ID:

dgr_163

 Coordinate:

scaffold_14853:5571755-5571905 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

Flybase annnotation

exon [dgri_GLEANR_8866:3]; CDS [Dgri\GH24215-cds]; intron [Dgri\GH24215-in]

Repeatable elements

NameClassFamilyStrand
(CTG)nSimple_repeatSimple_repeat+

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
CACCAATTAAACAAGGATTGGAAGGAGGATAAGAAAGCTAATTATATCAAGTGAGTAGTGGAGCAGCAGCAGCAACAGCAGCAGCAGCAGCAGCAGCGGCAGCGGCAGTTAGCAGCTATATTCAATTTATATTTAATGTTTTTTATGTTTGAGTTGTTAGTTTTTTTTTTTTTTTTCATAGAGATACGTTTTGCGATTTGAGAGATCTTCTTTAATTCGTATTTCGAATATTTAGGGGCAGTCTTGTTGAG
**************************************************.((((((.(((.(((((.((.((....((.((.((....)).)).))....)).)).))).))..)))))))))..........(((((((((((((...(((.................)))...)))))))).)))))...........************************************************** 		Read size # Mismatch Hit Count Total Norm Total

Anti-sense strand reads

GTGGTTAATTTGTTCCTAACCTTCCTCCTATTCTTTCGATTAATATAGTTCACTCATCACCTCGTCGTCGTCGTTGTCGTCGTCGTCGTCGTCGTCGCCGTCGCCGTCAATCGTCGATATAAGTTAAATATAAATTACAAAAAATACAAACTCAACAATCAAAAAAAAAAAAAAAAGTATCTCTATGCAAAACGCTAAACTCTCTAGAAGAAATTAAGCATAAAGCTTATAAATCCCCGTCAGAACAACTC
**************************************************.((((((.(((.(((((.((.((....((.((.((....)).)).))....)).)).))).))..)))))))))..........(((((((((((((...(((.................)))...)))))))).)))))...........************************************************** 		Read size # Mismatch Hit Count Total Norm Total

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droGri2 scaffold_14853:5571705-5571955 - dgr_163 C-ACCAATTAAACAAGGATTGGAAGGAGGATAAGAAAGCTAATTA-TATCAAG----TGAGT-----AGTGG-AGCAGCAGCA---GCAACA--GCAGCAGCAG------C---AGCAGCAGCGG-------------------------------------------------------------------CAGCGGCAGT------TAGCA----G------------CTATATTCAATTTA-----------------------------------------------------------------------------TAT-----------------------------------------------------------------------------------------TTAATGTTTTTTATGTTTGAGTTGTTA------GTTTTT----------------------------------------------------------------------------------------------TTTT-TTTTTT-----------TCATAG-A---G---------------ATACGTTTTGCGATTTGAGAGATCTTCT---T-----------------------------------TAATT----------CGTA---TTTCGAATATTTAGGGGCAGTCTTGTTGAG
droVir3 scaffold_12875:671212-671368 - ACAGCAACTG-------------------------------------------------AGA-----GCAGC-AGCAGCAGCA---G--------CAGCA---GCGACAGCGGCA-----------------------GCAGC--------------------------------------------AGTGACAGCGCCAGC------AACG----------------AGGACAG--------------------CG-CATCAAAATAGAAGAAAAAGT-TTGCACGC---------------------------------TGTAAAC------------------TT---------------------------------------------------------------------------------------TGTTG------GTTTTT----------------------------------------------------------------------------------------------TTTT-TTTTTT-----------TTGATG-T---G---------------CTGTGTTT------------------------------------------------------------------------------------------------------------TGC
droMoj3 scaffold_6540:9330672-9330923 + G-A--------AGAAGAAATAGAAACAAATTATCTATGCTCATTAGTGTTATG----GCAGC-----AGCAG-AAG-------------------CAGCAGCAG------C---AGCAGCAGCAGCAGCAGCACAGCAGCAG--------------------------------------------------CAGCAGA--------C-GACAACAATTTCTTG---------------ATTCACACGCCTACAACAACAACA-------------------ATTGCC-----CCC--------------------------GT-TTTTGAGGGCAACAATTTTGGTGTTTTTT-TTTTTTTTTTTTT----------------------------TTT-----T----------------------------------------------T---------------------------------------------------------------------------------------------------------------------TTTTG---------------------------------GCTTTAAGGGTCCGCTAAGT-----------------------------------TAATT----------TTCA---ATTTGAAAAAGTGGGGG------------C
droWil2 scf2_1100000004768:1805157-1805296 - G-A--------------------AAGTGGCTAATAAAGCAAATCT-TGTTGA---------CAATGCTC-AA-GGCGACGGCA---A---CA--ACAGCA---G------C---AACAGCAGCAGCA-----------GCAA--------------------------------------------------CATTTG-------------CT----G------------CTCT------------------------------------------------TTTCGATTT----------------------------T-TAT-T----------------T-TGTA-----T-TTGGTTT------------------------------------------------------------------------------TTTTGATTTTTT----------------------------------------------------------------------------------------------TTTT-GTT-------------------------------------------------------------------------------------------------------------------------------------------------------------CCC
dp5 XR_group8:5812876-5813003 - T-GCATAATGC--------------------------------------------------------------AACAGCAGCA---G--------CAGCG---GTGGCAGCGGTGGCAG---CAGC---GGCCG------AG--------------------------------------------------CACCGGAAATTGTTATTAGTA----G------------GT------------------------------------------------TTATTCGCTGA----------------------------G-------------------GTTTTTGTA-----TC-TTTGTA------------------------------------------------------------------------------TCTGTAGTTTTT----------------------------------------------------------------------------------------------TTTT-TTT-------------------------------------------------------------------------------------------------------------------------------------------------------------ATT
droPer2 scaffold_0:3606703-3606824 + A-GTGCAGCA--GCAGCAGCAG--------------------------------------------------------------------AA--GCAGCAGCAG------A---AGCAGCAGCAGAA-----------GCAG--------------------------------------------------CAGCGGCAGC--ACAT--------------------GAATGAG--------------------------------------------CGCATTCGACCT-----------------------------CGGT-T----------------T-A-TT-----TATTTATAT------------------------------------------------------------------------------TTTCATTTTTTT----------------------------------------------------------------------------------------------CCCT-CTT-------------------------------------------------------------------------------------------------------------------------------------------------------------TCC
droAna3 scaffold_13047:139758-139934 + C-ACCAATTAAACAAGGATTGGAAGGAGGATAAGAAAGCTAATTA-TATCAAG----TGAGT-----AGAAG-CGATG-AGG----------AGGAGATAAG------------GGCGC---CAGG---G--------ACAGA--------------------------------------------GTAGACTGCAGTAGC------TATTA----TTCCAAGTGGAAGCGTAG--------------------------------------------GGCATTGAGTAGTTTCTAACA----ATG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGGAT---------------------------------------------------------------------------------------------------------------------------------------------------AG-------------------------------CAGTTTTCGCTAG
droBip1 scf7180000396572:1339524-1339629 - G-AGCTTA--AAAAAGAAAAACAAT---------------------------GCGAGTGGAA-----AATGA-AGCTACAGCA---G---CA--GCAGCAGCAG------CAGCATCAG---CAGC--------------GG--------------------------------------------------CAGCGGCTCA------AACC--------------------A------------------------------------------------------------------------------------------------------------------T-------------------------------------------------------------------------------------------TTTT------AATT-------------------T-------------------------------------------------------A--------------------TTT----------------------------------------------------------------------------------------------------------------------------------------------------------------TT
droKik1 scf7180000302469:468462-468650 + A-GCAGC------------------------------------------------------------------------AGCAGCGG---CA--GCAGCAGCGG------C---AGCAGCAGCGGCA-----------ACAG--------------------------------------------------CATCTGC-------------A----G------------CCT-----------------------------------------------------------------------------------------------------------------------------------------------GTTTTGCCTGTTGTGTCTGTC-----AAGTGCTGCT----------------------------------------------------------------TGT-TTATCCTTTTT-CTAAAC-AGATCT-A----------------------------------------------------------------------------------------T--------------CTG--AACTTATTTTATAAAATTTATATTTTTTAAATTTTAAAATATTTTTTTAATA----------TATATATTTTTTAAT------------------ATTT
droFic1 scf7180000453901:792445-792708 - C-ACCAATTAAACAAGGATTGGAAGGAGGATAAGAAAGCTAATTA-TATCAAG----TGAGT-----AGTAA-AACAG-AGG----------AG------------------------------------------------CAGGAAAAGTCAA-TGGGGGTCATCGGTAGTGCCAATTGATTCGA--------------------G-AGTACG---------------------------------------------------------------------------------------------------------------------------GATTATAGTATTTTGT-AGTCAGCAGCTTT----------------------------TTC-----A----------------------------------------------TTCCAGGGGTTAAATATATACT-------------------------------------------------------TTT--------------------G-CCA--TT------CAGAT-GGGATTGGGTAATACCATTCTACT--------------GTA--AAGTTATTGTAT-----------------------------------AGATT----------TCTA---GTTTAGGAACATAAGTA-----TCCTCCCT
droEle1 scf7180000491013:147356-147488 + G-AGCAACACGAGCAACATCAGCAGCA----------------------------------------------------------------------------G------C---AACATCAGCAGCAGCAGCCA---------------------------------------------------------------------------------------------------AG--------------------------------------------CGCAATCAGCAAATTGTATTAAATGACT------------------TTA--------------------------------TA------------------------------------------------------------------TTGCAATTGCTG------GCCCTT----------------------------------------------------------------------------------------------TCTT-TTTGATAT------A--TCTTTG-AAGTA------------------CATAT------------------------------------------------------------------------------------------------------------TGC
droRho1 scf7180000776529:5894-6157 - C-ACCAATTAAACAAGGATTGGAAGGAGGATAAGAAAGCTAATTA-TATCAAG----TGAGT-----AGTAA-AACAG-AGG----------AG------------------------------------------------CAGG--AAGTCAT-TGGGGGT-------GAAGTCAATAGGATAGA--------------------G-------------------------------------------------------------------------------------------------------------------------------------------------T-AGTTAGCAGTTCT----------------------TGC-----------ACTTTAAAACTCATTTATTAAATGATGG---------------------------------------GGTTGCATATCCCGGAACTTTTTAGATCAGATTT-AAACGAAAAG--GATACATTTATTT---GCAAGCCACATT------------------------------------------ATGTTACT--------------GAA--A-------------------------------------------------TATAGCAGGATTAATGTAGGC------------------TTTTATTTAG
droBia1 scf7180000301345:34312-34512 + ACATCTAGCCAG-------------------------------------------------C-----AGCAGCGGCAG---CA---G---CA--GCAGCAACAG------C---AA------CATC---A--------GCAGC--------------------------------------------AGCAGCAGCGGCAAC------AACCA----GCCGTTG-------A-----CAACTCACAGG--------------------------------CCATTGTG-----CCCATGA----ATGAAAAGAAGCCAGAGTGT-TTCTG----------TTT----------------------------------------------------------------------------------------CAGTATTTTTCT------CCTT-------------------T-------------------------------------------------------A--------------------TTT-TTTTCC------T--TCGCTG-ATTGATGAATGTCAG------------------------------------------------------------------------------------------------CCGAAAGTGTGAGGG----------CAG
