dgr_218

CDS [Dgri\GH19496-cds]; CDS [Dgri\GH19496-cds]; exon [dgri_GLEANR_3781:3]; exon [dgri_GLEANR_3781:4]; intron [Dgri\GH19496-in]

Name	Class	Family	Strand
TART_DV	LINE	Jockey	+
(CAG)n	Simple_repeat	Simple_repeat	+

##################################################---------------------------------------------------------------------------------------------------################################################## TACTCCAGTGGCAGCATTACACACGCAAGCGCATCAAACTGATCAATTCGGTGCAGGAGAATGCAGCTGCAGCTGCAGCAGCCGCAGCAGCAACGACACAACAACAACAGCAGCAGCAGCAGCAACAACAACAAACGCAGCAGCAACAGCAACTTACACAACCACAGCAACAACAACAACAGCAGCAGCAGCAACAACA ************************************************................(((..(((((.((.((.((.((.((..................)).)).)).)).))................)))))..)))************************************************	Read size	Hit Count	Total Norm	Total	M041 female body
...............................................................................................................................................................................ACAACAGCAGCAGCAGCAACAACA	24	20	0.10	2	2
................................................................................................................................................................................CAACAGCAGCAGCAGCAAC....	19	20	0.10	2	2
.................................................................................................................................................................................AACAGCAGCAGCAGCAACAAC.	21	20	0.05	1	1

Species	Coordinate	ID	Alignment
droGri2	scaffold_14906:11707593-11707791 +	dgr_218	TAC-TCCAGTGGCA-------------GCATT---ACACACG------------C----------AAG-C--GCATCAA---------------------------ACTGATCAATTCGGTGCAGGAGAA-----------------TGCAG---------C---TGCA------G---------CT---G---------CAGCAGCCGC---------------------AG---CAGCAACGACACAACAACAAC---A---G---CAGCAG------CAGC---------AGCAACAACAACAAACGCAGCA------GCAACAGCAA---CTTA------C---------ACAAC---CA---CAGCAACAACAACAACAGCAGCAGCAGCAACAACA-
droVir3	scaffold_12855:7728711-7728899 +		AAC-TTCCACAGCC-------------GCGGG---ACCCATT------------G----------ATG-C-----------------------GCATCAGCCACCGCCAC----AATTGG---GTCT---------------ACAATATCAG------------CAGCA------GCAGC---AAC------------------AGCAGC---------------------AG---CAGCAAC--------AGCAGCA------G---C---AGCA---GC------------AGCAGCAACAACAACAACAACA------ACAGCAGCAG---CAAC------A---------ACAAC---AG---CAGCAGCATCAGCAACAGATGCAGCAGCAACAACA-
droMoj3	scaffold_6308:431167-431347 -		C------AGCAGCA-------------GCAACAGCAGCAGGA---------------------------------------------------GCAGCAG----------------C------AGGAGCA---------------GCAGCAGGAGCAG---CAGCAGGA------GCAGC---AGC------------------------------------AGC---AGCAG---CAGCAGCA--------GTA---------G---C---AGCAGCAGC------------AGCAACAGCAGCAGCAGCAACAGCAGCAGCAGCAGCAA---CAGC------A---------GCAGC---AG---CAGCAGCAGCAGCAACAGCAGCAGCAGCAGCAAC--
droWil2	scf2_1100000004822:3129390-3129576 -		TGC-AACAGCAGCA-------------GCAGCAGCAACAACA---------------------------------------------------GCATCAT----------------CATCAGCAGCAACA------------ACA---ACAA---------CAACAGCAACATCTTCAGC---AAC------------------------------------AGC---AACAT---CAACAGCA--------GCA---------G---C---AGCA------GCAAC------AACATCAACATCAACAGCAGCA------GCAACAACAA---CAAC------A---------ACAGC---AG---CAGCAGCAACAACAACAACAACAACAACAACATCA-
dp5	3:11298411-11298618 +		TCC-ACCAGCAGCA-------------GCAACATCAGCTGCAGCAGCAGCAACA--------------A-CAGCAGCAA---------------------------CATC----AACTGC---AGCAGCA---------------GCATCAGCAGCAG---CAGCAGCA------ACTGC---AGC------------------------------------AGA---AGCAG---CAACAGC--------AACAAC---AG------CAGCAG------CAAC------------ATAAACATCAACAGCAACA------ACAGCAGCAG---CAAC------A---------TAAACATCAG---CAGCAACAGCAGCAGCAGCAACAACAGCAGCAGCA-
droPer2	scaffold_4:6701433-6701623 +		C------TGCAGCA-------------GCAGC---AACA-----------------------------A-CAGCAGCAA---------------------------CATC----AACTGC---AGCAGCA---------------GCATCAGCAGCAG---CAACAGCA------GCTGC---AGC------------------------------------AGA---AGCAG---CAACAGC--------AACAAC---AGCAGCAGC------------AACATAAAC---ATCAACAGCAACAACAGCAGCA------GCAACAGCAG---CAGC------A---------GCAAC---AA---CAGCAGCAGCAACAACAGCAGCAGCAACAACAGCA-
droAna3	scaffold_13337:17094509-17094692 +		TAT-TGCAACAGCA-------------GATTG-------------------------------------C--------------------ACAGCATCAGCTGCAACAGA----TACAGC---AGCA---------------ACAGATTCAG------------CAACA------GCAGC---TCC------------------------------------AGC---AACAG---CAGCAGCA--------ACT---------G---C---AACAACAGC------------AGCAACAGCAACTCCAGCAACA------GCAGCAGCAG---CAACT--AC-A---------ACAAC---AG---CAAATGCAACAGCAGCTCCAGCAACAGCAACAACA-
droBip1	scf7180000396641:582171-582371 +		CGC-ATCAGCAGCA-------------GCAAC---AGATTTT------------GCAACAGCAGATTG-C--------------------CCAGCACCAGCTGCAACAAA----TACAGC---AGCA---------------ACAAATTCAG------------CAGCA------GCAAC---TGC---------------------------------------------AACAACAGCAAC--------AGCAGCAGCT---T---C------------AACAACAGC---AGCAACAGCAACTTCAGCAGC---------AGCAACAG---CAGC------T---------TCAGC---AG---CAGCAGCAACTTCAACAACAGCAGCAGCAACTAC--
droKik1	scf7180000302696:2004099-2004300 -		TCC-AGCCGCAGCA-------------GCAGC---CTAT------------------------CCAGG-T--------------------GCAGCAGCAGCCT---ATC-------CAGGTGCAGCAGCAGCCTGT------------CCAGCCGCAGCACC---AGCG------------T---AT---C---------CAGCA------------------GCCACTCCAA---CAGCAAC--------AACAG------------C---A---------A---CTTCAGCAGCAGCAGCAGCAACTTTATAA------GCAGCAACAG---CAAC------T---------TCAAC---AG---CAGCAAATGCAGCAAGTTCAGCAGCAGCAACTTCA-
droFic1	scf7180000453833:618464-618664 -		G-----CAGCAGCAGCA----------TCAACAGCAGCAGCA---------------------GAGCA-T--------------------GCATCACCAT----------------CAGCAGCAGCAACAACATATGCA---ACAGCAGCAG---------C---AACA------------A---CA---C---------CAGCAAC---------------AGC---AACAA---CATCAGCA--------ACA---------G---C---AACAACATC------------AACAACAGCAGCAGCAGCATCA------GCAACAGCAG---CAAC------A---------TCAAC---AA---CAGCAGCAACATCAACAGCAGCAGCAGCAACAACA-
droEle1	scf7180000491356:120832-121028 -		CC--GCCGGCGGCATTCACCAGCAACAG---------------------------------------------CAGCAA---------------------------CACC----AGCAACAGCAGCA------------------ACATCAG------------CAACA------GCAGC---AACA---TCTGCAGCAGCAGC------------------AAC---ATCAG---CAACAGCA-----GCAACAC------------C---ATCA---GCAGC---------AACAACAGCAGCAACACCATCA------GCAGCAGCAG---CAAC------A---------CCATC---AG---CAGCAGCAACACCATCAGCAGCAGCAGCAGCAACAC
droRho1	scf7180000779334:988954-989129 -		C-----CGGCAGCA-------------GCAAC---ACCCACA------------G----------ATA-T--GCAGCGA---------------------------TAT-------GT------GCA---------------ACGGATACAG---------C---AGAA------------T---TA---T---------CAGCACCTACAGCAACATCAGCAGC---------------A-----------------------A---CAGCAGCA------GC---------A---ACAGCAGCAACATCAGCA------GCAACAGCAGCAGCAGC------A---------ACAGC---AG---CAGCAGCAGCAACAGCAGCAGCAACAGCAGCACAA-
droBia1	scf7180000302428:5893169-5893368 +		C------AGCAGCAGTCT-CA------GCAA---------------------------------------CAGCAGCAAATTCAAATGATTCAGCAGCAACAACAGCAGC----AGCAGC---AGCA---------------ACAACAGCAG------------CAGCA------GCAGC---AAC------------------------------------AAC---AGCAG---CAGCAGCA--------GCAGCA------A---C---AACA---GC------------AGCAACAACAGCAGCAGCAACA------ACAGCAGCAG---CAGC------A---------ACAAC---AG---CTGCAACAACAACAACAGTTGCAGCAGCAGCAACA-
droTak1	scf7180000415352:1033532-1033711 +		AAC-ACCGGCGGCG-------------GCAGA---G-------------------------------------CAGCAATTG-----------GCATTGG--------------CCTTGG---AGCA---------------ACAGAGGCAG---------C---AGCA------------A---GA---G---------CAGCAGGCGC------------------AGCAA---CAAAGGC-----------A---------GCAGCAGCAG------CAGC---------AGCAGGAGCAGCAAAGGCAGCA------GCAACAGCAG---CAAC------A---------AGAAC---AG---CAGAGACAGCAGCAACAGCAGCAGCAGCAGCAACA-
droEug1	scf7180000409524:214455-214643 +		AC--AGCAGCAGCA-------------GCAGC---AACA------------------------GAATA-T--------------------GCATCATCATCAACAGCAGC----AGCAGC---ATCA---------------ACAACAACAG------------CAGCA------GCAGC---AGC------------------ATA---------------TGC------AA---CAGCATC--------AGCAGCA------G---C---ATCA------AC---------AGCAGCAGCATCAACAGCAACA------TCAACAGCAA---CAGC------A---------TCAAC---AG---CAGCAGCAACAACATCAGCAGCAGCAGCAACATCC-
dm3	chr3L:2871334-2871545 -		TACCACCATCCGCA-------------TTCGCATTCGCATCCGCATCATCACTA--------------C-CAGCAGCAC---------------------------TAT-------CCGCAGCAGCAA---------------------CAT---------------------------C---TGCAGCAA---------CAGCAAC---------------AGC------AG---CAGCA-----------TCACG---CCCAGCAGCAACA------TCAGC---------AGCAGCAGCAGCAACAGCAGCA------GCAGCAGCAG---CAGCACTGGGACTACTATGCCAGGC---AG---CAGCAGCAACATCAACAGCAGCAGCAGCAACAGCA-
droSim2	3l:3008634-3008844 +		AC--TCGGGTGGCA-------------GCCTG---GGAGCCGCCAGTGGAAGCA---------G------CGTGGGCGA---------------CTCC----------------CTGTGG---AGTAGCAGCGA-----------GGCCCAG---CAG---TTCCAGCA------GCAGCAGCAAC---------------AGCAGGCCC------------AGC------AA---CAAGCAC-----------A---------GCAGCAGCACCA------TC---------ACCACCAGCAGCAGCAGC---A------GTTACAGCAGCAACAAC------A---------ACAGG---CG---CAGCAGCAGCAACAACAGCAGCAGCACCATCACCA-
droSec2	scaffold_0:71544-71745 -		TGA-TGCAGCAGCA-------------GCAGA---ATCT------------------------GCACA-C--------------------GCAGCACCAGCAC---AAT-------CTGCAGCAGCAACATCAGAGCCACTCA------CAGTTGCAG---C---AACA------T---------AA---C---------CAGC------------------AGCAACATCAG---CAGCAGC-----------A---------G---C---AACA------A---CAGC---AGCAACAACAGCAGCAACAACA------GCAGCAGCAA---CAGC------A---------GCAGC---AA---CAGCAGCAACAACAGCACCAACAGCAGCAGCAACA-
droYak3	3L:8358747-8358928 -		C------AGTTGCA-------------GCAAC---ACAG-----------------------------T-CAGCAGCAA---------------------------AGT-------CAGCAGCAGCAACA---------------GCAGCAGCAGCAA---CAACAGCA------ACAGC---AGC------------------------------------AGC---AGCAG---CAACAGCA--------ACA---------G---C---AGCAGCAGC------------AACAACAGCAACAGCAGCAACA------GCAGCAACAG---CAGC------A---------ACAAC---AA---CAGCAGCAACAGCAGCAGTTACAGCTGCAGCAACA-
droEre2	scaffold_4784:3586543-3586730 +		C------AGTTGCA-------------GCAAC---ACAA-----------------------------C-CAGCAGCA---------------GCATCAG----------------CAGC---AGCAGCA---------------GCAGCAT---CA---------------------------------A---------CAGCAGCAGCAGCAGCAACAGCAGC------------AACAGCA-----GCAACAGCA------GC------AG------CAGCAACAAC---AGCAACAGCAGCAGCAGCAAC---------AGCAGCAG---CATC------A---------ACAGC---AACAGCAGCAACAGCAACAGCAGCAGCAGTTGCAGCCACA-

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droGri2

TAC-TCCAGTGGCA-------------GCATT---ACACACG------------C----------AAG-C--GCATCAA---------------------------ACTGATCAATTCGGTGCAGGAGAA-----------------TGCAG---------C---TGCA------G---------CT---G---------CAGCAGCCGC---------------------AG---CAGCAACGACACAACAACAAC---A---G---CAGCAG------CAGC---------AGCAACAACAACAAACGCAGCA------GCAACAGCAA---CTTA------C---------ACAAC---CA---CAGCAACAACAACAACAGCAGCAGCAGCAACAACA-	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
..........................................................................................................................................................................................................................................................................................................................................................................................ACAACAGCAGCAGCAGCAACAACA-	24	20	0.10	2	2	0
...........................................................................................................................................................................................................................................................................................................................................................................................CAACAGCAGCAGCAGCAAC.....	19	20	0.10	2	2	0
............................................................................................................................................................................................................................................................................................................................................................................................AACAGCAGCAGCAGCAACAAC..	21	20	0.05	1	1	0

droVir3

AAC-TTCCACAGCC-------------GCGGG---ACCCATT------------G----------ATG-C-----------------------GCATCAGCCACCGCCAC----AATTGG---GTCT---------------ACAATATCAG------------CAGCA------GCAGC---AAC------------------AGCAGC---------------------AG---CAGCAAC--------AGCAGCA------G---C---AGCA---GC------------AGCAGCAACAACAACAACAACA------ACAGCAGCAG---CAAC------A---------ACAAC---AG---CAGCAGCATCAGCAACAGATGCAGCAGCAACAACA-	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
............................................................................................................................TCT---------------ACAATATCAG------------CAGCA------GC..................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
.........................................T------------G----------ATG-C-----------------------GCATCAGCCACCGCCAC----AATTT............................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................GCGGG---ACCCATT------------G----------ATG-C-----------------------GCA...................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................ATCAGCCACCGCCAC----AATTGG---GT......................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................CT---------------ACAATATCAG------------CAGCA------GC..................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................CT---------------ACAATATCAG------------CAGCA------GCAGC---............................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................CAGCAACAGATGCAGCAGCA.......	20	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................GCAGCA------G---C---AGCA---GC------------AGCAGCA.......................................................................................................	21	20	0.20	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................GCAGC---AAC------------------AGCAGC---------------------AG---CAGC...................................................................................................................................................................	20	20	0.15	3	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................C------A---------ACAAC---AG---CAGCAGCATCAGCA......................	23	8	0.13	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................A---------ACAAC---AG---CAGCAGCATCAGCA......................	22	9	0.11	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................GCA------GCAGC---AAC------------------AGCAGC---------------------AG---CA.....................................................................................................................................................................	21	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................AGCAG---CAAC------A---------ACAAC---AG---CAGCAGCA............................	25	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................AACAACAACAACA------ACAGC.............................................................................	18	20	0.10	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................AGC---AAC------------------AGCAGC---------------------AG---CAGCAAC--------AGC.....................................................................................................................................................	24	20	0.10	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................CA------ACAGCAGCAG---CAAC------A---------AC...............................................	19	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................AGCAGCAACAACAACAACA...........................................................................................	19	20	0.10	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................AAC------A---------ACAAC---AG---CAGCAGCA............................	19	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................A------ACAGCAGCAG---CAAC------A---------ACAAC---AG---CA..................................	25	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................CAACAACAACAACA------ACAGCAGC..........................................................................	22	20	0.10	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................AGC---AAC------------------AGCAGC---------------------AG---CAGCAAC--------AGCA....................................................................................................................................................	25	20	0.10	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................CAAC---AG---CAGCAGCATCAGCA......................	20	20	0.10	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................C------A---------ACAAC---AG---CAGCAGCATCAG........................	21	11	0.09	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................C------A---------ACAAC---AG---CAGCAGCATCAGC.......................	22	11	0.09	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................A---------ACAAC---AG---CAGCAGCATCAGC.......................	21	12	0.08	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................ACAAC---AG---CAGCAGCATCAG........................	19	12	0.08	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................CAAC------A---------ACAAC---AG---CAGCAGCATC..........................	22	13	0.08	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
...................................................................................................................................................ATCAG------------CAGCA------GCAGC---AAC------------------AGCAGC---------------------AG---C......................................................................................................................................................................	27	14	0.07	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................ATCAG------------CAGCA------GCAGC---AAC------------------AGCAGC---------------------A...........................................................................................................................................................................	25	17	0.06	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
...............................................................................................................................................................................................................................................................................................................................................AAC------A---------ACAAC---AG---CAGCAGCAT...........................	20	19	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................CAGCAG---CAAC------A---------ACAAC---AG---CAGCA...............................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................ACAGCAGCAG---CAAC------A---------ACAAC---AG---CAGC................................	26	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................AGCAGC---------------------AG---CAGCAAC--------AGCA....................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................AGCAGCAG---CAAC------A---------ACAAC---AG---C...................................	21	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................AGCA---GC------------AGCAGCAACAACAAC...............................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................GCAGCAACAACAACAACAA..........................................................................................	19	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................CAGCA------GCAGC---AAC------------------AGCAGC---------------------AG---CAG....................................................................................................................................................................	24	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................GCAGCAG---CAAC------A---------ACAAC---AG---CAGCAGCA............................	27	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................AGCAGCA------G---C---AGCA---GC------------AGC...........................................................................................................	18	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................ACAACAACAACAACA------ACAGCAGCAG---.....................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................AGCAGCAG---CAAC------A---------ACAAC---AG---CAGCAGCA............................	28	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................C---AAC------------------AGCAGC---------------------AG---CAGCAAC--------AGCAGC..................................................................................................................................................	25	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................GCA------G---C---AGCA---GC------------AGCAGCAACAA...................................................................................................	22	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................CAGCAG---CAAC------A---------ACAAC---AG---C...................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................CAACA------ACAGCAGCAG---CAAC------A---------ACAAC---.........................................	25	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................AACA------ACAGCAGCAG---CAAC------A---------ACA..............................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................GCAGC---AAC------------------AGCAGC---------------------AG---CAGCAAC--------AG......................................................................................................................................................	25	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................GCAG---CAAC------A---------ACAAC---AG---CAGC................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................AACAACAACAACAACA------ACAGCAGCA.........................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................AACAACAACAACA------ACAGCAGCAG---C....................................................................	24	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................CA---GC------------AGCAGCAACAACAAC...............................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................GCAGCAACAACAACAACAACA------..................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................G------------CAGCA------GCAGC---AAC------------------AGCAGC---------------------AG---CAGC...................................................................................................................................................................	26	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................AC--------AGCAGCA------G---C---AGCA---GC------------AGCA..........................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................AGC---------------------AG---CAGCAAC--------AGCAGC..................................................................................................................................................	18	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................C---AAC------------------AGCAGC---------------------AG---CAGCAAC--------AGCAGCA------G---C---A..................................................................................................................................	29	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................AGCAGCAG---CAAC------A---------ACAAC---A........................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................GC---------------------AG---CAGCAAC--------AGCAGCA------G---C---...................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................A------G---C---AGCA---GC------------AGCAGCAACAACA.................................................................................................	22	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................G---C---AGCA---GC------------AGCAGCAACAACA.................................................................................................	21	20	0.05	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................G---CAGCAAC--------AGCAGCA------G---C---AGCA---GC------------AGCA..........................................................................................................	27	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................AGCAGC---------------------AG---CAGCAAC--------AGCAGCA------...........................................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................GCAGC---------------------AG---CAGCAAC--------AGCAGCA------...........................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................A---GC------------AGCAGCAACAACAACAACA...........................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................CA------ACAGCAGCAG---CAAC------A---------ACAAC---AG---C...................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................GCA---GC------------AGCAGCAACAACAACAACA...........................................................................................	24	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................C---------------------AG---CAGCAAC--------AGCAGCA------G---C---...................................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................C---AAC------------------AGCAGC---------------------AG---CAGCAAC--------........................................................................................................................................................	19	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................AGCAGCA------G---C---AGCA---GC------------AGCAGCAACAACA.................................................................................................	28	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................A------GCAGC---AAC------------------AGCAGC---------------------AG---CAGCAAC--------AGC.....................................................................................................................................................	27	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................ACAGCAGCAG---CAAC------A---------ACAA.............................................	19	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

C------AGCAGCA-------------GCAACAGCAGCAGGA---------------------------------------------------GCAGCAG----------------C------AGGAGCA---------------GCAGCAGGAGCAG---CAGCAGGA------GCAGC---AGC------------------------------------AGC---AGCAG---CAGCAGCA--------GTA---------G---C---AGCAGCAGC------------AGCAACAGCAGCAGCAGCAACAGCAGCAGCAGCAGCAA---CAGC------A---------GCAGC---AG---CAGCAGCAGCAGCAACAGCAGCAGCAGCAGCAAC--	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
..............................................................................................................................................................................................................................................................................................................................GCAGCAGCAGCAA---CAGC------A---------GCAGC---.........................................	23	20	0.10	2	2	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................AGCAACAGCAGCAGCAGCAGCAA---CAGC------...........................................................	27	20	0.05	1	1	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................GCAACAGCAGCAGCAGCAACA........................................................................................	21	20	0.05	1	1	0	0	0	0	0
........................................................................................................................................................................................GC------------------------------------AGC---AGCAG---CAGCAGCA--------GTA---------G---C---AGCAGC.............................................................................................................................	29	20	0.05	1	0	0	0	0	1	0

droWil2

TGC-AACAGCAGCA-------------GCAGCAGCAACAACA---------------------------------------------------GCATCAT----------------CATCAGCAGCAACA------------ACA---ACAA---------CAACAGCAACATCTTCAGC---AAC------------------------------------AGC---AACAT---CAACAGCA--------GCA---------G---C---AGCA------GCAAC------AACATCAACATCAACAGCAGCA------GCAACAACAA---CAAC------A---------ACAGC---AG---CAGCAGCAACAACAACAACAACAACAACAACATCA-	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
.......................................ACA---------------------------------------------------GCATCAT----------------CATCAGCAG......................................................................................................................................................................................................................................................................................	19	3	0.33	1	0	0	0	1	0
............................................................................................................................................................................................................................................................................................AAC------AACATCAACATCAACAGCAG..........................................................................................	23	3	0.33	1	0	0	0	1	0
................................................................................................................................................A---ACAA---------CAACAGCAACATCTTC..................................................................................................................................................................................................................................	21	4	0.25	1	0	0	0	0	1
.........................................................................................................................GCAGCAACA------------ACA---ACAA---------CAACAGC...........................................................................................................................................................................................................................................	23	20	0.15	3	0	2	0	1	0
........................................................................................................................AGCAGCAACA------------ACA---ACAA---------CA................................................................................................................................................................................................................................................	19	20	0.10	2	0	0	0	2	0
........................................................................................................................................................................................AC------------------------------------AGC---AACAT---CAACAGCA--------GCA---------...........................................................................................................................................	21	10	0.10	1	0	0	1	0	0
..............................................................................................................................................................................................................................................................................................................ATCAACAGCAGCA------GCAACA............................................................................	19	20	0.10	2	0	0	0	2	0
...............................................................................................................................................................................................................................GC---AACAT---CAACAGCA--------GCA---------G---C---AGCA------.........................................................................................................................	24	11	0.09	1	0	0	0	1	0
..........................................................................................................................................................................................................................................................................................................CAACATCAACAGCAGCA------GCAACA............................................................................	23	12	0.08	1	0	0	0	1	0
..........................................................................................................................................................................................................................................................................................................CAACATCAACAGCAGCA------GCAAC.............................................................................	22	12	0.08	1	0	0	0	1	0
.............................................................................................................................................................................................................................................................................................AC------AACATCAACATCAACA..............................................................................................	18	13	0.08	1	0	0	0	1	0
.......................................................................................................................................................................................................................................................................................................................................ACAA---CAAC------A---------ACAGC---AG---CAGCA...............................	21	20	0.05	1	0	1	0	0	0
........................................................................................................................................................................................................................................T---CAACAGCA--------GCA---------G---C---AGCA------GCAAC------A.............................................................................................................	24	20	0.05	1	0	1	0	0	0
.........................................................................................................................................................................................C------------------------------------AGC---AACAT---CAACAGCA--------GC.....................................................................................................................................................	19	20	0.05	1	0	0	0	1	0
....................................................................................................................................................................................................................................................................................................................................ACAACAA---CAAC------A---------ACAGC---AG---CAGC................................	23	20	0.05	1	0	1	0	0	0
...................................................................................................................................................................................................................................................A--------GCA---------G---C---AGCA------GCAAC------AACATC........................................................................................................	21	20	0.05	1	0	0	0	1	0
........................................................................................................................................................................................................................................T---CAACAGCA--------GCA---------G---C---AGCA------G........................................................................................................................	19	20	0.05	1	0	0	0	1	0
................................................................................................................................CA------------ACA---ACAA---------CAACAGCAACAT......................................................................................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0
........GCAGCA-------------GCAGCAGCAACAA...........................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	1	0	0	0
................................................................................................................................................................................................................................................................................................................................................AC------A---------ACAGC---AG---CAGCAGCAAC..........................	20	20	0.05	1	0	0	0	0	1
.................................................................................................................................................................................................................................................GCA--------GCA---------G---C---AGCA------GCAAC------AA............................................................................................................	19	20	0.05	1	0	1	0	0	0

dp5

TCC-ACCAGCAGCA-------------GCAACATCAGCTGCAGCAGCAGCAACA--------------A-CAGCAGCAA---------------------------CATC----AACTGC---AGCAGCA---------------GCATCAGCAGCAG---CAGCAGCA------ACTGC---AGC------------------------------------AGA---AGCAG---CAACAGC--------AACAAC---AG------CAGCAG------CAAC------------ATAAACATCAACAGCAACA------ACAGCAGCAG---CAAC------A---------TAAACATCAG---CAGCAACAGCAGCAGCAGCAACAACAGCAGCAGCA-	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
.................................TCAGCTGCAGCAGCAGCAACA--------------A-CAGCAGC......................................................................................................................................................................................................................................................................................................................................	29	1	1.00	1	0	0	1	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................G---CAGCAACAGCAGCAGCAGC.................	20	20	0.50	10	0	10	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................ATCAACAGCAACA------ACAGCAGCAG---.....................................................................	23	4	0.25	1	0	1	0	0	0	0	0	0	0	0
................................................................................................................................CA---------------GCATCAGCAGCAG---CAGC..............................................................................................................................................................................................................................................	19	20	0.15	3	0	2	0	0	1	0	0	0	0	0
................................................................................................................................CA---------------GCATCAGCAGCAG---CAGCAG............................................................................................................................................................................................................................................	21	20	0.15	3	0	0	0	0	1	0	0	2	0	0
............................................AGCAGCAACA--------------A-CAGCAGCA.....................................................................................................................................................................................................................................................................................................................................	19	20	0.15	3	0	3	0	0	0	0	0	0	0	0
.......................................................................................................................C---AGCAGCA---------------GCATCAGCAGCAG---..................................................................................................................................................................................................................................................	21	20	0.10	2	0	2	0	0	0	0	0	0	0	0
.............................................GCAGCAACA--------------A-CAGCAGCAA---------------------------C........................................................................................................................................................................................................................................................................................................	20	20	0.10	2	0	2	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................AACAGCAGCAGCAGCAACAACAGCAGCA....	28	14	0.07	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................ATCAG---CAGCAACAGCAGCAGCAGC.................	24	14	0.07	1	0	0	0	0	1	0	0	0	0	0
.......................................................................................................................C---AGCAGCA---------------GCATCAGCAGCAG---CAGC..............................................................................................................................................................................................................................................	25	20	0.05	1	0	0	1	0	0	0	0	0	0	0
.................................................................................................................................................GCATCAGCAGCAG---CAGCAGC...........................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	1	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................GCAGCAGCAACAACAGCAGCA....	21	20	0.05	1	0	0	1	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAGCAACAACAGCA.......	19	20	0.05	1	0	0	0	0	1	0	0	0	0	0
...........................................................................................................................AGCAGCA---------------GCATCAGCAGCAG---CAGCAG............................................................................................................................................................................................................................................	26	20	0.05	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................AGCAACA------ACAGCAGCAG---CAA..................................................................	20	20	0.05	1	0	0	0	0	1	0	0	0	0	0
.......................................GCAGCAGCAGCAACA--------------A-CAGCAGC......................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	1	0	0	0	0	0	0	0	0
........................................CAGCAGCAGCAACA--------------A-CAGCAGC......................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	1	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAGCAGCAACAACAGCAGCA....	25	20	0.05	1	0	1	0	0	0	0	0	0	0	0
...........................................CAGCAGCAACA--------------A-CAGCAGCAA---------------------------CA.......................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................ACAGC--------AACAAC---AG------CAGCAG------CA.........................................................................................................................	21	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................CAGCAGCAGCAGCAACAACAGCAG......	24	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................C---AGCAGCA---------------GCATCAGCAGCA......................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	1	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAGCAGCAACAACAGCAG......	23	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................CAG---CAGCAACAGCAGCAGCA...................	20	20	0.05	1	0	0	0	0	1	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................CAG---CAGCAACAGCAGCAGCAGCA................	23	20	0.05	1	0	0	0	1	0	0	0	0	0	0
...............................................................................................................................GCA---------------GCATCAGCAGCAG---CAGC..............................................................................................................................................................................................................................................	20	20	0.05	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................AGCAGCAG---CAGCAGCA------ACTG................................................................................................................................................................................................................................	20	20	0.05	1	0	1	0	0	0	0	0	0	0	0
................................................................................................................................CA---------------GCATCAGCAGCAG---CAGCAGC...........................................................................................................................................................................................................................................	22	20	0.05	1	0	0	1	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................GCAG---CAACAGC--------AACAAC---AG------CAGCA..................................................................................................................................	24	20	0.05	1	0	0	0	0	1	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................CAGCAGCAGCAACAACAGCAGC.....	22	20	0.05	1	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................CAACAGC--------AACAAC---AG------CAGCA..................................................................................................................................	20	20	0.05	1	0	0	0	0	1	0	0	0	0	0
........................................................................................................................................................................................................................................G---CAACAGC--------AACAAC---AG------CAGCAG------C..........................................................................................................................	23	20	0.05	1	0	0	0	0	0	0	1	0	0	0
..............................................................................................................................AGCA---------------GCATCAGCAGCAG---CAGCAG............................................................................................................................................................................................................................................	23	20	0.05	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................CATCAG---CAGCAACAGCAGC.......................	19	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................AG---CAACAGC--------AACAAC---AG------CAGC...................................................................................................................................	21	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................CAGCAGCAGCAGCAACAACAGCAGCAGCA-	29	20	0.05	1	0	0	0	1	0	0	0	0	0	0
.............................................................................................................................CAGCA---------------GCATCAGCAGCAG---CA................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	1	0	0	0	0

droPer2

C------TGCAGCA-------------GCAGC---AACA-----------------------------A-CAGCAGCAA---------------------------CATC----AACTGC---AGCAGCA---------------GCATCAGCAGCAG---CAACAGCA------GCTGC---AGC------------------------------------AGA---AGCAG---CAACAGC--------AACAAC---AGCAGCAGC------------AACATAAAC---ATCAACAGCAACAACAGCAGCA------GCAACAGCAG---CAGC------A---------GCAAC---AA---CAGCAGCAGCAACAACAGCAGCAGCAACAACAGCA-	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
.................................................................................................................................................................................................................................................................................................................AACAGCAGCA------GCAACAGCAG---CA...................................................................	22	20	0.15	3	0	0	3	0	0	0
.................................................................................................................................................................................................................................................................................................................AACAGCAGCA------GCAACAGCA.........................................................................	19	20	0.10	2	0	0	2	0	0	0
.........................................................................................................................................................................................................................................................................................................................CA------GCAACAGCAG---CAGC------A---------GC...............................................	19	20	0.05	1	0	0	0	0	1	0
...........................................................................................................................................................................................................................................................................................................AGCAACAACAGCAGCA------GC................................................................................	18	20	0.05	1	0	1	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................GCAG---CAGC------A---------GCAAC---AA---CAGCAGCA............................	24	20	0.05	1	0	0	1	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................AACAACAGCAGCAGCAACAA......	20	20	0.05	1	0	0	1	0	0	0
.................................................................................................................................................................................................................................................GC--------AACAAC---AGCAGCAGC------------AACA......................................................................................................................	21	20	0.05	1	0	0	1	0	0	0
.........................................................................................................................................................................................................................................................................................................................CA------GCAACAGCAG---CAGC------A---------GCAAC---A........................................	23	20	0.05	1	0	1	0	0	0	0
........................................................................................................................................................................................................................................G---CAACAGC--------AACAAC---AGCAGCAGC------------..........................................................................................................................	23	20	0.05	1	0	1	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................GCAACAACAGCAGCAGCAACA.......	21	20	0.05	1	0	0	1	0	0	0
................................................................................................................................................................................................................................................................................................................CAACAGCAGCA------GCAACAGCAG---CA...................................................................	23	20	0.05	1	0	0	1	0	0	0
........GCAGCA-------------GCAGC---AACA-----------------------------A-CAGCAGCA.....................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	1	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................AAC---AA---CAGCAGCAGCAACAA.....................	20	20	0.05	1	0	0	1	0	0	0
............................................................................................................................................................................................................................................................................................................GCAACAACAGCAGCA------GCAACA............................................................................	21	20	0.05	1	0	0	1	0	0	0

droAna3

TAT-TGCAACAGCA-------------GATTG-------------------------------------C--------------------ACAGCATCAGCTGCAACAGA----TACAGC---AGCA---------------ACAGATTCAG------------CAACA------GCAGC---TCC------------------------------------AGC---AACAG---CAGCAGCA--------ACT---------G---C---AACAACAGC------------AGCAACAGCAACTCCAGCAACA------GCAGCAGCAG---CAACT--AC-A---------ACAAC---AG---CAAATGCAACAGCAGCTCCAGCAACAGCAACAACA-	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
................................................................................................................................................................................................................................................................................AACAACAGC------------AGCAACAGCAACTCCAGC............................................................................................	27	1	2.00	2	0	2	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................AGCAGCAG---CAACT--AC-A---------ACAAC---AG---C...................................	24	1	1.00	1	0	1	0	0	0	0
.....GCAACAGCA-------------GATTG-------------------------------------C--------------------ACAGC....................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
...........GCA-------------GATTG-------------------------------------C--------------------ACAGCATCAGCTG............................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0
............CA-------------GATTG-------------------------------------C--------------------ACAGCATCAGCTG............................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	1
.......................................................................................................................................................................................................................................................................................................................AACA------GCAGCAGCAG---CAACT--AC-A---------ACAAC---.........................................	27	1	1.00	1	1	0	0	0	0	0
......................................................................................................................GC---AGCA---------------ACAGATTCAG------------CAAC...........................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	1
........ACAGCA-------------GATTG-------------------------------------C--------------------ACAGCAT..................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	1
...........................................................................................CAGCATCAGCTGCAACAGA----TACAGC---AGCA---------------.....................................................................................................................................................................................................................................................................	29	1	1.00	1	0	0	0	0	0	1
.......AACAGCA-------------GATTG-------------------------------------C--------------------ACAGCATC.................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0
...................................................................................................................................................................................................................................................................................AACAGC------------AGCAACAGCAACTCCAGCAACA------..................................................................................	28	1	1.00	1	1	0	0	0	0	0
........ACAGCA-------------GATTG-------------------------------------C--------------------ACAGCATC.................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	1
...................................................................................................................................................................................................................................................................................................................................................................................TGCAACAGCAGCTCCAGCAAC...........	21	1	1.00	1	1	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................AACAGCAGCTCCAGCAACAGCAACA....	25	1	1.00	1	0	0	0	0	0	1
.................................................................................................................................................GATTCAG------------CAACA------GCAGC---TCC------------------------------------AGC---...............................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................GCAACAGCAACTCCAGCAACA------GCAGCAGC..........................................................................	29	2	0.50	1	0	1	0	0	0	0
................................................................................................................................................................................................................................................................................AACAACAGC------------AGCAACAGCAACT.................................................................................................	22	2	0.50	1	0	1	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................CAGCTCCAGCAACAGCAACA....	20	3	0.33	1	1	0	0	0	0	0
.....................................................................................................................................................................AACA------GCAGC---TCC------------------------------------AGC---AAC............................................................................................................................................................................	18	3	0.33	1	1	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................AACAGCAGCTCCAGCAAC...........	18	3	0.33	1	1	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................GCAG---CAACT--AC-A---------ACAAC---AG---CA..................................	21	3	0.33	1	1	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................CCAGCAACA------GCAGCAGCAG---CA...................................................................	21	20	0.15	3	0	0	1	0	0	2
..................................................................................................................................................................................................................................................................................................................CCAGCAACA------GCAGCAGCAG---C....................................................................	20	20	0.10	2	0	2	0	0	0	0
............................................................................................................................................................................................................................................................................C---AACAACAGC------------AGCAACAGCA....................................................................................................	20	20	0.05	1	0	1	0	0	0	0
........................................................................................................................................................................................................................................................................G---C---AACAACAGC------------AGCAACAGC.....................................................................................................	20	20	0.05	1	1	0	0	0	0	0

droBip1

CGC-ATCAGCAGCA-------------GCAAC---AGATTTT------------GCAACAGCAGATTG-C--------------------CCAGCACCAGCTGCAACAAA----TACAGC---AGCA---------------ACAAATTCAG------------CAGCA------GCAAC---TGC---------------------------------------------AACAACAGCAAC--------AGCAGCAGCT---T---C------------AACAACAGC---AGCAACAGCAACTTCAGCAGC---------AGCAACAG---CAGC------T---------TCAGC---AG---CAGCAGCAACTTCAACAACAGCAGCAGCAACTAC--	Size	Hit Count	Total Norm	Total
No Reads

droKik1

TCC-AGCCGCAGCA-------------GCAGC---CTAT------------------------CCAGG-T--------------------GCAGCAGCAGCCT---ATC-------CAGGTGCAGCAGCAGCCTGT------------CCAGCCGCAGCACC---AGCG------------T---AT---C---------CAGCA------------------GCCACTCCAA---CAGCAAC--------AACAG------------C---A---------A---CTTCAGCAGCAGCAGCAGCAACTTTATAA------GCAGCAACAG---CAAC------T---------TCAAC---AG---CAGCAAATGCAGCAAGTTCAGCAGCAGCAACTTCA-	Size	Hit Count	Total Norm	Total
No Reads

droFic1

G-----CAGCAGCAGCA----------TCAACAGCAGCAGCA---------------------GAGCA-T--------------------GCATCACCAT----------------CAGCAGCAGCAACAACATATGCA---ACAGCAGCAG---------C---AACA------------A---CA---C---------CAGCAAC---------------AGC---AACAA---CATCAGCA--------ACA---------G---C---AACAACATC------------AACAACAGCAGCAGCAGCATCA------GCAACAGCAG---CAAC------A---------TCAAC---AA---CAGCAGCAACATCAACAGCAGCAGCAGCAACAACA-	Size	Hit Count	Total Norm	Total
No Reads

droEle1

CC--GCCGGCGGCATTCACCAGCAACAG---------------------------------------------CAGCAA---------------------------CACC----AGCAACAGCAGCA------------------ACATCAG------------CAACA------GCAGC---AACA---TCTGCAGCAGCAGC------------------AAC---ATCAG---CAACAGCA-----GCAACAC------------C---ATCA---GCAGC---------AACAACAGCAGCAACACCATCA------GCAGCAGCAG---CAAC------A---------CCATC---AG---CAGCAGCAACACCATCAGCAGCAGCAGCAGCAACAC	Size	Hit Count	Total Norm	Total
No Reads

droRho1

C-----CGGCAGCA-------------GCAAC---ACCCACA------------G----------ATA-T--GCAGCGA---------------------------TAT-------GT------GCA---------------ACGGATACAG---------C---AGAA------------T---TA---T---------CAGCACCTACAGCAACATCAGCAGC---------------A-----------------------A---CAGCAGCA------GC---------A---ACAGCAGCAACATCAGCA------GCAACAGCAGCAGCAGC------A---------ACAGC---AG---CAGCAGCAGCAACAGCAGCAGCAACAGCAGCACAA-	Size	Hit Count	Total Norm	Total
No Reads

droBia1

C------AGCAGCAGTCT-CA------GCAA---------------------------------------CAGCAGCAAATTCAAATGATTCAGCAGCAACAACAGCAGC----AGCAGC---AGCA---------------ACAACAGCAG------------CAGCA------GCAGC---AAC------------------------------------AAC---AGCAG---CAGCAGCA--------GCAGCA------A---C---AACA---GC------------AGCAACAACAGCAGCAGCAACA------ACAGCAGCAG---CAGC------A---------ACAAC---AG---CTGCAACAACAACAACAGTTGCAGCAGCAGCAACA-	Size	Hit Count	Total Norm	Total
No Reads

droTak1

AAC-ACCGGCGGCG-------------GCAGA---G-------------------------------------CAGCAATTG-----------GCATTGG--------------CCTTGG---AGCA---------------ACAGAGGCAG---------C---AGCA------------A---GA---G---------CAGCAGGCGC------------------AGCAA---CAAAGGC-----------A---------GCAGCAGCAG------CAGC---------AGCAGGAGCAGCAAAGGCAGCA------GCAACAGCAG---CAAC------A---------AGAAC---AG---CAGAGACAGCAGCAACAGCAGCAGCAGCAGCAACA-	Size	Hit Count	Total Norm	Total
No Reads

droEug1

AC--AGCAGCAGCA-------------GCAGC---AACA------------------------GAATA-T--------------------GCATCATCATCAACAGCAGC----AGCAGC---ATCA---------------ACAACAACAG------------CAGCA------GCAGC---AGC------------------ATA---------------TGC------AA---CAGCATC--------AGCAGCA------G---C---ATCA------AC---------AGCAGCAGCATCAACAGCAACA------TCAACAGCAA---CAGC------A---------TCAAC---AG---CAGCAGCAACAACATCAGCAGCAGCAGCAACATCC-	Size	Hit Count	Total Norm	Total
No Reads

dm3

TACCACCATCCGCA-------------TTCGCATTCGCATCCGCATCATCACTA--------------C-CAGCAGCAC---------------------------TAT-------CCGCAGCAGCAA---------------------CAT---------------------------C---TGCAGCAA---------CAGCAAC---------------AGC------AG---CAGCA-----------TCACG---CCCAGCAGCAACA------TCAGC---------AGCAGCAGCAGCAACAGCAGCA------GCAGCAGCAG---CAGCACTGGGACTACTATGCCAGGC---AG---CAGCAGCAACATCAACAGCAGCAGCAGCAACAGCA-	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
..........................................................................................................................................................................................................................................................................................................................................................TACTATGCCAGGC---AG---CAGCAGCAACA.........................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................CACTGGGACTACTATGCCAGGC---AG---CAGCA...............................	29	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................CG---CCCAGCAGCAACA------TCAGC---------AGCA..........................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................CAGCAACA------TCAGC---------AGCAGCAGCAGCA.................................................................................................	26	15	0.53	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................T---------------------------C---TGCAGCAA---------CAGCAAC---------------AGC------AG---C......................................................................................................................................................................	23	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................CAGCAGCAACAGCAGCA------GCAGCA............................................................................	23	20	0.35	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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........................................................................................................................................................................................................CAGCAAC---------------AGC------AG---CAGCA-----------T......................................................................................................................................................	18	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................CAGCAGCAGCAGCAACAGC..	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................CAACA------TCAGC---------AGCAGCAGCAGCA.................................................................................................	23	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

AC--TCGGGTGGCA-------------GCCTG---GGAGCCGCCAGTGGAAGCA---------G------CGTGGGCGA---------------CTCC----------------CTGTGG---AGTAGCAGCGA-----------GGCCCAG---CAG---TTCCAGCA------GCAGCAGCAAC---------------AGCAGGCCC------------AGC------AA---CAAGCAC-----------A---------GCAGCAGCACCA------TC---------ACCACCAGCAGCAGCAGC---A------GTTACAGCAGCAACAAC------A---------ACAGG---CG---CAGCAGCAGCAACAACAGCAGCAGCACCATCACCA-	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
.................................................................................................................................AGCGA-----------GGCCCAG---CAG---TTCCAGCA------GC..................................................................................................................................................................................................................................	25	1	2.00	2	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0
....TCGGGTGGCA-------------GCCTG---GGAGCC..........................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
........................................CGCCAGTGGAAGCA---------G------CG...........................................................................................................................................................................................................................................................................................................................................	17	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...............................................................G------CGTGGGCGA---------------CTCC----------------CTGTGG---AGTAGCA.................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................AACAGCAGCAGCACCATC.....	18	6	0.50	3	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................AC-----------A---------GCAGCAGCACCA------TC---------ACCACC........................................................................................................	23	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................CAGCAGCAGCAACAACA...................	17	20	0.10	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
.................................................................................................................................................................................................................................................AC-----------A---------GCAGCAGCACCA------.........................................................................................................................	15	20	0.10	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................CAGCAGCAGCAACAACAGCAGCAGC...........	25	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAACAACAGCAGCAGCA..........	22	20	0.05	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................CA------GCAGCAGCAAC---------------AGCAGG....................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
....................................................................................................................................................................CAGCA------GCAGCAGCAAC---------------AGC.......................................................................................................................................................................................................	19	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSec2

TGA-TGCAGCAGCA-------------GCAGA---ATCT------------------------GCACA-C--------------------GCAGCACCAGCAC---AAT-------CTGCAGCAGCAACATCAGAGCCACTCA------CAGTTGCAG---C---AACA------T---------AA---C---------CAGC------------------AGCAACATCAG---CAGCAGC-----------A---------G---C---AACA------A---CAGC---AGCAACAACAGCAGCAACAACA------GCAGCAGCAA---CAGC------A---------GCAGC---AA---CAGCAGCAACAACAGCACCAACAGCAGCAGCAACA-	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
................................................................................................................................CATCAGAGCCACTCA------CAGTTGCA......................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0
...................................................................................................................................................................................................................................................................................A------A---CAGC---AGCAACAACAGC..................................................................................................	18	20	0.10	2	0	0	2	0
...........................................................................................................................................................................................................................................................................................................AACAGCAGCAACAACA------GC................................................................................	18	20	0.10	2	0	0	2	0
..............................................................................................................................................................................................................................................................................................................................................................................................CACCAACAGCAGCAGCAACA-	20	13	0.08	1	0	1	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................GCACCAACAGCAGCAGCA....	18	17	0.06	1	0	0	0	1
...................................................................................................................................................................................................................................................................................A------A---CAGC---AGCAACAACAGCAGCAAC............................................................................................	24	20	0.05	1	0	0	1	0
..................................................................................................................................................................................................................................................................................CA------A---CAGC---AGCAACAACAGCAG................................................................................................	21	20	0.05	1	1	0	0	0
................................................................................................................................................................................................................................................................................................................CAGCAACAACA------GCAGCAGCA.........................................................................	20	20	0.05	1	0	1	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................ACCAACAGCAGCAGCAACC-	19	20	0.05	1	0	0	1	0
........................................................................................................................................................................................................................................................................................................................ACA------GCAGCAGCAA---CAGC------A---------.................................................	18	20	0.05	1	0	0	1	0
...................................................................................................................................................................................................................................................................................A------A---CAGC---AGCAACAACAGCAGCAACA...........................................................................................	25	20	0.05	1	0	0	1	0
.................................................................................................................................................................................................................................................................................................................................................C------A---------GCAGC---AA---CAGCAGCAAC..........................	19	20	0.05	1	0	0	1	0
..........................................................................................................................................................................................................................................................................................................CAACAGCAGCAACAACA------GCAG..............................................................................	21	20	0.05	1	1	0	0	0
..............................................................................................................................................................................................................................AGCAACATCAG---CAGCAGC-----------.....................................................................................................................................................	18	20	0.05	1	0	0	1	0
.............................................................................................................................................................................................................................................AGCAGC-----------A---------G---C---AACA------A---CAGC---AGCA..........................................................................................................	22	20	0.05	1	0	0	1	0

droYak3

C------AGTTGCA-------------GCAAC---ACAG-----------------------------T-CAGCAGCAA---------------------------AGT-------CAGCAGCAGCAACA---------------GCAGCAGCAGCAA---CAACAGCA------ACAGC---AGC------------------------------------AGC---AGCAG---CAACAGCA--------ACA---------G---C---AGCAGCAGC------------AACAACAGCAACAGCAGCAACA------GCAGCAACAG---CAGC------A---------ACAAC---AA---CAGCAGCAACAGCAGCAGTTACAGCTGCAGCAACA-	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
................................................................................................................................................................................................................................................AGCA--------ACA---------G---C---AGCAGCAGC------------AACAACAGC.....................................................................................................	27	20	1.20	24	0	0	0	0	0	0	0	0	0	0	24
...........................................................................................................................AGCAACA---------------GCAGCAGCAGCAA---CAACAGC...........................................................................................................................................................................................................................................	27	20	1.20	24	0	0	0	0	0	0	0	0	0	0	24
C------AGTTGCA-------------GCAAC---ACAG-----------------------------T-CAG..........................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................AA---CAGCAGCAACAGCAGCAGTT................	22	3	0.33	1	0	0	0	0	0	0	1	0	0	0	0
............................................................................................................................................................AA---CAACAGCA------ACAGC---AGC------------------------------------AGC---AGCAG---C......................................................................................................................................................................	27	4	0.25	1	0	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................AGCAACAG---CAGC------A---------ACAAC---AA---CAGCA...............................	25	12	0.08	1	0	1	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................C------A---------ACAAC---AA---CAGCAGCAACAGC.......................	22	18	0.06	1	0	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................AGCAA---CAACAGCA------ACAGC---AGC------------------------------------.....................................................................................................................................................................................	21	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................ACAGC---AGC------------------------------------AGC---AGCAG---CA.....................................................................................................................................................................	18	20	0.05	1	0	0	0	1	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................CA--------ACA---------G---C---AGCAGCAGC------------AACA..........................................................................................................	20	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................GC---AGCAG---CAACAGCA--------ACA---------G---C---AGCAGCA............................................................................................................................	27	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
............................................................................................................................GCAACA---------------GCAGCAGCAGCAA---CAA...............................................................................................................................................................................................................................................	22	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................ACAACAGCAACAGCAGCA...........................................................................................	18	20	0.05	1	0	0	0	1	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................AGC------------AACAACAGCAACAGCAGC............................................................................................	21	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................ACAG---CAGC------A---------ACAAC---AA---CAGC................................	20	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................GC------------------------------------AGC---AGCAG---CAACAGCA--------AC.....................................................................................................................................................	20	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................GCA------ACAGC---AGC------------------------------------AGC---AGCAG---CA.....................................................................................................................................................................	21	20	0.05	1	0	0	0	0	1	0	0	0	0	0	0
......................................................................................................................GCAGCAGCAACA---------------GCAGCAGCAGCA......................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	0	1	0	0	0	0	0	0
.............................................................................................................................................................A---CAACAGCA------ACAGC---AGC------------------------------------A....................................................................................................................................................................................	18	20	0.05	1	0	0	0	1	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................CAGCAACA------GCAGCAACAG---CA...................................................................	20	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................AGCAACAG---CAGC------A---------ACAAC---AA---....................................	20	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................AGCAG---CAACAGCA--------ACA---------G---C---AGC................................................................................................................................	21	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................AACAGCAACAGCAGCAACA------G.................................................................................	20	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................C---AA---CAGCAGCAACAGCAGCA...................	20	20	0.05	1	0	0	0	1	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................AACA------GCAGCAACAG---CAGC------...........................................................	18	20	0.05	1	0	0	0	1	0	0	0	0	0	0	0

droEre2

C------AGTTGCA-------------GCAAC---ACAA-----------------------------C-CAGCAGCA---------------GCATCAG----------------CAGC---AGCAGCA---------------GCAGCAT---CA---------------------------------A---------CAGCAGCAGCAGCAGCAACAGCAGC------------AACAGCA-----GCAACAGCA------GC------AG------CAGCAACAAC---AGCAACAGCAGCAGCAGCAAC---------AGCAGCAG---CATC------A---------ACAGC---AACAGCAGCAACAGCAACAGCAGCAGCAGTTGCAGCCACA-	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
...........................GCAAC---ACAA-----------------------------C-CAGCAGCA---------------GCATCAG----------------CA.............................................................................................................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................AACAGCAACAGCAGCAGCAGTT..........	22	2	0.50	1	0	0	0	1	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................ACAGCAACAGCAGCAGCAGTT..........	21	2	0.50	1	0	0	0	0	0	1	0
......................................................................................................................................................................................................................................................................................................................................AGCAG---CATC------A---------ACAGC---AACA.....................................	19	3	0.33	1	0	0	0	0	1	0	0
.................................................................................................................................................GCAGCAT---CA---------------------------------A---------CAGCAGCAGCAGCAGC...........................................................................................................................................................................................	26	4	0.25	1	0	1	0	0	0	0	0
.................................................................................................................................................................................................................................................GCA-----GCAACAGCA------GC------AG------CAGC.......................................................................................................................	20	20	0.15	3	1	0	0	0	0	2	0
........................................................................GCAGCA---------------GCATCAG----------------CAGC---AGC.....................................................................................................................................................................................................................................................................................	20	20	0.10	2	2	0	0	0	0	0	0
.............................................................................................................................................................................................................................................AACAGCA-----GCAACAGCA------GC------A..................................................................................................................................	19	20	0.10	2	0	0	0	2	0	0	0
......................................A-----------------------------C-CAGCAGCA---------------GCATCAG----------------C..............................................................................................................................................................................................................................................................................................	18	10	0.10	1	0	0	0	0	0	1	0
.............................................................................................................................................................................................................................CAGC------------AACAGCA-----GCAACAGCA------GC------A..................................................................................................................................	23	20	0.10	2	1	0	0	0	1	0	0
...................................................................................................................................................................................................................................................................................................................................................................................AACAGCAACAGCAGCAGC..............	18	20	0.10	2	0	0	0	0	0	2	0
.................................................................................................................................................................................................................................................................................G------CAGCAACAAC---AGCAACAGCAGCA.................................................................................................	24	12	0.08	1	0	0	0	0	0	1	0
.....................................................................................................................AGC---AGCAGCA---------------GCAGCAT---CA---------------------------------A---------CA.........................................................................................................................................................................................................	22	12	0.08	1	1	0	0	0	0	0	0
.....................................................................................................................................................CAT---CA---------------------------------A---------CAGCAGCAGCAGCAGC...........................................................................................................................................................................................	22	16	0.06	1	0	0	0	1	0	0	0
.........................................................................................................................................................................................................................................................................................AGCAACAAC---AGCAACAGCAGCA.................................................................................................	22	16	0.06	1	0	0	0	0	0	1	0
......................................................................................................................................................................................................................................................................................................................................................................................AGCAACAGCAGCAGCAGT...........	18	19	0.05	1	1	0	0	0	0	0	0
.........................................................................CAGCA---------------GCATCAG----------------CAGC---AGCAGC..................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	1	0
..........................................................................................................................................................................................................................................................................................GCAACAAC---AGCAACAGCAGC..................................................................................................	20	20	0.05	1	0	1	0	0	0	0	0
...................................................................................................................................................................................................................GCAGCAACAGCAGC------------AACAGCA-----GCA.......................................................................................................................................................	24	20	0.05	1	0	0	0	0	1	0	0
..............................................................................................................................................................................................................................AGC------------AACAGCA-----GCAACAGCA------GC------AG------CAGC.......................................................................................................................	27	20	0.05	1	1	0	0	0	0	0	0
..............................................................................................................................................................................................................................AGC------------AACAGCA-----GCAACAGCA------...........................................................................................................................................	19	20	0.05	1	0	0	0	0	1	0	0
....................................................................................................................................................................................................................................................................................................................................................................AGC---AACAGCAGCAACAGCA.........................	19	20	0.05	1	0	0	0	0	1	0	0
.............................................................................................................................................................................................................................................................................................ACAAC---AGCAACAGCAGCAGC...............................................................................................	20	20	0.05	1	1	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................ACAGCAGCAGCAGCAAC---------AGC.............................................................................	20	20	0.05	1	1	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................CAACAGCAGCAGCAGCAAC---------AGCA............................................................................	23	20	0.05	1	0	0	0	0	0	1	0
........................................................................................................................................................................................................................................................................................................AACAGCAGCAGCAGCAAC---------AGCAGCA.........................................................................	25	20	0.05	1	0	0	0	1	0	0	0
......................................................................................................................................................AT---CA---------------------------------A---------CAGCAGCAGCAGCA.............................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	1	0
.............................................................................................................................................................................................................GCAGCAGCAGCAACAGCA....................................................................................................................................................................................	18	20	0.05	1	1	0	0	0	0	0	0
...........................................................................................................................................................................................................................AGCAGC------------AACAGCA-----GCAACAGCA------GC------AG------...........................................................................................................................	26	20	0.05	1	1	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................GCAGCAGCAAC---------AGCAGCAG---CA...................................................................	21	20	0.05	1	0	0	0	1	0	0	0
...........................................................................................................................................................................................................................................................................................CAACAAC---AGCAACAGCAGCAG................................................................................................	21	20	0.05	1	0	0	0	1	0	0	0
...................................................................................................................................................................................................................................................A-----GCAACAGCA------GC------AG------CAGCA......................................................................................................................	19	20	0.05	1	0	0	0	1	0	0	0
.....................................................................................................................................................CAT---CA---------------------------------A---------CAGCAGCAGCAGCA.............................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	1	0
...........................................................................................................................................................................................................................................................................................................................................................................ACAGCAGCAACAGCAACAGC....................	20	20	0.05	1	0	1	0	0	0	0	0
...............................................................................................................................................................................................................AGCAGCAGCAACAGCAGC------------A.....................................................................................................................................................................	19	20	0.05	1	0	0	0	1	0	0	0
...............................................................................................................................................................................................................................................................................................................GCAGCAGCAAC---------AGCAGCAG---C....................................................................	20	20	0.05	1	1	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................AACAGCAGCAGCAGCAAC---------AGCAGC..........................................................................	24	20	0.05	1	0	0	0	0	0	1	0
...........................................................................................................................................................................................................................................................................................CAACAAC---AGCAACAGCAGCA.................................................................................................	20	20	0.05	1	0	1	0	0	0	0	0
.........................................................................................................................................................................................................AGCAGCAGCAGCAGCAACAGCAGC------------......................................................................................................................................................................	24	20	0.05	1	0	1	0	0	0	0	0
...........................................................................GCA---------------GCATCAG----------------CAGC---AGCAGCA---------------..................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	1	0	0
.................................................................................................................................................................................................................................................GCA-----GCAACAGCA------GC------AG------CAGCAA.....................................................................................................................	22	20	0.05	1	1	0	0	0	0	0	0
..............................................................................................CATCAG----------------CAGC---AGCAGCA---------------GCAGCA............................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	1	0	0	0
.............................................................................................GCATCAG----------------CAGC---AGCAGCA---------------GCA...............................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	1	0
.........................................................................................................................................................................................................................................................GCAACAGCA------GC------AG------CAGCAACA...................................................................................................................	21	20	0.05	1	0	0	0	0	0	1	0
.................................................................................................................................................................................................................................................................................................C---AGCAACAGCAGCAGCAGC............................................................................................	19	20	0.05	1	0	1	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................CAACAAC---AGCAACAGCAGC..................................................................................................	19	20	0.05	1	1	0	0	0	0	0	0
..............................................................................................................................................................................................................................................ACAGCA-----GCAACAGCA------GC------A..................................................................................................................................	18	20	0.05	1	0	0	0	0	1	0	0
....................................................................................................................................................................................................................CAGCAACAGCAGC------------AACAGCA-----GCA.......................................................................................................................................................	23	20	0.05	1	1	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................CAGCAGCAGCAGCAAC---------AGC.............................................................................	19	20	0.05	1	0	0	0	0	0	1	0
..................................................................................................................................................................................................................................................CA-----GCAACAGCA------GC------AG------CAGCAAC....................................................................................................................	22	20	0.05	1	0	1	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................CAAC---AGCAACAGCAGCAGCAGCA...........................................................................................	23	20	0.05	1	0	0	0	1	0	0	0
........................................................................GCAGCA---------------GCATCAG----------------CAGC---AGCAGC..................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	1	0	0	0	0	0

dgr_218

scaffold_14906:11707643-11707741 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads