dgr_180

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------################################################## GCTGCTGCTCATGTTAATAGCGATTTGTATTCCGTAACGGAGTTGTAGGAGTGCGCCTGCTGCGGCGGCGGCGTTGATGTTTTGCGACGTGCCACGAACTGTTCGACGGGCACGAGCACAGCATCAGCGTCGCTGCACGCAGCAGCGGCGGCAGCCTCAGCCAGTACACAGACTCAAGCTCAAGCTCAAGCTCAAGCGCAGCTCAACCAGGCGCCCATACCGCTACCGCCCAAAAAGCATCGCGCACAGCA ********************************************************(((((((((((((((((((((((.(((..((((((.((((...))))...)))))).))).))))))))))))))))).)))))).(((((....)))...))................(((..(((....)))..)))....************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M041 female body	V109 male body
.........................................................................TTGATGTTTTGCGACGTGCCA.............................................................................................................................................................	21	0	1	2.00	2	2	0
........................................................................................................................................................................CAGACTCAAGCTCAAGCT.................................................................	18	0	1	1.00	1	1	0
......................................................................................ACGTGCCACGAACTGTTC...................................................................................................................................................	18	0	1	1.00	1	1	0
..............................................................................................................CACGAGCACAGCATCAGCGTCG.......................................................................................................................	22	0	1	1.00	1	0	1
.............................................................................................................................................................................................GCTCAAGCGCAGCTCAACCAGGCGCC....................................	26	0	1	1.00	1	1	0
..........................................................................................................................................GCAGCAGCGGCGGCAGCCTC.............................................................................................	20	0	1	1.00	1	1	0
...............................................................................................................................................AGCGGCGGCAGCCTCAGCCAGTA.....................................................................................	23	0	1	1.00	1	1	0
..........................................................GCTGCGGCGGCGGCGTTGATG............................................................................................................................................................................	21	0	1	1.00	1	1	0
.......................................................CCTGCTGCGGCGGCGGCGTTGATG............................................................................................................................................................................	24	0	1	1.00	1	1	0
.........................................................................TTGATGTTTTGCGACGTTCCA.............................................................................................................................................................	21	1	1	1.00	1	0	1
.............................................................GCGGCGGCGGCGTTGATGTTTTGC......................................................................................................................................................................	24	0	1	1.00	1	1	0
.........................................................................TTGATGTTTTGCGACGTGAT..............................................................................................................................................................	20	2	2	0.50	1	0	1
...........................................ACTAGGAGTGCGCCTGCGGC............................................................................................................................................................................................	20	3	6	0.17	1	0	1

Species	Coordinate	ID	Alignment
droGri2	scaffold_14853:9936498-9936748 +	dgr_180	GC---------------------TGCTG-------------CTCATGTTAATAGCGATTTGTATTCCGTAACGGAGTTGTAGGAGTGCGCCTGCTGCGGCGGCGGCGTTGATGTTTTGCGACGTGCCACGAACTGTTCGACGGGCACGAGCACAGCATCAGCGTCGCTGCACGCAGCAGCGGCGGCAGCCTCAGCCAGTACACAGA---CTCAAGCTCAAGCTCAAGC------------------TCAAGCGC------A------------GCTCAACCAGGCGCCCATACCGCTACCGCCCAAAAAGCATCGCGCACAGC--------------------------------------A
droVir3	scaffold_12928:5263530-5263771 +	dvi_130	GC---------------------GTCTG-------------GTTATGCCAACAGCGATTTGTATTCTGTGACGGAATTGTAGGAGTGCGCCTGCTGCGGCGGCGGCGTTGATGTGCGGCGT---GCCACGAACTGTTCGACGGGCACGAGCGCAACATCAACGGCGCTGCACGCAGCGGCGGCGGCAGCCTCAGCCAGCACACAGA---------------CACAAAC------------------TCAGACGC------AAA---CG---CAGCTCAGCCAGGCGCCCATACCGCTACCGCCCAAAAAGCATCGCACACAGC--------------------------------------A
droMoj3	scaffold_6359:3777903-3778141 +	dmo_164	GC---------------------TGTGG---GTCA------T-GCCGCCAACAGCGATTTGTATTCTGTGACGGAATTGTAGGAGTGCGCCTGCTGCGGCGGCGGTGTTGATGTTGTGCGGCGTGCCACGAGCTGTTCGACTGGCACGGCCACAGCAGCAACATCGCTGCACGCAGCGGCGGCAGCAGCCTCAGCCAGCACACAGA---------------CACAAGC------------------CCAAGCTC------AAT---CG---C---------AGCCGCCCATTCCGCTGCCACCGAAGAAGCATCGAGCACAGC--------------------------------------A
droWil2	scf2_1100000004909:2562968-2563181 -		GA----------------------GTTGCCCATGGTG----GCGCCAATCATAGTGATTTATATTCTGTTACCGAATTGTAGGAGTGCGCCTGCTGCGGCGGTGGCGTTGATGTAGTGCGTAGG------------------------GGCACCACAACAACGTCACTGCACGCAGCGGCGGCC------ACAGCCAGTACACAGA---------------------C------------------ACAGATGC------CAA---TT---CAA---ACGCAGGCCCCCATACCCCTGCCGCCCAAGAAGCATCGTTCCCAAC--------------------------------------A
dp5	XL_group1a:4975063-4975267 +		CA---------------------TGCCG-------------CCCATGCCAGCAGCGACCTCTACTCCGTGACGGAGTTGTAGGAGTGCGCCTGCTGCGGCGGCGGCGTTGATGTTGTGCGACGG------------------------GGCACATCATCAACGTCGCTGCACGCAGCGGCGGCGGT------AGCCAGCACACAGA---------------------C------------------CCAGACGC------AGC---AG---TCG---GCGCAGGCGCCCATTCCCCTGCCCCCCAAGAAGCACCGCTCGA-GC--------------------------------------C
droPer2	scaffold_11:1564024-1564228 +		CA---------------------TGCCG-------------CCCATGCCAGCAGCGACCTCTACTCCGTGACGGAGTTGTAGGAGTGCGCCTGCTGCGGCGGCGGCGTTGATGTTGTGCGACGG------------------------GGCACATCATCAACGTCGCTGCACGCAGCGGCGGCGGT------AGCCAGCACTCAGA---------------------C------------------CCAGACGC------AGC---AG---TCG---GCGCAGGCGCCCATTCCCCTGCCCCCCAAGAAGCACCGCTCGA-GC--------------------------------------C
droAna3	scaffold_12929:978027-978273 +		GC---------------------TGCAACC-AGTGTGGCAATTAGCAACCACAGCGATCTGTACTCCGTGACGGAGTTGTAGGAGTGCGCCTGCTGCGGCGGCGGTGTGGATGTGGTGCGTCGC------------------------GGCGCCTCATCCACATCGCTGCACGCAGCGGCGGC---------------CACCCAAA---CCCCAGCACAGAGTCAAGG------------------CCAGCAGG------CGGCGCCGGGACAG---CAGCAGGCGCCCATACCCCTGCCACCGAAGAAGAATCGCCGGGAGC---------GAGAAC---------------AGCGGGAAA
droBip1	scf7180000394786:10992-11206 -		GC---------------------TGCCACC-AGTGTGGCAATTAGCAACCATAGCGATCTATATTCTGTAACGGAATTGTAGGAGTGCGCCTGCTGCGGCGGCGGTGTGGATGTGGTGCGTCGC------------------------GGCGCCTCATCCACATCGCTGCACGCAGCGGCGGC---------------CACCCAAA---CCCA------------AGG------------------ACAGCCGG------CGC---CG---GGA---CAGCAGGCGCCCATACCCCTGCCACCGAAAAAGAATCGCAGGGAGC--------------------------------------G
droKik1	scf7180000302469:59425-59673 -		-----------------------TGTTA-------------CAAGCAACCATAGCGATCTTTATTCTGTGACGGAATTGTAGGAATGCGCCTGCTGCGGCGGCGGTGTGGATGTGGTGCGTCGC------------------------GGCGCCTCATCCACAACGCTGCATGCAGCGGCGGCGGC------------CACACAGACAACACAAACA--CA-ACAAAA------------------TCAGACAC------AGA---CT---TCG---GGACAGGCGCCCATACCCCTGCCGCCCAAGAAGCATCGTCAAAGGGAGAGGGAAAGAGAGCAAAGAGAGAGGGAGCAGC-----A
droFic1	scf7180000454072:2002025-2002281 +		GCCGGAGGACTGGGAGGAGGAGCTGCCA-------------TCAGCAACCAAAGCGATCTGTACTCGGTGACGGAATTGTAGGAGTGCGCCTGCTGCGGCGGCGGTGTGGATGTGGTGCGCAGA------------------------GGCGCCTCATCCACATCGCTGCACGCGGCGGCGGCGGC------------CACACAAA---CTCAGAGCCACAACCAAAACCAAACACAGAC------GCAGACGCAAATGCAGT---CG---CAG---AGTCAGGCGCCCGTTCCCCTGCCACCCAAGAAGCACCGCCAGCGGGA--------------------------------------
droEle1	scf7180000491043:339228-339451 +		GC---------------------CACCA-------------CCAGCAACCATAGCGATCTGTATTCGGTGACGGAATTGTAGGAGTGCGCCTGCTGCGGCGGCGGTGTGGATGTGGTGCGCCGA------------------------GGCACTTCATCCACATCGCTGCACGCGGCGGCGGC---------------CACACAAA---CTCAGAG------CCAAAA------------------CCAGGCGC------AAT---CG---CAG---AACCAGGCGCCCGTTCCCCTGCCACCCAAGAAGCATCGCCAAAGGGAAAGGGAGCGCGAGC-----------------------G
droRho1	scf7180000779976:81321-81545 +		GC---------------------TGCTA-------------TCAGCAACCACAGCGATCTGTACTCGGTGACGGAGTTGTAGGAGTGCGCCTGCTGCGGCGGCGGTGTGGATGTGGTGCGCCGA------------------------GGCGCCTCATCCACATCGCTGCACGCGGCGGTGGC---------------CACACAAA---CTCAGAGCCACAACCAAAACCAGACGCAGTCACAACCGCAGTCGC------AAT---CG---CAG---AACCAGGCGCCCGTTCCCCTGCCACCCAAAAAGCATCGC----------------------------------------------
droBia1	scf7180000302069:825464-825678 -		GG------------------ATCTGCCA-------------TTAGCAACCACAGCGATCTGTACTCGGTGACGGAGTTGTAGGAGTGCGCCTGCTGCGGCGGCGGTGTGGATGTTGTGCGCCGA------------------------GGCGCCTCATCCACATCGCTGCACGCGGCGGCGGC---------------CACACAAA---CTCAGAGCCACACCCAAAA------------------CCAGACGC------AAT---CG---CAG---AACCAGGCGCCTATCCCCCTGCCACCCAAAAAGCATCGCCAGC-----------------------------------------G
droTak1	scf7180000413933:64319-64551 +		GC---------------------TGCCA-------------TTAGTAACCACAGCGATCTGTATTCGGTGACGGAGTTGTAGGAGTGCGCCTGCTGCGGCGGCGGTGTGGATGTGGTGCGAAGA------------------------GGCGCTTCATCCACATCGCTGCACGCAGCGGCGGC---------------TACACAAA---CTCAGAGCCACAACCAAAACCCGA---------------CGACGC------AAT---CG---CAG---AATCAGGAGCCTGTCCCCCTGCCACCCAAGAAGCATCGCCAACGTGAAAGAGAACGGGAGC-----------------------G
droEug1	scf7180000408973:234304-234518 +		GC---------------------TGCCA-------------TTAGCAACCACAGCGATTTATACTCGGTGACGGAGTTGTAGGAGTGCGCCTGCTGCGGCGGCGGTGTGGATGTAGTGCGCCGA------------------------GGCGCCTCATCCACATCGCTGCACGCGGCGGCGGC---------------CACACAAA---CTCAAACCCACAACCAAAA------------------CCAAACGC------AAT---CG---CAG---AATCAGGCGCCTGTTCCCCTGCCACCCAAGAAGCATCGCCAGCGGGA--------------------------------------
dm3	chrX:1113571-1113785 -		GC---------------------CGCCA-------------TCAGCAACCAGAGCGATCTGTACTCGGTGACGGAGTTGTAGGAGTGCGCCTGCTGCGGCGGCGGTGTGGATGTGGTGCGCCGA------------------------GGCGCATCGTCCACATCGCTGCACGCGGCGGCGGC---------------TACACAAA---CTCAGACCCACACCCAAAA------------------CCAGACGC------AAT---CG---CAG---AACCAGGCGCCTGTTCCCCTGCCACCCAAGAAGCATCGCCAGCGGGA--------------------------------------
droSim2	x:1002963-1003171 -	dsi_18180	GC---------------------CGCCA-------------TAAGCAACCAGAGCGATCTGTACTCGGTGACGGAGTTGTAGGAGTGCGCCTGCTGCGGCGGCGGTGTGGATGTGGTGCGCCGA------------------------GGCGCATCATCCACATCGCTGCACGCGGCGGCGGC---------------TACACAAA---CTCAGACCCATACCCAAAA------------------CCAGACGC------AAT---CG---CAG---AACCAGGCGCCTGTTCCCCTGCCACCGAAGAAGCATCGCCA--------------------------------------------
droSec2	scaffold_10:947829-948037 -		GC---------------------CGCCA-------------TAAGCAACCAGAGCGATCTGTACTCGGTGACGGAGTTGTAGGAGTGCGCCTGCTGCGGCGGCGGTGTGGATGTGGTGCGCCGA------------------------GGCGCATCATCCACATCGCTGCACGCGGCGGCGGC---------------TACACAAA---CTCAGACAAATACCCAAAA------------------CCAGACGC------AAT---CG---CAG---AACCAGGCGCCTGTTCCCCTGCCACCGAAGAAGCATCGCCA--------------------------------------------
droYak3	X:1028314-1028528 -		GC---------------------CGCCA-------------TTAGCAACCAGAGCGATCTGTACTCGGTGACGGAGTTGTAGGAGTGCGCCTGCTGCGGCGGCGGGGTGGATGTGGTGCGCCGA------------------------GGCGCCTCATCCACATCGCTGCACGCGGCGGCGGC---------------CACACAAA---CTCAGACACACACCCAAAA------------------CCAGACGC------AAT---CG---CAG---AACCAGGCGCCTGTCCCCCTGCCACCCAAGAAGCATCGCCAGCGGGA--------------------------------------
droEre2	scaffold_4644:1098841-1099055 -		GC---------------------AGCCA-------------TTAGCAACCAGAGCGATCTGTACTCGGTAACGGAGTTGTAGGAGTGCGCCTGCTGCGGCGGCGGTGTGGATGTGGTGCGCCGA------------------------GGCGCCTCATCCACATCGCTGCACGCGGCGGCGGC---------------TACCCAAA---CTCAGACACACACCCAAAA------------------CCAGACGC------AAT---CG---CAG---AACCAGGCGCCTGTTCCCCTGCCACCCAAGAAGCATCGCCAGCGGGA--------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droGri2

GC---------------------TGCTG-------------CTCATGTTAATAGCGATTTGTATTCCGTAACGGAGTTGTAGGAGTGCGCCTGCTGCGGCGGCGGCGTTGATGTTTTGCGACGTGCCACGAACTGTTCGACGGGCACGAGCACAGCATCAGCGTCGCTGCACGCAGCAGCGGCGGCAGCCTCAGCCAGTACACAGA---CTCAAGCTCAAGCTCAAGC------------------TCAAGCGC------A------------GCTCAACCAGGCGCCCATACCGCTACCGCCCAAAAAGCATCGCGCACAGC--------------------------------------A	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
...........................................................................................................TTGATGTTTTGCGACGTGCCA..........................................................................................................................................................................................................................................	21	1	2.00	2	2	0
..........................................................................................................................................................................................................CAGA---CTCAAGCTCAAGCT...........................................................................................................................................	18	1	1.00	1	1	0
........................................................................................................................ACGTGCCACGAACTGTTC................................................................................................................................................................................................................................	18	1	1.00	1	1	0
................................................................................................................................................CACGAGCACAGCATCAGCGTCG....................................................................................................................................................................................................	22	1	1.00	1	0	1
..................................................................................................................................................................................................................................GC------------------TCAAGCGC------A------------GCTCAACCAGGCGCC..........................................................................	26	1	1.00	1	1	0
............................................................................................................................................................................GCAGCAGCGGCGGCAGCCTC..........................................................................................................................................................................	20	1	1.00	1	1	0
.................................................................................................................................................................................AGCGGCGGCAGCCTCAGCCAGTA..................................................................................................................................................................	23	1	1.00	1	1	0
............................................................................................GCTGCGGCGGCGGCGTTGATG.........................................................................................................................................................................................................................................................	21	1	1.00	1	1	0
.........................................................................................CCTGCTGCGGCGGCGGCGTTGATG.........................................................................................................................................................................................................................................................	24	1	1.00	1	1	0
...............................................................................................GCGGCGGCGGCGTTGATGTTTTGC...................................................................................................................................................................................................................................................	24	1	1.00	1	1	0
...........................................................................................................TTGATGTTTTGCGACGTGAT...........................................................................................................................................................................................................................................	20	2	0.50	1	0	1

droVir3

GC---------------------GTCTG-------------GTTATGCCAACAGCGATTTGTATTCTGTGACGGAATTGTAGGAGTGCGCCTGCTGCGGCGGCGGCGTTGATGTGCGGCGT---GCCACGAACTGTTCGACGGGCACGAGCGCAACATCAACGGCGCTGCACGCAGCGGCGGCGGCAGCCTCAGCCAGCACACAGA---------------CACAAAC------------------TCAGACGC------AAA---CG---CAGCTCAGCCAGGCGCCCATACCGCTACCGCCCAAAAAGCATCGCACACAGC--------------------------------------A	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
................................................................................................................................................CACGAGCGCAACATCAACGGCGT...................................................................................................................................................................................................	23	1	20.00	20	0	0	1	0	0	0	0	0	0	0	0	0	0	0	3	1	0	1	0	0	0	1	1	0	1	0	2	0	4	2	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0
........................................................................................................GCGTTGATGTGCGGCGT---GCC...........................................................................................................................................................................................................................................	20	1	12.00	12	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	3	0	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0
................................................................................................................................................CACGAGCGCAACATCAACGGCG....................................................................................................................................................................................................	22	1	7.00	7	0	3	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................CACGAGCGCAACATCAACGGCGA...................................................................................................................................................................................................	23	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0
........................................................................................................GCGTTGATGTGCGGCGT---GC............................................................................................................................................................................................................................................	19	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................CACGAGCGCAACATCAACGGC.....................................................................................................................................................................................................	21	1	3.00	3	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................GCGTTGATGTGCGGCGT---GCCA..........................................................................................................................................................................................................................................	21	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
........................TCTG-------------GTTATGCCAACAGCGATTT..............................................................................................................................................................................................................................................................................................................	23	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0
........................................................................................................GCGTTGATGTGCGGCGT---GCCT..........................................................................................................................................................................................................................................	21	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
........................................................................................................GCGTTGATGTGCGGCGT---GCTT..........................................................................................................................................................................................................................................	21	1	2.00	2	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................GCGTTGATGTGCGGCGT---GCCAT.........................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................CACGAGCGCAACATCAACGGCC....................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................GAATTGTAGGAGTGCGCCTG.............................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................ACATCAACGGCGCTGCACGCA...........................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................CACGAGCGCAACATCAACGGCT....................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................GCCACGAACTGTTCGACGG...........................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................CCACGAACTGTTCGACGGGC.........................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................CACGAGCGCAACATCAACGGTT....................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................GCGTTGATGTGCGGCGT---GA............................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................CACGAGCGCAACATCAACGG......................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
.................................................................................................................................GAACTGTTCGACGGGCACGAGCGC.................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................GTGCGGCGT---GCCACGAACT....................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................CGCCCAAAAAGCATCGCACACAGC--------------------------------------.	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................GCGTTGATGTGCGGCGT---GCCACG........................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................AACATCAACGGCGCTGCACGCAG..........................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
.......................................................................................CGCCTGCTGCGGCGGCGGCGTTG............................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................AAA---CG---CAGCTCAGCCAGG..............................................................................	18	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................CGTTGATGTGCGGCGT---GCCAC.........................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................GCGTTGATGTGCGGCGT---TT............................................................................................................................................................................................................................................	19	2	1.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................CACGAGCGCAACATCAACGGCGTCT.................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................CACGAGCGCAACATCAACGGCCT...................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................GCGTTGATGTGCGGCGT---GCCAC.........................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................GACGGAATTGTAGGAGTGCGC................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................CACGAGCGCAACATCAACGGCGTC..................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
...................................................................GTGACGGAATTGTAGGAGTGC..................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................GCGTTGATGTGCGGCGT---GCT...........................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................GCGTTGATGTGCGGCGT---GCCTTT........................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................GCAGCGGCGGCGGCAGC.............................................................................................................................................................................	17	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0

droMoj3

GC---------------------TGTGG---GTCA------T-GCCGCCAACAGCGATTTGTATTCTGTGACGGAATTGTAGGAGTGCGCCTGCTGCGGCGGCGGTGTTGATGTTGTGCGGCGTGCCACGAGCTGTTCGACTGGCACGGCCACAGCAGCAACATCGCTGCACGCAGCGGCGGCAGCAGCCTCAGCCAGCACACAGA---------------CACAAGC------------------CCAAGCTC------AAT---CG---C---------AGCCGCCCATTCCGCTGCCACCGAAGAAGCATCGAGCACAGC--------------------------------------A	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
.........................................................................................................TGTTGATGTTGTGCGGCGTGC............................................................................................................................................................................................................................................	21	1	12.00	12	2	0	6	1	1	2
.........................................................................................................TGTTGATGTTGTGCGGCGTGCCA..........................................................................................................................................................................................................................................	23	1	8.00	8	2	1	0	2	0	3
.........................................................................................................TGTTGATGTTGTGCGGCGTGCC...........................................................................................................................................................................................................................................	22	1	8.00	8	3	1	1	2	0	1
.........................................................................................................TGTTGATGTTGTGCGGCGTG.............................................................................................................................................................................................................................................	20	1	8.00	8	1	0	4	3	0	0
...............................................................................................................................................GCACGGCCACAGCAGCAACATC.....................................................................................................................................................................................................	22	1	5.00	5	0	0	0	1	4	0
..................................................................................................GCGGCGGTGTTGATGTTGTG....................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	1	0
..........................................................................................................GTTGATGTTGTGCGGCGTGCCA..........................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0
.........................................................................................................TGTTGATGTTGTGCGGCG...............................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	1	0	0

droWil2

GA----------------------GTTGCCCATGGTG----GCGCCAATCATAGTGATTTATATTCTGTTACCGAATTGTAGGAGTGCGCCTGCTGCGGCGGTGGCGTTGATGTAGTGCGTAGG------------------------GGCACCACAACAACGTCACTGCACGCAGCGGCGGCC------ACAGCCAGTACACAGA---------------------C------------------ACAGATGC------CAA---TT---CAA---ACGCAGGCCCCCATACCCCTGCCGCCCAAGAAGCATCGTTCCCAAC--------------------------------------A	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
..............................................................ATTCTGTTACCGAATTGTAGGAG.....................................................................................................................................................................................................................................................................................	23	1	2.00	2	2	0	0	0	0
...........................................GCCAATCATAGTGATTTATATTCTGT.....................................................................................................................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0
............................................................................................GCTGCGGCGGTGGCGTTGATGTAGTGCG..................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	1	0
...........................................................................ATTGTAGGAGTGCGCCTGCTGCGGCGGTG..................................................................................................................................................................................................................................................................	29	1	1.00	1	0	0	1	0	0
.................................................................CTGTTACCGAATTGTAGGAG.....................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0
.....................................................GTGATTTATATTCTGTTACC.................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0
............................................................................................................TGATGTAGTGCGTAGG------------------------GGCACCA...............................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0
........................................................................................GCCTGCTGCGGCGGTGGCGTTG............................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0
....................................................................................GTGCGCCTGCTGCGGCGGTGGCGTTGATGT........................................................................................................................................................................................................................................................	30	1	1.00	1	0	0	1	0	0
...............................................................................TAGGAGTGCGCCTGCTGCGGC......................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0
..............................................................................GTAGGAGTGCGCCTGCTGCGGCGGTGGCGT..............................................................................................................................................................................................................................................................	30	1	1.00	1	0	0	0	1	0

dp5

CA---------------------TGCCG-------------CCCATGCCAGCAGCGACCTCTACTCCGTGACGGAGTTGTAGGAGTGCGCCTGCTGCGGCGGCGGCGTTGATGTTGTGCGACGG------------------------GGCACATCATCAACGTCGCTGCACGCAGCGGCGGCGGT------AGCCAGCACACAGA---------------------C------------------CCAGACGC------AGC---AG---TCG---GCGCAGGCGCCCATTCCCCTGCCCCCCAAGAAGCACCGCTCGA-GC--------------------------------------C	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
....................................................AGCGACCTCTACTCCGTGACGGAG..............................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0
............................................................................................................................................................................................................GA---------------------C------------------CCAGACGC------AGC---AG---TCG---GC...................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..............................................GCCAGCAGCGACCTCTACT.........................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................ATCATCAACGTCGCTGCACGCAG..........................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	1	0	0
.........................................................................................................................................................................................................................................................................................................GCCCCCCAAGAAGCACCGCTCG...........................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................GCACACAGA---------------------C------------------CCAGACGC------A.....................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................ACATCATCAACGTCGCTGCA...............................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................GA---------------------C------------------CCAGACGC------AGC---AG---TCG---GCGCA................................................................................	24	1	1.00	1	0	0	0	0	0	1	0	0	0	0

droPer2

CA---------------------TGCCG-------------CCCATGCCAGCAGCGACCTCTACTCCGTGACGGAGTTGTAGGAGTGCGCCTGCTGCGGCGGCGGCGTTGATGTTGTGCGACGG------------------------GGCACATCATCAACGTCGCTGCACGCAGCGGCGGCGGT------AGCCAGCACTCAGA---------------------C------------------CCAGACGC------AGC---AG---TCG---GCGCAGGCGCCCATTCCCCTGCCCCCCAAGAAGCACCGCTCGA-GC--------------------------------------C	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
....................................................................................................................................................................................................AGCACTCAGA---------------------C------------------CCAGACGC------AGC---................................................................................................	22	1	1.00	1	0	0	1	0	0	0
............................................................................................................................................................................................................GA---------------------C------------------CCAGACGC------AGC---AG---TCG---GCG..................................................................................	22	1	1.00	1	1	0	0	0	0	0
.........................................................................................................................................................................................................................................................GACGC------AGC---AG---TCG---GCGCAGG..............................................................................	20	1	1.00	1	0	0	1	0	0	0

droAna3

GC---------------------TGCAACC-AGTGTGGCAATTAGCAACCACAGCGATCTGTACTCCGTGACGGAGTTGTAGGAGTGCGCCTGCTGCGGCGGCGGTGTGGATGTGGTGCGTCGC------------------------GGCGCCTCATCCACATCGCTGCACGCAGCGGCGGC---------------CACCCAAA---CCCCAGCACAGAGTCAAGG------------------CCAGCAGG------CGGCGCCGGGACAG---CAGCAGGCGCCCATACCCCTGCCACCGAAGAAGAATCGCCGGGAGC---------GAGAAC---------------AGCGGGAAA	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
......................................................................................................................CGTCGC------------------------GGCGCCTCATCCACATCA....................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0
.....................................................................................................................................................GCGCCTCATCCACATCGCTGCACGCAGC.........................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	1
..........................AACC-AGTGTGGCAATTAGCAACCACAGC...................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	1	0	0	0	0
.......................................................GATCTGTACTCCGTGACGGA...............................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
.........................................................................................CCTGCTGCGGCGGCGGTGTGGATGTG.......................................................................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0
............................................................................................................................................................ATCCACATCGCTGCACGCAGC.........................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	1

droBip1

GC---------------------TGCCACC-AGTGTGGCAATTAGCAACCATAGCGATCTATATTCTGTAACGGAATTGTAGGAGTGCGCCTGCTGCGGCGGCGGTGTGGATGTGGTGCGTCGC------------------------GGCGCCTCATCCACATCGCTGCACGCAGCGGCGGC---------------CACCCAAA---CCCA------------AGG------------------ACAGCCGG------CGC---CG---GGA---CAGCAGGCGCCCATACCCCTGCCACCGAAAAAGAATCGCAGGGAGC--------------------------------------G	Size	Hit Count	Total Norm	Total
No Reads

droKik1

-----------------------TGTTA-------------CAAGCAACCATAGCGATCTTTATTCTGTGACGGAATTGTAGGAATGCGCCTGCTGCGGCGGCGGTGTGGATGTGGTGCGTCGC------------------------GGCGCCTCATCCACAACGCTGCATGCAGCGGCGGCGGC------------CACACAGACAACACAAACA--CA-ACAAAA------------------TCAGACAC------AGA---CT---TCG---GGACAGGCGCCCATACCCCTGCCGCCCAAGAAGCATCGTCAAAGGGAGAGGGAAAGAGAGCAAAGAGAGAGGGAGCAGC-----A	Size	Hit Count	Total Norm	Total
No Reads

droFic1

GCCGGAGGACTGGGAGGAGGAGCTGCCA-------------TCAGCAACCAAAGCGATCTGTACTCGGTGACGGAATTGTAGGAGTGCGCCTGCTGCGGCGGCGGTGTGGATGTGGTGCGCAGA------------------------GGCGCCTCATCCACATCGCTGCACGCGGCGGCGGCGGC------------CACACAAA---CTCAGAGCCACAACCAAAACCAAACACAGAC------GCAGACGCAAATGCAGT---CG---CAG---AGTCAGGCGCCCGTTCCCCTGCCACCCAAGAAGCACCGCCAGCGGGA--------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droEle1

GC---------------------CACCA-------------CCAGCAACCATAGCGATCTGTATTCGGTGACGGAATTGTAGGAGTGCGCCTGCTGCGGCGGCGGTGTGGATGTGGTGCGCCGA------------------------GGCACTTCATCCACATCGCTGCACGCGGCGGCGGC---------------CACACAAA---CTCAGAG------CCAAAA------------------CCAGGCGC------AAT---CG---CAG---AACCAGGCGCCCGTTCCCCTGCCACCCAAGAAGCATCGCCAAAGGGAAAGGGAGCGCGAGC-----------------------G	Size	Hit Count	Total Norm	Total
No Reads

droRho1

GC---------------------TGCTA-------------TCAGCAACCACAGCGATCTGTACTCGGTGACGGAGTTGTAGGAGTGCGCCTGCTGCGGCGGCGGTGTGGATGTGGTGCGCCGA------------------------GGCGCCTCATCCACATCGCTGCACGCGGCGGTGGC---------------CACACAAA---CTCAGAGCCACAACCAAAACCAGACGCAGTCACAACCGCAGTCGC------AAT---CG---CAG---AACCAGGCGCCCGTTCCCCTGCCACCCAAAAAGCATCGC----------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droBia1

GG------------------ATCTGCCA-------------TTAGCAACCACAGCGATCTGTACTCGGTGACGGAGTTGTAGGAGTGCGCCTGCTGCGGCGGCGGTGTGGATGTTGTGCGCCGA------------------------GGCGCCTCATCCACATCGCTGCACGCGGCGGCGGC---------------CACACAAA---CTCAGAGCCACACCCAAAA------------------CCAGACGC------AAT---CG---CAG---AACCAGGCGCCTATCCCCCTGCCACCCAAAAAGCATCGCCAGC-----------------------------------------G	Size	Hit Count	Total Norm	Total
No Reads

droTak1

GC---------------------TGCCA-------------TTAGTAACCACAGCGATCTGTATTCGGTGACGGAGTTGTAGGAGTGCGCCTGCTGCGGCGGCGGTGTGGATGTGGTGCGAAGA------------------------GGCGCTTCATCCACATCGCTGCACGCAGCGGCGGC---------------TACACAAA---CTCAGAGCCACAACCAAAACCCGA---------------CGACGC------AAT---CG---CAG---AATCAGGAGCCTGTCCCCCTGCCACCCAAGAAGCATCGCCAACGTGAAAGAGAACGGGAGC-----------------------G	Size	Hit Count	Total Norm	Total
No Reads

droEug1

GC---------------------TGCCA-------------TTAGCAACCACAGCGATTTATACTCGGTGACGGAGTTGTAGGAGTGCGCCTGCTGCGGCGGCGGTGTGGATGTAGTGCGCCGA------------------------GGCGCCTCATCCACATCGCTGCACGCGGCGGCGGC---------------CACACAAA---CTCAAACCCACAACCAAAA------------------CCAAACGC------AAT---CG---CAG---AATCAGGCGCCTGTTCCCCTGCCACCCAAGAAGCATCGCCAGCGGGA--------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

dm3

GC---------------------CGCCA-------------TCAGCAACCAGAGCGATCTGTACTCGGTGACGGAGTTGTAGGAGTGCGCCTGCTGCGGCGGCGGTGTGGATGTGGTGCGCCGA------------------------GGCGCATCGTCCACATCGCTGCACGCGGCGGCGGC---------------TACACAAA---CTCAGACCCACACCCAAAA------------------CCAGACGC------AAT---CG---CAG---AACCAGGCGCCTGTTCCCCTGCCACCCAAGAAGCATCGCCAGCGGGA--------------------------------------	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
...............................................ACCAGAGCGATCTGTACTCGGTGACGGA...............................................................................................................................................................................................................................................................................................	28	1	7.00	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................ATCGTCCACATCGCTGCACGCGG..........................................................................................................................................................................................	23	1	5.00	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................TACTCGGTGACGGAGTTGTAGGAGTGC..................................................................................................................................................................................................................................................................................	27	1	5.00	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	2	0	0	0	0	0
.............................................................TACTCGGTGACGGAGTTGTAGGAG.....................................................................................................................................................................................................................................................................................	24	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................GCCGA------------------------GGCGCATCGTCCACATC.....................................................................................................................................................................................................	22	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................TACTCGGTGACGGAGTTGTAGGAGT....................................................................................................................................................................................................................................................................................	25	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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................................................................................................CGGCGGCGGTGTGGATGTGGTGCGCC................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
...............................................................CTCGGTGACGGAGTTGTAGGAGTGC..................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................CCGA------------------------GGCGCATCGTCCACATCGC...................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................GCGCCGA------------------------GGCGCATCGTCCACATCGCTG.................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................GACGC------AAT---CG---CAG---AACCA................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................AT---CG---CAG---AACCAGGCGCCTG........................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................GACGGAGTTGTAGGAGTGCGCCTGC............................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................CCTGCCACCCAAGAAGCA..................................................	18	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

GC---------------------CGCCA-------------TAAGCAACCAGAGCGATCTGTACTCGGTGACGGAGTTGTAGGAGTGCGCCTGCTGCGGCGGCGGTGTGGATGTGGTGCGCCGA------------------------GGCGCATCATCCACATCGCTGCACGCGGCGGCGGC---------------TACACAAA---CTCAGACCCATACCCAAAA------------------CCAGACGC------AAT---CG---CAG---AACCAGGCGCCTGTTCCCCTGCCACCGAAGAAGCATCGCCA--------------------------------------------	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
...........................................................................................................................................................................................................................TACCCAAAA------------------CCAGACGC------AAT---CG---CAG---A....................................................................................	26	1	2.00	2	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0
.........................................................................................................................................................................CACGCGGCGGCGGC---------------TACACAAA---CT.......................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................AGCAACCAGAGCGATCTGTACTCGG......................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
...................................................GAGCGATCTGTACTCGGTGAC..................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................AAA------------------CCAGACGC------AAT---CG---CAG---AAC..................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
.............................................................TACTCGGTGACGGAGTTGTAGGAGTGC..................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
...........................................................TGTACTCGGTGACGGAGTTGTAGGAGT....................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
.....................................................................GACGGAGTTGTAGGAGTG...................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................TCTGTACTCGGTGACGGAGTTGTAGGA......................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................CCAAAA------------------CCAGACGC------AAT---CG---CAG---AACC.................................................................................	26	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
.............................................................TACTCGGTGACGGAGTTGTAGGAGTGCA.................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0

droSec2

GC---------------------CGCCA-------------TAAGCAACCAGAGCGATCTGTACTCGGTGACGGAGTTGTAGGAGTGCGCCTGCTGCGGCGGCGGTGTGGATGTGGTGCGCCGA------------------------GGCGCATCATCCACATCGCTGCACGCGGCGGCGGC---------------TACACAAA---CTCAGACAAATACCCAAAA------------------CCAGACGC------AAT---CG---CAG---AACCAGGCGCCTGTTCCCCTGCCACCGAAGAAGCATCGCCA--------------------------------------------	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
...........................................................................................................................................................CATCCACATCGCTGCACGCGGCG........................................................................................................................................................................................	23	1	1.00	1	0	0	1	0

droYak3

GC---------------------CGCCA-------------TTAGCAACCAGAGCGATCTGTACTCGGTGACGGAGTTGTAGGAGTGCGCCTGCTGCGGCGGCGGGGTGGATGTGGTGCGCCGA------------------------GGCGCCTCATCCACATCGCTGCACGCGGCGGCGGC---------------CACACAAA---CTCAGACACACACCCAAAA------------------CCAGACGC------AAT---CG---CAG---AACCAGGCGCCTGTCCCCCTGCCACCCAAGAAGCATCGCCAGCGGGA--------------------------------------	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
............................................................GTACTCGGTGACGGAGTTGTAGGA......................................................................................................................................................................................................................................................................................	24	1	21.00	21	0	0	0	0	0	0	0	0	0	0	21
................................................................TCGGTGACGGAGTTGTAGGAGTGCGCC...............................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
...........................A-------------TTAGCAACCAGAGCGATCTG.............................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..............................................................................................................................................................CCACATCGCTGCACGCGGCGGC......................................................................................................................................................................................	22	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0
..............................................AACCAGAGCGATCTGTACTCGGT.....................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................GCGCCTCATCCACATCGCTGCAC..............................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
..............................................................ACTCGGTGACGGAGTTGTAGGAGT....................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0

droEre2

GC---------------------AGCCA-------------TTAGCAACCAGAGCGATCTGTACTCGGTAACGGAGTTGTAGGAGTGCGCCTGCTGCGGCGGCGGTGTGGATGTGGTGCGCCGA------------------------GGCGCCTCATCCACATCGCTGCACGCGGCGGCGGC---------------TACCCAAA---CTCAGACACACACCCAAAA------------------CCAGACGC------AAT---CG---CAG---AACCAGGCGCCTGTTCCCCTGCCACCCAAGAAGCATCGCCAGCGGGA--------------------------------------	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
..........................................................................................................................................................TCATCCACATCGCTGCACGCGG..........................................................................................................................................................................................	22	1	2.00	2	0	0	0	0	0	2	0
.........................................TTAGCAACCAGAGCGATCTG.............................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0	0
............................................................................................GCTGCGGCGGCGGTGTGGATGTG.......................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	1	0	0
.................................................................................................................................................................................................................................................................................G---AACCAGGCGCCTGTTCCCCTGC...............................................................	23	1	1.00	1	0	1	0	0	0	0	0
.........................................................TCTGTACTCGGTAACGGAGT.............................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	1	0	0	0
..............................................................................................................................................................CCACATCGCTGCACGCGGCG........................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	1	0
..............................................AACCAGAGCGATCTGTACTCGGT.....................................................................................................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................TGTTCCCCTGCCACCCAAGAAGCATCGCC.............................................	29	1	1.00	1	1	0	0	0	0	0	0

dgr_180

scaffold_14853:9936548-9936698 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-71.0	-70.8	-70.8