ID:

dgr_172

 Coordinate:

scaffold_14853:7860292-7860442 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-13.3 -13.3 -13.1 -13.1

Flybase annnotation

CDS [Dgri\GH24848-cds]; exon [dgri_GLEANR_9471:6]; intron [Dgri\GH24848-in]

Repeatable elements

NameClassFamilyStrand
TART_DVLINEJockey+
mature
  1. scaffold_10026:2250-2267 +
  2. scaffold_14830:449793-449810 -
  3. scaffold_14830:4963891-4963908 -
  4. dgr_172  scaffold_14853:7860352-7860369 +
  5. dgr_174  scaffold_14853:7987883-7987900 +
  6. scaffold_15081:1957757-1957774 -
  7. scaffold_15110:270007-270024 -
  8. scaffold_15110:1152678-1152695 +
  9. scaffold_15110:9283966-9283983 +
  10. scaffold_15245:9090853-9090870 -
star

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
TCGGTGGCGTCCAGTCGACCAAGTTATTCAGCGGCGTCAACAGCTAACAACAGTGATAAACAACAACAACAGCAAGAACAACATCAACAACAGCAAGAACAACATCAACAACAGCAGCAGCAAGAACATCAATAACAACTAACAGCAATTAGAAGTCGTATTGCTCTTAATAGTTGAGAGCTATTAATTGTTTGAAATGAGTTTGCTACGTGCCAAAAATGGTGGCGCTGCCGGCGGCAACGATGGGCGTG
**************************************************........................................................................................((........(((((.........(((((((.....))))))).........)))))....))************************************************** 		Read size # Mismatch Hit Count Total Norm Total M041
female body
....................................................................................................................................................................................................ATGAGTTTGCTACGTGCCAAAA................................. 22 0 1 1.00 1 1
..............................................................................................................ACAGCAGCAGCAAGAACA........................................................................................................................... 18 0 10 0.20 2 2
.............................................................................................................AACAGCAGCAGCAAGAACA........................................................................................................................... 19 0 10 0.10 1 1
....................................................................................................AACATCAACAACAGCAGCA.................................................................................................................................... 19 0 20 0.05 1 1

Anti-sense strand reads

AGCCACCGCAGGTCAGCTGGTTCAATAAGTCGCCGCAGTTGTCGATTGTTGTCACTATTTGTTGTTGTTGTCGTTCTTGTTGTAGTTGTTGTCGTTCTTGTTGTAGTTGTTGTCGTCGTCGTTCTTGTAGTTATTGTTGATTGTCGTTAATCTTCAGCATAACGAGAATTATCAACTCTCGATAATTAACAAACTTTACTCAAACGATGCACGGTTTTTACCACCGCGACGGCCGCCGTTGCTACCCGCAC
**************************************************........................................................................................((........(((((.........(((((((.....))))))).........)))))....))************************************************** 		Read size # Mismatch Hit Count Total Norm Total M041
female body
...........................................................................................................................................................................................................................ACCACCTCTACGGCCCCCGTT........... 21 3 1 1.00 1 1
.....................................................................................................................................................................................................................GTTTTTACCACCTCTACGGCCC................ 22 3 1 1.00 1 1
.........................................................................................................................................................................................................................TTACCACCTCTACGGCCCC............... 19 3 20 0.95 19 19
.......................................................................................................................................................................................................................TTTTACCACCTCTACGGCCCC............... 21 3 2 0.50 1 1
.......................................................................................................................................................................................................................TTTTACCACCTCTACGGCCC................ 20 3 6 0.33 2 2
........................................................................................................................................................................................................................TTTACCACCTCTACGGCCCC............... 20 3 7 0.14 1 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droGri2 scaffold_14853:7860242-7860492 + dgr_172 TCGGTGGCGTCC----------------AGTCGACCAAGTTATTCAGCGGC---GT---------------CAACAG-CT-----A---------------------A----CAACAGTGATAAACAACAACAACAGCAAGAACA---------------------A---CA--------------------------------------------------------------------------------------------TCAACAAC------------AGCAAGAAC---------------AACATC-------AACAACAGC-----------------------------------AGCAGCAAGAACATCAAT----AA-------------------------------------CAACT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACAGCAATTA-------------------------GAA---------------------------GT--CGTATTGCTCTTAATAGTTGAGAG-------------------CT------------------------------------ATTAATTGTTTGAAATGAGTTTGCTACGTGCCAAAAATGGTGGCGCTGCCGGCGGCAACG---ATGGGCGTG
droVir3 scaffold_12932:2026606-2026839 - GCG---CC---C----------------AGTTG--GAAATTAGTTAG--------------TGCACAGCAGC---A-------------------------------G-CAGCAAGAG-------------------------CA---------------------GCAGCAACAACAGCAACATCAGCA--------------------------------------------------------ACATCA---------GC---------------AACATCAGCA-------------------------------------GCA-----GC------------------------------AGCAA------C---AAG----AA--------CAACAG--------------CACCCA--------------------CA-------------------------------------------AAAGATGCAATCGAT----ACGTCGTTTGGTTCTGTTTGGACT-------TTTGGCCGTGTTGAGCGTCT---GCTCCTTTGCCAAGCCC---CATGG------------------------------------------------------CT------GG--A---GC---AG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGCGGTGGCGGCGGCAGCG---GC----TGG
droMoj3 scaffold_6680:8202930-8203158 + CAA-----------------------------------------CAAT------AG---------------CAACAG-CTGA---G----------------------ACAACAATAACAAT-------------------------AACA--------AAC---------------AACAGCAA-----------------------------------CAACA------GCAAAAGCA------AC---------A------GCAACAGC------------AGCAACAACGAC---------------AG-------------C--------AACA---------------------ATCGCAGCAG------------------------------CAA----------------------CTACATTGACATGAA---CA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTTTAACAGCAACAG--------------------------CAACAACA---------------------------AC--AACATTGCG--------TTAATATAC--------------------------------------------GCA-----------AATTGCTTGACACAATTT--TTATTTGCCA-----GTGGGCGTTATGCGTTGGGGTG---GTGGGCGTG
droWil2 scf2_1100000004590:4501662-4501894 - TCA---AG---T----------------GGATC--AGGATCAGCAGGCGGC---GTCAACATCCACATCGGC---A-------------------------------G----CGGCATCGA-CG---------------------------------T---C------AACA---------GC------------------AG-----------------CAGCA------GCAACAAC------------------ATCAACAACAGC---------------AGCAGCAGCAACA---------------T-------------C-----------AACAGCAGAGACAACAACAAC------------------------------AA-------------------------------------------------------TTATTGCCAGCA-------------------------------------------AT----TCATCATC----ATTGTTTAAGCTAC---CAA--------TTAAACAAACT---GGAGCT-----------------------------------------ATA-----------------------------CCAAAAAGCATTA---GT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCGATGCCAGTGCCGATA---AGGATAATG
dp5 XR_group6:12967383-12967587 + GCA---AC----------------------------------------------TT---------------CAAC---------------------------------GCAACAAAAACGACAAGCAGCAACAA------------------------------------CAAC---AACAAC--------------------AACAACAACTGGTTGAACATC---------------------------------ATCAAC---------------------AAC---AAC------------------AA----------CAAC--------------------------------------AACAA------C------------AA-------------------------------------------------------TAAATGACAACAGATTTACGGTCTCCAAAAGTCTAATTAGCGATAA---------AGACTCCTCTAAT-------------ATTTGTC---------------------------------------------------------------------ACTTGAGA-----------------------------CC------GAAAA---AT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGCAGCAGCAGCAGCAACA---GCGATTGTG
droPer2 scaffold_7:175821-175983 + ATC-----------------------------------------CAACAGC---AG---------------CAGCA----GC---A---------------------A----CAACAGCTC----------------------CA---------------------T---CAGCAACAGCAGC--------------------AACAAATACTATTGCAGCAAC---------------------------------AGCAAC---------------------AAC---------------------AGCAA----------CAGC--------------------------------------AGCAA------CAACAA-CAGC--AGCAGCAGCAGCAATTCTACG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTCAGCAATCG--------------------------CAT-----------------------------------------TCAAATT-------------------------------------------------------CACATTCAAGTTCCATTAG--------------TT---------------------------------------------------
droAna3 scaffold_13117:5773622-5773831 + AAT-----------------------------------------GAGC------CA---------------CTGCA----AC---A---------------------A----CAACAACAA----------------------CA---------------------A---CAAC---AACAAC------------------AA-----------------CAATA------ATAATAATA------AG---------A---AC---AAC---------AAG---AACAAGAACAAGA---------------A-------------C-----------GATAACTGAAACAACAAGAA---GTAG----------------------AA--------CAACAA-----------------CAA--------------------CA--------------------------------------------------------AA----------------------------------------------------------------------------------------ACTTCGGAATGACCTTGACACTGGGAAAAGTAACTGTAAAAGAAAAATGCCAAAGAACTTTG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGTATGGCGGCGGCAGCG---GCAGCGGCG
droBip1 scf7180000396437:4168-4360 - CAG-----------------------------------------AAGC------GG---------------CAACG----GC---A---------------------A----CAACATCAC-GAGCAGCAGCGG---------------------------C---------AAC---AGCAA--------------------------------------CAA---------------C------------------ATCACG------AGC---------AGCAGC---GGC---------------AACAGC-------AACAACATCA--------------------------G---------GAGTAGCAGCGGCAAC----GG--------CAAC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACATTAATTA-------------------------------------------------------------------------------GAAA---TTAGTCCTCGGCAAGTTTCGTTTTTATTTTTATATATAAACACTTGAATTT-------AGTTTTTGAACTTAATTT--------------------------------------------------
droKik1 scf7180000302391:1582317-1582522 - AAG-----------------------------------------TTGT-TCTTCAC---------------C--AA--------------------------------ACAACAACAACAAC-------------------------TACA--------AATGGATA---TA-----------------------------------------------GCAACAGCAGCAA------CA------------------------TCAGCAGCAGCAGCAGCAACACC---------------------AGGA-------------GTA--------------------------------------GCAG------C---------------------AACAA-------CAACAAGCACTAGCAACAACCAGCAAC-AATGACAGAAAATGGCAGTGTA--------------AAAC-----------------------TT----TTTTAGTG----ATAGCCATAGATATTACCAA--------TGGG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTACT--------------------------GTGGCTGCC---A-----AAA
droFic1 scf7180000454065:2484269-2484508 - TCG---GCGGCA----------------AATGAAC-------------------------GAGCCTATTAAC---G--------------------------------GCAACAAGGACGAC-------------------------AGCA--------AATGATTA---CA-----------------------------------------------GCAACAGCAACAA------CCACAAGAACAACAGC------------------------AACAACAGC---AGC---------------A----------------GCA--------------------------------------GCAG------C----------AG--------CAGTAA-----------------------C-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATCGGGCAATGGGGAAGGGGGGCCCAAAGCTGCGTCGAGCTCTTAA---TTAAGAA-------------------CTCATGTTAATTGTAATTATTTGGCACATGAAATTTTTATTAA--------------TAT--------------A---TGCCGCTGGCAGCGGCAACA---AA-----GG
droEle1 scf7180000491249:1520492-1520727 - TCG---ACCCCATTGCTCAGTCCCCTGGAGATA--AAAACTGAGAAGC------AT------------CAGC---A--------------------------------GCAGCAAAAGCGAC-------------------------A------------------G---CAGCAACAGCAGCAGCAACAC-----------------------------CAGCA------GCAACAGCA------AT---------A---CC---AGC---------AGC---------AACACTA---------------T-CAGCAACATTATCAGCAGC--AGC------------------A---CTTGTA------------------------------CCAGCATCATCC---------------------------------------------------------------------------------------CA-----------GTTTGTC----GCTGCCTGGCTTGCCACCCG--------C------------------------------TGTCGAGA------------------------------------------------------TG------GTGGA---GT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCAACTGCAACAGCAACA---GCAGCAGCA
droRho1 scf7180000777034:261090-261328 + GGC--GGCGGCA----------------AATGAAC-------------------------GAGCCTATTAAC---G--------------------------------GCAACAAGGACGAC-------------------------AGCA--------AATGATTA---CA-----------------------------------------------GCAACAGCAACAA------CCACAACAGCAACAGC------------------------AACATCACC-------------------------------------AGCA-----GC------------------------------AGCAG------C---AGT----AG--------CAGCAT-----------------------C-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATCAGGTAATGG---AGGGGG--CCAAAGCTGCGTCGAGCTCTTAA---TTAAGAA-------------------CTCATGTTAATTGTAATTATTTGGCACATGAAATTTTTATTAA--------------TTT--------------A---TGCCGCTGGCAGCGGCAACA---AA-----GG
droBia1 scf7180000302422:4566908-4567130 + CAG-----------------------------------------CAGT------AG---------------CAGCA----GCAACAACAGATGTTGCTACCGCAACA-GCAGCAAGAGCAAT-G---------------------------------T---C------AACAGCAA--------------------------------------------CAG---------------C------------------AGT------------------------AGAAGCAGCAACAGCAATAGTTGCAACACC-------AACAGCAGCAAC--ATCA---------------------ATAGCAGCAA------CAGCAA-CATC--AGTAGAAGCAGCAACATCGTG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCTGCAACAG--------------------------CAACAGAA---------------------------AA--AGCTTTGCTCCTGACA----AAATGT------------------------------------------------------------------------------------------------GGCAACGCT-GTGGCAACA---A-------T
droTak1 scf7180000415377:45160-45408 + CAG-----------------------------------------CAAC------AG---------------CAACA--------------------------------------GCAG-------------------------CAGCAGCAACATCTCATGG------------------AGC------------------AG-----------------CAACA------CCTGCAACA---------GCA---------ACAACAAC---------------AGCAGCAGCAGCA---------------G-------------C-----------GATTGCAGACGCAACAACAGC------AGCAG---------------------------CAA-----------------CACCAG--------------------CA--------------------------------------------------------AT------ATCACT----AT------------------------------------------------GCAATGCCC---C----------------------------ACCAGCAAC------------------------------------------AGCAGCAGCAACAG---CAGCAAC-----------------------ATC-----------------------------------------------AGAGAGTTGTTAG--------------CGATTTTGCC-----------------GAGAGTTTCAAGAG--------------C------------GTAAATGCTGCTGCT-GCGGCGGCCGCGTTGGTGGCCACG
droEug1 scf7180000405371:5506-5659 - AAC-----------------------------------------AAAT------AA---------------TAAAGAGACAA---A----------------------ACACCAACAATAAT-------------------ACCA---------------------A---CA------GCAAC------AC-----------------------------CAACA------ACAACAACA------AC---------A---AC---AAC---------AAC---AACACCAA----------------------------------CA-----AC------------------------------AACAA------C---AAC----C------------------------------------------G---------------AA-----------------------CAGAAATCTGACTCATAATAATTACATT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGAAACCC--------------------------------------------ATC-----------AA------------------CTCCCTGCC---------------------------A---T-----AAA
dm3 chrX:4789568-4789721 + CAG-----------------------------------------CAGC------AA--------------------------------------------------------CACCAGCAG----------------------CA---------------------G---CAGCAACAGCAGC--------------------A---------------------------------------------GCAGCAACATCAGC---------------------AGC---------------------AGCAG----------CAGC--------------------------------------AGCAA------CAACAA-CGGC--AGCGCAAGCGGCAGG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCTGGTGCTCCTGTTTCAGTTCGACG-----------------------------CC------AGGAG---GT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGCCATGCCGGCGGTGGCG---TTGGCGGTG
droSim2 x:8909523-8909690 + AAC-----------------------------------------AAGA-AC---GA---------------CACGA----GC---A---------------------A----CAACATCAG-CA---G---------------------C------------------AGCA---ACTGTAGC--------------------A---------------GCAACAT------------C------------------AGCAGCAGCAGCAGCAGCAGC---AACTGC---AAC---------------AGCA---------------------------------------------A---------CTG------C----------AG--------CAGCAA-------CATCAAGCGCAATCAGCAAATTGCATTAAATGACTTTGTATTGCAATTGT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGCTCTCCCAGTG---------------ATA
droSec2 scaffold_3:6633037-6633211 + ACA---AC-------------------------------------AGC------AG---------------CAACA-----------------------------------ACAACAACAA-------------------------------------------------CAACAACAGCAGCAGCAACA-----------------------------------------G------CCTAA------------------GC------------------AACAAC---AAT---------------AACAAT-------AACAACAATAAT--GCTG---------------------AGAGC---AG------------------------------TAA----------------------TCACAACAAGATAAGCAGCTATTTATCG--------------------------------------------------------------------------------------------------------------------------------------------------CCCAATCAAAC-----------------------------------GAGCGCCGCGTGCAACAACAGCAGCAACAG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAATA---GCA---AC-----AA
droYak3 3L:10175689-10175873 - CGA-----------------------------------------CAAT------AA---------------CAGCA----GC---A---------------------A----CAACATCTA-CA---A---------------CA---------------------A---CAGC---AACAGCAGCAACATCTAC-----------------------AACA------------------------AC---------A---------GC---------AGC---ATC---------------------TGCGA----------CAGCA-----------------------ACAACAACAATTGC-----------------------------------------------------------------------------------------TGCG-------------------------------------------GT----TGTTTGCC----ATTGCCATAGCCGCTGGCTG--------TTGGTCGTGCTGAT-----------------TGTCATGA------------------------------------------------------CT------AAAAA---G--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCACCACCAATGGCAACA---ACAGCAGCA
droEre2 scaffold_4784:10850819-10851014 - AAG-----------------------------------------AACT------CG---------------CAGCA----GC---A---------------------A----CGGCAGCAG----------------------CA---------------------G---CAGC---AACAGCAGCAACACTCAAAGCAGC--A---------------ACAA---------------C------------------ATT------------------------AGCAACAGCAACA---------------C-CAAAGCCAGCAGCAGCAAC--AAC------------------A---CTTGCAGCAA------C----------AG--------CAGC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACATCAACAACAAATGTTGAGATTACGTTG--AAAGTAACTGCCAACGG---G--------------------------------------------------------------------------------------------------------------------GG-------------------CAGCGACGCCGGCAGAAGCA---GC-----GG

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droGri2
TCGGTGGCGTCC----------------AGTCGACCAAGTTATTCAGCGGC---GT---------------CAACAG-CT-----A---------------------A----CAACAGTGATAAACAACAACAACAGCAAGAACA---------------------A---CA--------------------------------------------------------------------------------------------TCAACAAC------------AGCAAGAAC---------------AACATC-------AACAACAGC-----------------------------------AGCAGCAAGAACATCAAT----AA-------------------------------------CAACT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACAGCAATTA-------------------------GAA---------------------------GT--CGTATTGCTCTTAATAGTTGAGAG-------------------CT------------------------------------ATTAATTGTTTGAAATGAGTTTGCTACGTGCCAAAAATGGTGGCGCTGCCGGCGGCAACG---ATGGGCGTGSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAGTTTGCTACGTGCCAAAA....................................2211.00110
.....................................................................................................................................................................................................................................................................................................................................ACAGC-----------------------------------AGCAGCAAGAACA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18100.20220
....................................................................................................................................................................................................................................................................................................................................AACAGC-----------------------------------AGCAGCAAGAACA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19100.10110
....................................................................................................................................................................................................................................................................................................................AACATC-------AACAACAGC-----------------------------------AGCA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.05110
droVir3
GCG---CC---C----------------AGTTG--GAAATTAGTTAG--------------TGCACAGCAGC---A-------------------------------G-CAGCAAGAG-------------------------CA---------------------GCAGCAACAACAGCAACATCAGCA--------------------------------------------------------ACATCA---------GC---------------AACATCAGCA-------------------------------------GCA-----GC------------------------------AGCAA------C---AAG----AA--------CAACAG--------------CACCCA--------------------CA-------------------------------------------AAAGATGCAATCGAT----ACGTCGTTTGGTTCTGTTTGGACT-------TTTGGCCGTGTTGAGCGTCT---GCTCCTTTGCCAAGCCC---CATGG------------------------------------------------------CT------GG--A---GC---AG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGCGGTGGCGGCGGCAGCG---GC----TGGSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCCGTGTTGAGCGTCT---GCT.........................................................................................................................................................................................................................................................................................................................................2112.002000000000200000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGATGCAATCGAT----ACGTCGTTTGGTT.....................................................................................................................................................................................................................................................................................................................................................................................2611.001000000000000001000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGCCC---CATGG------------------------------------------------------CT------GG--A---GC---AG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGCG...........................2511.001000000000000000000000000000000000000000000000000000000000000100
.............................................................................................................................................................................................................................................................................................................................................................................................AG----AA--------CAACAG--------------CACCCA--------------------CA-------------------------------------------AAA..................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000001000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................GC------------------------------AGCAA------C---AAG----AA--------CAACAG--------------CACCC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000000000000000000100000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGCAATCGAT----ACGTCGTTTGGTTCT...................................................................................................................................................................................................................................................................................................................................................................................2711.001000000000000000000000100000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCT---GCTCCTTTGCCAAGCCC---C.......................................................................................................................................................................................................................................................................................................................2211.001010000000000000000000000000000000000000000000000000000000000000
.............................................AG--------------TGCACAGCAGC---A-------------------------------G-CAGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1930.331000000000000000000000000000000000010000000000000000000000000000
...........................................................................................................................................................................AACAACAGCAACATCAGCA--------------------------------------------------------ACATCA---------GC---------------.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2730.331000000000000001000000000000000000000000000000000000000000000000
....................................................................................................................................................................................AACATCAGCA--------------------------------------------------------ACATCA---------GC---------------AACATCAGCA-------------------------------------........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2830.331000000000000000001000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................CA---------GC---------------AACATCAGCA-------------------------------------GCA-----GC------------------------------AG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.255001000000000000000000000000001000000002000000000000000000001000
.....................................................................AGC---A-------------------------------G-CAGCAAGAG-------------------------CA---------------------GCAGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2190.222000000000010000000000000000100000000000000000000000000000000000
.............................................................................................................................................................................................A--------------------------------------------------------ACATCA---------GC---------------AACATCAGCA-------------------------------------GCA-----GC------------------------------................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2450.201001000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................AGCA-------------------------------------GCA-----GC------------------------------AGCAA------C---AAG----AA--------CA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2260.171000000000000000100000000000000000000000000000000000000000000000
..............................................................................................................................................................................AACAGCAACATCAGCA--------------------------------------------------------ACATCA---------G.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2360.171000000000000001000000000000000000000000000000000000000000000000
..................................................................AGCAGC---A-------------------------------G-CAGCAAGAG-------------------------CA---------------------GC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2170.141000000000100000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A---GC---AG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGCGGTGGCGGC...................1880.131000000010000000000000000000000000000000000000000000000000000000
......................................................................GC---A-------------------------------G-CAGCAAGAG-------------------------CA---------------------GCAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1990.111000000000000000000010000000000000000000000000000000000000000000
..................................................................AGCAGC---A-------------------------------G-CAGCAAGAG-------------------------C.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18190.112000000000000010000000000001000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................CA---------GC---------------AACATCAGCA-------------------------------------GCA-----GC------------------------------AGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.102100000000000000000000000000000000000000000000000000000000000010
................................................................................................................CAAGAG-------------------------CA---------------------GCAGCAACAACAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21120.081000000000000000000000000000000000000001000000000000000000000000
...........................................................................A-------------------------------G-CAGCAAGAG-------------------------CA---------------------GCAGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18150.071000000010000000000000000000000000000000000000000000000000000000
..................................................................AGCAGC---A-------------------------------G-CAGCAAGAG-------------------------CA---------------------GCT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.051000000010000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................ACATCAGCA-------------------------------------GCA-----GC------------------------------AGCAA------C---.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.051000000000000000000000000000001000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................AACATCAGCA-------------------------------------GCA-----GC------------------------------AGCA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.051000000000000000000000000000000000010000000000000000000000000000
droMoj3
CAA-----------------------------------------CAAT------AG---------------CAACAG-CTGA---G----------------------ACAACAATAACAAT-------------------------AACA--------AAC---------------AACAGCAA-----------------------------------CAACA------GCAAAAGCA------AC---------A------GCAACAGC------------AGCAACAACGAC---------------AG-------------C--------AACA---------------------ATCGCAGCAG------------------------------CAA----------------------CTACATTGACATGAA---CA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTTTAACAGCAACAG--------------------------CAACAACA---------------------------AC--AACATTGCG--------TTAATATAC--------------------------------------------GCA-----------AATTGCTTGACACAATTT--TTATTTGCCA-----GTGGGCGTTATGCGTTGGGGTG---GTGGGCGTGSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
..........................................................................................................................................................................................................................................AAAGCA------AC---------A------GCAACAGC------------AGCAACA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2450.201100000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGCAACAG--------------------------CAACAACA---------------------------.............................................................................................................................................................18200.051000010
droWil2
TCA---AG---T----------------GGATC--AGGATCAGCAGGCGGC---GTCAACATCCACATCGGC---A-------------------------------G----CGGCATCGA-CG---------------------------------T---C------AACA---------GC------------------AG-----------------CAGCA------GCAACAAC------------------ATCAACAACAGC---------------AGCAGCAGCAACA---------------T-------------C-----------AACAGCAGAGACAACAACAAC------------------------------AA-------------------------------------------------------TTATTGCCAGCA-------------------------------------------AT----TCATCATC----ATTGTTTAAGCTAC---CAA--------TTAAACAAACT---GGAGCT-----------------------------------------ATA-----------------------------CCAAAAAGCATTA---GT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCGATGCCAGTGCCGATA---AGGATAATGSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
............................................................................................................................................................................................................................................................................................AGCAGCAGCAACA---------------T-------------C-----------AACAGCAGA..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00101000
......................................................................................................................................................................................................................................................................................................................................................GCAGAGACAACAACAAC------------------------------AA-------------------------------------------------------TTATTGCC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100001
.................................................................................................................GGCATCGA-CG---------------------------------T---C------AACA---------GC------------------AG-----------------CAGCA------GC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00101000
.................................................................CATCGGC---A-------------------------------G----CGGCATCGA-CG---------------------------------T---............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100100
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CT---GGAGCT-----------------------------------------ATA-----------------------------CCAAAAAGC....................................................................................................................................................................................................................................................2011.00100100
......................................................................................................................................................................................................................................................................................................................................................................................................A-------------------------------------------------------TTATTGCCAGCA-------------------------------------------AT----TCATCATC----A.....................................................................................................................................................................................................................................................................................................................................................................................2411.00101000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTA---GT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTCGATGCCAGTGCC................2111.00100010
......................................................GTCAACATCCACATCGGC---A-------------------------------G----C............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100010
......................................................................................................................CGA-CG---------------------------------T---C------AACA---------GC------------------AG-----------------CAGCA------GC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2220.50100100
....................................................................................................................................................................................................................................................................AACAACAGC---------------AGCAGCAGCA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.25500050
............................................................................................................................................................................................................................................AAC------------------ATCAACAACAGC---------------AGCAGCA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22140.14200020
...........................................................................................................................................................................A---------GC------------------AG-----------------CAGCA------GCAACAAC------------------ATC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.05100010
dp5
GCA---AC----------------------------------------------TT---------------CAAC---------------------------------GCAACAAAAACGACAAGCAGCAACAA------------------------------------CAAC---AACAAC--------------------AACAACAACTGGTTGAACATC---------------------------------ATCAAC---------------------AAC---AAC------------------AA----------CAAC--------------------------------------AACAA------C------------AA-------------------------------------------------------TAAATGACAACAGATTTACGGTCTCCAAAAGTCTAATTAGCGATAA---------AGACTCCTCTAAT-------------ATTTGTC---------------------------------------------------------------------ACTTGAGA-----------------------------CC------GAAAA---AT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGCAGCAGCAGCAGCAACA---GCGATTGTGSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGCAGCAGCAACA---GCG......20200.701401000000130
...............................................................................................................................................................................................................................C---------------------------------ATCAAC---------------------AAC---AAC------------------AA----------CAAC--------------------------------------A...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.3570610000000
...................................................................................................................................................................................................................................................................CAAC---------------------AAC---AAC------------------AA----------CAAC--------------------------------------AACAA------C------------AA-------------------------------------------------------TAA............................................................................................................................................................................................................................................................................................................................................................................................................................................................27130.2330000000300
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAGCAGCAACA---GCGA.....2070.1410000001000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGCAGCAGCAACA---GCGA.....2170.1410000001000
...............................................................................................................................GCAACAA------------------------------------CAAC---AACAAC--------------------AACAACAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.1020200000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAGCAGCAGCAACA---G........19200.0510001000000
..................................................................................................................................................................................................................................................................TCAAC---------------------AAC---AAC------------------AA----------CAAC--------------------------------------A...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.0510100000000
...............................................................................................................................GCAACAA------------------------------------CAAC---AACAAC--------------------AACAAC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.0510100000000
...........................................................................................................................AGCAGCAACAA------------------------------------CAAC---AACAAC--------------------AACAACC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................28200.0510010000000
............................................................................................................................GCAGCAACAA------------------------------------CAAC---AACAAC--------------------AACAACAA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................28200.0510010000000
...............................................................................................................................GCAACAA------------------------------------CAAC---AACAAC--------------------AACA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.0510100000000
.................................................................................................................................................................................................................................................................ATCAAC---------------------AAC---AAC------------------AA----------CAAC--------------------------------------AAC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.0510010000000
.................................................................................................................................AACAA------------------------------------CAAC---AACAAC--------------------AACA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.0510100000000
...........................................................................................................................AGCAGCAACAA------------------------------------CAAC---AACAA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.0510100000000
...........................................................................................................................................................................AAC---AACAAC--------------------AACAACAACTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.0510100000000
.....................................................................................................................................................................................................................................................................AC---------------------AAC---AAC------------------AA----------CAAC--------------------------------------AACAA------C------------AA-------------------------------------------------------T..............................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.0510100000000
.................................................................................................................................................................................................................................................................ATCAAC---------------------AAC---AAC------------------AA----------CAAC--------------------------------------A...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.0510100000000
droPer2
ATC-----------------------------------------CAACAGC---AG---------------CAGCA----GC---A---------------------A----CAACAGCTC----------------------CA---------------------T---CAGCAACAGCAGC--------------------AACAAATACTATTGCAGCAAC---------------------------------AGCAAC---------------------AAC---------------------AGCAA----------CAGC--------------------------------------AGCAA------CAACAA-CAGC--AGCAGCAGCAGCAATTCTACG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTCAGCAATCG--------------------------CAT-----------------------------------------TCAAATT-------------------------------------------------------CACATTCAAGTTCCATTAG--------------TT---------------------------------------------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
....................................................................................................................................................................................................................................................................................................................................AGC--------------------------------------AGCAA------CAACAA-CAGC--AGCAGCAGCA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................28190.051001000
.............................................................................................................................................................................................................................AAC---------------------------------AGCAAC---------------------AAC---------------------AGCAA----------CAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.051010000
.............................................................................................................................................................................................................................................................................................................................................................................AGCAA------CAACAA-CAGC--AGCAGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051001000
................................................................................................................................................................................................................................................................................................................................................................................AA------CAACAA-CAGC--AGCAGCAGCA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.051000100
.........................................................................................................................................................................................................................CAGCAAC---------------------------------AGCAAC---------------------AAC---------------------AGCA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.051000010
droAna3
AAT-----------------------------------------GAGC------CA---------------CTGCA----AC---A---------------------A----CAACAACAA----------------------CA---------------------A---CAAC---AACAAC------------------AA-----------------CAATA------ATAATAATA------AG---------A---AC---AAC---------AAG---AACAAGAACAAGA---------------A-------------C-----------GATAACTGAAACAACAAGAA---GTAG----------------------AA--------CAACAA-----------------CAA--------------------CA--------------------------------------------------------AA----------------------------------------------------------------------------------------ACTTCGGAATGACCTTGACACTGGGAAAAGTAACTGTAAAAGAAAAATGCCAAAGAACTTTG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CGTATGGCGGCGGCAGCG---GCAGCGGCGSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
...........................................................................A----AC---A---------------------A----CAACAACAA----------------------CA---------------------A---CAAC---............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.102020000
.........................................................................GCA----AC---A---------------------A----CAACAACAA----------------------CA---------------------A---C..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.051100000
................................................................................AC---A---------------------A----CAACAACAA----------------------CA---------------------A---CAAC---A...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051010000
.....................................................................................A---------------------A----CAACAACAA----------------------CA---------------------A---CAAC---AACAAC------------------....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.051010000
........................................................................TGCA----AC---A---------------------A----CAACAACAA----------------------CA---------------------A---C..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051010000
.............................................................................................................................................................................................................................................................................................................................................................CAACAAGAA---GTAG----------------------AA--------CACGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.051001000
droBip1
CAG-----------------------------------------AAGC------GG---------------CAACG----GC---A---------------------A----CAACATCAC-GAGCAGCAGCGG---------------------------C---------AAC---AGCAA--------------------------------------CAA---------------C------------------ATCACG------AGC---------AGCAGC---GGC---------------AACAGC-------AACAACATCA--------------------------G---------GAGTAGCAGCGGCAAC----GG--------CAAC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACATTAATTA-------------------------------------------------------------------------------GAAA---TTAGTCCTCGGCAAGTTTCGTTTTTATTTTTATATATAAACACTTGAATTT-------AGTTTTTGAACTTAATTT--------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droKik1
AAG-----------------------------------------TTGT-TCTTCAC---------------C--AA--------------------------------ACAACAACAACAAC-------------------------TACA--------AATGGATA---TA-----------------------------------------------GCAACAGCAGCAA------CA------------------------TCAGCAGCAGCAGCAGCAACACC---------------------AGGA-------------GTA--------------------------------------GCAG------C---------------------AACAA-------CAACAAGCACTAGCAACAACCAGCAAC-AATGACAGAAAATGGCAGTGTA--------------AAAC-----------------------TT----TTTTAGTG----ATAGCCATAGATATTACCAA--------TGGG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCTACT--------------------------GTGGCTGCC---A-----AAASizeHit CountTotal NormTotal
No Reads
droFic1
TCG---GCGGCA----------------AATGAAC-------------------------GAGCCTATTAAC---G--------------------------------GCAACAAGGACGAC-------------------------AGCA--------AATGATTA---CA-----------------------------------------------GCAACAGCAACAA------CCACAAGAACAACAGC------------------------AACAACAGC---AGC---------------A----------------GCA--------------------------------------GCAG------C----------AG--------CAGTAA-----------------------C-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATCGGGCAATGGGGAAGGGGGGCCCAAAGCTGCGTCGAGCTCTTAA---TTAAGAA-------------------CTCATGTTAATTGTAATTATTTGGCACATGAAATTTTTATTAA--------------TAT--------------A---TGCCGCTGGCAGCGGCAACA---AA-----GGSizeHit CountTotal NormTotal
No Reads
droEle1
TCG---ACCCCATTGCTCAGTCCCCTGGAGATA--AAAACTGAGAAGC------AT------------CAGC---A--------------------------------GCAGCAAAAGCGAC-------------------------A------------------G---CAGCAACAGCAGCAGCAACAC-----------------------------CAGCA------GCAACAGCA------AT---------A---CC---AGC---------AGC---------AACACTA---------------T-CAGCAACATTATCAGCAGC--AGC------------------A---CTTGTA------------------------------CCAGCATCATCC---------------------------------------------------------------------------------------CA-----------GTTTGTC----GCTGCCTGGCTTGCCACCCG--------C------------------------------TGTCGAGA------------------------------------------------------TG------GTGGA---GT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCAACTGCAACAGCAACA---GCAGCAGCASizeHit CountTotal NormTotal
No Reads
droRho1
GGC--GGCGGCA----------------AATGAAC-------------------------GAGCCTATTAAC---G--------------------------------GCAACAAGGACGAC-------------------------AGCA--------AATGATTA---CA-----------------------------------------------GCAACAGCAACAA------CCACAACAGCAACAGC------------------------AACATCACC-------------------------------------AGCA-----GC------------------------------AGCAG------C---AGT----AG--------CAGCAT-----------------------C-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATCAGGTAATGG---AGGGGG--CCAAAGCTGCGTCGAGCTCTTAA---TTAAGAA-------------------CTCATGTTAATTGTAATTATTTGGCACATGAAATTTTTATTAA--------------TTT--------------A---TGCCGCTGGCAGCGGCAACA---AA-----GGSizeHit CountTotal NormTotal
No Reads
droBia1
CAG-----------------------------------------CAGT------AG---------------CAGCA----GCAACAACAGATGTTGCTACCGCAACA-GCAGCAAGAGCAAT-G---------------------------------T---C------AACAGCAA--------------------------------------------CAG---------------C------------------AGT------------------------AGAAGCAGCAACAGCAATAGTTGCAACACC-------AACAGCAGCAAC--ATCA---------------------ATAGCAGCAA------CAGCAA-CATC--AGTAGAAGCAGCAACATCGTG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGCTGCAACAG--------------------------CAACAGAA---------------------------AA--AGCTTTGCTCCTGACA----AAATGT------------------------------------------------------------------------------------------------GGCAACGCT-GTGGCAACA---A-------TSizeHit CountTotal NormTotal
No Reads
droTak1
CAG-----------------------------------------CAAC------AG---------------CAACA--------------------------------------GCAG-------------------------CAGCAGCAACATCTCATGG------------------AGC------------------AG-----------------CAACA------CCTGCAACA---------GCA---------ACAACAAC---------------AGCAGCAGCAGCA---------------G-------------C-----------GATTGCAGACGCAACAACAGC------AGCAG---------------------------CAA-----------------CACCAG--------------------CA--------------------------------------------------------AT------ATCACT----AT------------------------------------------------GCAATGCCC---C----------------------------ACCAGCAAC------------------------------------------AGCAGCAGCAACAG---CAGCAAC-----------------------ATC-----------------------------------------------AGAGAGTTGTTAG--------------CGATTTTGCC-----------------GAGAGTTTCAAGAG--------------C------------GTAAATGCTGCTGCT-GCGGCGGCCGCGTTGGTGGCCACGSizeHit CountTotal NormTotal
No Reads
droEug1
AAC-----------------------------------------AAAT------AA---------------TAAAGAGACAA---A----------------------ACACCAACAATAAT-------------------ACCA---------------------A---CA------GCAAC------AC-----------------------------CAACA------ACAACAACA------AC---------A---AC---AAC---------AAC---AACACCAA----------------------------------CA-----AC------------------------------AACAA------C---AAC----C------------------------------------------G---------------AA-----------------------CAGAAATCTGACTCATAATAATTACATT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGAAACCC--------------------------------------------ATC-----------AA------------------CTCCCTGCC---------------------------A---T-----AAASizeHit CountTotal NormTotal
No Reads
dm3
CAG-----------------------------------------CAGC------AA--------------------------------------------------------CACCAGCAG----------------------CA---------------------G---CAGCAACAGCAGC--------------------A---------------------------------------------GCAGCAACATCAGC---------------------AGC---------------------AGCAG----------CAGC--------------------------------------AGCAA------CAACAA-CGGC--AGCGCAAGCGGCAGG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCTGGTGCTCCTGTTTCAGTTCGACG-----------------------------CC------AGGAG---GT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GGCCATGCCGGCGGTGGCG---TTGGCGGTGSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGCCGGCGGTGGCG---TTGG.....1911.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................GCAAGCGGCAGG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCTGGT..............................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................CAGCAACATCAGC---------------------AGC---------------------AGCAG----------CAGC--------------------------------------A...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26150.5380000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000050000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
..........................................................................................................................................................................CAGCAACAGCAGC--------------------A---------------------------------------------GCAGCA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.3570000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000040000
.........................................................................................................................................................................................................................................................GCAGCAACATCAGC---------------------AGC---------------------AGCAG----------CAGC--------------------------------------AG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2860.3320000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000
..................................................................................................................................................................................GCAGC--------------------A---------------------------------------------GCAGCAACATCAGC---------------------AGC---------------------AGCAG----------CA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................3030.3310000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................AGCAACAGCAGC--------------------A---------------------------------------------GCAGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.3060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000600000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................CAG----------CAGC--------------------------------------AGCAA------CAACAA-CGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21110.2730000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000
........................................................................................................................G----------------------CA---------------------G---CAGCAACAGCAGC--------------------A---------------------------------------------GCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.2550000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005
...........................................................................................................................................................................................................A---------------------------------------------GCAGCAACATCAGC---------------------AGC---------------------AGCAG----------CAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26120.2530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................AGCAG----------------------CA---------------------G---CAGCAACAGCAGC--------------------A---------------------------------------------....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.2040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................AGCAGC--------------------A---------------------------------------------GCAGCAACATCAGC---------------------.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.2040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000040000000000000000000000000000
................................................................................................................................................................................CAGCAGC--------------------A---------------------------------------------GCAGCAACATCAGC---------------------AGC---------------------AG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2760.1710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................AGCAGC--------------------A---------------------------------------------GCAGCAACATCAGC---------------------AGC---------------------.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24130.1520000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.......................................................................................................................AG----------------------CA---------------------G---CAGCAACAGCAGC--------------------A---------------------------------------------....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000
...........................................................................................................................................................................................................A---------------------------------------------GCAGCAACATCAGC---------------------AGC---------------------A........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................GCAACATCAGC---------------------AGC---------------------AGCAG----------..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000
..........................................................................................................................................................................................................................................................CAGCAACATCAGC---------------------AGC---------------------AGCAG----------CA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000100000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................CAG----------------------CA---------------------G---CAGCAACAGCAGC--------------------A---------------------------------------------....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000
.....................................................................................................................GCAG----------------------CA---------------------G---CAGCAACAGCAGC--------------------A---------------------------------------------G...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000100000000000000000000000
....................................................................................................................................................................................AGC--------------------A---------------------------------------------GCAGCAACATCAGC---------------------AGC---------------------.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000020000000000000000000000000000
..................................................................................................................................................................................GCAGC--------------------A---------------------------------------------GCAGCAACATCAGC---------------------AGC---------------------AG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2570.1410000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..........................................................................................................................................................................................................................................................CAGCAACATCAGC---------------------AGC---------------------AGCAG----------CAGC--------------------------------------................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25160.1320000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................AGCAG----------CAGC--------------------------------------AGCAA------CAACAA-CG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2280.1310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................G----------CAGC--------------------------------------AGCAA------CAACAA-CGGC--A.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2180.1310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................AGCAA------CAACAA-CGGC--AGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1880.1310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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droSim2
AAC-----------------------------------------AAGA-AC---GA---------------CACGA----GC---A---------------------A----CAACATCAG-CA---G---------------------C------------------AGCA---ACTGTAGC--------------------A---------------GCAACAT------------C------------------AGCAGCAGCAGCAGCAGCAGC---AACTGC---AAC---------------AGCA---------------------------------------------A---------CTG------C----------AG--------CAGCAA-------CATCAAGCGCAATCAGCAAATTGCATTAAATGACTTTGTATTGCAATTGT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGCTCTCCCAGTG---------------ATASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
...........................................................................................................A----CAACATCAG-CA---G---------------------C------------------AG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................16140.07100000000001000000
.............................................................................................................................................................................................................................................................................................GC---AAC---------------AGCA---------------------------------------------A---------CTG------C----------AG--------CA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.05100010000000000000
.................................................................................................................................................................................................................................................................AGCAGCAGCAGCAGCAGC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.05100000000001000000
......................................................................................................................................................................................................................................................................CAGCAGCAGCAGCAGC---AACTG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.05100100000000000000
..............................................................................................................................................................................................................................ACAT------------C------------------AGCAGCAGCAGCA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.05100000001000000000
droSec2
ACA---AC-------------------------------------AGC------AG---------------CAACA-----------------------------------ACAACAACAA-------------------------------------------------CAACAACAGCAGCAGCAACA-----------------------------------------G------CCTAA------------------GC------------------AACAAC---AAT---------------AACAAT-------AACAACAATAAT--GCTG---------------------AGAGC---AG------------------------------TAA----------------------TCACAACAAGATAAGCAGCTATTTATCG--------------------------------------------------------------------------------------------------------------------------------------------------CCCAATCAAAC-----------------------------------GAGCGCCGCGTGCAACAACAGCAGCAACAG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAATA---GCA---AC-----AASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
..............................................................................................................................................................................AACAGCAGCAGCAACA-----------------------------------------G------CC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19100.1010001
..........................................................................................................................................................................CAACAACAGCAGCAGCAACA-----------------------------------------......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.0510100
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAACAGCAGCAACAG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CA.....................20200.0510010
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAACAGCAGCAACAG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------C......................19200.0510010
...................................................................................................................CAACAA-------------------------------------------------CAACAACAGCAGCAGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.0510001
droYak3
CGA-----------------------------------------CAAT------AA---------------CAGCA----GC---A---------------------A----CAACATCTA-CA---A---------------CA---------------------A---CAGC---AACAGCAGCAACATCTAC-----------------------AACA------------------------AC---------A---------GC---------AGC---ATC---------------------TGCGA----------CAGCA-----------------------ACAACAACAATTGC-----------------------------------------------------------------------------------------TGCG-------------------------------------------GT----TGTTTGCC----ATTGCCATAGCCGCTGGCTG--------TTGGTCGTGCTGAT-----------------TGTCATGA------------------------------------------------------CT------AAAAA---G--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CCACCACCAATGGCAACA---ACAGCAGCASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
No Reads
droEre2
AAG-----------------------------------------AACT------CG---------------CAGCA----GC---A---------------------A----CGGCAGCAG----------------------CA---------------------G---CAGC---AACAGCAGCAACACTCAAAGCAGC--A---------------ACAA---------------C------------------ATT------------------------AGCAACAGCAACA---------------C-CAAAGCCAGCAGCAGCAAC--AAC------------------A---CTTGCAGCAA------C----------AG--------CAGC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACATCAACAACAAATGTTGAGATTACGTTG--AAAGTAACTGCCAACGG---G--------------------------------------------------------------------------------------------------------------------GG-------------------CAGCGACGCCGGCAGAAGCA---GC-----GGSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
No Reads

Generated: 05/17/2015 at 10:05 PM