droTak1 scf7180000415078:333894-333976 + C-ACCAATTAAACAAGGATTGGAAGGAGGATAAGAAAGCTAATTA-TATCAAG----TGAGT-----AGTAA-AACAG-AGG----------AG---------------------------------------------GAGCAGGAAAAG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droEug1 scf7180000408900:71843-72117 - C-ACCAATTAAACAAGGATTGGAAGGAGGATAAGAAAGCTAATTA-TATCAAG----TGAGT-----AGTAA-AACAG-AGA----------AG------------------------------------------------CAGGAAAAGTCAAGTGGGGGA-------AATGCCATTTGATTAGA--------------------G----------------------------------------------------------------------------------------------------------------------------------GTT-TT----------------GCGGTTTTTGCAGATAAAGTTAGTAGCTAT------TTACTAATACTTTAAAAAGCAAGTGCTAAAT-------------------------------------------GGGTTGAATATTCTTCTCCTTATTAGATCAGATTAAAT--GAAAAAGGGATACATTTATTT---GCAGGACACCTTTCTT-TT-TA--T------AT-------A-------------TTTGCACT--------------ATA----------------------------------------------------------------------------AA--------------------TAT
dm3 chrX:9363147-9363308 + C-ATCAAC--AACAAGAACGACACGAGCAACAACATCAGCAGCAG-CAGCAAC----TG-------------------------------TA--GCAGCAAC------------ATCAT---CAGC---A--------GCAGC--------------------------------------------AGCAACTGCAGCAGC------AACT----------------GTAGCAG--------------------CAACATCAAG--------------CGCAATCAGCAAATTGCATTAAATGACT--------------------------------------------------TTGTA-----------------------------------------------------------------------------------TTGCAAT----------------------------------------------------------------------------------------------TGTT-GGT-------------------------------------------------------------------------------------------------------------------------------------------------------------TCT
droSim2 x:3385143-3385404 + dsi_10860 C-ACCAATTAAACAAGGATTGGAAGGAGGATAAGAAAGCTAATTA-TATCAAG----TGAGT-----AGTAA-AACAG-A-------------G------------------------------------------------CAGGAAAAGTCAA-TGGGGGA-AT--GCAATGCCAATTGGTTAGA--------------------C-AATAAG---------------------------------------------------------------------------------------------------------------------------GAT-AT-----------AGT-----TTTCTTAAAGGTCACGTTAGCTGCTGCTGCTGTG-----ATGTATTAAA----------------------------------------------------------------AATATCATGGTACTT-TTAGATCAGACTTTTTGCGTAGAT--GATATATATTTTTGGTGCAATACATCTTTCTA---------TCAATTAT-------A-------------ATTGTATC--------------GTA--------------------------------------------------------------------------------------------------AAG
droSec2 scaffold_4:3023929-3024190 - C-ACCAATTAAACAAGGATTGGAAGGAGGATAAGAAAGCTAATTA-TATCAAG----TGAGT-----AGTAA-AACAG-A-------------G------------------------------------------------CAGGAAAAGTCAA-TGGGGGA-AT--GCAATGCCAATTGGTTAGA--------------------C-AATAAG---------------------------------------------------------------------------------------------------------------------------GAT-AT-----------AGT-----TTTCTTAAAGGTCACGTTAGCTGCTGCTGCTGTG-----ATGTATTAAA----------------------------------------------------------------AATATCATGGTACTT-TTAGATCAGACTTTTTGCGTAGAT--GATATATATTTTTGGTGCAATACATCTTTCTA---------TCAATTAT-------A-------------ATTGTATC--------------GTA--------------------------------------------------------------------------------------------------AAG
droYak3 3L:5312308-5312433 + G-C----------------------------------------------------------------------AGC---AGCAGCAG---CA--GCAGCAGCAG------C---AACATCAACAGCA-----------GCAA--------------------------------------------------CATCAGA-------------A----G------------CCCTA--------------------------------------------TGCATTCGCCAC----------------------------GCTGT-TTC------------------TT-----TC-T--------------------------------------------------------------------------TGGTTAGAGTCT------CTT-------------------GT-------------------------------------------------------T--------------TT------T-TTT--TT------TATCT-AGT----G---------------TTGTGT--------------------------------------------------------------------------------------------------------------TTT
droEre2 scaffold_4690:1068983-1069215 + C-ACCAATTAAACAAGGATTGGAAGGAGGATAAGAAAGCTAATTA-TATCAAG----TGAGT-----AGTAA-AACAG-A-------------G------------------------------------------------CAGGAAAAGTCAA-TGGGGGA--------ATGCCAATTGGTTAGA--------------------C-AATAAG---------------------------------------------------------------------------------------------------------------------------GAT-AT---A---TGT-AGT-----TTTCTTAAAGGTCACAGTAGCTG---------TGT-----TG---TAAA-----------------------------------------------------CGTATGGTTTGAATAATCGGGTGCAT-TTAGATCAGACTT---GTGTAGAT--GCT----------------ATACATATTTCTA---------TCAAATAT-------C-------------ATT------------------------------------------------------------------------------------------------------------------------GTG

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droGri2
C-ACCAATTAAACAAGGATTGGAAGGAGGATAAGAAAGCTAATTA-TATCAAG----TGAGT-----AGTGG-AGCAGCAGCA---GCAACA--GCAGCAGCAG------C---AGCAGCAGCGG-------------------------------------------------------------------CAGCGGCAGT------TAGCA----G------------CTATATTCAATTTA-----------------------------------------------------------------------------TAT-----------------------------------------------------------------------------------------TTAATGTTTTTTATGTTTGAGTTGTTA------GTTTTT----------------------------------------------------------------------------------------------TTTT-TTTTTT-----------TCATAG-A---G---------------ATACGTTTTGCGATTTGAGAGATCTTCT---T-----------------------------------TAATT----------CGTA---TTTCGAATATTTAGGGGCAGTCTTGTTGAGSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads
droVir3
ACAGCAACTG-------------------------------------------------AGA-----GCAGC-AGCAGCAGCA---G--------CAGCA---GCGACAGCGGCA-----------------------GCAGC--------------------------------------------AGTGACAGCGCCAGC------AACG----------------AGGACAG--------------------CG-CATCAAAATAGAAGAAAAAGT-TTGCACGC---------------------------------TGTAAAC------------------TT---------------------------------------------------------------------------------------TGTTG------GTTTTT----------------------------------------------------------------------------------------------TTTT-TTTTTT-----------TTGATG-T---G---------------CTGTGTTT------------------------------------------------------------------------------------------------------------TGCSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
..................................................................................A---G--------CAGCA---GCGACAGCGGCA-----------------------GC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21130.081001000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTT----------------------------------------------------------------------------------------------TTTT-TTTTTT-----------TTGATG-T---.......................................................................................................................................20150.071000000000000000000000000000010000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................TT----------------------------------------------------------------------------------------------TTTT-TTTTTT-----------TTGATG-T---.......................................................................................................................................19170.061000000000000000000000000000001000000000000000000000000000000000
.........G-------------------------------------------------AGA-----GCAGC-AGCAGCAGCA---G--------CA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22190.051001000000000000000000000000000000000000000000000000000000000000
.........................................................................AGCAGCAGCA---G--------CAGCA---GCGACAGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.051000000000000000000000000000001000000000000000000000000000000000
droMoj3
G-A--------AGAAGAAATAGAAACAAATTATCTATGCTCATTAGTGTTATG----GCAGC-----AGCAG-AAG-------------------CAGCAGCAG------C---AGCAGCAGCAGCAGCAGCACAGCAGCAG--------------------------------------------------CAGCAGA--------C-GACAACAATTTCTTG---------------ATTCACACGCCTACAACAACAACA-------------------ATTGCC-----CCC--------------------------GT-TTTTGAGGGCAACAATTTTGGTGTTTTTT-TTTTTTTTTTTTT----------------------------TTT-----T----------------------------------------------T---------------------------------------------------------------------------------------------------------------------TTTTG---------------------------------GCTTTAAGGGTCCGCTAAGT-----------------------------------TAATT----------TTCA---ATTTGAAAAAGTGGGGG------------CSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.............................................................................................................................CAGCAGCACAGCAGCAG--------------------------------------------------CAGCA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2240.251100000
.....................................................................................................CAG------C---AGCAGCAGCAGCAGCAGCAC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.102000020
...................................................................................................................GCAGCAGCAGCAGCAGCAC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.051000010
.......................................................................G-AAG-------------------CAGCAGCAG------C---AGCAGCAGCAGCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................28200.051000010
droWil2
G-A--------------------AAGTGGCTAATAAAGCAAATCT-TGTTGA---------CAATGCTC-AA-GGCGACGGCA---A---CA--ACAGCA---G------C---AACAGCAGCAGCA-----------GCAA--------------------------------------------------CATTTG-------------CT----G------------CTCT------------------------------------------------TTTCGATTT----------------------------T-TAT-T----------------T-TGTA-----T-TTGGTTT------------------------------------------------------------------------------TTTTGATTTTTT----------------------------------------------------------------------------------------------TTTT-GTT-------------------------------------------------------------------------------------------------------------------------------------------------------------CCCSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.................................................................................................GCA---G------C---AACAGCAGCAGCA-----------GCAA--------------------------------------------------CA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.05100010
dp5
T-GCATAATGC--------------------------------------------------------------AACAGCAGCA---G--------CAGCG---GTGGCAGCGGTGGCAG---CAGC---GGCCG------AG--------------------------------------------------CACCGGAAATTGTTATTAGTA----G------------GT------------------------------------------------TTATTCGCTGA----------------------------G-------------------GTTTTTGTA-----TC-TTTGTA------------------------------------------------------------------------------TCTGTAGTTTTT----------------------------------------------------------------------------------------------TTTT-TTT-------------------------------------------------------------------------------------------------------------------------------------------------------------ATTSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
No Reads
droPer2
A-GTGCAGCA--GCAGCAGCAG--------------------------------------------------------------------AA--GCAGCAGCAG------A---AGCAGCAGCAGAA-----------GCAG--------------------------------------------------CAGCGGCAGC--ACAT--------------------GAATGAG--------------------------------------------CGCATTCGACCT-----------------------------CGGT-T----------------T-A-TT-----TATTTATAT------------------------------------------------------------------------------TTTCATTTTTTT----------------------------------------------------------------------------------------------CCCT-CTT-------------------------------------------------------------------------------------------------------------------------------------------------------------TCCSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
...................................................................................................AGCAG------A---AGCAGCAGCAGAA-----------G...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.051000001
.................AGCAG--------------------------------------------------------------------AA--GCAGCAGCAG------A---AG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.051000001
droAna3
C-ACCAATTAAACAAGGATTGGAAGGAGGATAAGAAAGCTAATTA-TATCAAG----TGAGT-----AGAAG-CGATG-AGG----------AGGAGATAAG------------GGCGC---CAGG---G--------ACAGA--------------------------------------------GTAGACTGCAGTAGC------TATTA----TTCCAAGTGGAAGCGTAG--------------------------------------------GGCATTGAGTAGTTTCTAACA----ATG----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGGAT---------------------------------------------------------------------------------------------------------------------------------------------------AG-------------------------------CAGTTTTCGCTAGSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
..........AACAAGGATTGGAAGGAGGATA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001100000
..........AACAAGGATTGGAAGGAGGATAAGA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000001
......ATTAAACAAGGATTGGAAGGAGGATA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001010000
droBip1
G-AGCTTA--AAAAAGAAAAACAAT---------------------------GCGAGTGGAA-----AATGA-AGCTACAGCA---G---CA--GCAGCAGCAG------CAGCATCAG---CAGC--------------GG--------------------------------------------------CAGCGGCTCA------AACC--------------------A------------------------------------------------------------------------------------------------------------------T-------------------------------------------------------------------------------------------TTTT------AATT-------------------T-------------------------------------------------------A--------------------TTT----------------------------------------------------------------------------------------------------------------------------------------------------------------TTSizeHit CountTotal NormTotal
No Reads
droKik1
A-GCAGC------------------------------------------------------------------------AGCAGCGG---CA--GCAGCAGCGG------C---AGCAGCAGCGGCA-----------ACAG--------------------------------------------------CATCTGC-------------A----G------------CCT-----------------------------------------------------------------------------------------------------------------------------------------------GTTTTGCCTGTTGTGTCTGTC-----AAGTGCTGCT----------------------------------------------------------------TGT-TTATCCTTTTT-CTAAAC-AGATCT-A----------------------------------------------------------------------------------------T--------------CTG--AACTTATTTTATAAAATTTATATTTTTTAAATTTTAAAATATTTTTTTAATA----------TATATATTTTTTAAT------------------ATTTSizeHit CountTotal NormTotal
No Reads
droFic1
C-ACCAATTAAACAAGGATTGGAAGGAGGATAAGAAAGCTAATTA-TATCAAG----TGAGT-----AGTAA-AACAG-AGG----------AG------------------------------------------------CAGGAAAAGTCAA-TGGGGGTCATCGGTAGTGCCAATTGATTCGA--------------------G-AGTACG---------------------------------------------------------------------------------------------------------------------------GATTATAGTATTTTGT-AGTCAGCAGCTTT----------------------------TTC-----A----------------------------------------------TTCCAGGGGTTAAATATATACT-------------------------------------------------------TTT--------------------G-CCA--TT------CAGAT-GGGATTGGGTAATACCATTCTACT--------------GTA--AAGTTATTGTAT-----------------------------------AGATT----------TCTA---GTTTAGGAACATAAGTA-----TCCTCCCTSizeHit CountTotal NormTotal
No Reads
droEle1
G-AGCAACACGAGCAACATCAGCAGCA----------------------------------------------------------------------------G------C---AACATCAGCAGCAGCAGCCA---------------------------------------------------------------------------------------------------AG--------------------------------------------CGCAATCAGCAAATTGTATTAAATGACT------------------TTA--------------------------------TA------------------------------------------------------------------TTGCAATTGCTG------GCCCTT----------------------------------------------------------------------------------------------TCTT-TTTGATAT------A--TCTTTG-AAGTA------------------CATAT------------------------------------------------------------------------------------------------------------TGCSizeHit CountTotal NormTotal
No Reads
droRho1
C-ACCAATTAAACAAGGATTGGAAGGAGGATAAGAAAGCTAATTA-TATCAAG----TGAGT-----AGTAA-AACAG-AGG----------AG------------------------------------------------CAGG--AAGTCAT-TGGGGGT-------GAAGTCAATAGGATAGA--------------------G-------------------------------------------------------------------------------------------------------------------------------------------------T-AGTTAGCAGTTCT----------------------TGC-----------ACTTTAAAACTCATTTATTAAATGATGG---------------------------------------GGTTGCATATCCCGGAACTTTTTAGATCAGATTT-AAACGAAAAG--GATACATTTATTT---GCAAGCCACATT------------------------------------------ATGTTACT--------------GAA--A-------------------------------------------------TATAGCAGGATTAATGTAGGC------------------TTTTATTTAGSizeHit CountTotal NormTotal
No Reads
droBia1
ACATCTAGCCAG-------------------------------------------------C-----AGCAGCGGCAG---CA---G---CA--GCAGCAACAG------C---AA------CATC---A--------GCAGC--------------------------------------------AGCAGCAGCGGCAAC------AACCA----GCCGTTG-------A-----CAACTCACAGG--------------------------------CCATTGTG-----CCCATGA----ATGAAAAGAAGCCAGAGTGT-TTCTG----------TTT----------------------------------------------------------------------------------------CAGTATTTTTCT------CCTT-------------------T-------------------------------------------------------A--------------------TTT-TTTTCC------T--TCGCTG-ATTGATGAATGTCAG------------------------------------------------------------------------------------------------CCGAAAGTGTGAGGG----------CAGSizeHit CountTotal NormTotal
No Reads
droTak1
C-ACCAATTAAACAAGGATTGGAAGGAGGATAAGAAAGCTAATTA-TATCAAG----TGAGT-----AGTAA-AACAG-AGG----------AG---------------------------------------------GAGCAGGAAAAG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEug1
C-ACCAATTAAACAAGGATTGGAAGGAGGATAAGAAAGCTAATTA-TATCAAG----TGAGT-----AGTAA-AACAG-AGA----------AG------------------------------------------------CAGGAAAAGTCAAGTGGGGGA-------AATGCCATTTGATTAGA--------------------G----------------------------------------------------------------------------------------------------------------------------------GTT-TT----------------GCGGTTTTTGCAGATAAAGTTAGTAGCTAT------TTACTAATACTTTAAAAAGCAAGTGCTAAAT-------------------------------------------GGGTTGAATATTCTTCTCCTTATTAGATCAGATTAAAT--GAAAAAGGGATACATTTATTT---GCAGGACACCTTTCTT-TT-TA--T------AT-------A-------------TTTGCACT--------------ATA----------------------------------------------------------------------------AA--------------------TATSizeHit CountTotal NormTotal
No Reads
dm3
C-ATCAAC--AACAAGAACGACACGAGCAACAACATCAGCAGCAG-CAGCAAC----TG-------------------------------TA--GCAGCAAC------------ATCAT---CAGC---A--------GCAGC--------------------------------------------AGCAACTGCAGCAGC------AACT----------------GTAGCAG--------------------CAACATCAAG--------------CGCAATCAGCAAATTGCATTAAATGACT--------------------------------------------------TTGTA-----------------------------------------------------------------------------------TTGCAAT----------------------------------------------------------------------------------------------TGTT-GGT-------------------------------------------------------------------------------------------------------------------------------------------------------------TCTSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
............................AACAACATCAGCAGCAG-CAGCAAC----.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2422.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000400000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................CAAC------------ATCAT---CAGC---A--------GCAGC--------------------------------------------...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1930.6720000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...............................................................................................CAGCAAC------------ATCAT---CAGC---A--------GCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2130.6720000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................CAGCAAC------------ATCAT---CAGC---A--------GCAGC--------------------------------------------...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2230.6720000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000010000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................TAAATGACT--------------------------------------------------TTGTA-----------------------------------------------------------------------------------TTGCAAT----------------------------------------------------------------------------------------------........................................................................................................................................................................2120.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000
.................................................................................................GCAAC------------ATCAT---CAGC---A--------GCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1940.5020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000
................................................................................................AGCAAC------------ATCAT---CAGC---A--------GCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2030.3310000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................GCAAC------------ATCAT---CAGC---A--------GCAGC--------------------------------------------...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2030.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..........................GCAACAACATCAGCAGCAG-CAGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2330.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..............................................................................................GCAGCAAC------------ATCAT---CAGC---A--------GCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2230.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................AGCAAC------------ATCAT---CAGC---A--------GCAGC--------------------------------------------...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2130.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..............................................................................................GCAGCAAC------------ATCAT---CAGC---A--------GCAGC--------------------------------------------...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2330.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..................................ATCAGCAGCAG-CAGCAAC----.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.2550000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................AT---CAGC---A--------GCAGC--------------------------------------------AGCAAC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.2550000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................CAGC--------------------------------------------AGCAACTGCAGCAGC------AAC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2290.2220000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................CAACATCAGCAGCAG-CAGCAAC----.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22150.2030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................A--GCAGCAAC------------ATCAT---CAGC---.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18100.2020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................A--------GCAGC--------------------------------------------AGCAACTGCAGCAGC------AAC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2450.2010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................AGCAACAACATCAGCAGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1860.1710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...........................................................................................A--GCAGCAAC------------ATCAT---CAGC---A--------GC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2160.1710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.............................ACAACATCAGCAGCAG-CAGCA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2160.1710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100
..............................................................................................GCAGCAAC------------ATCAT---CAGC---A--------G...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1960.1710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.............................................................................................................................................GC--------------------------------------------AGCAACTGCAGCAGC------AA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19130.1520000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................GC--------------------------------------------AGCAACTGCAGCAGC------A.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.1530000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010100000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................GCAGCAAC------------ATCAT---CAGC---A--------................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1890.1110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................A--GCAGCAAC------------ATCAT---CAGC---A--------................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1990.1110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
..........................................................................................TA--GCAGCAAC------------ATCAT---CAGA---T--------................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20130.0810000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
...............................AACATCAGCAGCAG-CAGCAAC----.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21150.0710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................CAACATCAGCAGCAG-CAGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
...............................AACATCAGCAGCAG-CAGCA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................AGCAACTGCAGCAGC------AAC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................CAACATCAGCAGCAG-CAGCAAC----C................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................23200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................C------------ATCAT---CAGC---A--------GCAGC--------------------------------------------AGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
droSim2
C-ACCAATTAAACAAGGATTGGAAGGAGGATAAGAAAGCTAATTA-TATCAAG----TGAGT-----AGTAA-AACAG-A-------------G------------------------------------------------CAGGAAAAGTCAA-TGGGGGA-AT--GCAATGCCAATTGGTTAGA--------------------C-AATAAG---------------------------------------------------------------------------------------------------------------------------GAT-AT-----------AGT-----TTTCTTAAAGGTCACGTTAGCTGCTGCTGCTGTG-----ATGTATTAAA----------------------------------------------------------------AATATCATGGTACTT-TTAGATCAGACTTTTTGCGTAGAT--GATATATATTTTTGGTGCAATACATCTTTCTA---------TCAATTAT-------A-------------ATTGTATC--------------GTA--------------------------------------------------------------------------------------------------AAGSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
...........................................................................................................................................................................................................................................................................................................................................................................TTTCTTAAAGGTCACGTTAGCTGCTGCTGC.................................................................................................................................................................................................................................................................................................................................3011.00100000001000000000
..................TTGGAAGGAGGATAAGAAAGCT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100100000000000000
.......................AGGAGGATAAGAAAGCTAATTA-TAT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100000000000001000
droSec2
C-ACCAATTAAACAAGGATTGGAAGGAGGATAAGAAAGCTAATTA-TATCAAG----TGAGT-----AGTAA-AACAG-A-------------G------------------------------------------------CAGGAAAAGTCAA-TGGGGGA-AT--GCAATGCCAATTGGTTAGA--------------------C-AATAAG---------------------------------------------------------------------------------------------------------------------------GAT-AT-----------AGT-----TTTCTTAAAGGTCACGTTAGCTGCTGCTGCTGTG-----ATGTATTAAA----------------------------------------------------------------AATATCATGGTACTT-TTAGATCAGACTTTTTGCGTAGAT--GATATATATTTTTGGTGCAATACATCTTTCTA---------TCAATTAT-------A-------------ATTGTATC--------------GTA--------------------------------------------------------------------------------------------------AAGSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
...........ACAAGGATTGGAAGGAGGATAAGA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010010
......ATTAAACAAGGATTGGAAGGAGGAT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010010
droYak3
G-C----------------------------------------------------------------------AGC---AGCAGCAG---CA--GCAGCAGCAG------C---AACATCAACAGCA-----------GCAA--------------------------------------------------CATCAGA-------------A----G------------CCCTA--------------------------------------------TGCATTCGCCAC----------------------------GCTGT-TTC------------------TT-----TC-T--------------------------------------------------------------------------TGGTTAGAGTCT------CTT-------------------GT-------------------------------------------------------T--------------TT------T-TTT--TT------TATCT-AGT----G---------------TTGTGT--------------------------------------------------------------------------------------------------------------TTTSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
..C----------------------------------------------------------------------AGC---AGCAGCAG---CA--GCAGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.20400400000000
....................................................................................................GCAG------C---AACATCAACAGCA-----------GCA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21160.06101000000000
..C----------------------------------------------------------------------AGC---AGCAGCAG---CA--GCAGCA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.05100000100000
..C----------------------------------------------------------------------AGC---AGCAGCAG---CA--GCAGCAGCAG------C---A.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.05101000000000
droEre2
C-ACCAATTAAACAAGGATTGGAAGGAGGATAAGAAAGCTAATTA-TATCAAG----TGAGT-----AGTAA-AACAG-A-------------G------------------------------------------------CAGGAAAAGTCAA-TGGGGGA--------ATGCCAATTGGTTAGA--------------------C-AATAAG---------------------------------------------------------------------------------------------------------------------------GAT-AT---A---TGT-AGT-----TTTCTTAAAGGTCACAGTAGCTG---------TGT-----TG---TAAA-----------------------------------------------------CGTATGGTTTGAATAATCGGGTGCAT-TTAGATCAGACTT---GTGTAGAT--GCT----------------ATACATATTTCTA---------TCAAATAT-------C-------------ATT------------------------------------------------------------------------------------------------------------------------GTGSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
................................................................................................................................................................................AATTGGTTAGA--------------------C-AATAAG---------------------------------------------------------------------------------------------------------------------------GA......................................................................................................................................................................................................................................................................................................................................................................................2011.0010000010
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTTGAATAATCGGGTGCAT-TTA...........................................................................................................................................................................................................................2411.0010001000

Generated: 05/17/2015 at 10:05 PM