dgr_19

TATTGTATTTAAACGTGGAGTGTTTCAATTTCCAACTGGACGGTTTCTCCGAGCGGGCATGAGAGTTTTATTTGCTTGCATTTTATATCAAATACAATTTGATGTTCGCTAGGAGGCATTGTCCACATGCAACAACAAACACATGAACAAAAGAGCTAAGCACT *********************************.((((((((.(((((.(((((((((..(((((.((((((..............)))))).))))).))))))))).))))).))))))))...**********************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V109 male body
...........................................................................................ATACAATTTGATGTTCGCTAGG...................................................	22	0	1	22.00	22	22
..................................................GAGCGGGCATGAGAGTTTTATTT...........................................................................................	23	0	1	2.00	2	2
..................................................GAGCGGGCATGAGAGTTTTATT............................................................................................	22	0	1	2.00	2	2
...........................................................................................ATACAATTTGATGTTCGCTAG....................................................	21	0	1	2.00	2	2
...........................................................................................ATACAATTTGATGTTCGCTAGGT..................................................	23	1	1	1.00	1	1
..................................................GATCGGGCATGAGCGTTTTATTT...........................................................................................	23	2	1	1.00	1	1
...........................................................................................ATACAGTTTGATGTTCGCTAGG...................................................	22	1	1	1.00	1	1

Species	Coordinate	ID	Type	Alignment
droGri2	scaffold_15081:2050955-2051118 -	dgr_19	candidate-rescued	TATTGTATTTAAACGTGGAGTGTTTCAATTTCCAACTGGACGGTTTCTCCGAGCGGGCATGAGAGTTTTATTTGCTTGCATTTTATA--TCAAATACAA-----TTTGATGTTCGCTAGGAGGCATTGTCCACATGCAACAA-------------------CAAACACATGAACA-AAAGAGCTAAGCACT
droVir3	scaffold_13042:917545-917684 -	dvi-mir-974-2	Known_mirbase	CAATACATCCGAATATGAGATTTACCAATTATTAACTGGGCATTCCCTCTGAGCGAGCAGAGAAGTATTATTTGCGTGAATCTGATA--TCAAATAAGACTTTTTTGG---TTCGCTATGAGGTATTGTTCATAAA-------------------------TAAACA---------------------CGT
droMoj3	scaffold_6496:18752790-18752882 -			TTTAATATACATATATCCCA---ATTAAATGTATTTTTGCTG---------------------------------------------------------------------TTCTCTTAAAG-CA--ATTCAAATGCAAA--------AATACTCAAAGTC---------------TATAAGCCAATCAAT
droWil2	scf2_1100000004902:3977087-3977237 +			CATTTATATTAAAAGTGGATACTTTGCACTTTCAAGTGGATTATCAGTTAATTAATGC-------AATTATTTGGTTTCGTTTAATGACTTTGAAGTAA-----TTGG---ATATTTGTGAGGCAATATTTATTTA-------------------------CGACCACATAGTTTTGCTCGACTAAAATTT
dp5	XL_group1e:7489387-7489436 -			CCACATGCACAC---------------------------------------------------------------------------------------------------------------------------------ACACACACGCGTTCACAACT-CA----------C-AAAGGGATAATTTAC
droPer2	scaffold_1:5855801-5855830 -			CAATAAACAGAG------------------------------------------------------------------------------------------------------------------------------------------------------CA----------A-AACGCAGTAAACATT
droAna3	scaffold_13340:4981-4986 -			A-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCACT
droKik1	scf7180000301816:324341-324351 -			AGC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAAACACT
droEug1	scf7180000409672:5447404-5447423 +			GAAAG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGAGGGTTAAGCTCT
droSec2	scaffold_21:514153-514198 -			TATCGG------------------------------------------------------------------------------------------------------------------------------CAGACAAAAA-------------------CAACAACATGAGCATAAGGAGCATAACGTG
droYak3	X:4182572-4182578 -			AAG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAAT

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droGri2

TATTGTATTTAAACGTGGAGTGTTTCAATTTCCAACTGGACGGTTTCTCCGAGCGGGCATGAGAGTTTTATTTGCTTGCATTTTATA--TCAAATACAA-----TTTGATGTTCGCTAGGAGGCATTGTCCACATGCAACAA-------------------CAAACACATGAACA-AAAGAGCTAAGCACT	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
.............................................................................................ATACAA-----TTTGATGTTCGCTAGG.......................................................................	22	1	22.00	22	0	22
..................................................GAGCGGGCATGAGAGTTTTATTT......................................................................................................................	23	1	2.00	2	0	2
..................................................GAGCGGGCATGAGAGTTTTATT.......................................................................................................................	22	1	2.00	2	0	2
.............................................................................................ATACAA-----TTTGATGTTCGCTAG........................................................................	21	1	2.00	2	0	2
.............................................................................................ATACAA-----TTTGATGTTCGCTAGGT......................................................................	23	1	1.00	1	0	1

droVir3

CAATACATCCGAATATGAGATTTACCAATTATTAACTGGGCATTCCCTCTGAGCGAGCAGAGAAGTATTATTTGCGTGAATCTGATA--TCAAATAAGACTTTTTTGG---TTCGCTATGAGGTATTGTTCATAAA-------------------------TAAACA---------------------CGT	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells	SRR2096013 Ovary_Strain_9_oxidized	SRR2096014 Ovary_Strain_160_oxidized	SRR2096026 embryo_0-2h from 14 day old Strain 9 mothers	SRR2096038 embryo_0-2h from 14 day old Strain 9 mothers	SRR2096050 embryo_0-2h from 14 day old Strain 160 mothers	SRR2096055 Ovary_Min_43	SRR2096056 Ovary_Min_46	SRR2096057 Ovary_Min_50	SRR2096058 Ovary_Min_98	SRR2096059 Ovary_Min_164	SRR2096060 Ovary_Min_193	SRR2096061 embryo_0-2h from 14 day old Strain 160 mothers	SRR2096072 embryo_0-2h from 15to16 day old dysgenic mothers	SRR2096079 embryo_0-2h from 15to16 day old dysgenic mothers	SRR2096080 embryo_0-2h from 15to16 day old nondysgenic mothers	SRR2096081 embryo_0-2h from 15to16 day old nondysgenic mothers
..................................................GAGCGAGCAGAGAAGTATTAT........................................................................................................................	21	1	30295.00	30295	6	0	10	0	9	735	2	2310	53	3259	12	0	1	1	2	0	0	0	3	0	1069	6	1	8	7	6	9	9	6361	6120	1793	6861	1	624	6	1	3	2	7	651	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	340	0	0	0	1	2	0	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................TAAGACTTTTTTGG---TTCGCTATG.......................................................................	23	1	9970.00	9970	5	0	13	0	5	300	7	57	0	117	0	0	0	0	1	0	0	0	2	0	510	3	1	4	2	1	1	2	2317	1786	657	2804	0	404	0	0	1	4	2	935	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	20	0	0	2	2	1	0	0	1	0	0	0	0	0	0	0	1	0
..............................................................................................TAAGACTTTTTTGG---TTCGCTAT........................................................................	22	1	5421.00	5421	0	0	2	0	0	147	2	71	0	54	0	0	0	0	0	0	0	0	2	0	194	0	0	0	2	1	1	1	1515	1061	467	1382	0	140	0	0	0	0	0	361	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	18	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................GAGCGAGCAGAGAAGTATTATC.......................................................................................................................	22	1	4748.00	4748	2	0	12	0	1	148	2	1	3	219	0	0	0	0	0	0	0	0	0	0	399	2	0	1	0	0	0	0	902	863	408	1180	0	262	0	0	0	0	0	181	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	162	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................GAGCGAGCAGAGAAGTATTC.........................................................................................................................	20	1	4144.00	4144	1	0	19	0	4	189	2	0	7	353	3	0	0	0	0	0	0	0	1	0	237	0	0	2	0	1	1	0	659	878	321	1023	0	169	0	0	0	0	0	205	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	63	0	0	0	0	0	0	1	0	1	1	1	2	0	0	0	0	0
..................................................GAGCGAGCAGAGAAGTATTA.........................................................................................................................	20	1	3985.00	3985	1	0	1	0	4	65	0	61	2	183	0	0	0	0	0	0	0	0	0	0	167	0	0	1	1	1	1	3	773	943	318	1128	0	134	0	0	0	0	1	121	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	76	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................ATAAGACTTTTTTGG---TTCGCTAT........................................................................	23	1	3562.00	3562	0	0	1	0	2	100	2	30	0	38	0	0	0	0	0	0	0	0	0	0	115	0	0	2	0	2	2	0	1003	767	278	869	0	115	0	0	1	0	4	217	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	10	0	0	0	0	0	0	2	0	0	0	2	0	0	0	0	0	0
.............................................................................................ATAAGACTTTTTTGG---TTCGCT..........................................................................	21	1	3060.00	3060	7	0	3	0	3	309	0	81	1	85	1	0	0	0	0	0	0	0	1	0	124	0	0	4	1	2	1	3	566	552	183	644	0	145	1	1	0	0	0	324	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	9	0	0	0	1	0	0	1	2	0	1	2	2	0	0	0	0	0
.............................................................................................ATAAGACTTTTTTGG---TTCGCTATG.......................................................................	24	1	2923.00	2923	15	0	2	0	2	89	4	18	0	40	0	0	0	0	0	0	0	1	0	0	107	0	0	0	0	4	2	1	885	519	224	687	0	78	0	0	0	0	3	224	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	13	0	1	3	0	0	0	0	1	0	0	0	0	0	0	0	0	0
