAGATTT...............................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0
...................CTCCCTAACGGAGTCAGATGT...............................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0

droEre2

GAGTCCTTC-CATAAGCGACTCCCTAACGGAGTCAGATTGAGCTACAAAGGAGCGA-GACAACACAGGTGCAC--------TT---------AAAAAG-----------------------------------GTGTT-----------------------------------------AGCCGTTAAGATACCA-GA-----CCTCTAGCCAA-GCCCAGCGGTCTAATC--------------------AA-------------------------------------CCTGTTGATCTACCGAC-------------TTC------------------A------CATTAAC----------C-ATTCAGTACAACATCAAGAAGAAGGAGGAGATCGTGGAGGCGGCCCCACAAGAAGA	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
...................CTCCCTAACGGAGTCAGATTG...............................................................................................................................................................................................................................................................................................................................................................................................	21	1	6750.00	6750	184	1	1427	7	143	4988	0
...................CTCCCTAACGGAGTCAGATTGA..............................................................................................................................................................................................................................................................................................................................................................................................	22	1	1530.00	1530	19	3	1343	6	1	158	0
....................TCCCTAACGGAGTCAGATTGA..............................................................................................................................................................................................................................................................................................................................................................................................	21	1	135.00	135	4	1	40	3	3	84	0
....................TCCCTAACGGAGTCAGATTG...............................................................................................................................................................................................................................................................................................................................................................................................	20	1	90.00	90	21	0	18	1	1	49	0
...................CTCCCTAACGGAGTCAGATTT...............................................................................................................................................................................................................................................................................................................................................................................................	21	1	25.00	25	1	0	4	0	0	20	0
...................CTCCCTAACGGAGTCAGATT................................................................................................................................................................................................................................................................................................................................................................................................	20	1	23.00	23	2	0	0	0	0	21	0
......................CCTAACGGAGTCAGATTGA..............................................................................................................................................................................................................................................................................................................................................................................................	19	1	21.00	21	0	0	3	0	0	18	0
....................TCCCTAACGGAGTCAGATTGAG.............................................................................................................................................................................................................................................................................................................................................................................................	22	1	20.00	20	1	0	9	2	0	8	0
.......................CTAACGGAGTCAGATTGA..............................................................................................................................................................................................................................................................................................................................................................................................	18	1	20.00	20	0	0	0	0	0	20	0
...................CTCCCTAACGGAGTCAGATTGAA.............................................................................................................................................................................................................................................................................................................................................................................................	23	1	18.00	18	2	0	9	0	0	7	0
...................CTCCCTAACGGAGTCAGATTGC..............................................................................................................................................................................................................................................................................................................................................................................................	22	1	15.00	15	0	0	15	0	0	0	0
...................CTCCCTAACGGAGTCAGATTGAT.............................................................................................................................................................................................................................................................................................................................................................................................	23	1	9.00	9	0	0	5	0	0	4	0
......................CCTAACGGAGTCAGATTG...............................................................................................................................................................................................................................................................................................................................................................................................	18	1	8.00	8	0	0	1	0	0	7	0
.....................CCCTAACGGAGTCAGATTG...............................................................................................................................................................................................................................................................................................................................................................................................	19	1	5.00	5	1	0	0	0	0	4	0
.....................CCCTAACGGAGTCAGATTGA..............................................................................................................................................................................................................................................................................................................................................................................................	20	1	5.00	5	0	1	2	0	0	2	0
....................TCCCTAACGGAGTCAGATTGAAA............................................................................................................................................................................................................................................................................................................................................................................................	23	1	4.00	4	0	0	0	0	0	4	0
...................CTCCCTAACGGAGTCAGATTGT..............................................................................................................................................................................................................................................................................................................................................................................................	22	1	4.00	4	0	0	4	0	0	0	0
...................CTCCCTAACGGAGTCAGATTGAG.............................................................................................................................................................................................................................................................................................................................................................................................	23	1	4.00	4	0	0	3	0	0	1	0
...................CTCCCTAACGGAGTCAGATTGG..............................................................................................................................................................................................................................................................................................................................................................................................	22	1	3.00	3	0	0	3	0	0	0	0
....................TCCCTAACGGAGTCAGATTGAA.............................................................................................................................................................................................................................................................................................................................................................................................	22	1	3.00	3	0	0	1	0	0	2	0
...................CTCCCTAACGGAGTCAGATTC...............................................................................................................................................................................................................................................................................................................................................................................................	21	1	2.00	2	0	0	1	0	0	1	0
...................CTCCCTAACGGAGTCAGATTA...............................................................................................................................................................................................................................................................................................................................................................................................	21	1	2.00	2	0	0	0	0	0	2	0
..................................................GAGCGA-GACAACACAGGTGC................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0
...................CTCCCTAACGGAGTCAGATTGAC.............................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0	0	0
............................................................................................................................................................................................................................................................................................................TACCGAC-------------TTC------------------A------CATTAAC----------C-ATT.....................................................	22	1	1.00	1	0	1	0	0	0	0	0
.........................................GCTACAAAGGAGCGA-GACAACACA.....................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	1	0
...................CTCCCTAACGGAGTCAGA..................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	1	0
...................CTCCCTAACGGAGTCAGATGA...............................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0
.........................................GCTACAAAGGAGCGA-GACG..........................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	1	0
....................TCCCTAACGGAGTCAGATTGAT.............................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0
......................CCTAACGGAGTCAGATTGAG.............................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0
....................TCCCTAACGGAGTCAGATTGC..............................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0
....................TCCCTAACGGAGTCAGAT.................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0	0
....................TCCCTAACGGAGTCAGATTT...............................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0
....................TCCCTAACGGAGTCAGATTGAGC............................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0
...................CTCCCTAACGGAGTCAGATTGCA.............................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0	0	0
...........ATAAGCGACTCCCTAACGGAGTCAGATTG...............................................................................................................................................................................................................................................................................................................................................................................................	29	1	1.00	1	0	0	0	0	0	1	0
.....................CCCTAACGGAGTCAGATTGAAA............................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0	0
....................TCCCTAACGGAGTCAGATTGAGT............................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................TACAACATCAAGAAGAAGGAGGA...........................	23	1	1.00	1	0	0	0	0	1	0	0

dgr_237

scaffold_15074:2468043-2468193 -

Known Ortholog

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads