dgr_230

Name	Class	Family	Strand
(CAAAC)n	Simple_repeat	Simple_repeat	+
AT_rich	Low_complexity	Low_complexity	+

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------################################################## ACATTCAAAAGTTCACCCAGGAATCAAACATATTATTACTGTGATTGTTGAAACTCTACTAAAAACAAATCAAACCAAATCAAACCAAATCAAACCAAAACTTAACTTTAACTCAAAATGGTGTTTTGCTTTTTAATATGAATTAACTATATTTATTCACTTAATTTGTTATTAATTTTAAATTTATCCCTTCTTCCGCAGATCGAGCTGGATGAGAACATGAAGTTCGATGAGATGATACTGGAGGCGGC ************************************************.........(((.(((((((.........................((((((.....................))))))..........(((((...........)))))....))))))).)))...........................************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M041 female body	V109 male body
...............CCCAGGAATCAAACATATTATT......................................................................................................................................................................................................................	22	0	1	3.00	3	2	1
................CCAGGAATCAAACATATTATT......................................................................................................................................................................................................................	21	0	1	3.00	3	3	0
...........................................................................................................................................................................................................................ATGAAGTTCGATGAGATGATA...........	21	0	1	1.00	1	0	1
...............CCCAGGAATCAAACATATTAT.......................................................................................................................................................................................................................	21	0	1	1.00	1	1	0
...............CCCAGGAATCAAACATATTATTA.....................................................................................................................................................................................................................	23	0	1	1.00	1	0	1
...............CCCAGGAATCAAACATAATATT......................................................................................................................................................................................................................	22	1	1	1.00	1	0	1
..............ACCCAGGAATCTAACATATG.........................................................................................................................................................................................................................	20	2	3	0.33	1	0	1

Species	Coordinate	ID	Alignment
droGri2	scaffold_15072:36355-36605 +	dgr_230	ACATTCAAAAGTTCACCCAGGAATCAAACATATTATTACTGTGATTGTTGAA-ACTCTACTAAAAACAAAT--CAAACCAAATCAAACCAAATCAAACCAAAACTTAAC-----------------TTTAACTC-------------------------------------------------------------------AAAATGGTGTTTTGC----TTTT--TAATATGAATTAACTAT--------------AT---------------------TTATTC------------------------------A----C-T--TAATT-----TGTTAT------------------TAAT-------TTTAA-----ATTTATCCCTT---------CTTCCGCAGATCGAGCTGGATGAGAACATGAAGTTCGATGAGATGATACTGGAGGCGGC
droVir3	scaffold_13049:6215414-6215679 +	dvi-mir-190	ACATTCAAAAGTTCACCCAGGAATCAAACATATTATTACTGTGATTGTTGAA-ACTCTACTAAACCA-----AC-------------------C------------AAAA----------CCAAAAC-----CA------------AAATCAAAACCAAAACCAAATCG----AATAA----------CGCAACTTA-ACTTAAATGGTGTTT-GC----TACTCTTAAT--------------CT---AATC--TA-----------------------ATCTTA------------------------------A----T-T--GAGCT-----CGAAATGGCTTTCAT---------TTAT-------CTAATCATCGCATTGCTTTCC----------ATTCACAGATCGAGCTGGATGAGAACATGAAATTCGATGAGATGATCCTGGAGGCAGC
droMoj3	scaffold_6680:4536962-4537243 +		ACATTCAAAAGTTCACCCAGGAATCAAACATATTATTACTGTGATCGCTTAA-ACTCTACTAAAAACGAA------------------------------------------------------ACTAAAACGAAAATAC------AAATTGAAACCAAAACAAAATTTTAAAAATAA----------CTAAACTAAAACTCAAATGGTGTTT-GC----TTATCT---A--------------T---------------AATGCTA-ATATAACTAGTT--TCCA------------------------------A----TTT--GATGC-----CAATAAGAC-TGCAT---------TTCCTGAGCT-AACTCATTTCAT-----------ACC----TATTCACAGATCGAGCTGGATGAGAACATGAAGTTCGACGAGATGATTCTGGAGGCTGC
droWil2	scf2_1100000004762:5214393-5214646 +	dwi_2058	ACATTCAAAAGTTCACCCAGGAATCAAACATATTATTACTGTGATCGTCGG--AATCTACTAAAAACCAATTCT-------------------C-------------GAT----------CTAAAACAAAACTA--------------------------------------------AACC------------------CCAAATGGTGATT-GC----CATCGA---T--TGATGGACAACTTGTCA-TCG--T--T---------------------GTTGTA------------------------------A---------AATC-TTAAA------------C-----------TAATTCTCTAATTGATTACTGT-TTTTTTGTTATATCTTTTCACATTTAGATTGAATTGGATGAGAATATGAAGTTTGATGAAATGATTTTGGAAGCGGC
dp5	XR_group3a:147487-147754 -	dps-mir-190	ACATTCAAGAGTTCACCCAGGAATCAAACATATTATTACTGTGATACCCGGA-AATCTACTAAACCC-----CCAAACCCCC-----------A------------AGCTCCCAAGCCCCCGAGGCCTGAACTAAACCCCCAACTA--------------------------------AAA----------------------AATGGTGTTT-GA----TAT------TATGACCTTACCCTTTGTTAACCT--TC-----------------------GTCATG------------------------------A---------GAGC-ACAAA------------CAT---------TAATCTT----CCCATCGTTGGCTTCTCTTCT--ACC----C--CGACAGATCGAACTGGACGAGAACATGAAGTTCGATGAGATGATCCTGGAGGCTGC
droPer2	scaffold_23:150848-151115 -	dpe_1194	ACATTCAAGAGTTCACCCAGGAATCAAACATATTATTACTGTGATACCCGGA-AATCTACTAAACCC-----CCAAACCCCC-----------A------------AGCTCCCAAGCCCCCGAGGCCTGAACTAAACCCCCAACTA--------------------------------AAA----------------------AATGGTGTTT-GA----TAT------TATGACCTTACCCTTTGTTACCCT--TC-----------------------GTCATG------------------------------A---------GAGC-ACAAA------------CAT---------TAATCTT----CCCATCGTTGGCTTCTCTTCT--ACC----C--CGGCAGATCGAACTGGACGAGAACATGAAGTTCGATGAGATGATCCTGGAGGCTGC
droAna3	scaffold_13337:8074664-8074937 -	dan_2494	ACATTCAAAAGTTCACCCAGGAATCAAACATATTATTACTGTGACTCTCGCC-AATCTACTAAAATA-----CA-------------------C------------AGCT----------TGAGACTAC-----------CAACTA--------------------------------AAATAATGAAAACA--------AACACTGGTGATT-GT----CCTTAATAATATG----------------CT----------------------ACTAGAT--TTAAGATTAAGATATCTTAATCTTAAGAAAAATCTTTAA-----GAAA-AAAAA------------CATCAA--ATAA-----------TTCATCTCCGCATTTCTTGTC------------ACACAGATCGAACTCGACGAGAACATGAAGTTCGACGAGATGATCCTGGAAGCCGC
droBip1	scf7180000396541:230717-230949 -		TCATTCAAAAGTTCACCCAGGAATCAAACATATTATTACTGTGACCCTCGCC-AATCTACTAAACTT-----CA-------------------C------------AGCT----------TGCGACCTCC-----------AACTA--------------------------------AACAA--GAAAGCA--------ACCACCGGTGATT-GT----CCTT--------------------TA---ATTT-------AAGGCA---------------------------------------------TATTCTTTCCA-A--GAT-------TGTCA------------A--ATAA-----------CTAATCCCTGCTTTTCTTGTC------------ACACAGATCGAGCTCGACGAGAACATGAAATTCGACGAGATGATCCTGGAAGCAGC
droKik1	scf7180000302474:425846-426068 -		ACATTCAAAAGTTCACCCAGGAATCAAACATATTATTACTGTGGCCCTCGCC-AATCTACTAAACCT-----CT-------------------C------------GGCC----------TGAAAACTCGACTA--------------------------------------------AAACC--GA----A--------ACGCCTGGTGACT-GT----TATG-----C--------------------CTTTCC--T---------------------GCTGCA------------------------------A----A------ATA-----TCTG-T-----------ACA-T-A-----------CTAATCCCTGACTTTTCTGCC---------CTGACACAGATCGAACTCGACGAGAATATGAAGTTTGACGAAATGATTCTGGAGGCCGC
droFic1	scf7180000453833:743505-743736 +		ACATTCAAAAGTTCACCCAGGAATCAAACATATTATTACTGTGACCCTCGCC-AATCTACTAAAACA-----CT-------------------C------------AGCT-------ACCCGTGATCACAACTA--------------------------------------------AAAC-------------------TGCCTGGTGATT-GT----TCTA-----T--------------T------TTGTC--TG---------TTTTACAAGCT--TTTA------------------------------A----T-T--CATTA-----TCTAAT-----------G--AAAT-----------TTCATCTCTGCTTTTTCCGTC------------ACACAGATCGAACTCGATGAGAACATGAAGTTTGACGAAATGATCCTGGAGGCCGC
droEle1	scf7180000491268:124675-124904 -		TCATTCAAAAGTTCACCCAGGAATCAAACATATTATTACTGTGACCCTCGCC-AATCTACTAAAACA-A---CT-------------------C------------AGCT----------CGAGACCTCGACTA--------------------------------------------AAAC-------------------CGCCTGGTGATT-GACTGTTC-A-----T--------------TG---CTTTTAC--TG---CC---------------CCGTTG------------------------------A----G-TC-CAGTT-----TCTAAT-----------G--GCAT-----------TCCGCCTTTGATTTTTCTGTC------------CCACAGATCGAGCTCGATGAGAACATGAAGTTTGACGAAATGATCCTGGAGGCCGC
droRho1	scf7180000779204:207720-207940 +		TCATTCAAAAGTTCACCCAGGAATCAAACATATTATTACTGTGACCCTCGCC-AATCTACTAAAACA-----CT-------------------C------------AGCT----------TGAGACCTCGACTA--------------------------------------------AAAC-------------------CGCCTGGTGATT-GT----TAT------T--------------TG---CTTTTAA--T---------------------GTCTCA------------------------------A----G-T--CAGTT-----TCTAAT-----------A--TTAT-----------TCCACATTTGATTCCTCTGCC------------ACACAGATTGAACTCGACGAGAACATGAAGTTTGACGAAATGATCCTGGAGGCCGC
droBia1	scf7180000302428:10499189-10499412 +		TCATTCAAAAGTTCACCCAGGAATCAAACATATTATTACTGTGACCCTCGCC-AATCTACTAAAACA-----AT-------------------C------------AGCT----------CTATATCTCGACTA--------------------------------------------AAAA-------------------CGCCTGGTGTTT-GT----TCA------T--------------TG---TT---------AACCCT---------------------------------------------TGTTTCGTCTA-T--CAATA-----TCTAAT-----------A--GAAT-----------TCCATCTCTGATTTTTCTGCC------------ACACAGATCGAACTCGACGAGAACATGAAGTTTGACGAAATGATCCTGGAGGCTGC
droTak1	scf7180000414445:149909-150108 -		TCATTCAAAAGTTCACCCAGGAATCAAACATATTATTACTGTGACCCTCGCTAAATCTACTAAAACA---------------------------------------------------------------------------------------------------------------AAAA-------------------CGCCTGGTGATT-GT----TC-A-----T--------------TG---TTTTCTC--TG---------T----------CCTTTA------------------------------A----G-TCACAGTA-----ACTAAT-----------A--GT----------------ATCTCTGATTTTTCTGCC------------ACACAGATTGAACTCGACGAGAACATGAAGTTTGACGAAATGATTTTGGAGGCCGC
droEug1	scf7180000409524:96384-96595 -		TCATTCAAAAGTTCACCCAGGAATCAAACATATTATTACTGTGACCCTCGCC-AATCTACTAAAAAA-----TT-------------------C------------AGC-----------------CTCAACTA--------------------------------------------AACA-------------------TGCCTGGTGATT-GT----TGTTCA---T--------------T---------------AACCCTTTGTTT--------GC-----------------------------------------T--CAGTA-----TCTAAT-----------ACAGTAC-----------TCCATCTCCGATTTTT----C------------ACACAGATTGAACTTGACGAAAACATGAAATTTGATGAAATGATTCTGGAGGCCGC
dm3	chr3L:8564948-8565167 +	dme-mir-190	TCATTCAAAAGTTCACCCAGGAATCAAACATATTATTACTGTGACCCTCGCC-AATCTACTAAAACA-----CT-------------------C------------AGCT----------CAAGAACTTAACTA--------------------------------------------AATT-------------------CCATTGGTGATC-GT----TTCA-----T--------------TC---TTTT--TC-----------------------GCCTCA------------------------------A----G-T--CACCA-----TGTAAT-----------A--ATAT-----------TTCACTTTTGATTTCTTTACC------------ACATAGATTGAACTCGACGAAAACATGAAGTTTGACGAAATGATCTTGGAGGCTGC
droSim2	3l:8354687-8354906 +	dsi-mir-190	TCATTCAAAAGTTCACCCAGGAATCAAACATATTATTACTGTGACCCTCGCC-AATCTACTAAAACA-----CT-------------------C------------AGCT----------CAAGAACTTAACTA--------------------------------------------AATT-------------------CCATTGGTGATT-GT----TTCA-----T--------------TC---TTTT--TC-----------------------GCCTCA------------------------------A----G-T--CAGCA-----TGTAAT-----------A--ATAT-----------TTCACCTTTGATTTCTCTACC------------ACATAGATTGAACTCGACGAAAACATGAAGTTTGACGAAATGATCTTGGAGGCTGC
droSec2	scaffold_0:844200-844419 +		TCATTCAAAAGTTCACCCAGGAATCAAACATATTATTACTGTGACCCTCGCC-AATCTACTAAAACA-----CT-------------------C------------AGCT----------CAAGAACTTAACTA--------------------------------------------AATT-------------------CCATTGGTGATT-GT----TTCA-----T--------------TC---TTTT--TC-----------------------ACTTCA------------------------------A----G-T--CAGCA-----TGTAAT-----------A--ATAT-----------ATCACCTTTGATTTCTCTACC------------ACATAGATTGAACTGGACGAAAACATGAAGTTTGACGAAATGATCTTGGAGGCTGC
droYak3	3L:3348503-3348723 -		TCATTCAAAAGTTCACCCAGGAATCAAACATATTATTACTGTGACCCTCGCC-AATCTACTAAAACA-----CT-------------------C------------AGCT----------CAAGATCTTGACTA--------------------------------------------AAAC------------------CCCATTGGTGATT-GT----TCTG-----T--------------TC---CTAT--TT-----------------------GCCTTA------------------------------A----G-T--CAGCA-----CGTAAT-----------A--ATAT-----------GTCATCTTTGCTTTCTCTGCC------------ACACAGATTGAACTCGACGAAAACATGAAGTTTGACGAAATGATCTTGGAGGCCGC
droEre2	scaffold_4784:5482310-5482531 -		TCATTCAAAAGTTCACCCAGGAATCAAACATATTATTACTGTAGCCTTCGCC-AATCTACTAAAACA-----CT-------------------C------------AGCT----------CGAGATCTTAACTA--------------------------------------------AACC-------------------CCATTGGTGATT-GT----TCTA-----T--------------TC---GTAT--TCAT---------------------ACATTC------------------------------A----G-T--AAGCA-----TGTAAT-----------A--ATAT-----------TTCATCTTTGATTTCTCTGCC------------ACACAGATTGAACTCGACGAAAACATGAAGTTCGACGAAATGATCTTGGAGGCCGC

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droGri2

ACATTCAAAAGTTCACCCAGGAATCAAACATATTATTACTGTGATTGTTGAA-ACTCTACTAAAAACAAAT--CAAACCAAATCAAACCAAATCAAACCAAAACTTAAC-----------------TTTAACTC-------------------------------------------------------------------AAAATGGTGTTTTGC----TTTT--TAATATGAATTAACTAT--------------AT---------------------TTATTC------------------------------A----C-T--TAATT-----TGTTAT------------------TAAT-------TTTAA-----ATTTATCCCTT---------CTTCCGCAGATCGAGCTGGATGAGAACATGAAGTTCGATGAGATGATACTGGAGGCGGC	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
...............CCCAGGAATCAAACATATTATT.......................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	3.00	3	2	1
................CCAGGAATCAAACATATTATT.......................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	3.00	3	3	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAAGTTCGATGAGATGATA...........	21	1	1.00	1	0	1
...............CCCAGGAATCAAACATATTAT........................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0
...............CCCAGGAATCAAACATATTATTA......................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1

droVir3

ACATTCAAAAGTTCACCCAGGAATCAAACATATTATTACTGTGATTGTTGAA-ACTCTACTAAACCA-----AC-------------------C------------AAAA----------CCAAAAC-----CA------------AAATCAAAACCAAAACCAAATCG----AATAA----------CGCAACTTA-ACTTAAATGGTGTTT-GC----TACTCTTAAT--------------CT---AATC--TA-----------------------ATCTTA------------------------------A----T-T--GAGCT-----CGAAATGGCTTTCAT---------TTAT-------CTAATCATCGCATTGCTTTCC----------ATTCACAGATCGAGCTGGATGAGAACATGAAATTCGATGAGATGATCCTGGAGGCAGC	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
...............CCCAGGAATCAAACATATTATTA......................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1814.00	1814	0	3	19	13	8	3	2	0	0	0	0	0	1	1	35	13	7	26	23	23	5	26	36	12	32	34	80	89	103	73	54	159	3	7	4	3	9	4	8	10	0	1	4	7	4	12	8	8	19	15	30	89	56	117	100	5	10	21	329	17	8	26	0
...............CCCAGGAATCAAACATATTATT.......................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1641.00	1641	2	26	68	13	4	5	3	0	0	0	0	0	3	1	114	45	21	64	68	34	4	92	76	2	34	42	83	41	82	108	51	117	3	7	7	5	16	3	6	7	0	2	0	5	1	3	6	5	4	6	6	26	18	32	41	4	11	23	139	12	24	16	0
...............CCCAGGAATCAAACATATTAT........................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	321.00	321	0	3	4	1	1	2	0	0	0	0	0	0	0	0	22	14	6	19	25	14	5	27	27	0	5	4	7	1	17	18	8	20	3	4	1	2	1	0	1	4	0	0	0	0	0	0	0	0	1	2	2	4	1	2	2	0	1	2	12	1	21	4	0
...............CCCAGGAATCAAACATATTATTAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	214.00	214	0	0	0	1	0	0	0	0	0	0	0	0	3	0	1	2	2	1	1	2	1	0	1	1	8	6	16	12	4	9	4	9	13	0	10	10	25	13	1	0	0	1	2	1	0	0	1	2	1	4	4	3	1	3	6	2	2	0	24	0	1	0	0
...............CCCAGGAATCAAACATATTATTAAA....................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	90.00	90	0	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0	0	1	6	4	11	9	0	1	0	1	9	0	9	6	10	4	1	0	1	2	0	1	1	1	0	0	1	0	0	2	1	1	0	0	0	0	4	0	0	0	0
................CCAGGAATCAAACATATTATT.......................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	37.00	37	0	0	5	1	0	0	0	0	0	0	0	0	0	0	2	0	2	2	0	1	0	1	0	0	0	0	2	2	2	5	0	3	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	2	1	0	0	0	0	0	5	0	0	0	0
...............CCCAGGAATCAAACATATTA.........................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	31.00	31	1	0	0	0	0	0	0	0	0	0	0	0	0	0	3	1	0	4	2	0	0	4	1	0	0	0	0	2	1	0	1	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	1	0	0	0	0	0	1	1	0	0	0	0	3	0	3	0	0
................CCAGGAATCAAACATATTATTA......................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	31.00	31	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	1	0	0	1	1	0	0	0	1	1	2	3	2	0	2	2	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	1	0	0	1	7	0	0	0	0
...............CCCAGGAATCAAACATATT..........................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	28.00	28	0	0	3	0	0	0	0	0	0	0	0	0	0	0	3	1	0	0	3	2	0	5	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	2	1	6	0	0
...............CCCAGGAATCAAACATATTATTC......................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	25.00	25	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	1	1	1	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	1	2	0	2	1	1	6	0	0	0	0
...............CCCAGGAATCAAACATATTATTAT.....................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	24.00	24	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	1	3	2	3	0	1	1	3	1	0	1	0	1	1	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	1	0	0
...............CCCAGGAATCAAACATATTATTT......................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	19.00	19	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	2	1	0	0	1	0	0	0	2	0	0	1	1	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	1	0
...............CCCAGGAATCAAACATATTATTAAAA...................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	8.00	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	3	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............CCCAGGAATCAAACATATTATC.......................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	6.00	6	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................CCAGGAATCAAACATATTAT........................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	5.00	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0
...............CCCAGGAATCAAACATATTAA........................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............CCCAGGAATCAAACATATTATTCAA....................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	3.00	3	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............CCCAGGAATCAAACATATTATTCA.....................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	3.00	3	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................CCAGGAATCAAACATATTATTAT.....................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
...............CCCAGGAATCAAACATATTATTTA.....................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0
...............CCCAGGAATCAAACATATTATTG......................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
................CCAGGAATCAAACATATTA.........................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................GCTGGATGAGAACATGAAATT........................	21	1	2.00	2	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............CCCAGGAATCAAACATATTATCC......................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............CCCAGGAATCAAACATATTATTACC....................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............CCCAGGAATCAAACATATTATTAACC...................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
...............CCCAGGAATCAAACATATTATA.......................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
................CCAGGAATCAAACATATTATTT......................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................CAGGAATCAAACATATTATT.......................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................CCAGGAATCAAACATATT..........................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............CCCAGGAATCAAACAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................	16	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0
.............CACCCAGGAATCAAACATATTATTA......................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATTCGATGAGATGATCCTGGAGGC...	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................ATCGCATTGCTTTCC----------ATTCACAG..................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1
....................................................................................................................................................................................................................................................................................................................................................................................................................................................CGATGAGATGATCCTGGAGGC...	21	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............ACCCAGGAATCAAACATATTATT.......................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAGATGATCCTGGAG.....	18	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................CGATGAGATGATCCTGGAGGCA..	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................CCAGGAATCAAACATATTATTAAA....................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTCGATGAGATGATCCTGGAGGC...	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............CCCAGGAATCAAACATATTATTAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

ACATTCAAAAGTTCACCCAGGAATCAAACATATTATTACTGTGATCGCTTAA-ACTCTACTAAAAACGAA------------------------------------------------------ACTAAAACGAAAATAC------AAATTGAAACCAAAACAAAATTTTAAAAATAA----------CTAAACTAAAACTCAAATGGTGTTT-GC----TTATCT---A--------------T---------------AATGCTA-ATATAACTAGTT--TCCA------------------------------A----TTT--GATGC-----CAATAAGAC-TGCAT---------TTCCTGAGCT-AACTCATTTCAT-----------ACC----TATTCACAGATCGAGCTGGATGAGAACATGAAGTTCGACGAGATGATTCTGGAGGCTGC	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
...............CCCAGGAATCAAACATATTATTA......................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1259.00	1259	14	234	10	30	908	63
...............CCCAGGAATCAAACATATTATT.......................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	699.00	699	42	88	22	37	462	48
...............CCCAGGAATCAAACATATTAT........................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	103.00	103	3	3	17	44	29	7
...............CCCAGGAATCAAACATATTATTAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	48.00	48	1	1	1	1	43	1
................CCAGGAATCAAACATATTATTA......................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	35.00	35	2	7	0	0	26	0
...............CCCAGGAATCAAACATATTATC.......................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	35.00	35	0	0	0	0	35	0
................CCAGGAATCAAACATATTATT.......................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	19.00	19	4	2	0	1	12	0
...............CCCAGGAATCAAACATATTA.........................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	19.00	19	2	3	0	3	8	3
...............CCCAGGAATCAAACATATTATTC......................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	18.00	18	4	0	0	1	13	0
...............CCCAGGAATCAAACATATT..........................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	11.00	11	1	2	0	4	3	1
.................CAGGAATCAAACATATTATT.......................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	11.00	11	2	0	0	0	9	0
...............CCCAGGAATCAAACATATTATTAT.....................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	8.00	8	0	0	0	0	8	0
...............CCCAGGAATCAAACATATTATTT......................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	7.00	7	0	0	0	0	7	0
.................CAGGAATCAAACATATTATTA......................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	5.00	5	0	0	0	1	4	0
...............CCCAGGAATCAAACATATTATTAAA....................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	4.00	4	0	0	0	0	4	0
....................GAATCAAACATATTATTA......................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	2.00	2	1	0	0	0	1	0
...............CCCAGGAATCAAACATATTATTATC....................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	2.00	2	0	0	0	0	2	0
...............CCCAGGAATCAAACATATTATA.......................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	2.00	2	0	1	0	1	0	0
................CCAGGAATCAAACATATTATC.......................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	1	0
...............CCCAGGAATCAAACATATTATTACGCC..................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	1	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................GCTGGATGAGAACATGAAGTT........................	21	1	1.00	1	0	0	0	0	0	1
.........................................................................................................................................................................................................................................................................................................................................................................................................................GATCGAGCTGGATGAGAA.................................	18	1	1.00	1	1	0	0	0	0	0
...............CCCAGGAATCAAACATATTAC........................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	1	0
................CCAGGAATCAAACATATTAT........................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	1	0
................CCAGGAATCAAACATATTATTAAC....................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	1	0
............................................................................................................................................................................................................................................................................................................................................................................................................................CGAGCTGGATGAGAACATGAAGTTCGAC....................	28	1	1.00	1	1	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAGATGATTCTGGAGGC...	18	1	1.00	1	0	0	0	0	0	1
..........................................................................................................................................................................................................................................................................................................................................................................................................................ATCGAGCTGGATGAGAACATGAAGTT........................	26	1	1.00	1	0	0	0	0	0	1
...................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAGAACATGAAGTTCGACGAG.................	24	1	1.00	1	1	0	0	0	0	0
...............CCCAGGAATCAAACATATTATTG......................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	1	0
................CCAGGAATCAAACATATTATTAAA....................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0
................CCAGGAATCAAACATATTATTAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................CGAGCTGGATGAGAACATGAAGTT........................	24	1	1.00	1	1	0	0	0	0	0
...............CCCAGGAATCAAACATATTATCC......................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	1	0
..................AGGAATCAAACATATTATTA......................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	1	0
..................AGGAATCAAACATATTATT.......................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0
...................GGAATCAAACATATTATTA......................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	1	0
................CCAGGAATCAAACATATTATTT......................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	1	0