..................................................GAGCGAGCAGAGAAGTATT..........................................................................................................................	19	1	2778.00	2778	0	0	2	0	2	69	1	987	8	417	2	0	0	0	1	0	0	0	0	0	68	0	0	4	2	1	4	3	328	369	86	297	0	50	0	0	0	0	0	40	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	36	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................GAGCGAGCAGAGAAGTATTATTT......................................................................................................................	23	1	1645.00	1645	0	1	0	0	0	43	0	193	1	126	1	0	0	0	0	0	0	1	1	1	63	0	1	0	0	0	0	2	391	318	84	318	0	37	0	0	0	0	0	39	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	23	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
..................................................GAGCGAGCAGAGAAGTATTATCC......................................................................................................................	23	1	1201.00	1201	1	0	6	0	1	67	0	0	0	37	0	0	0	0	0	0	0	0	0	0	157	0	0	0	0	1	0	0	128	165	99	341	0	95	0	0	0	0	0	62	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	41	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................TAAGACTTTTTTGG---TTCGCTA.........................................................................	21	1	1039.00	1039	0	0	3	0	0	57	0	9	0	8	0	0	0	0	0	0	0	0	0	0	58	0	0	1	0	0	1	0	229	192	97	255	0	39	0	0	0	0	0	87	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................GAGCGAGCAGAGAAGTATTATT.......................................................................................................................	22	1	1011.00	1011	0	0	1	0	2	14	0	185	2	113	0	0	0	0	1	2	0	0	0	0	36	0	0	2	0	0	1	0	222	158	41	180	0	13	0	0	0	0	0	19	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	18	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................TAAGACTTTTTTGG---TTCGCT..........................................................................	20	1	959.00	959	1	0	0	0	0	117	0	26	0	21	0	0	0	0	0	0	0	0	0	0	54	0	0	2	0	0	1	0	152	183	69	186	0	52	0	0	0	0	0	91	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	1	1	1	0	0	0	0	0	0	0
.............................................................................................ATAAGACTTTTTTGG---TTCGCTA.........................................................................	22	1	604.00	604	0	0	1	0	0	24	0	8	0	13	0	0	0	0	0	0	0	0	0	0	9	0	0	1	0	0	0	0	164	120	35	120	0	26	0	0	0	0	0	69	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	7	0	0	0	0	0	0	3	0	1	0	3	0	0	0	0	0	0
..................................................GAGCGAGCAGAGAAGTATTATTC......................................................................................................................	23	1	540.00	540	1	0	0	0	0	27	0	1	1	34	0	0	0	0	0	0	0	0	0	0	29	0	0	0	0	0	0	0	128	87	38	132	0	14	0	0	0	0	0	27	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	14	0	0	0	0	0	0	5	0	1	0	0	0	0	0	0	0	0
..............................................................................................TAAGACTTTTTTGG---TTCGCTATGT......................................................................	24	1	522.00	522	0	0	0	0	1	26	2	29	0	30	0	0	0	0	0	0	0	0	0	0	28	0	0	0	0	0	0	2	85	74	22	118	0	28	0	0	0	0	0	75	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................TAAGACTTTTTTGG---TTCGCTATC.......................................................................	23	1	417.00	417	1	0	0	0	1	5	1	0	0	4	0	0	0	0	0	0	0	0	0	0	28	1	0	0	0	0	0	0	83	64	47	98	0	21	0	0	0	0	0	60	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
..................................................GAGCGAGCAGAGAAGTAT...........................................................................................................................	18	1	322.00	322	0	0	0	0	1	10	0	118	5	48	1	0	0	0	0	0	0	0	0	0	4	0	0	2	1	2	1	0	38	51	9	28	0	2	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................GAGCGAGCAGAGAAGTATTAA........................................................................................................................	21	1	295.00	295	0	0	0	0	0	2	0	1	0	16	0	0	0	0	0	0	0	0	0	0	12	0	0	0	0	1	1	1	47	66	29	100	1	7	1	2	1	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
..................................................GAGCGAGCAGAGAAGTATTCC........................................................................................................................	21	1	241.00	241	0	0	0	0	0	26	0	0	1	14	0	0	0	0	0	0	0	0	0	0	19	0	0	0	0	0	0	0	24	46	17	60	0	15	0	0	0	0	0	13	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................ATAAGACTTTTTTGG---TTCGCTC.........................................................................	22	1	222.00	222	8	0	0	0	0	24	0	0	0	2	0	0	0	0	0	0	0	0	0	0	14	0	0	0	0	0	0	0	26	25	23	48	0	14	0	0	0	0	0	35	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................ATAAGACTTTTTTGG---TTCGCTATGT......................................................................	25	1	217.00	217	0	0	0	0	0	12	0	11	0	7	0	0	0	0	0	0	0	0	0	0	10	0	0	0	0	0	0	0	66	36	9	41	0	4	0	0	0	0	0	21	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................GAGCGAGCAGAGAAGTATTT.........................................................................................................................	20	1	203.00	203	0	0	1	0	0	1	1	46	0	36	1	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	1	23	42	9	31	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................ATAAGACTTTTTTGG---TTCGCTT.........................................................................	22	1	188.00	188	0	0	0	0	0	19	1	0	0	1	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	38	31	13	52	0	6	0	0	0	0	0	21	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................ATAAGACTTTTTTGG---TTCGCTATC.......................................................................	24	1	151.00	151	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	7	0	0	0	0	0	0	0	47	23	10	45	0	4	0	0	0	0	0	10	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................GAGCGAGCAGAGAAGTATTATTTC.....................................................................................................................	24	1	144.00	144	0	0	0	0	0	3	0	0	0	10	0	0	0	0	0	0	0	0	1	0	12	0	0	0	0	0	0	0	30	31	9	33	0	10	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................TAAGACTTTTTTGG---TTCGCTATCC......................................................................	24	1	130.00	130	0	0	2	0	0	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6	0	0	0	0	0	0	0	14	22	22	41	0	7	0	0	0	0	0	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................TAAGACTTTTTTGG---TTCGCTC.........................................................................	21	1	99.00	99	0	0	0	0	0	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	10	0	0	0	0	1	0	0	6	27	9	15	0	9	0	0	0	0	0	14	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................ATAAGACTTTTTTGG---TTCGC...........................................................................	20	1	99.00	99	0	0	1	0	0	7	0	3	1	1	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	1	0	0	20	29	8	18	0	3	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................TAAGACTTTTTTGG---TTCGCTATGA......................................................................	24	1	82.00	82	0	0	0	0	0	2	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	25	12	5	27	0	2	0	0	0	0	0	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................TAAGACTTTTTTGG---TTCGCTATT.......................................................................	23	1	71.00	71	0	0	0	0	0	1	0	0	0	3	0	0	0	0	0	0	0	0	0	0	10	0	0	0	0	0	0	0	14	9	3	17	0	8	0	0	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................CTTTTTTGG---TTCGCTATG.......................................................................	18	1	59.00	59	0	0	0	0	0	1	0	4	0	3	0	0	0	0	0	0	0	0	0	0	6	0	0	0	0	0	0	0	9	3	7	12	0	5	0	0	0	0	0	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................GAGCGAGCAGAGAAGTATC..........................................................................................................................	19	1	51.00	51	0	0	0	0	0	2	0	1	0	8	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0	0	5	10	2	12	0	3	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
..................................................GAGCGAGCAGAGAAGTATTCA........................................................................................................................	21	1	51.00	51	0	0	2	0	0	1	0	0	0	6	0	0	0	1	0	0	0	0	0	0	3	0	0	0	0	0	1	1	5	6	1	17	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................GAGCGAGCAGAGAAGTATCC.........................................................................................................................	20	1	49.00	49	0	0	0	0	0	1	0	0	1	8	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	7	9	3	11	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................TAAGACTTTTTTGG---TTCGCTT.........................................................................	21	1	39.00	39	0	0	0	0	0	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	8	3	5	9	0	1	0	0	0	0	0	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................TAAGACTTTTTTGG---TTCGCTATGTC.....................................................................	25	1	36.00	36	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	8	9	1	2	0	6	0	0	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................TAAGACTTTTTTGG---TTCGCTATTC......................................................................	24	1	36.00	36	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	9	6	3	15	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................AGCGAGCAGAGAAGTATTAT........................................................................................................................	20	1	32.00	32	0	0	0	0	0	2	0	3	0	4	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	4	4	0	8	0	1	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................TAAGACTTTTTTGG---TTCGC...........................................................................	19	1	32.00	32	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	12	5	0	9	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0
.............................................................................................ATAAGACTTTTTTGG---TTCGCTATT.......................................................................	24	1	31.00	31	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	8	6	2	5	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................ATAAGACTTTTTTGG---TTCGCTATCC......................................................................	25	1	30.00	30	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	6	10	10	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................ATAAGACTTTTTTGG---TTCG............................................................................	19	1	28.00	28	0	0	0	0	0	0	0	3	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6	3	1	3	0	1	0	0	0	0	0	10	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................GAGCGAGCAGAGAAGTATTAC........................................................................................................................	21	1	28.00	28	0	0	0	0	0	0	0	4	0	3	0	0	0	0	0	0	0	0	0	0	6	0	0	0	0	0	0	0	2	1	2	6	0	1	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................GAGCAGAGAAGTATTATC.......................................................................................................................	18	1	27.00	27	0	0	0	0	0	2	0	0	0	1	0	0	0	0	0	0	0	0	0	0	8	0	0	0	0	0	0	0	2	3	0	3	0	2	0	0	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................TAAGACTTTTTTGG---TTCGCTATA.......................................................................	23	1	27.00	27	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	5	4	5	8	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................CGAGCAGAGAAGTATTAT........................................................................................................................	18	1	23.00	23	0	0	1	0	0	0	0	4	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	1	11	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................TAAGACTTTTTTGG---TTCGCTATGTCC....................................................................	26	1	22.00	22	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	5	4	1	7	0	1	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................ATAAGACTTTTTTGG---TTCGCTATTC......................................................................	25	1	22.00	22	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	10	5	0	5	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................AAGACTTTTTTGG---TTCGCTATG.......................................................................	22	1	21.00	21	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6	4	3	3	0	0	0	0	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................GAGCGAGCAGAGAAGTATTATA.......................................................................................................................	22	1	21.00	21	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	9	3	0	6	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................ATAAGACTTTTTTGG---TTCGCC..........................................................................	21	1	21.00	21	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	5	4	0	8	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................GAGCGAGCAGAGAAGTATTAAA.......................................................................................................................	22	1	20.00	20	0	0	0	0	0	0	0	0	0	0	0	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	2	3	6	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	1	0
..................................................GAGCGAGCAGAGAAGTATTATCCC.....................................................................................................................	24	1	18.00	18	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0	0	2	2	0	6	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................ACTTTTTTGG---TTCGCTATG.......................................................................	19	1	18.00	18	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	1	0	0	1	6	2	2	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................GCGAGCAGAGAAGTATTAT........................................................................................................................	19	1	17.00	17	0	0	0	0	0	0	0	3	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	5	1	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................TAAGACTTTTTTGG---TTCGCTATCT......................................................................	24	1	17.00	17	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	2	4	7	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................GAGCGAGCAGAGAAGTATTAG........................................................................................................................	21	1	17.00	17	0	0	0	0	0	2	0	4	0	1	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	1	0	2	3	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................GAGCGAGCAGAGAAGTATTTC........................................................................................................................	21	1	17.00	17	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	5	1	3	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................TAAGACTTTTTTGG---TTCGCTATGC......................................................................	24	1	16.00	16	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	4	1	8	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................ATAAGACTTTTTTGG---TTCGCTTC........................................................................	23	1	15.00	15	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	3	1	0	3	0	1	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................TAAGACTTTTTTGG---TTCG............................................................................	18	1	15.00	15	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	5	0	2	0	1	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................ATAAGACTTTTTTGG---TTCGCTATGTC.....................................................................	26	1	15.00	15	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	2	5	2	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................AAGACTTTTTTGG---TTCGCTAT........................................................................	21	1	15.00	15	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	5	2	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................GAGCGAGCAGAGAAGTATTATTCC.....................................................................................................................	24	1	13.00	13	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	2	1	1	6	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................GAGCGAGCAGAGAAGTATTCCC.......................................................................................................................	22	1	12.00	12	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	1	3	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................TAAGACTTTTTTGG---TTCGCC..........................................................................	20	1	12.00	12	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	3	1	3	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................ATAAGACTTTTTTGG---TTCGCTATCT......................................................................	25	1	11.00	11	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	3	1	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................GAGCGAGCAGAGAAGTATTATCA......................................................................................................................	23	1	9.00	9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	2	1	2	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................ATAAGACTTTTTTGG---TTCGCTATA.......................................................................	24	1	9.00	9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	4	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................TAAGACTTTTTTGG---TTCGCTAA........................................................................	22	1	9.00	9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	2	0	3	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................ATAAGACTTTTTTGG---TTCGCTATGTCC....................................................................	27	1	8.00	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	2	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................TAAGACTTTTTTGG---TTCGCTAC........................................................................	22	1	8.00	8	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................ATAAGACTTTTTTGG---TTCGCTATGA......................................................................	25	1	8.00	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	1	1	3	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................GAGCGAGCAGAGAAGTATTG.........................................................................................................................	20	1	8.00	8	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	1	0	0	3	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................CGAGCAGAGAAGTATTATC.......................................................................................................................	19	1	7.00	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	1	2	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................GCGAGCAGAGAAGTATTC.........................................................................................................................	18	1	7.00	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	1	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................TAAGACTTTTTTGG---TTCGCTATTT......................................................................	24	1	7.00	7	0	0	0	0	0	0	0	3	0	1	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................ATAAGACTTTTTTGG---TTCGCTATGC......................................................................	25	1	7.00	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	2	1	2	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................TAAGACTTTTTTGG---TTCGCTTC........................................................................	22	1	7.00	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	2	0	1	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................GAGCAGAGAAGTATTATCC......................................................................................................................	19	1	7.00	7	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	1	1	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................GAGCAGAGAAGTATTATTT......................................................................................................................	19	1	6.00	6	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................TAAGACTTTTTTGG---TTCGCTATGTT.....................................................................	25	1	6.00	6	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................TAAGACTTTTTTGG---TTCGCTATGAA.....................................................................	25	1	6.00	6	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	3	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................TAAGACTTTTTTGG---TTCGCTATGG......................................................................	24	1	5.00	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................GAGCGAGCAGAGAAGTATTACC.......................................................................................................................	22	1	5.00	5	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................GCGAGCAGAGAAGTATTATC.......................................................................................................................	20	1	5.00	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................ATTAACTGGGCATTCCCTCT.............................................................................................................................................	20	1	5.00	5	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................AGCGAGCAGAGAAGTATTA.........................................................................................................................	19	1	5.00	5	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................TGCGTGAATCTGATA--TCAAA.................................................................................................	20	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................CTTTTTTGG---TTCGCTATGT......................................................................	19	1	4.00	4	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................ATAAGACTTTTTTGG---TTCGCTAA........................................................................	23	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................AGCGAGCAGAGAAGTATTATC.......................................................................................................................	21	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	1	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................CTTTTTTGG---TTCGCTATC.......................................................................	18	1	4.00	4	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................GAGCAGAGAAGTATTATT.......................................................................................................................	18	1	4.00	4	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................ATAAGACTTTTTTGG---TTCGCTATGTCT....................................................................	27	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	2	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................TAAGACTTTTTTGG---TTCGCTATGAAA....................................................................	26	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	2	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................TAAGACTTTTTTGG---TTCGCTATCCC.....................................................................	25	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	2	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................TAAGACTTTTTTGG---TTCGCTATGTCT....................................................................	26	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................GAGCGAGCAGAGAAGTATTACCC......................................................................................................................	23	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

TTTAATATACATATATCCCA---ATTAAATGTATTTTTGCTG---------------------------------------------------------------------TTCTCTTAAAG-CA--ATTCAAATGCAAA--------AATACTCAAAGTC---------------TATAAGCCAATCAAT	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
No Reads

droWil2

CATTTATATTAAAAGTGGATACTTTGCACTTTCAAGTGGATTATCAGTTAATTAATGC-------AATTATTTGGTTTCGTTTAATGACTTTGAAGTAA-----TTGG---ATATTTGTGAGGCAATATTTATTTA-------------------------CGACCACATAGTTTTGCTCGACTAAAATTT	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
No Reads

dp5

CCACATGCACAC---------------------------------------------------------------------------------------------------------------------------------ACACACACGCGTTCACAACT-CA----------C-AAAGGGATAATTTAC	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
.CACATGCACAC---------------------------------------------------------------------------------------------------------------------------------ACACACAC..........................................	19	20	0.05	1	0	0	1	0	0	0	0	0	0	0

droPer2

CAATAAACAGAG------------------------------------------------------------------------------------------------------------------------------------------------------CA----------A-AACGCAGTAAACATT	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
No Reads

droAna3

A-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCACT	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
No Reads

droKik1

AGC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAAACACT	Size	Hit Count	Total Norm	Total
No Reads

droEug1

GAAAG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGAGGGTTAAGCTCT	Size	Hit Count	Total Norm	Total
No Reads

droSec2

TATCGG------------------------------------------------------------------------------------------------------------------------------CAGACAAAAA-------------------CAACAACATGAGCATAAGGAGCATAACGTG	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
No Reads

droYak3

AAG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAAT

Size

Hit Count

Total Norm

Total

M026

Head

M043

Female-body

M056

Embryo

V046

Embryo

V052

Head

V058

Head

V120

Male-body

SRR1275488

Male larvae

SRR1275486

Male prepupae

SRR1275484

Male prepupae

GSM1528802

follicle cells

No Reads

dgr_19

scaffold_15081:2051005-2051068 -

Known Ortholog

Canonical miRNA

intergenic

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-34.6	-34.1	-34.0