dgr_22

ACACAAAACAACAAAATCAAAGTACAACGGAAGTTTCGCCCAATCCCGTTACGATTTTGCGAAAGTCTCATTGTATGACCATTTGATAACCAATGAGACGTTCACATCTTCGAACCGGGCGTAACGGTAACGACAACCAAAGGTGAAAAGCTATCCACCAAGTTGC *********************************.(((((......(((.(((...((.(((.((((((((((((.........)))..))))))))).))).))...)))))).))))).........**********************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V109 male body	M041 female body
.............................................................................................TGAGACGTTCACATCTTCGAAC...................................................	22	0	1	7.00	7	6	1
.............................................................................................TGAGACGTTCACATCTTCGA.....................................................	20	0	1	3.00	3	3	0
..................................................ACGATTTTGCGAAAGTCTCATT..............................................................................................	22	0	1	2.00	2	1	1
.............................................................................................TGAGACGTTCACATCTTCGAA....................................................	21	0	1	2.00	2	2	0
..................................................ACGATTTTGCGAAAGTCTCAT...............................................................................................	21	0	1	2.00	2	2	0
.............................................................................................TGAGACGTTCACATCTTCGAACC..................................................	23	0	1	1.00	1	1	0
.............................................................................................TGAGACGTTCACATCTTGGAAC...................................................	22	1	1	1.00	1	1	0
.................................................TACGATTTTGCGAAAGTCTCAT...............................................................................................	22	0	1	1.00	1	0	1
.............................................................................................TGAGACGTTCACATCTTCGAACT..................................................	23	1	1	1.00	1	1	0
..................................................ACGATTTTGCGAAAGTCTCA................................................................................................	20	0	1	1.00	1	1	0
...................................TCGCCCAATCCCGGGGCG.................................................................................................................	18	3	20	0.05	1	0	1

Species	Coordinate	ID	Alignment
droGri2	scaffold_15081:2044442-2044607 -	dgr_22	ACACAAAACAACAAAATCAAAGTACAACGGAAGTTTCGCCCAATCCCGTTACGATTTTGCGAAAGTCTCATTGTATGACCATTTGATAACCAATGAGACGTTCACATCTTCGAACCGGGCGTAACGGTAACGACAACCAAAGGTGAAAAGCTATCCACCAAGTTGC
droVir3	scaffold_13042:906568-906664 -	dvi-mir-977	-------------------------------------GCCCAGCCCAGTTGCGATTGCGCGGACATCTCATCGTATAAACATTCGATAACCAACGAGATATTCACGTTATCGAGACTGAGACGTCGGCAAAGAC--------------------------------
droMoj3	scaffold_6328:2900842-2900975 -	dmo_55	ACATGAGTTAAACGAAATGAACCAGTTCGTTGTTCTGGCCCAGCCCGGTTCCGATTGCGCGGACATCTCATCGTCTGACCATTCGATAACCGATGAGATATTCACGTTATCGAGACTGCGACAGCGGCACTGAC--------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droGri2

ACACAAAACAACAAAATCAAAGTACAACGGAAGTTTCGCCCAATCCCGTTACGATTTTGCGAAAGTCTCATTGTATGACCATTTGATAACCAATGAGACGTTCACATCTTCGAACCGGGCGTAACGGTAACGACAACCAAAGGTGAAAAGCTATCCACCAAGTTGC	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
.............................................................................................TGAGACGTTCACATCTTCGAAC...................................................	22	1	7.00	7	1	6
.............................................................................................TGAGACGTTCACATCTTCGA.....................................................	20	1	3.00	3	0	3
..................................................ACGATTTTGCGAAAGTCTCATT..............................................................................................	22	1	2.00	2	1	1
.............................................................................................TGAGACGTTCACATCTTCGAA....................................................	21	1	2.00	2	0	2
..................................................ACGATTTTGCGAAAGTCTCAT...............................................................................................	21	1	2.00	2	0	2
.............................................................................................TGAGACGTTCACATCTTCGAACC..................................................	23	1	1.00	1	0	1
.................................................TACGATTTTGCGAAAGTCTCAT...............................................................................................	22	1	1.00	1	1	0
.............................................................................................TGAGACGTTCACATCTTCGAACT..................................................	23	1	1.00	1	0	1
..................................................ACGATTTTGCGAAAGTCTCA................................................................................................	20	1	1.00	1	0	1

droVir3

-------------------------------------GCCCAGCCCAGTTGCGATTGCGCGGACATCTCATCGTATAAACATTCGATAACCAACGAGATATTCACGTTATCGAGACTGAGACGTCGGCAAAGAC--------------------------------	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
.............................................................................................CGAGATATTCACGTTATCGAGA...................................................	22	1	17295.00	17295	15	0	29	0	2	464	7	86	0	198	1	0	0	0	3	0	1	1	7	0	451	1	0	0	1	2	9	7	5559	3811	1447	4311	2	271	0	2	0	2	4	541	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	3	0	1	0	55	0
.............................................................................................CGAGATATTCACGTTATCGAG....................................................	21	1	15060.00	15060	1	0	19	0	8	646	3	65	0	64	0	0	0	0	3	0	0	0	4	0	621	1	0	1	6	3	4	4	3767	3152	1149	3995	3	481	0	0	1	1	0	1031	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	1	23	0
..................................................GCGATTGCGCGGACATCTCATC..............................................................................................	22	1	954.00	954	4	0	7	0	0	22	1	2	0	6	0	0	0	0	0	0	0	0	0	0	54	0	0	0	0	0	0	0	221	208	117	234	0	43	0	0	0	0	0	25	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	10	0
.............................................................................................CGAGATATTCACGTTATCGAGT...................................................	22	1	582.00	582	0	0	0	0	0	42	0	12	0	9	0	0	0	0	0	0	0	0	0	0	52	0	0	0	0	0	0	0	107	95	41	137	0	30	0	0	0	0	0	53	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0
..................................................GCGATTGCGCGGACATCTCAT...............................................................................................	21	1	580.00	580	0	0	0	0	0	6	1	1	0	0	0	0	0	0	0	0	0	0	0	0	27	0	0	0	0	0	0	0	140	130	57	179	0	21	0	0	0	0	0	17	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
.............................................................................................CGAGATATTCACGTTATCGA.....................................................	20	1	542.00	542	1	0	1	0	0	23	1	3	0	5	0	0	0	0	0	0	0	0	0	0	12	0	0	0	0	0	0	0	127	125	53	126	0	21	1	0	0	0	0	43	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................CGAGATATTCACGTTATCG......................................................	19	1	453.00	453	0	0	2	0	0	41	0	3	0	8	0	0	0	0	0	0	0	0	0	0	38	0	0	0	0	0	1	0	70	76	24	80	0	50	0	0	0	0	0	59	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
..............................................................................................GAGATATTCACGTTATCGAGA...................................................	21	1	140.00	140	0	0	2	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0	0	37	35	19	34	0	3	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................GCGATTGCGCGGACATCTCA................................................................................................	20	1	123.00	123	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	7	0	0	0	0	0	0	0	33	30	8	31	0	7	0	0	0	0	0	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................CGAGATATTCACGTTATCGAGAT..................................................	23	1	115.00	115	0	0	0	0	0	3	0	1	0	0	0	0	0	0	0	0	0	0	0	0	6	0	0	0	0	0	0	0	33	20	7	38	0	1	0	0	0	0	0	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................GAGATATTCACGTTATCGAG....................................................	20	1	111.00	111	0	0	0	0	0	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0	0	29	25	12	22	0	6	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
..................................................GCGATTGCGCGGACATCTCATCG.............................................................................................	23	1	100.00	100	1	0	0	0	0	4	0	1	0	7	0	0	0	0	0	0	0	0	0	0	11	0	0	0	0	0	0	0	18	19	6	22	0	5	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0
.............................................................................................CGAGATATTCACGTTATCGAGAA..................................................	23	1	94.00	94	1	0	1	0	0	5	0	1	0	3	0	0	0	0	0	1	0	0	1	0	2	0	0	0	0	0	0	0	24	16	9	25	0	1	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................CGAGATATTCACGTTATCGAGC...................................................	22	1	57.00	57	0	0	0	0	0	9	0	0	0	1	0	0	0	0	0	0	0	0	0	0	14	0	0	0	0	0	0	0	8	4	3	4	0	4	0	0	0	0	0	10	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................CGAGATATTCACGTTATCGAC....................................................	21	1	34.00	34	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	8	0	0	0	0	0	0	0	7	4	4	6	0	3	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................GCGATTGCGCGGACATCTCATCGTA...........................................................................................	25	1	32.00	32	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	8	8	3	6	0	4	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
.............................................................................................CGAGATATTCACGTTATCGAGATC.................................................	24	1	27.00	27	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	5	3	3	12	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................CGAGATATTCACGTTATC.......................................................	18	1	25.00	25	0	0	0	0	0	4	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6	1	0	6	0	0	0	0	0	0	0	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................ACGAGATATTCACGTTATCGAGA...................................................	23	1	18.00	18	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	2	2	6	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................ATATTCACGTTATCGAGACTGA...............................................	22	1	17.00	17	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	3	3	0	3	0	1	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
............................................................................................ACGAGATATTCACGTTATCGAG....................................................	22	1	17.00	17	0	0	0	0	0	2	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	2	4	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................GCGATTGCGCGGACATCTCATT..............................................................................................	22	1	16.00	16	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	6	3	3	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................CGAGATATTCACGTTATCGAT....................................................	21	1	16.00	16	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6	0	0	0	0	0	0	0	1	2	0	3	0	3	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................GCGATTGCGCGGACATCTCATCT.............................................................................................	23	1	13.00	13	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	5	3	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................CGAGATATTCACGTTATCGAGAC..................................................	23	1	12.00	12	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	1	3	1	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................CGAGATATTCACGTTATCGAGAAA.................................................	24	1	12.00	12	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	3	0	3	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................CGAGATATTCACGTTATCGAA....................................................	21	1	11.00	11	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	2	3	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................CGAGATATTCACGTTATCGAGTTC.................................................	24	1	10.00	10	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	4	1	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................CGAGATATTCACGTTATCC......................................................	19	1	9.00	9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	1	1	2	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................CGAGATATTCACGTTATCGAGG...................................................	22	1	8.00	8	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	2	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................CGAGATATTCACGTTATCGTC....................................................	21	1	8.00	8	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	2	0	1	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................GATATTCACGTTATCGAGA...................................................	19	1	6.00	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	2	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................CGAGATATTCACGTTATCGAGAG..................................................	23	1	6.00	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
.............................................................................................CGAGATATTCACGTTATCGAGTT..................................................	23	1	5.00	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................AGATATTCACGTTATCGAGA...................................................	20	1	4.00	4	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................GCGATTGCGCGGACATCTC.................................................................................................	19	1	4.00	4	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................ATATTCACGTTATCGAGA...................................................	18	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................CGAGATATTCACGTTATCGC.....................................................	20	1	3.00	3	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................ACGAGATATTCACGTTATCG......................................................	20	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................GCGATTGCGCGGACATCTCATCC.............................................................................................	23	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................GCGATTGCGCGGACATCTCATCGTC...........................................................................................	25	1	3.00	3	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................GATTGCGCGGACATCTCATC..............................................................................................	20	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................CGAGATATTCACGTTATCGAGATCT................................................	25	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................GATTGCGCGGACATCTCAT...............................................................................................	19	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................GCGATTGCGCGGACATCTTC................................................................................................	20	1	3.00	3	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................ACGAGATATTCACGTTATCGA.....................................................	21	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................GCGATTGCGCGGACATCTCC................................................................................................	20	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................GAGATATTCACGTTATCGAGT...................................................	21	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................GCGATTGCGCGGACATCTCATTT.............................................................................................	23	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................CGAGATATTCACGTTATCGAGACC.................................................	24	1	2.00	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................CGAGATATTCACGTTATCGACC...................................................	22	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................GCGATTGCGCGGACATCTCATCGT............................................................................................	24	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................GCGATTGCGCGGACATCTCATCA.............................................................................................	23	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................GAGATATTCACGTTATCGA.....................................................	19	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................CGAGATATTCACGTTATCGAGAAG.................................................	24	1	2.00	2	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................GCGATTGCGCGGACATCTCATA..............................................................................................	22	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................CGATTGCGCGGACATCTCAT...............................................................................................	20	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................GAGATATTCACGTTATCGAGATC.................................................	23	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................TGCGATTGCGCGGACATCTCA................................................................................................	21	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................CGAGATATTCACGTTATCGCT....................................................	21	2	2.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................GATATTCACGTTATCGAG....................................................	18	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................GAGATATTCACGTTATCGAT....................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................CGAGATATTCACGTTATCAG.....................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................CGAGATATTCACGTTATCGATC...................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................GCGATTGCGCGGACATCTT.................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................GCGATTGCGCGGACATCTCAA...............................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................CGAGATATTCACGTTATCGATG...................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................TTGCGATTGCGCGGACATCTC.................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................CGAGATATTCACGTTATCCC.....................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................GAGATATTCACGTTATCGAGAT..................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................GAGATATTCACGTTATCG......................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................TTGCGATTGCGCGGACATCTCA................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................GATATTCACGTTATCGAGACGA................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................TGCGATTGCGCGGACATCTCATC..............................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................AGATATTCACGTTATCGAG....................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................TGCGATTGCGCGGACATCTCAT...............................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

ACATGAGTTAAACGAAATGAACCAGTTCGTTGTTCTGGCCCAGCCCGGTTCCGATTGCGCGGACATCTCATCGTCTGACCATTCGATAACCGATGAGATATTCACGTTATCGAGACTGCGACAGCGGCACTGAC--------------------------------	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
.............................................................................................TGAGATATTCACGTTATCGAGA...................................................	22	1	473.00	473	61	1	7	16	6	382
..................................................CCGATTGCGCGGACATCTCATC..............................................................................................	22	1	99.00	99	14	0	2	0	2	81
..................................................CCGATTGCGCGGACATCTCAT...............................................................................................	21	1	46.00	46	7	0	0	2	1	36
..................................................CCGATTGCGCGGACATCTCA................................................................................................	20	1	34.00	34	4	0	2	0	0	28
.............................................................................................TGAGATATTCACGTTATCGAG....................................................	21	1	22.00	22	7	0	0	0	4	11
.............................................................................................TGAGATATTCACGTTATCGAGAA..................................................	23	1	6.00	6	1	0	0	1	0	4
..................................................CCGATTGCGCGGACATCTCATCG.............................................................................................	23	1	6.00	6	1	0	0	0	0	5
.............................................................................................TGAGATATTCACGTTATCGAGT...................................................	22	1	6.00	6	1	0	0	0	0	5
..............................................................................................GAGATATTCACGTTATCGAGA...................................................	21	1	4.00	4	4	0	0	0	0	0
..................................................CCGATTGCGCGGACATCTCATT..............................................................................................	22	1	4.00	4	0	0	0	0	0	4
.............................................................................................TGAGATATTCACGTTATCGAGAT..................................................	23	1	3.00	3	1	0	0	0	0	2
.............................................................................................TGAGATATTCACGTTATCGA.....................................................	20	1	3.00	3	0	0	0	0	0	3
............................................................................................ATGAGATATTCACGTTATCGAGA...................................................	23	1	2.00	2	1	0	0	0	0	1
..................................................CCGATTGCGCGGACATCTTC................................................................................................	20	1	1.00	1	0	0	0	0	0	1
............................................................................................ATGAGATATTCACGTTATCGAGAT..................................................	24	1	1.00	1	1	0	0	0	0	0
.............................................................................................TGAGATATTCACGTTATCGAGG...................................................	22	1	1.00	1	0	0	0	0	0	1
..................................................CCGATTGCGCGGACATCTCATCC.............................................................................................	23	1	1.00	1	0	0	0	0	0	1
...............................................................................................AGATATTCACGTTATCGAGA...................................................	20	1	1.00	1	1	0	0	0	0	0
..................................................CCGATTGCGCGGACATCTCAG...............................................................................................	21	1	1.00	1	0	0	0	0	0	1
..................................................CCGATTGCGCGGACATCTCATG..............................................................................................	22	1	1.00	1	0	0	0	0	0	1
.............................................................................................TGAGATATTCACGTTATCGAGC...................................................	22	1	1.00	1	0	0	0	0	1	0
............................................................................................ATGAGATATTCACGTTATCGAGT...................................................	23	1	1.00	1	0	0	0	0	0	1
..................................................CCGATTGCGCGGACATCTCATCT.............................................................................................	23	1	1.00	1	0	0	0	0	0	1

dgr_22

scaffold_15081:2044492-2044557 -

Known Ortholog

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-26.6	-26.3	-26.0