dgr_160

exon [dgri_GLEANR_9359:2]; CDS [Dgri\GH24730-cds]; intron [Dgri\GH24730-in]; Antisense to intron [Dgri\GH24227-in]

Name	Class	Family	Strand
(CAG)n	Simple_repeat	Simple_repeat	+

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TACAAATGTGCCCGCCCAGGGGCATGGTCAGGCTCAGGGTCAGGGTCAGGGTCAGGGCAATGGCCATCATCATCATCATCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAACAGCATCAGCATCATCATGGCGGCCAATCAAAGAGTCCGCCACGCAACTCGATACGCGCCCTGTTGGCGAAGAGTTTCCGTTCAAAGTCGTCGTCGCACAGCGGCCAATCGACATCGTCGTCGCCGAGTGCCGAGG ************************************************..((((((..(((((.((((...........((.((.((.((.((....)).)).)).)).))....((....))......)))).)))))......((((..((...)).)))).......))))))((((((.........)).)))).************************************************	Read size	Hit Count	Total Norm	Total	M041 female body
.....................................................................................................AGCAGCAGCAGCAACAGCATCAGCATCA..........................................................................................................................	28	1	1.00	1	1
............................................................................................................GCAGCAACAGCATCAGCATCA..........................................................................................................................	21	5	0.20	1	1
..............................................................................TCAGCAGCAGCAGCAGCAGCAGCA.....................................................................................................................................................	24	20	0.15	3	3

ATGTTTACACGGGCGGGTCCCCGTACCAGTCCGAGTCCCAGTCCCAGTCCCAGTCCCGTTACCGGTAGTAGTAGTAGTAGTCGTCGTCGTCGTCGTCGTCGTCGTCGTCGTCGTTGTCGTAGTCGTAGTAGTACCGCCGGTTAGTTTCTCAGGCGGTGCGTTGAGCTATGCGCGGGACAACCGCTTCTCAAAGGCAAGTTTCAGCAGCAGCGTGTCGCCGGTTAGCTGTAGCAGCAGCGGCTCACGGCTCC ************************************************..((((((..(((((.((((...........((.((.((.((.((....)).)).)).)).))....((....))......)))).)))))......((((..((...)).)))).......))))))((((((.........)).)))).************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M041 female body	V109 male body
...........................................CCAGTCCCAGTGCTGTTAC.............................................................................................................................................................................................	19	2	1	1.00	1	1	0
...........................................CCAGTCCCAGTGCTGTTA..............................................................................................................................................................................................	18	2	5	0.20	1	1	0
.................................................................................................................................................................................................GCAAGTTTTCGCTGCAGCG.......................................	19	3	13	0.08	1	0	1

Species	Coordinate	ID	Alignment
droGri2	scaffold_14853:5277836-5278086 +	dgr_160	TACAAATGTGCCCGCCCA-------GGGG-----------------CA-TGGTCA-GGC---TCAGGGTCAGGGT-------------------------------------------------------------------------CAGGGTCAGG---------GCAATGGCC-----AT------------CATCATCATCATCAGCAGCAG---------------------CAG---------CAG----CAGCAG---------------------------------------------CAGCA------GCAGCAGCAACAGCATCA--------GCA----------------------TCATCATGGCGG-----------CCAATCAAAGAGTCCGCCACGCAACTCGATACGCGCCCTGTTGGCGAAGAGTTTCCGTTCAAAG-TCGT----------CGTCGCAC------------------------------------------------------------------------------------------------------------------------------------AG------------------CGGC----CAATCGACATC-GTCGT-CGCCGAGTGCCGAGG
droVir3	scaffold_12726:845530-845684 +		TACGAATGTGCCCGCTCA-------GGG-----------------------------------------------------------------------------------------------------------------------------TCAGG---------GCAATGGCC-----AG----------------------------------------------------------------------------C------ACGG--------------------------------------------------------------------------------------------------------------------------ACCGTCGAAGAGTCCGCCGCGCAACTCGATACGCGCGCTGCTGGCCAAGAGCTTCCGCTCGAAG-TCGT----------CGTCGCAC------------------------------------------------------------------------------------------------------------------------------------AG------------------CGGC----CAGTCGACATC-GTCCT-CGCCAAGCGCCGAGG
droMoj3	scaffold_6473:9361062-9361219 -		TACGAACGTGCCCGCCCA-------GGG------------------------------------------------------------------------------------------------------CC-----------------------AGG---------GCAATGGAC-----AT---------------CAT----------------------------------------------------------C------ACGC--------------------------------------------------------------------------------------------------------------------------GCCGTCAAAGAGTCCGCCGCGCAACTCGATCCGGGCGCTGCTGGCCAAGAGCTTCCGCTCGAAG-TCAT----------CGTCGCAC------------------------------------------------------------------------------------------------------------------------------------AG------------------CGGC----CAGTCCACATC-GTCGT-CGCCCAGCGCCGAGG
droWil2	scf2_1100000004909:11158701-11158953 +		TGGACATGGACATGGCCA-------CGGA-----------------CA-TGGTCA-TGG---GCATGGACACGGT-------------------------------------------------------------------------CATGGTCATG---------CACATGGGC-----AT----------------------------------------------------------------------------C------ATACACTGCCAGTCAATTCTCTGCAGCATTTGCAGCAGGAGAAGAAAAAGAAAAAAT------TAAATAC--------CCA----------------------T-ATCACGTTGCCCACTGTTGCATCACTGCA-------------GAAT-TCATCCTCCGCTTCCTCCACTGGATCCTCCTCGCTAA-------------------------ATGTTATAG-------------------------------------------------------------------------------------------------CTGCATC------------------GG------------------CA---------TCGTCTTC-ATCAT-CTTCCAGC-CTTAGT
dp5	XL_group1e:10597942-10598159 +		CACGAATGTGCCCGCCCA-------GGGA-----------------TC-CGCACA-GGC---CCAGGCCCAGGCT-------------------------------------------------------------------------TTGGCCCATG---------CCCATGCCC-----AG------------GCCCAGGCCCAGGGACAGATG---------------------CAG------AT----------GC------AGGC--------------------------------------------------------------------------------------------------------------------------GCCGTCGAAGAGCCCGCCGAGGAACTCCATACGCGCTCTGTTGGCCAAGAGCTTCCGCTCGAA-ATCAT----------CGTCACACAACGG------------------------------------------------------------------------------------------------------------------------------GGG------------------AGGA----CAGTCGACGTC-GTCGT-CGCCGAGCGCCGAGG
droPer2	scaffold_14:37245-37468 +		CACGAATGTACCCGCCCA-------GGGA-----------------TC-CGCACA-GGC---CCAGGCCCAGGCC-------------------------------------------------------------------------CTGGCCCATG---------CCCATGCCC-----AG------------GCCCAGGCCCAGGGACAGATG---------------------CAGATGCAGAT----------GC------AGGC--------------------------------------------------------------------------------------------------------------------------GCCGTCGAAGAGCCCGCCGAGGAACTCCATACGCGCTCTGTTGGCCAAGAGCTTCCGCTCGAA-ATCAT----------CGTCACACAACGG------------------------------------------------------------------------------------------------------------------------------GGG------------------GGGA----CAGTCCACGTC-GTCGT-CGCCGAGCGCCGAGG
droAna3	scaffold_13340:22911134-22911352 +		TGCACA-GTGTCCACCTG-------GGAG-----------------CC-TCG---------------------------------------------------------------------------------------------------------A---------G-CAGCG--GCAGCAGCAGCA---CCACCAGCAGTAG---------------------------------TGC---------CTCCCACCTGTTGCAGC------------------------AACAGCAG---------CAGCA------GCAGCAGCAACAAC---------------AA---------CAGCAGCAACATCA---G-------------------------------------------------------CAGCA---------------GCAACAACAGCAGCAGTCAC-------------------------------------------AGCAATTGGTGTCCCA--------------------------------------------------------------TCAAAGTG--------ACTCCAAGTCGTCGCCAGCTCTGCAAC----TGATGGCCGCT-T-----------CCGCCTCCG
droBip1	scf7180000396569:811986-812189 +		CAGCAT---------------------------------------------------------CAGAGT--------------------------------------------------------------C-----------------------AGG---------CCCAACT--GCAGCAGCATCA---CCAGCAACAGAATCAGCAACAAAAT---------------------CAGC------AACAA----CAGCAGCAGC---------------------------------------------A------GCATCAGCAAC-------------------------------------------------------------------------------------------------------------------------------AGCAGCAACATCAAC---AACA-GCCAATGCCGTTGCCACCAAATGACATATTATCCCGCGAAGATATAGAGGAGATAGATGCCT-TGTTTAATATGTCGCCGTTGCC--------------------------------------------------------------------------------------------------TTCACTGGGA
droKik1	scf7180000302685:904838-905058 +		CACAAATGTGCCCGCCCA-------GGGA-----------------TC-GGGATCTAGC---TCAGGTTCCGGTTCCGGTTCGGGTTCCGTTTCCGCCTCCGGTTCGGGTTCGGGAT--------------C-----------------------AGG---------CC------------AG---------------------------------------------------------------GC----------CC------AGGG--------------------------------------------------------------------------------------------------------------------------CCACTCAAAGAGTCCGCCCCGAAACTCCATACGCGCCCTGCTGGCCAAGAGCTTCCGCTCGAAGAGCAGCTCCACCCAC--------------------------------------------------------------------------------------------------------------------------------------------GG------------------CGGC----CAGTCCACCTC-CAGTT-CGCCCAGCGCCGAGG
droFic1	scf7180000453808:35435-35649 -		CACGAATGTGCCCGCCTC-------GG---------------------------------------GCTC------------CG------------------------------CATCCGCC---CAGGC----------------------------------------------GGTGCACCACCA---CCTG------------------CAGCAGCAGCAGCAGCATCAG---CAGC------ACCAC----GCTCCGCAGCAGGG--------------------------------------------------------------------------------------------------------------------------ACACTCGAAGAGTCCGCCGAGAAACTCCATACGCGCTCTGCTGGCGAAGAGCTTCCGCTCGAAGAGCAGCAGCAACCAC--------------------------------------------------------------------------------------------------------------------------------------------GG------------------CGGC----CAGTCCACCTC-GAGTT-CGCCGAGCGCCGAGG
droEle1	scf7180000490751:462029-462258 +		CACGAATGTGCCAC----CGGCCCAGGGA-----------------TC-GGC---TGGCTCCTCCAGTTC------------GGGATCTGCATCAGGATCGGGATCGG------GATC---------GGGACA-----------------AGGGCATG---------GACATGGCC-----AG------------GGACAC----------------------------------------------------------C------AGGG--------------------------------------------------------------------------------------------------------------------------CCACTCGAAGAGTCCGCCGAGGAACTCGATACGCGCCCTGCTGGCCAAGAGTTTCCGCTCGAAGAGCAGCCACACCCAT-----------GG------------------------------------------------------------------------------------------------------------------------------AGG------------------CGGT----CAGTCCACCTC-CAGTT-CGCCCAGTGCCGAGG
droRho1	scf7180000778091:90361-90572 +		CACGAACGTGCCGC----CGGCCCAGGGA-----------------TC-GG------GCTCCTCCAGCTC------------GG------------------------------GATCGGGA---CAGGGGCA-----------------GGGACAGG---------GACATGGCC-----AG------------GCCCAA----------------------------------------------------------C------AGGG--------------------------------------------------------------------------------------------------------------------------CCACTCGAAGAGCCCGCCGAGGAACTCCATACGCGCCCTGCTGGCCAAGAGCTTCCGCTCGAAGAGCAGCAGCACCCAC--------AACCA------------------------------------------------------------------------------------------------------------------------------GGG------------------TGGC----CAGTCCACCTC-CAGTT-CGCCCAGTGCCGAGG
droBia1	scf7180000302187:184975-185171 -		CACGAATGTGCCCG----CTGCCCAGGGA-----------------TC-GA------GC---TCGAGTTC------------CG------------------------------GATCAGGAGGTCAGGGTC-----------------------AG--------------------------------------------------------------------------------CAGGGACAGCA----------GC------AAGT--------------------------------------------------------------------------------------------------------------------------CCACTCGAAGAGTCCGCCACGGAACTCGATACGCGCCCTGCTGGCCAAAAGCTTTCGCTCGAAGAGCAGCACCACCCAT-----------CA------------------------------------------------------------------------------------------------------------------------------TGG------------------TGGC----CAGTCCACCTC-CAGTT-CGCCAAGCGCCGAGG
droTak1	scf7180000415158:86530-86747 -		CACGAATGTGCCAG----CCGCCCAAGGA-----G-GATCCGTT--TC-GG------GT---ACGAGTTC------------CG------------------------------GATCTGGA-----------------------------------G---------TCCAA--------------------------------------CAGCAG---------------------CAG------CA----------GT------CGGG--------------------------------------------------------------------------------------------------------------------------TCACTCGAAGAGTCCGCCACGCAACTCGATACGCGCCCTGCTGGCCAAGAGCTTCCGCTCGAAGAGCAGCAGCCATCACCATCACA-----------------------------------------------------------------------------------------------------------------------GCGGTGGTGGTGGTGG------------------TGGT----CAGTCCACCTC-CAGTT-CGCCGAGTGCCGAGG
droEug1	scf7180000409089:224813-225006 -		CACGAATGTGCCAG----CTGCCCAGGGT-----------------TC-GA------GT---TCCAGTTC------------CG------------------------------GATCTGTT---CAGGGTC-----------------------AGG---------CCCATCA-----------------------TCAT----------------------------------------------------------C------AGGG--------------------------------------------------------------------------------------------------------------------------CCATTCGAAGAGTCCGCCAAGGAACTCGATACGCGCCCTGCTGGCCAAGAGTTTCCGTTCGAAGAGCAGCACCAATCAT-----------GG------------------------------------------------------------------------------------------------------------------------------TGG------------------TGGT----CAATCCACTTC-AAGTT-CGCCCAGTGCCGAGG
dm3	chrX:12584930-12585167 -		CAGGCCCATCACTTG---CATCCCAGTCA-----------------CG-GA------CACTCGCCATC---------------------------------------------------------------------------------------------------------------------------------GCAGCAGCAGCAACAGCAG---------------------CAG---------CAA----CAGCAG---------------------------------------------CAACA------GCAGCAGCAACAGG--CGGCTGCAGC---A-CAACAACAATT--------------------------------GCTGGTGAAAAGCGGCTCAAT------CACCCATGGAACACCGGCCAATAGTGCCCAGCAACAGATTAT----------CGTTC----------------------------------------------------------------------------------------------------ATGCACC----------------AGCGACGG---CAG----------CAG-----CAGC-----ACCCTCCTCCCTGCTCAGTCCCAAGTTCGATG
droSim2	2l:8533209-8533433 +		GCCCAC---GCGGGT-------------GCAAGGTCAGCCTGGCCA-GA--------------------------------------------------------------------------------AT-----------------------CAGTCGCTGA-----------------------------------------------------------------------------------------------------------ACGGTAGTGGAGGCAGTGCAGCAGCGGCAGCGGCCGCGGCAGCAGCGGCAGC------GCAACAG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCGCGCCAGGATATGTACCAGATGAACGCGCCCAATGGATACATGCCCAATGGCTACATGATGCACGCGGATCCGGCCGGAGC------------------GG------------------CAGCCTACCAGAC---CTCCTACAT-GGGCCAGCACTACGC
droSec2	scaffold_3:4301382-4301606 +		GCCCAC---GCGGGT-------------GCAAGGTCAGCCTGGCCA-GA--------------------------------------------------------------------------------AC-----------------------CAGTCGCTAA-----------------------------------------------------------------------------------------------------------ACGGTAGTGGAGGCAGTGCAGCAGCGGCAGCAGCGGCGGCAGCAGCGGCAGC------GCAACAG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCGCGCCAGGATATGTACCAGATGAACGCGCCCAATGGATACATGCCCAATGGCTACATGATGCACGCGGATCCGGCCGGAGC------------------GG------------------CAGCCTACCAGAC---CTCCTACAT-GGGCCAGCACTACGC
droYak3	X:18938303-18938512 -		CTGGCAAGAGCCATTACC-------AGAA-----------------TC-----------------------------------------------------------------------------------------------------------AGGCGCACCATGCCGGTCACC-----AAAATCATCACCAGCATCAG------------CAG---------------------CAC---------CAC----CAGCAGCATC------------------------AACAGCAC---------CACCA------CCAGCAGCAACAGC---------------AC---------CATCGGGACTATCA---C-------------------------------------------------------CATGGCCACGGGCGCCAGTATGGA------------------------------------------------------------------------------------------------------------------------CACCACTCGCATCGCGACTACAGA-------------G------------------ATGG----CA-GCGACGAC-GTCGG-CGGCG-GGTCCGCGG
droEre2	scaffold_4770:10776612-10776832 -		AATGCGCCAGCGGGAACA-------GGA------G------------------------------------------------------------------------------------------------CAGCAGGAGAACATGGTCAAGATCAAGCA--GCACGCA-----------------CG---CCAG------------------CAGCAGCAGCAGCAGCAACAGCAGCAT---------CAC----CAGCAGCAGC---------------------------------------------A------GCAACACCACCAGG--CC----CAGC---AGCAGCAGCGATT-----------------------------------------------CCTGGGCCAC------------CAGCAG---------------------------------------------GCGCTGTCGCCGCATCCACATCGTTTGT-------------------------------------------------------------------------------------------------CG---TCC------------------TCGT----CG-ACGCCACC-AGCTT-TGCAGCACGCGCTGC

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droGri2

TACAAATGTGCCCGCCCA-------GGGG-----------------CA-TGGTCA-GGC---TCAGGGTCAGGGT-------------------------------------------------------------------------CAGGGTCAGG---------GCAATGGCC-----AT------------CATCATCATCATCAGCAGCAG---------------------CAG---------CAG----CAGCAG---------------------------------------------CAGCA------GCAGCAGCAACAGCATCA--------GCA----------------------TCATCATGGCGG-----------CCAATCAAAGAGTCCGCCACGCAACTCGATACGCGCCCTGTTGGCGAAGAGTTTCCGTTCAAAG-TCGT----------CGTCGCAC------------------------------------------------------------------------------------------------------------------------------------AG------------------CGGC----CAATCGACATC-GTCGT-CGCCGAGTGCCGAGG	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
....................................................................................................................................................................................................................................................................................................................AGCA------GCAGCAGCAACAGCATCA--------GCA----------------------TCA............................................................................................................................................................................................................................................................................................................	28	1	1.00	1	1	0
.................................................................................................................................................................................................................................................................................................................................GCAGCAACAGCATCA--------GCA----------------------TCA............................................................................................................................................................................................................................................................................................................	21	5	0.20	1	1	0
..............................................................................................................................................................................................................TCAGCAGCAG---------------------CAG---------CAG----CAGCAG---------------------------------------------CA...........................................................................................................................................................................................................................................................................................................................................................................	24	20	0.15	3	3	0

droVir3

TACGAATGTGCCCGCTCA-------GGG-----------------------------------------------------------------------------------------------------------------------------TCAGG---------GCAATGGCC-----AG----------------------------------------------------------------------------C------ACGG--------------------------------------------------------------------------------------------------------------------------ACCGTCGAAGAGTCCGCCGCGCAACTCGATACGCGCGCTGCTGGCCAAGAGCTTCCGCTCGAAG-TCGT----------CGTCGCAC------------------------------------------------------------------------------------------------------------------------------------AG------------------CGGC----CAGTCGACATC-GTCCT-CGCCAAGCGCCGAGG	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
...............................................................................................................................................................................C-----AG----------------------------------------------------------------------------C------ACGG--------------------------------------------------------------------------------------------------------------------------ACCGTCGAAGAGT...........................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C------------------------------------------------------------------------------------------------------------------------------------AG------------------CGGC----CAGTCGACATC-GTCCT-...............	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACATC-GTCCT-CGCCAAGCGCC....	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................GCTGCTGGCCAAGAGCTTCCGCT.............................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................C-----AG----------------------------------------------------------------------------C------ACGG--------------------------------------------------------------------------------------------------------------------------ACCGTCGAAG..............................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCGCTCGAAG-TCGT----------CGTCGCAC------------------------------------------------------------------------------------------------------------------------------------AG------------------C........................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGT----------CGTCGCAC------------------------------------------------------------------------------------------------------------------------------------AG------------------CGGC----CAGTCGA..........................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................GCAACTCGATACGCGCGCTGCT..............................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

TACGAACGTGCCCGCCCA-------GGG------------------------------------------------------------------------------------------------------CC-----------------------AGG---------GCAATGGAC-----AT---------------CAT----------------------------------------------------------C------ACGC--------------------------------------------------------------------------------------------------------------------------GCCGTCAAAGAGTCCGCCGCGCAACTCGATCCGGGCGCTGCTGGCCAAGAGCTTCCGCTCGAAG-TCAT----------CGTCGCAC------------------------------------------------------------------------------------------------------------------------------------AG------------------CGGC----CAGTCCACATC-GTCGT-CGCCCAGCGCCGAGG	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
No Reads

droWil2

TGGACATGGACATGGCCA-------CGGA-----------------CA-TGGTCA-TGG---GCATGGACACGGT-------------------------------------------------------------------------CATGGTCATG---------CACATGGGC-----AT----------------------------------------------------------------------------C------ATACACTGCCAGTCAATTCTCTGCAGCATTTGCAGCAGGAGAAGAAAAAGAAAAAAT------TAAATAC--------CCA----------------------T-ATCACGTTGCCCACTGTTGCATCACTGCA-------------GAAT-TCATCCTCCGCTTCCTCCACTGGATCCTCCTCGCTAA-------------------------ATGTTATAG-------------------------------------------------------------------------------------------------CTGCATC------------------GG------------------CA---------TCGTCTTC-ATCAT-CTTCCAGC-CTTAGT	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
...........................................................................................................................................................................................................................................................................................................AGCAGGAGAAGAAAAAGAA..................................................................................................................................................................................................................................................................................................................................................................	19	2	3.50	7	0	0	3	4	0
...........................................................................................................................................................................................................................................................................................................AGCAGGAGAAGAAAAAGA...................................................................................................................................................................................................................................................................................................................................................................	18	2	2.50	5	0	0	0	5	0
....................................................TCA-TGG---GCATGGACACGGT-------------------------------------------------------------------------CA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	2.00	2	0	0	0	0	2
....................................................TCA-TGG---GCATGGACACGGT-------------------------------------------------------------------------CT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	1
............................................................................................................................................................................................................................................................................................................GCAGGAGAAGAAAAAGAA..................................................................................................................................................................................................................................................................................................................................................................	18	2	1.00	2	0	0	0	2	0
..........................GGA-----------------CA-TGGTCA-TGG---GCAT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	3	0.33	1	0	0	1	0	0

dp5

CACGAATGTGCCCGCCCA-------GGGA-----------------TC-CGCACA-GGC---CCAGGCCCAGGCT-------------------------------------------------------------------------TTGGCCCATG---------CCCATGCCC-----AG------------GCCCAGGCCCAGGGACAGATG---------------------CAG------AT----------GC------AGGC--------------------------------------------------------------------------------------------------------------------------GCCGTCGAAGAGCCCGCCGAGGAACTCCATACGCGCTCTGTTGGCCAAGAGCTTCCGCTCGAA-ATCAT----------CGTCACACAACGG------------------------------------------------------------------------------------------------------------------------------GGG------------------AGGA----CAGTCGACGTC-GTCGT-CGCCGAGCGCCGAGG	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
..................................................................................................................................................................................................................CAGATG---------------------CAG------AT----------GC------AGGC--------------------------------------------------------------------------------------------------------------------------GCC.....................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTGGCCAAGAGCTTCCGCTCG...........................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	1	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................GAGCCCGCCGAGGAACTCCATACC.......................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	1	0	0	0	0	0	0

droPer2

CACGAATGTACCCGCCCA-------GGGA-----------------TC-CGCACA-GGC---CCAGGCCCAGGCC-------------------------------------------------------------------------CTGGCCCATG---------CCCATGCCC-----AG------------GCCCAGGCCCAGGGACAGATG---------------------CAGATGCAGAT----------GC------AGGC--------------------------------------------------------------------------------------------------------------------------GCCGTCGAAGAGCCCGCCGAGGAACTCCATACGCGCTCTGTTGGCCAAGAGCTTCCGCTCGAA-ATCAT----------CGTCACACAACGG------------------------------------------------------------------------------------------------------------------------------GGG------------------GGGA----CAGTCCACGTC-GTCGT-CGCCGAGCGCCGAGG	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCACGTC-GTCGT-CGCC...........	18	1	2.00	2	2	0	0	0	0	0

droAna3

TGCACA-GTGTCCACCTG-------GGAG-----------------CC-TCG---------------------------------------------------------------------------------------------------------A---------G-CAGCG--GCAGCAGCAGCA---CCACCAGCAGTAG---------------------------------TGC---------CTCCCACCTGTTGCAGC------------------------AACAGCAG---------CAGCA------GCAGCAGCAACAAC---------------AA---------CAGCAGCAACATCA---G-------------------------------------------------------CAGCA---------------GCAACAACAGCAGCAGTCAC-------------------------------------------AGCAATTGGTGTCCCA--------------------------------------------------------------TCAAAGTG--------ACTCCAAGTCGTCGCCAGCTCTGCAAC----TGATGGCCGCT-T-----------CCGCCTCCG	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGTG--------ACTCCAAGTCGTCGCC................................................	21	1	1.00	1	0	1	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G--------ACTCCAAGTCGTCGCCAGCTC...........................................	22	1	1.00	1	0	1	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................ATCA---G-------------------------------------------------------CAGCA---------------GCAACAACAGC..................................................................................................................................................................................................................	21	6	0.17	1	1	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................AACAGCAG---------CAGCA------GCAGCAGC..........................................................................................................................................................................................................................................................................................................................................................	21	20	0.15	3	1	2	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................AGCAACAAC---------------AA---------CAGCAGCA..................................................................................................................................................................................................................................................................................................................	19	20	0.15	3	0	3	0	0	0	0
.....................................................................................................................................................................................................................................................................GCAGC------------------------AACAGCAG---------CAGCA------GCAGC.............................................................................................................................................................................................................................................................................................................................................................	23	20	0.15	3	0	3	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................TCA---G-------------------------------------------------------CAGCA---------------GCAACAACAGCAGC...............................................................................................................................................................................................................	23	8	0.13	1	0	1	0	0	0	0
...................................................................................................................................................................................................................................................................................................ACAGCAG---------CAGCA------GCAGCAGC..........................................................................................................................................................................................................................................................................................................................................................	20	20	0.10	2	0	2	0	0	0	0
..................................................................................................................................................................................................................................................................................................AACAGCAG---------CAGCA------GCAGC.............................................................................................................................................................................................................................................................................................................................................................	18	20	0.10	2	2	0	0	0	0	0
........................................................................................................................................................................................................................................................................GC------------------------AACAGCAG---------CAGCA------GCAGCA............................................................................................................................................................................................................................................................................................................................................................	21	20	0.10	2	0	0	0	0	0	2
.....................................................................................................................................................................................................................................................................................................................................CAACAAC---------------AA---------CAGCAGCAAC................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	1
........................................................................................................................................................................................................................................................................GC------------------------AACAGCAG---------CAGCA------GCAGCAGC..........................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	1	0	0	0	0	0
.........................................................................................................................................................................................................................................................................C------------------------AACAGCAG---------CAGCA------GCAGCAGCA.........................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	0	0	1
.............................................................................................................................................................................................................................................................................................................................................................................AACATCA---G-------------------------------------------------------CAGCA---------------GCAACA.......................................................................................................................................................................................................................	19	20	0.05	1	1	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................GCA------GCAGCAGCAACAAC---------------AA---------CAGCA.....................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	1	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................AACATCA---G-------------------------------------------------------CAGCA---------------GCAAC........................................................................................................................................................................................................................	18	20	0.05	1	0	1	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................GCA------GCAGCAGCAACAAC---------------AA---------CA........................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	1	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................GCAGCAGCAACAAC---------------AA---------CAGCAGC...................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	1	0	0	0	0
.........................................................................................................................................................................................................................................................................................................G---------CAGCA------GCAGCAGCAACAAC---------------AA---------CAGC......................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	1	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................GCAG---------CAGCA------GCAGCAGCAA........................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	1	0	0
....................................................................................................................................................................................................................................................................................................................AGCA------GCAGCAGCAACAAC---------------AA---------CAG.......................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	1	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................GCAGCAGCAACAAC---------------AA---------CAGC......................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	1
.....................................................................................................................................................................................................................................................................GCAGC------------------------AACAGCAG---------CAGCA------GCAGCAG...........................................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	1	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................A---G-------------------------------------------------------CAGCA---------------GCAACAACAGCAGC...............................................................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0	0

droBip1

CAGCAT---------------------------------------------------------CAGAGT--------------------------------------------------------------C-----------------------AGG---------CCCAACT--GCAGCAGCATCA---CCAGCAACAGAATCAGCAACAAAAT---------------------CAGC------AACAA----CAGCAGCAGC---------------------------------------------A------GCATCAGCAAC-------------------------------------------------------------------------------------------------------------------------------AGCAGCAACATCAAC---AACA-GCCAATGCCGTTGCCACCAAATGACATATTATCCCGCGAAGATATAGAGGAGATAGATGCCT-TGTTTAATATGTCGCCGTTGCC--------------------------------------------------------------------------------------------------TTCACTGGGA	Size	Hit Count	Total Norm	Total
No Reads

droKik1

CACAAATGTGCCCGCCCA-------GGGA-----------------TC-GGGATCTAGC---TCAGGTTCCGGTTCCGGTTCGGGTTCCGTTTCCGCCTCCGGTTCGGGTTCGGGAT--------------C-----------------------AGG---------CC------------AG---------------------------------------------------------------GC----------CC------AGGG--------------------------------------------------------------------------------------------------------------------------CCACTCAAAGAGTCCGCCCCGAAACTCCATACGCGCCCTGCTGGCCAAGAGCTTCCGCTCGAAGAGCAGCTCCACCCAC--------------------------------------------------------------------------------------------------------------------------------------------GG------------------CGGC----CAGTCCACCTC-CAGTT-CGCCCAGCGCCGAGG	Size	Hit Count	Total Norm	Total
No Reads

droFic1

CACGAATGTGCCCGCCTC-------GG---------------------------------------GCTC------------CG------------------------------CATCCGCC---CAGGC----------------------------------------------GGTGCACCACCA---CCTG------------------CAGCAGCAGCAGCAGCATCAG---CAGC------ACCAC----GCTCCGCAGCAGGG--------------------------------------------------------------------------------------------------------------------------ACACTCGAAGAGTCCGCCGAGAAACTCCATACGCGCTCTGCTGGCGAAGAGCTTCCGCTCGAAGAGCAGCAGCAACCAC--------------------------------------------------------------------------------------------------------------------------------------------GG------------------CGGC----CAGTCCACCTC-GAGTT-CGCCGAGCGCCGAGG	Size	Hit Count	Total Norm	Total
No Reads

droEle1

CACGAATGTGCCAC----CGGCCCAGGGA-----------------TC-GGC---TGGCTCCTCCAGTTC------------GGGATCTGCATCAGGATCGGGATCGG------GATC---------GGGACA-----------------AGGGCATG---------GACATGGCC-----AG------------GGACAC----------------------------------------------------------C------AGGG--------------------------------------------------------------------------------------------------------------------------CCACTCGAAGAGTCCGCCGAGGAACTCGATACGCGCCCTGCTGGCCAAGAGTTTCCGCTCGAAGAGCAGCCACACCCAT-----------GG------------------------------------------------------------------------------------------------------------------------------AGG------------------CGGT----CAGTCCACCTC-CAGTT-CGCCCAGTGCCGAGG	Size	Hit Count	Total Norm	Total
No Reads

droRho1

CACGAACGTGCCGC----CGGCCCAGGGA-----------------TC-GG------GCTCCTCCAGCTC------------GG------------------------------GATCGGGA---CAGGGGCA-----------------GGGACAGG---------GACATGGCC-----AG------------GCCCAA----------------------------------------------------------C------AGGG--------------------------------------------------------------------------------------------------------------------------CCACTCGAAGAGCCCGCCGAGGAACTCCATACGCGCCCTGCTGGCCAAGAGCTTCCGCTCGAAGAGCAGCAGCACCCAC--------AACCA------------------------------------------------------------------------------------------------------------------------------GGG------------------TGGC----CAGTCCACCTC-CAGTT-CGCCCAGTGCCGAGG	Size	Hit Count	Total Norm	Total
No Reads

droBia1

CACGAATGTGCCCG----CTGCCCAGGGA-----------------TC-GA------GC---TCGAGTTC------------CG------------------------------GATCAGGAGGTCAGGGTC-----------------------AG--------------------------------------------------------------------------------CAGGGACAGCA----------GC------AAGT--------------------------------------------------------------------------------------------------------------------------CCACTCGAAGAGTCCGCCACGGAACTCGATACGCGCCCTGCTGGCCAAAAGCTTTCGCTCGAAGAGCAGCACCACCCAT-----------CA------------------------------------------------------------------------------------------------------------------------------TGG------------------TGGC----CAGTCCACCTC-CAGTT-CGCCAAGCGCCGAGG	Size	Hit Count	Total Norm	Total
No Reads

droTak1

CACGAATGTGCCAG----CCGCCCAAGGA-----G-GATCCGTT--TC-GG------GT---ACGAGTTC------------CG------------------------------GATCTGGA-----------------------------------G---------TCCAA--------------------------------------CAGCAG---------------------CAG------CA----------GT------CGGG--------------------------------------------------------------------------------------------------------------------------TCACTCGAAGAGTCCGCCACGCAACTCGATACGCGCCCTGCTGGCCAAGAGCTTCCGCTCGAAGAGCAGCAGCCATCACCATCACA-----------------------------------------------------------------------------------------------------------------------GCGGTGGTGGTGGTGG------------------TGGT----CAGTCCACCTC-CAGTT-CGCCGAGTGCCGAGG	Size	Hit Count	Total Norm	Total
No Reads

droEug1

CACGAATGTGCCAG----CTGCCCAGGGT-----------------TC-GA------GT---TCCAGTTC------------CG------------------------------GATCTGTT---CAGGGTC-----------------------AGG---------CCCATCA-----------------------TCAT----------------------------------------------------------C------AGGG--------------------------------------------------------------------------------------------------------------------------CCATTCGAAGAGTCCGCCAAGGAACTCGATACGCGCCCTGCTGGCCAAGAGTTTCCGTTCGAAGAGCAGCACCAATCAT-----------GG------------------------------------------------------------------------------------------------------------------------------TGG------------------TGGT----CAATCCACTTC-AAGTT-CGCCCAGTGCCGAGG	Size	Hit Count	Total Norm	Total
No Reads

dm3

CAGGCCCATCACTTG---CATCCCAGTCA-----------------CG-GA------CACTCGCCATC---------------------------------------------------------------------------------------------------------------------------------GCAGCAGCAGCAACAGCAG---------------------CAG---------CAA----CAGCAG---------------------------------------------CAACA------GCAGCAGCAACAGG--CGGCTGCAGC---A-CAACAACAATT--------------------------------GCTGGTGAAAAGCGGCTCAAT------CACCCATGGAACACCGGCCAATAGTGCCCAGCAACAGATTAT----------CGTTC----------------------------------------------------------------------------------------------------ATGCACC----------------AGCGACGG---CAG----------CAG-----CAGC-----ACCCTCCTCCCTGCTCAGTCCCAAGTTCGATG	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
...................ATCCCAGTCA-----------------CG-GA------CACTCGCC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................CCAGTCA-----------------CG-GA------CACTCGCCATC---------------------------------------------------------------------------------------------------------------------------------GCAGC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................AGG--CGGCTGCAGC---A-CAACAAC............................................................................................................................................................................................................................................................................................................................	21	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AG-----CAGC-----ACCCTCCTCCCTGCTCAGTCC...........	27	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCCCTGCTCAGTCCCAAGTTC....	21	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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...........................................................................................................................................................................................................GCAGCAACAGCAG---------------------CAG---------CAA----CAGCAG---------------------------------------------CA...........................................................................................................................................................................................................................................................................................................................................................................	27	18	0.06	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................ACA------GCAGCAGCAACAGG--CC................................................................................................................................................................................................................................................................................................................................................	19	19	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................GCAGCAACAGCAG---------------------CAG---------CAA----CAGCAG---------------------------------------------C............................................................................................................................................................................................................................................................................................................................................................................	26	19	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................AG---------------------CAG---------CAA----CAGCAG---------------------------------------------CAACA------GCA...............................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................ACAGCAG---------------------CAG---------CAA----CAGCAG---------------------------------------------CA...........................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................AGCAGCAGCAACAGCAG---------------------CAG---------C......................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0

droSim2

GCCCAC---GCGGGT-------------GCAAGGTCAGCCTGGCCA-GA--------------------------------------------------------------------------------AT-----------------------CAGTCGCTGA-----------------------------------------------------------------------------------------------------------ACGGTAGTGGAGGCAGTGCAGCAGCGGCAGCGGCCGCGGCAGCAGCGGCAGC------GCAACAG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCGCGCCAGGATATGTACCAGATGAACGCGCCCAATGGATACATGCCCAATGGCTACATGATGCACGCGGATCCGGCCGGAGC------------------GG------------------CAGCCTACCAGAC---CTCCTACAT-GGGCCAGCACTACGC	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
...............................................................................................................................................................................................................................................................................ACGGTAGTGGAGGCAGTGCAGC...........................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0

droSec2

GCCCAC---GCGGGT-------------GCAAGGTCAGCCTGGCCA-GA--------------------------------------------------------------------------------AC-----------------------CAGTCGCTAA-----------------------------------------------------------------------------------------------------------ACGGTAGTGGAGGCAGTGCAGCAGCGGCAGCAGCGGCGGCAGCAGCGGCAGC------GCAACAG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCGCGCCAGGATATGTACCAGATGAACGCGCCCAATGGATACATGCCCAATGGCTACATGATGCACGCGGATCCGGCCGGAGC------------------GG------------------CAGCCTACCAGAC---CTCCTACAT-GGGCCAGCACTACGC	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGCTACATGATGCACGCG.............................................................................................	19	1	1.00	1	0	0	1	0
............................................................................................................................................................................................................................................................................................CAGTGCAGCAGCGGCAGCAGCGGCGGCA........................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	1	0
....................................................................................................................................................................................................................................................................................................CAGCGGCAGCAGCGGCGGCAG.......................................................................................................................................................................................................................................................................................................................................................................	21	3	0.33	1	0	0	1	0
..........................................................................................................................................................................................................................................................................................................CAGCAGCGGCGGCAGCAGCG..................................................................................................................................................................................................................................................................................................................................................................	20	6	0.17	1	0	0	0	1

droYak3

CTGGCAAGAGCCATTACC-------AGAA-----------------TC-----------------------------------------------------------------------------------------------------------AGGCGCACCATGCCGGTCACC-----AAAATCATCACCAGCATCAG------------CAG---------------------CAC---------CAC----CAGCAGCATC------------------------AACAGCAC---------CACCA------CCAGCAGCAACAGC---------------AC---------CATCGGGACTATCA---C-------------------------------------------------------CATGGCCACGGGCGCCAGTATGGA------------------------------------------------------------------------------------------------------------------------CACCACTCGCATCGCGACTACAGA-------------G------------------ATGG----CA-GCGACGAC-GTCGG-CGGCG-GGTCCGCGG	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCATCGCGACTACAGA-------------G------------------ATGG----CA-GC............................	26	1	8.00	8	0	0	0	0	0	0	0	0	0	0	8
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCCAGTATGGA------------------------------------------------------------------------------------------------------------------------CACCACTCGCATCGC..................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................AGCAGCATC------------------------AACAGCAC---------CACC.........................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTACAGA-------------G------------------ATGG----CA-GCGAC.........................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTACAGA-------------G------------------ATGG----CA-GCGACGAC-GTC..................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGGA------------------------------------------------------------------------------------------------------------------------CACCACTCGCATCGCGACC..............................................................................	24	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-GCGACGAC-GTCGG-CGGCG-GGTCCGCGG	28	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................CGGGACTATCA---C-------------------------------------------------------CATGGCCACGG......................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
......AGAGCCATTACC-------AGAA-----------------TC-----------------------------------------------------------------------------------------------------------AGGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................ATCAG------------CAG---------------------CAC---------CAC----CAGCA...........................................................................................................................................................................................................................................................................................................................................................................................................................	19	5	0.20	1	0	1	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................AG------------CAG---------------------CAC---------CAC----CAGCAGCA........................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0

droEre2

AATGCGCCAGCGGGAACA-------GGA------G------------------------------------------------------------------------------------------------CAGCAGGAGAACATGGTCAAGATCAAGCA--GCACGCA-----------------CG---CCAG------------------CAGCAGCAGCAGCAGCAACAGCAGCAT---------CAC----CAGCAGCAGC---------------------------------------------A------GCAACACCACCAGG--CC----CAGC---AGCAGCAGCGATT-----------------------------------------------CCTGGGCCAC------------CAGCAG---------------------------------------------GCGCTGTCGCCGCATCCACATCGTTTGT-------------------------------------------------------------------------------------------------CG---TCC------------------TCGT----CG-ACGCCACC-AGCTT-TGCAGCACGCGCTGC	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
.....................................................................................................................................................................................................................................AACAGCAGCAT---------CAC----CAGCA...........................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	1	0
..........................................................................................................................................................................................................................................CAGCAT---------CAC----CAGCAGCAGC---------------------------------------------A------GC................................................................................................................................................................................................................................................................................................................................................................	22	8	0.13	1	0	0	0	0	1	0	0
..........................................................................................................................................................................................CG---CCAG------------------CAGCAGCAGCAGCAGCA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	9	0.11	1	0	1	0	0	0	0	0
.............................................................................................................................................................................................................................GCAGCAGCAACAGCAGCAT---------C......................................................................................................................................................................................................................................................................................................................................................................................................................................	20	15	0.07	1	0	1	0	0	0	0	0
...........................................................................................................................................................................................................................................AGCAT---------CAC----CAGCAGCAGC---------------------------------------------A------GG................................................................................................................................................................................................................................................................................................................................................................	21	17	0.06	1	0	0	0	0	1	0	0
..............................................................................................................................................................................................................................................AT---------CAC----CAGCAGCAGC---------------------------------------------A------GC................................................................................................................................................................................................................................................................................................................................................................	18	20	0.05	1	0	1	0	0	0	0	0

dgr_160

scaffold_14853:5277886-5278036 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-35.4	-34.9	-34.7