droWil2

ACATTCAAAAGTTCACCCAGGAATCAAACATATTATTACTGTGATCGTCGG--AATCTACTAAAAACCAATTCT-------------------C-------------GAT----------CTAAAACAAAACTA--------------------------------------------AACC------------------CCAAATGGTGATT-GC----CATCGA---T--TGATGGACAACTTGTCA-TCG--T--T---------------------GTTGTA------------------------------A---------AATC-TTAAA------------C-----------TAATTCTCTAATTGATTACTGT-TTTTTTGTTATATCTTTTCACATTTAGATTGAATTGGATGAGAATATGAAGTTTGATGAAATGATTTTGGAAGCGGC	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
...............CCCAGGAATCAAACATATTATTA......................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	2946.00	2946	41	11	6	1739	1149
...............CCCAGGAATCAAACATATTATT.......................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	2706.00	2706	74	20	11	685	1916
...............CCCAGGAATCAAACATATTAT........................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	262.00	262	19	3	2	28	210
...............CCCAGGAATCAAACATATTA.........................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	137.00	137	3	2	1	37	94
...............CCCAGGAATCAAACATATT..........................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	91.00	91	0	0	0	6	85
...............CCCAGGAATCAAACATATTATTAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	40.00	40	1	1	0	24	14
................CCAGGAATCAAACATATTATT.......................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	29.00	29	0	2	0	8	19
................CCAGGAATCAAACATATTATTA......................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	26.00	26	0	1	0	20	5
...............CCCAGGAATCAAACATATTATTAAA....................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	10.00	10	0	1	0	7	2
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAAATGATTTTGGAAGC...	20	1	9.00	9	3	0	4	1	1
...............CCCAGGAATCAAACATATTATTAT.....................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	5.00	5	1	1	0	1	2
...............CCCAGGAATCAAACATATTATA.......................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	5.00	5	0	0	0	2	3
....................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATGAAATGATTTTGGAAGC...	21	1	4.00	4	0	0	2	2	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAAATGATTTTGGAAGC...	19	1	4.00	4	0	0	3	1	0
...............CCCAGGAATCAAACATATTATTT......................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	3.00	3	1	2	0	0	0
.................CAGGAATCAAACATATTATTA......................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	3.00	3	0	0	0	2	1
.................CAGGAATCAAACATATTATT.......................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	2.00	2	0	0	0	0	2
...............CCCAGGAATCAAACATATTATTG......................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	2.00	2	0	0	0	2	0
...............CCCAGGAATCAAACATATTATC.......................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	2.00	2	0	0	0	0	2
................CCAGGAATCAAACATATT..........................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	2.00	2	0	0	0	0	2
...............................................................................................................................................................................................................................................................................................................................................................................................................................ATTGGATGAGAATATGAAGG.........................	20	1	1.00	1	1	0	0	0	0
...............CCCAGGAATCAAACATATTATTATA....................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	1	0
...............CCCAGGAATCAAACATATTC.........................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	1
.............................................................................................................................................................................................................................................................................................................................................................................................................................GAATTGGATGAGAATATGAAG..........................	21	1	1.00	1	1	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAAATGATTTTGGAAGCG..	20	1	1.00	1	0	1	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAGAATATGAAGTTTGAT....................	21	1	1.00	1	0	0	1	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................GGATGAGAATATGAAGTTTGAT....................	22	1	1.00	1	1	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................AATTGGATGAGAATATGAAGTTT.......................	23	1	1.00	1	0	0	0	1	0
................CCAGGAATCAAACATATTAT........................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	1	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................GATTGAATTGGATGAGAATATGAAGT.........................	26	1	1.00	1	0	0	0	1	0
...............CCCAGGAATCAAACATATTATTC......................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	1
................CCAGGAATCAAACATATTA.........................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	1
.................CAGGAATCAAACATATTA.........................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	1
..............ACCCAGGAATCAAACATATTATT.......................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	1
.................CAGGAATCAAACATATTAT........................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	1
..........................................................................................................................................................................................................................................................................................................................................................................................................................ATTGAATTGGATGAGAATATGAAGTT........................	26	1	1.00	1	0	0	1	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................GATTGAATTGGATGAGAATAT..............................	21	1	1.00	1	0	0	1	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................GATTGAATTGGATGAGAATATG.............................	22	1	1.00	1	1	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGATGAAATGATTTTGGA......	20	1	1.00	1	0	0	0	1	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................TATGAAGTTTGATGAAATG..............	19	1	1.00	1	1	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................GATTGAATTGGATGAGAA.................................	18	1	1.00	1	0	1	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................AGATTGAATTGGATGAGG..................................	18	3	0.33	1	0	0	0	0	1

dp5

ACATTCAAGAGTTCACCCAGGAATCAAACATATTATTACTGTGATACCCGGA-AATCTACTAAACCC-----CCAAACCCCC-----------A------------AGCTCCCAAGCCCCCGAGGCCTGAACTAAACCCCCAACTA--------------------------------AAA----------------------AATGGTGTTT-GA----TAT------TATGACCTTACCCTTTGTTAACCT--TC-----------------------GTCATG------------------------------A---------GAGC-ACAAA------------CAT---------TAATCTT----CCCATCGTTGGCTTCTCTTCT--ACC----C--CGACAGATCGAACTGGACGAGAACATGAAGTTCGATGAGATGATCCTGGAGGCTGC	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
...............CCCAGGAATCAAACATATTATTA......................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	280.00	280	0	7	29	13	205	5	14	1	0	6
...............CCCAGGAATCAAACATATTATT.......................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	273.00	273	0	67	32	38	110	4	14	0	0	8
...............CCCAGGAATCAAACATATTAT........................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	29.00	29	1	6	1	8	3	5	5	0	0	0
...............CCCAGGAATCAAACATATTA.........................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	9.00	9	0	1	0	0	4	3	1	0	0	0
................CCAGGAATCAAACATATTATT.......................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	9.00	9	0	5	0	0	2	1	1	0	0	0
...............CCCAGGAATCAAACATATTATC.......................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	8.00	8	0	0	4	4	0	0	0	0	0	0
...............CCCAGGAATCAAACATATTATTAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	5.00	5	0	0	0	2	1	0	0	0	2	0
................CCAGGAATCAAACATATTATTA......................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	4.00	4	0	1	1	0	2	0	0	0	0	0
...............CCCAGGAATCAAACATATT..........................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	3.00	3	0	0	0	0	1	2	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................GAACTGGACGAGAACATGAAGT.........................	22	1	2.00	2	0	0	0	0	0	0	0	0	0	2
.................CAGGAATCAAACATATTATT.......................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	2.00	2	0	1	0	1	0	0	0	0	0	0
...............CCCAGGAATCAAACATATTATTT......................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	1	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................TCGAACTGGACGAGAACATGAAGT.........................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................CGAACTGGACGAGAACATGAAG..........................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	1
...............CCCAGGAATCAAACATATTATTAAA....................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	1	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTCGATGAGATGATCCTGGAGGCT..	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................TTCTCTTCT--ACC----C--CGACAG..................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.................CAGGAATCAAACATATTATTA......................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................ACTGGACGAGAACATGAAGT.........................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	1
......................................................................................................................................................................................................................................ATGACCTTACCCTTTGTTAAC.................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................GATCGAACTGGACGAGAAC................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAAGTTCGATGAGATGATC...........	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
................CCAGGAATCAAACATATTATC.......................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	1	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGATGAGATGATCCTGGAGGC...	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................ACATGAAGTTCGATGAGAT...............	19	1	1.00	1	0	0	0	0	1	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................ATCGAACTGGACGAGAACATGA............................	22	1	1.00	1	1	0	0	0	0	0	0	0	0	0

droPer2

ACATTCAAGAGTTCACCCAGGAATCAAACATATTATTACTGTGATACCCGGA-AATCTACTAAACCC-----CCAAACCCCC-----------A------------AGCTCCCAAGCCCCCGAGGCCTGAACTAAACCCCCAACTA--------------------------------AAA----------------------AATGGTGTTT-GA----TAT------TATGACCTTACCCTTTGTTACCCT--TC-----------------------GTCATG------------------------------A---------GAGC-ACAAA------------CAT---------TAATCTT----CCCATCGTTGGCTTCTCTTCT--ACC----C--CGGCAGATCGAACTGGACGAGAACATGAAGTTCGATGAGATGATCCTGGAGGCTGC	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
...............CCCAGGAATCAAACATATTATT.......................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	83.00	83	6	8	22	10	34	3
...............CCCAGGAATCAAACATATTATTA......................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	66.00	66	6	7	32	5	11	5
...............CCCAGGAATCAAACATATTAT........................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	33.00	33	1	0	0	7	24	1
...............CCCAGGAATCAAACATATTA.........................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	8.00	8	0	0	1	1	4	2
........................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGATGATCCTGGAGGCTGC	20	1	4.00	4	4	0	0	0	0	0
...............CCCAGGAATCAAACATATTATTAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	3.00	3	0	0	0	0	3	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGATCCTGGAGGCTGC	18	1	2.00	2	2	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................CCATCGTTGGCTTCTCTTCT--ACC----C--CGGCA...................................................	29	1	2.00	2	2	0	0	0	0	0
................CCAGGAATCAAACATATTATT.......................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	2.00	2	0	2	0	0	0	0
...............CCCAGGAATCAAACATATT..........................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	2.00	2	0	0	0	2	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGAGATGATCCTGGAGGCT..	21	1	1.00	1	1	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGATGAGATGATCCTGGAGGCTGC	25	1	1.00	1	0	1	0	0	0	0
................CCAGGAATCAAACATATT..........................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0
...............CCCAGGAATCAAACATATTATTAT.....................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0	0	0
.................CAGGAATCAAACATATTAT........................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	1	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................GAACTGGACGAGAACATGAAGTT........................	23	1	1.00	1	0	0	0	0	0	1
....................................................................................................................................................................................................................................................................................................................................................................................................................................................CGATGAGATGATCCTGGAGG....	20	1	1.00	1	1	0	0	0	0	0

droAna3

ACATTCAAAAGTTCACCCAGGAATCAAACATATTATTACTGTGACTCTCGCC-AATCTACTAAAATA-----CA-------------------C------------AGCT----------TGAGACTAC-----------CAACTA--------------------------------AAATAATGAAAACA--------AACACTGGTGATT-GT----CCTTAATAATATG----------------CT----------------------ACTAGAT--TTAAGATTAAGATATCTTAATCTTAAGAAAAATCTTTAA-----GAAA-AAAAA------------CATCAA--ATAA-----------TTCATCTCCGCATTTCTTGTC------------ACACAGATCGAACTCGACGAGAACATGAAGTTCGACGAGATGATCCTGGAAGCCGC	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
...............CCCAGGAATCAAACATATTATT.......................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	449.00	449	13	37	16	8	15	360
...............CCCAGGAATCAAACATATTATTA......................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	430.00	430	4	28	9	4	12	373
...............CCCAGGAATCAAACATATTAT........................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	90.00	90	0	4	2	4	8	72
...............CCCAGGAATCAAACATATTA.........................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	53.00	53	0	0	1	2	1	49
...............CCCAGGAATCAAACATATT..........................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	41.00	41	0	1	0	0	1	39
................CCAGGAATCAAACATATTATT.......................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	19.00	19	0	0	0	1	1	17
...............CCCAGGAATCAAACATATTATTAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	15.00	15	0	7	0	0	0	8
................CCAGGAATCAAACATATTATTA......................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	8.00	8	1	2	0	0	1	4
...............CCCAGGAATCAAACATATTATTAAA....................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	3.00	3	0	1	0	0	0	2
................CCAGGAATCAAACATATTATTAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	2.00	2	0	2	0	0	0	0
...............CCCAGGAATCAAACATATTATA.......................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	2.00	2	0	0	1	0	1	0
...............CCCAGGAATCAAACATATTATC.......................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	2.00	2	0	2	0	0	0	0
...............CCCAGGAATCAAACATATTAA........................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	1
....................................................................................................................................................................................................................................................................................................................................................................................................................................................CGACGAGATGATCCTGGAAGC...	21	1	1.00	1	0	1	0	0	0	0
..................AGGAATCAAACATATTATTA......................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0
............TCACCCAGGAATCAAACATAT...........................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	1
...............CCCAGGAATCAAACATATTATTT......................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	1
.............................................................................................................................................................................................................................................................................................................................................................................................................................GAACTCGACGAGAACATGAAGT.........................	22	1	1.00	1	0	0	0	0	1	0
...............CCCAGGAATCAAACATATTAC........................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................AACATGAAGTTCGACGAGAT...............	20	1	1.00	1	0	0	0	0	1	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................CGACGAGATGATCCTGGAAGCCGC	24	1	1.00	1	0	1	0	0	0	0
................CCAGGAATCAAACATATTAT........................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	1	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................GAACATGAAGTTCGACGAGATG..............	22	1	1.00	1	0	1	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................ACATGAAGTTCGACGAGATGAT............	22	1	1.00	1	0	0	0	0	1	0
.................CAGGAATCAAACATATTATT.......................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0
................CCAGGAATCAAACATATTATTT......................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0

droBip1

TCATTCAAAAGTTCACCCAGGAATCAAACATATTATTACTGTGACCCTCGCC-AATCTACTAAACTT-----CA-------------------C------------AGCT----------TGCGACCTCC-----------AACTA--------------------------------AACAA--GAAAGCA--------ACCACCGGTGATT-GT----CCTT--------------------TA---ATTT-------AAGGCA---------------------------------------------TATTCTTTCCA-A--GAT-------TGTCA------------A--ATAA-----------CTAATCCCTGCTTTTCTTGTC------------ACACAGATCGAGCTCGACGAGAACATGAAATTCGACGAGATGATCCTGGAAGCAGC	Size	Hit Count	Total Norm	Total
No Reads

droKik1

ACATTCAAAAGTTCACCCAGGAATCAAACATATTATTACTGTGGCCCTCGCC-AATCTACTAAACCT-----CT-------------------C------------GGCC----------TGAAAACTCGACTA--------------------------------------------AAACC--GA----A--------ACGCCTGGTGACT-GT----TATG-----C--------------------CTTTCC--T---------------------GCTGCA------------------------------A----A------ATA-----TCTG-T-----------ACA-T-A-----------CTAATCCCTGACTTTTCTGCC---------CTGACACAGATCGAACTCGACGAGAATATGAAGTTTGACGAAATGATTCTGGAGGCCGC	Size	Hit Count	Total Norm	Total
No Reads

droFic1

ACATTCAAAAGTTCACCCAGGAATCAAACATATTATTACTGTGACCCTCGCC-AATCTACTAAAACA-----CT-------------------C------------AGCT-------ACCCGTGATCACAACTA--------------------------------------------AAAC-------------------TGCCTGGTGATT-GT----TCTA-----T--------------T------TTGTC--TG---------TTTTACAAGCT--TTTA------------------------------A----T-T--CATTA-----TCTAAT-----------G--AAAT-----------TTCATCTCTGCTTTTTCCGTC------------ACACAGATCGAACTCGATGAGAACATGAAGTTTGACGAAATGATCCTGGAGGCCGC	Size	Hit Count	Total Norm	Total
No Reads

droEle1

TCATTCAAAAGTTCACCCAGGAATCAAACATATTATTACTGTGACCCTCGCC-AATCTACTAAAACA-A---CT-------------------C------------AGCT----------CGAGACCTCGACTA--------------------------------------------AAAC-------------------CGCCTGGTGATT-GACTGTTC-A-----T--------------TG---CTTTTAC--TG---CC---------------CCGTTG------------------------------A----G-TC-CAGTT-----TCTAAT-----------G--GCAT-----------TCCGCCTTTGATTTTTCTGTC------------CCACAGATCGAGCTCGATGAGAACATGAAGTTTGACGAAATGATCCTGGAGGCCGC	Size	Hit Count	Total Norm	Total
No Reads

droRho1

TCATTCAAAAGTTCACCCAGGAATCAAACATATTATTACTGTGACCCTCGCC-AATCTACTAAAACA-----CT-------------------C------------AGCT----------TGAGACCTCGACTA--------------------------------------------AAAC-------------------CGCCTGGTGATT-GT----TAT------T--------------TG---CTTTTAA--T---------------------GTCTCA------------------------------A----G-T--CAGTT-----TCTAAT-----------A--TTAT-----------TCCACATTTGATTCCTCTGCC------------ACACAGATTGAACTCGACGAGAACATGAAGTTTGACGAAATGATCCTGGAGGCCGC	Size	Hit Count	Total Norm	Total
No Reads

droBia1

TCATTCAAAAGTTCACCCAGGAATCAAACATATTATTACTGTGACCCTCGCC-AATCTACTAAAACA-----AT-------------------C------------AGCT----------CTATATCTCGACTA--------------------------------------------AAAA-------------------CGCCTGGTGTTT-GT----TCA------T--------------TG---TT---------AACCCT---------------------------------------------TGTTTCGTCTA-T--CAATA-----TCTAAT-----------A--GAAT-----------TCCATCTCTGATTTTTCTGCC------------ACACAGATCGAACTCGACGAGAACATGAAGTTTGACGAAATGATCCTGGAGGCTGC	Size	Hit Count	Total Norm	Total
No Reads

droTak1

TCATTCAAAAGTTCACCCAGGAATCAAACATATTATTACTGTGACCCTCGCTAAATCTACTAAAACA---------------------------------------------------------------------------------------------------------------AAAA-------------------CGCCTGGTGATT-GT----TC-A-----T--------------TG---TTTTCTC--TG---------T----------CCTTTA------------------------------A----G-TCACAGTA-----ACTAAT-----------A--GT----------------ATCTCTGATTTTTCTGCC------------ACACAGATTGAACTCGACGAGAACATGAAGTTTGACGAAATGATTTTGGAGGCCGC	Size	Hit Count	Total Norm	Total
No Reads

droEug1

TCATTCAAAAGTTCACCCAGGAATCAAACATATTATTACTGTGACCCTCGCC-AATCTACTAAAAAA-----TT-------------------C------------AGC-----------------CTCAACTA--------------------------------------------AACA-------------------TGCCTGGTGATT-GT----TGTTCA---T--------------T---------------AACCCTTTGTTT--------GC-----------------------------------------T--CAGTA-----TCTAAT-----------ACAGTAC-----------TCCATCTCCGATTTTT----C------------ACACAGATTGAACTTGACGAAAACATGAAATTTGATGAAATGATTCTGGAGGCCGC	Size	Hit Count	Total Norm	Total
No Reads

dm3

TCATTCAAAAGTTCACCCAGGAATCAAACATATTATTACTGTGACCCTCGCC-AATCTACTAAAACA-----CT-------------------C------------AGCT----------CAAGAACTTAACTA--------------------------------------------AATT-------------------CCATTGGTGATC-GT----TTCA-----T--------------TC---TTTT--TC-----------------------GCCTCA------------------------------A----G-T--CACCA-----TGTAAT-----------A--ATAT-----------TTCACTTTTGATTTCTTTACC------------ACATAGATTGAACTCGACGAAAACATGAAGTTTGACGAAATGATCTTGGAGGCTGC	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
...............CCCAGGAATCAAACATATTATTA......................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	16237.00	16237	0	0	0	0	3	0	0	2	3	4	1	2	1	0	0	0	0	0	0	0	0	1	5	0	7	0	3	9	14	19	27	18	32	3	0	0	3	9	11	0	2	3	13	13	5	2	19	10	8	18	23	19	19	15	12	0	0	18	9	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	21	20	17	30	0	15	5	48	7	2	22	17	3	5	24	11	1	6	6	8	10	4	1	15	45	93	2	32	18	51	22	1	13	0	5	12	9	4	7	1	10	19	0	8	1	4	5	24	0	8	0	4	2	0	0	0	0	0	0	0	0	0	0	2	2	6	40	8	2	28	13	21	9	27	29	57	35	28	0	0	0	0	0	6	0	75	0	1	0	39	55	0	37	27	14	46	39	29	18	20	71	26	116	32	4	2	0	17	2	64	5	8	24	9	4	0	0	8	1	16	6	0	0	0	0	0	3	4	0	0	3	0	0	0	155	164	93	1	33	2	1	16	3	6	12	11	5	13	10	18	0	0	9	0	0	0	0	18	15	0	46	49	42	330	76	46	22	45	49	17	21	32	29	129	70	22	33	16	57	113	105	105	75	17	26	89	337	139	72	19	31	57	299	8	35	78	425	44	187	31	44	30	34	315	64	87	70	84	87	88	11	9	100	5	53	140	18	38	16	92	15	16	120	152	16	63	132	1700	337	25	80	66	677	1318	163	40	671	28	24	281	39	19	111	61	54	85	271	212	1473	371	0
...............CCCAGGAATCAAACATATTATT.......................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	15141.00	15141	0	0	0	0	2	0	0	0	1	1	0	1	0	2	0	0	0	0	0	0	0	0	3	2	3	0	0	9	6	29	24	49	88	3	3	0	4	15	13	6	3	2	7	11	6	4	14	11	17	8	11	14	13	12	57	24	0	5	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	166	186	136	193	7	10	0	5	4	3	31	24	3	2	7	25	1	1	18	7	9	2	0	6	22	53	1	38	41	50	48	6	13	2	4	0	6	6	4	0	11	22	1	8	0	4	7	17	0	8	1	10	5	0	0	0	0	0	0	0	0	0	0	3	4	17	9	3	2	13	4	6	10	16	19	20	13	12	0	0	0	0	0	4	8	113	0	19	0	53	79	0	46	21	7	44	94	30	52	31	88	34	154	42	0	7	9	25	0	96	11	5	10	14	0	0	0	9	1	12	16	0	0	0	0	0	1	9	0	0	0	0	0	0	120	89	98	1	19	2	1	42	24	39	52	26	11	31	45	10	0	4	9	0	0	0	0	5	9	0	38	83	86	396	84	30	39	120	117	37	27	33	25	113	49	78	13	15	50	36	125	70	48	6	38	133	311	46	76	39	29	46	258	11	63	52	340	20	120	24	37	25	26	259	87	69	91	112	12	29	7	2	120	9	25	100	10	32	13	78	27	22	152	204	43	57	75	877	377	22	69	69	487	929	75	23	388	26	44	484	69	32	158	124	73	187	261	340	843	485	0
...............CCCAGGAATCAAACATATTAT........................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	3581.00	3581	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	11	0	0	0	0	0	0	0	0	1	1	2	0	0	1	2	0	1	1	0	0	3	1	2	0	1	2	34	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	70	71	35	75	3	0	1	2	0	1	5	7	2	2	1	6	0	2	16	2	4	0	0	5	2	33	1	8	15	20	11	0	9	1	5	1	0	2	0	0	7	2	0	0	0	1	0	1	0	8	0	3	9	0	0	0	0	0	0	0	0	0	0	1	0	12	0	2	0	0	3	2	2	9	0	3	3	2	0	0	0	0	0	1	0	55	2	13	0	20	49	0	15	2	1	13	23	6	16	0	29	7	78	8	0	5	0	6	0	22	6	5	2	1	1	0	0	4	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	21	6	8	2	5	0	1	1	2	1	2	2	0	1	6	4	0	0	4	0	0	0	0	1	2	0	13	46	15	73	33	8	2	20	29	1	0	3	1	12	5	11	8	2	15	7	40	21	13	7	14	85	124	32	36	14	9	28	141	5	29	23	152	8	46	14	16	10	28	104	64	63	45	92	7	2	1	0	79	1	8	18	2	6	5	11	2	2	7	49	4	2	13	142	40	3	6	19	34	115	9	4	27	3	2	73	3	3	12	6	7	10	28	51	103	78	0
...............CCCAGGAATCAAACATATTA.........................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	2459.00	2459	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	1	2	0	0	0	0	0	0	1	0	1	0	0	0	0	4	0	0	0	0	0	0	0	0	1	1	10	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	5	6	11	0	0	0	0	0	0	4	0	0	0	1	0	0	0	1	0	1	0	0	0	0	0	0	3	2	2	6	0	0	1	0	0	0	1	0	0	0	2	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	1	0	0	0	1	0	3	0	0	0	0	0	0	0	0	5	19	0	0	0	8	16	0	5	1	1	6	2	2	3	2	6	1	18	5	0	12	0	1	1	4	0	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	15	12	8	3	3	0	0	0	0	0	0	1	0	0	0	2	0	0	0	0	0	0	0	2	0	0	0	2	32	90	44	7	2	16	3	2	9	15	2	5	2	4	3	1	4	5	31	41	2	8	4	53	96	4	13	16	7	3	9	1	6	1	19	1	3	3	6	12	68	190	10	7	19	19	3	2	0	0	64	0	2	8	1	2	2	25	2	1	39	8	2	1	1	184	120	2	18	100	39	178	7	3	29	12	6	76	6	1	5	8	6	25	117	35	84	85	0
...............CCCAGGAATCAAACATATTATTAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	553.00	553	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	2	1	0	0	0	1	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	2	3	0	4	0	0	0	1	3	2	1	3	1	0	0	0	1	0	1	0	0	1	2	4	0	7	7	11	0	0	0	0	1	2	0	0	0	0	1	0	0	0	0	1	1	1	0	0	0	3	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	3	1	7	4	0	0	0	0	0	0	0	0	0	0	0	3	5	0	1	0	0	1	2	0	0	0	7	0	3	0	0	0	0	0	0	6	1	0	3	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	1	0	0	0	0	2	0	0	0	1	0	1	2	0	0	0	4	0	0	0	0	1	1	0	1	0	0	3	2	0	0	0	0	0	0	0	0	1	1	1	0	1	3	0	0	1	2	0	2	1	10	4	1	0	3	16	46	1	5	22	85	5	40	1	3	3	0	5	5	7	3	0	9	1	0	0	2	0	1	5	2	1	1	0	0	1	2	7	0	2	3	13	3	0	0	0	5	12	2	0	6	0	1	2	1	0	2	0	1	1	4	3	22	12	0
...............CCCAGGAATCAAACATATT..........................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	409.00	409	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	2	1	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	4	4	5	0	0	0	0	0	0	0	0	1	0	1	0	0	0	3	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	3	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	6	5	0	1	0	0	3	1	3	1	2	3	1	7	0	0	0	0	0	0	4	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	1	0	1	3	3	2	1	0	0	46	4	0	0	5	0	9	2	1	2	0	1	2	0	3	1	1	1	3	5	3	1	0	0	0	2	0	0	0	1	0	1	0	5	3	4	16	13	8	10	19	0	0	0	0	4	1	0	0	0	0	0	0	1	0	11	5	0	0	0	0	1	0	0	0	0	1	0	0	6	0	2	78	1	0	1	1	1	5	9	15	3	0	0
................CCAGGAATCAAACATATTATTA......................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	294.00	294	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	1	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	5	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	2	0	2	0	0	0	1	0	1	0	4	0	9	3	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6	9	6	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	2	1	8	3	0	0	0	0	0	1	1	1	0	0	0	0	0	2	2	5	3	1	0	1	8	17	0	5	0	2	1	1	1	1	4	17	3	7	1	0	1	1	4	0	1	6	1	3	1	0	0	7	0	2	1	0	2	0	1	1	0	5	4	5	0	5	12	9	0	1	0	6	21	2	0	1	0	0	2	0	0	1	0	0	1	13	1	5	2	0
................CCAGGAATCAAACATATTATT.......................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	285.00	285	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	1	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	4	3	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	7	1	0	0	0	5	0	2	0	2	2	1	2	5	1	3	0	9	3	0	0	0	0	0	3	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	10	10	2	0	0	0	0	0	0	0	0	1	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	12	5	0	1	1	1	0	1	1	1	0	3	0	0	0	1	1	4	1	0	0	0	3	9	1	3	0	3	0	3	0	0	6	15	0	1	0	0	1	1	6	1	0	0	2	0	0	0	0	8	0	1	2	0	1	0	1	1	0	4	1	4	0	2	7	17	0	1	1	8	15	0	1	4	0	0	5	1	0	2	0	1	2	4	2	5	1	0
...............CCCAGGAATCAAACATATTATTAAA....................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	203.00	203	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	1	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	1	0	1	1	0	1	0	3	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	1	1	0	3	2	3	0	1	0	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	1	0	0	0	1	0	0	1	1	0	1	0	0	0	0	1	1	0	0	1	0	5	30	1	5	12	50	1	9	0	0	1	0	1	2	0	0	0	2	0	0	0	0	0	2	3	0	6	0	0	0	0	0	0	0	0	9	2	0	0	0	0	0	4	0	0	2	0	0	1	0	0	1	0	0	0	1	1	2	2	0
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....................GAATCAAACATATTATTA......................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
...............CCCAGGAATCAAACATATTG.........................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0
..............ACCCAGGAATCAAACATATTAT........................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............ACCCAGGAATCAAACATATTA.........................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

TCATTCAAAAGTTCACCCAGGAATCAAACATATTATTACTGTGACCCTCGCC-AATCTACTAAAACA-----CT-------------------C------------AGCT----------CAAGAACTTAACTA--------------------------------------------AATT-------------------CCATTGGTGATT-GT----TTCA-----T--------------TC---TTTT--TC-----------------------GCCTCA------------------------------A----G-T--CAGCA-----TGTAAT-----------A--ATAT-----------TTCACCTTTGATTTCTCTACC------------ACATAGATTGAACTCGACGAAAACATGAAGTTTGACGAAATGATCTTGGAGGCTGC	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
...............CCCAGGAATCAAACATATTATTA......................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	615.00	615	37	11	52	0	1	4	22	25	5	5	7	416	3	27	0	0	0
...............CCCAGGAATCAAACATATTATT.......................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	434.00	434	140	11	20	1	11	19	15	21	5	2	9	161	1	18	0	0	0
...............CCCAGGAATCAAACATATTATTAAA....................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	93.00	93	0	0	2	0	0	0	18	22	37	10	1	0	1	2	0	0	0
...............CCCAGGAATCAAACATATTAT........................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	93.00	93	46	3	3	0	7	18	1	1	1	1	3	4	0	5	0	0	0
...............CCCAGGAATCAAACATATTA.........................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	69.00	69	7	1	0	0	9	36	3	0	0	0	2	11	0	0	0	0	0
...............CCCAGGAATCAAACATATTATTAC.....................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	47.00	47	1	0	0	0	12	34	0	0	0	0	0	0	0	0	0	0	0
...............CCCAGGAATCAAACATAT...........................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	38.00	38	0	0	0	0	16	22	0	0	0	0	0	0	0	0	0	0	0
...............CCCAGGAATCAAACATATTATTAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	32.00	32	3	0	3	0	0	0	8	1	8	3	2	3	0	1	0	0	0
...............CCCAGGAATCAAACATATT..........................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	23.00	23	6	0	0	0	3	11	0	0	0	0	1	2	0	0	0	0	0
................CCAGGAATCAAACATATTATTA......................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	8.00	8	0	0	1	0	0	0	2	1	1	0	0	3	0	0	0	0	0
................CCAGGAATCAAACATATTATT.......................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	7.00	7	1	0	0	0	0	0	0	0	0	0	0	6	0	0	0	0	0
...............CCCAGGAATCAAACATATTATTAAAA...................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	4.00	4	0	0	0	0	0	0	1	2	0	1	0	0	0	0	0	0	0
...............CCCAGGAATCAAACAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................	16	1	3.00	3	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0
................CCAGGAATCAAACATATTATTAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	2.00	2	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
.................CAGGAATCAAACATATTATT.......................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	2.00	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................GATTGAACTCGACGAAAACATGAAG..........................	25	1	2.00	2	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............TCACCCAGGAATCAAACATATT..........................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0
...............CCCAGGAATCAAACATA............................................................................................................................................................................................................................................................................................................................................................................................................................................	17	1	2.00	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................TGACGAAATGATCTTGGA......	18	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............CCCAGGAATCAAACATATTATC.......................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	2.00	2	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................ATTGAACTCGACGAAAACATGAAGTT........................	26	1	2.00	2	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................CATGAAGTTTGACGAAATGATCT..........	23	1	2.00	2	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0
...............CCCAGGAATCAAACATATTT.........................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	2.00	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTTGACGAAATGATCTTGGAGGCT..	25	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............CACCCAGGAATCAAACATATTA.........................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................TTGAACTCGACGAAAACATGAAGTT........................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................TGACGAAATGATCTTGGAGGCT..	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGACGAAATGATCTTGGAGGC...	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................AGGAATCAAACATATTATTA......................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................GACGAAAACATGAAGTTTGACGAAAT...............	26	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
............TCACCCAGGAATCAAACATAT...........................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGAAATGATCTTGGAGG....	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............CCCAGGAATCAAACATATTATTAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................ATTGAACTCGACGAAAAC................................	18	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................ATTGAACTCGACGAAAACA...............................	19	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
...............CCCAGGAATCAAACATATTATTG......................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................TGAACTCGACGAAAACATGAAGTT........................	24	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.................CAGGAATCAAACATATTATTA......................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................ATTGAACTCGACGAAAACATGAA...........................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............CCCAGGAATCAAACATATA..........................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................TGAAGTTTGACGAAATGATCTTGGA......	25	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAATGATCTTGGAGGCTG.	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
...........................ACATATTATTACTGTGACCCT............................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............CCCAGGAATCAAACATATTATTC......................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAAATGATCTTGGAGGCTTT	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
...............CCCAGGAATCAAACATATTATTT......................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAAGTTTGACGAAATGATCTTGGA......	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................AGATTGAACTCGACGAAAACATGAAGT.........................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................TGACGAAATGATCTTGGAGGC...	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
...............CCCAGGAATCAAACATATTATA.......................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0

droSec2

TCATTCAAAAGTTCACCCAGGAATCAAACATATTATTACTGTGACCCTCGCC-AATCTACTAAAACA-----CT-------------------C------------AGCT----------CAAGAACTTAACTA--------------------------------------------AATT-------------------CCATTGGTGATT-GT----TTCA-----T--------------TC---TTTT--TC-----------------------ACTTCA------------------------------A----G-T--CAGCA-----TGTAAT-----------A--ATAT-----------ATCACCTTTGATTTCTCTACC------------ACATAGATTGAACTGGACGAAAACATGAAGTTTGACGAAATGATCTTGGAGGCTGC	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
...............CCCAGGAATCAAACATATTATT.......................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	577.00	577	20	39	133	385
...............CCCAGGAATCAAACATATTATTA......................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	541.00	541	8	26	302	205
...............CCCAGGAATCAAACATATTAT........................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	95.00	95	5	4	7	79
...............CCCAGGAATCAAACATATT..........................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	84.00	84	0	0	5	79
...............CCCAGGAATCAAACATATTA.........................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	68.00	68	0	4	10	54
................CCAGGAATCAAACATATTATT.......................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	11.00	11	3	1	2	5
...............CCCAGGAATCAAACATATTATTAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	11.00	11	1	1	3	6
................CCAGGAATCAAACATATTATTA......................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	5.00	5	0	0	3	2
...............CCCAGGAATCAAACATATTATTAAA....................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	2.00	2	1	0	1	0
................CCAGGAATCAAACATATTA.........................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	2.00	2	0	0	0	2
................CCAGGAATCAAACATATTATA.......................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0
.................CAGGAATCAAACATATTATT.......................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................GATTGAACTGGACGAAAACATGAAGT.........................	26	1	1.00	1	0	0	1	0
................CCAGGAATCAAACATATT..........................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	1
...............CCCAGGAATCAAACATAT...........................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	1
...............CCCAGGAATCAAACATATA..........................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	1
................CCAGGAATCAAACATATTATTAAA....................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................TGAAGTTTGACGAAATGATCTTT........	23	1	1.00	1	0	1	0	0
...............CCCAGGAATCAAACATATTATTAT.....................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0

droYak3

TCATTCAAAAGTTCACCCAGGAATCAAACATATTATTACTGTGACCCTCGCC-AATCTACTAAAACA-----CT-------------------C------------AGCT----------CAAGATCTTGACTA--------------------------------------------AAAC------------------CCCATTGGTGATT-GT----TCTG-----T--------------TC---CTAT--TT-----------------------GCCTTA------------------------------A----G-T--CAGCA-----CGTAAT-----------A--ATAT-----------GTCATCTTTGCTTTCTCTGCC------------ACACAGATTGAACTCGACGAAAACATGAAGTTTGACGAAATGATCTTGGAGGCCGC	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
...............CCCAGGAATCAAACATATTATTA......................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	393.00	393	15	10	137	200	6	11	14	0	0	0	0
...............CCCAGGAATCAAACATATTATT.......................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	303.00	303	34	36	77	100	15	28	13	0	0	0	0
...............CCCAGGAATCAAACATATTAT........................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	52.00	52	11	4	5	4	2	23	3	0	0	0	0
...............CCCAGGAATCAAACATATTA.........................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	15.00	15	3	1	0	6	2	3	0	0	0	0	0
................CCAGGAATCAAACATATTATT.......................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	9.00	9	1	3	3	2	0	0	0	0	0	0	0
...............CCCAGGAATCAAACATATT..........................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	6.00	6	1	0	2	1	0	2	0	0	0	0	0
................CCAGGAATCAAACATATTATTA......................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	6.00	6	1	1	2	2	0	0	0	0	0	0	0
...............CCCAGGAATCAAACATATTATC.......................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	4.00	4	0	0	3	1	0	0	0	0	0	0	0
...............CCCAGGAATCAAACATATTATTAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	4.00	4	0	0	1	0	1	1	1	0	0	0	0
...............CCCAGGAATCAAACATATTATTG......................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	2.00	2	0	0	0	2	0	0	0	0	0	0	0
...............CCCAGGAATCAAACATATTATTAT.....................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	2.00	2	0	0	1	1	0	0	0	0	0	0	0
.................CAGGAATCAAACATATTATT.......................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.................CAGGAATCAAACATATTAT........................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGAAATGATCTTGGAGGC...	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...TTCAAAAGTTCACCCAGG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................GAACTCGACGAAAACATGAAGT.........................	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................AAACATGAAGTTTGACGAAAT...............	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.............CACCCAGGAATCAAACATATTAT........................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
...............CCCAGGAATCAAACATAT...........................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0
...................GGAATCAAACATATTATT.......................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGACGAAATGATCTTGGAGGCC..	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.................CAGGAATCAAACATATTATTA......................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
...............CCCAGGAATCAAACATATTATTT......................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................TGACGAAATGATCTTGGA......	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..............ACCCAGGAATCAAACATATTAT........................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
................CCAGGAATCAAACATATTAT........................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0

droEre2

TCATTCAAAAGTTCACCCAGGAATCAAACATATTATTACTGTAGCCTTCGCC-AATCTACTAAAACA-----CT-------------------C------------AGCT----------CGAGATCTTAACTA--------------------------------------------AACC-------------------CCATTGGTGATT-GT----TCTA-----T--------------TC---GTAT--TCAT---------------------ACATTC------------------------------A----G-T--AAGCA-----TGTAAT-----------A--ATAT-----------TTCATCTTTGATTTCTCTGCC------------ACACAGATTGAACTCGACGAAAACATGAAGTTCGACGAAATGATCTTGGAGGCCGC	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
...............CCCAGGAATCAAACATATTATT.......................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1139.00	1139	31	26	3	45	85	949	0
...............CCCAGGAATCAAACATATTATTA......................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	973.00	973	15	17	1	94	94	752	0
...............CCCAGGAATCAAACATATTAT........................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	193.00	193	6	1	0	1	19	166	0
...............CCCAGGAATCAAACATATTA.........................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	98.00	98	1	0	0	2	6	89	0
...............CCCAGGAATCAAACATATT..........................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	68.00	68	0	0	2	1	2	63	0
...............CCCAGGAATCAAACATATTATTAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	29.00	29	1	1	0	0	1	26	0
................CCAGGAATCAAACATATTATT.......................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	22.00	22	4	0	0	1	0	17	0
...............CCCAGGAATCAAACATATTATTC......................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	12.00	12	0	0	0	0	0	12	0
................CCAGGAATCAAACATATTATTA......................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	12.00	12	1	0	0	0	0	11	0
...............CCCAGGAATCAAACATATTATTT......................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	10.00	10	1	0	0	0	0	9	0
...............CCCAGGAATCAAACATATTATTAAA....................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	8.00	8	0	0	0	0	0	8	0
.................CAGGAATCAAACATATTATT.......................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	5.00	5	1	0	0	0	0	4	0
...............CCCAGGAATCAAACATATTATTAT.....................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	3.00	3	0	0	0	0	0	3	0
.................CAGGAATCAAACATATTATTA......................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	3.00	3	0	0	0	0	0	3	0
...............CCCAGGAATCAAACATATTATTG......................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	3.00	3	0	0	0	0	0	3	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................ATTGAACTCGACGAAAACATGAAGTT........................	26	1	2.00	2	1	1	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................GACGAAATGATCTTGGAGGC...	20	1	2.00	2	1	0	0	0	1	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................CGACGAAATGATCTTGGAGGC...	21	1	1.00	1	0	0	0	0	0	1	0
................CCAGGAATCAAACATATT..........................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	1	0
................................................................................................................................................................................................................................................................................................................................................................................................................................CTCGACGAAAACATGAAGTTCG......................	22	1	1.00	1	0	0	0	0	0	1	0
...............CCCAGGAATCAAACATATTATTAAAA...................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	1	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................AAACATGAAGTTCGACGAAATGAT............	24	1	1.00	1	1	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................ACTCGACGAAAACATGAAGTT........................	21	1	1.00	1	0	1	0	0	0	0	0
................CCAGGAATCAAACATATTAT........................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	1	0
...............CCCAGGAATCAAACATATTATTCA.....................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	1	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................GAACTCGACGAAAACATGAAGTT........................	23	1	1.00	1	1	0	0	0	0	0	0
................CCAGGAATCAAACATATTATTT......................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0	0
...............CCCAGGAATCAAACATAT...........................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	1	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................CGACGAAATGATCTTGGA......	18	1	1.00	1	1	0	0	0	0	0	0
...............CCCAGGAATCAAACATATTATC.......................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	1	0
..............ACCCAGGAATCAAACATATTATT.......................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	1	0

dgr_230

scaffold_15072:36405-36555 +

Known Ortholog

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads