dgr_143

CDS [Dgri\GH24562-cds]; exon [dgri_GLEANR_9198:8]; exon [dgri_GLEANR_9198:9]; CDS [Dgri\GH24562-cds]; intron [Dgri\GH24562-in]

Name	Class	Family	Strand
(CAG)n	Simple_repeat	Simple_repeat	+

##################################################---------------------------------------------------------------------------------------------------------################################################## TGTCGCCGGCTAGTGCAGCCAATGCCAGTTCCGGCTGCTCATCGCTCAATGTTGGCAGTGTCCTTGCCAGCGCTTTGACCAACAGCACGGATCAACAGCAGCAGCAGCAGCTGTTGTCCTCCAGCCAGCTGCAGCAGCAGCAGCAGCAACAACAGAAGCCGCCGTCAGCCGAGTCGTTCATACCGCTTGTGGAGCTGAATGATGA ************************************************((((((((.....)))))))).............((..(((.(((((((.((....)).))))))))))....))..(((((.((....)).)))))........************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M041 female body	V109 male body
................AGCCAATGCCAGTTCCGGCTG........................................................................................................................................................................	21	0	1	1.00	1	1	0
..........................................................................................................................................................GAAGCCGCCGTCAGCCGAGTCGTT...........................	24	0	1	1.00	1	1	0
..................................................................................CAGCTCGGATCAACAGCCG........................................................................................................	19	2	4	0.25	1	0	1
...................................................................................AGCGCGGGTCAACGGCAGC.......................................................................................................	19	3	20	0.05	1	0	1

ACAGCGGCCGATCACGTCGGTTACGGTCAAGGCCGACGAGTAGCGAGTTACAACCGTCACAGGAACGGTCGCGAAACTGGTTGTCGTGCCTAGTTGTCGTCGTCGTCGTCGACAACAGGAGGTCGGTCGACGTCGTCGTCGTCGTCGTTGTTGTCTTCGGCGGCAGTCGGCTCAGCAAGTATGGCGAACACCTCGACTTACTACT ************************************************((((((((.....)))))))).............((..(((.(((((((.((....)).))))))))))....))..(((((.((....)).)))))........************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M041 female body	V109 male body
....................................................ACCGTTACAGGAACTGTCG......................................................................................................................................	19	2	5	0.20	1	1	0
.............................................................................TGGTTGTCATGCCGAGGTG.............................................................................................................	19	3	9	0.11	1	0	1

Species	Coordinate	ID	Alignment
droGri2	scaffold_14853:1377501-1377705 +	dgr_143	TGTC-GCCGGCTAG----------------------------TGC---AGCCAATGCCAG------------------------------T----------------------------TCCGG---------------------CTGCTCATCG------CT------------------------CAA------------------------------TGTTGGCAGTGTCC---TTGCCA-------------------------GCG-----CTTTGACCAACA---GCA----------------------------------------------------------------C---------------------------GGA--TCAACAGCAGCAGCAGCA---------------------------------------GCTGT---------------------------------------------------TGTCCTCCAG-------------------------------C-CAGCTGCAGC---------------------------------------------AGCAGCA-------------------------GCAGCAAC---------------------------------------------------------A----------ACAGAAGCCG---------------------------------------------------------------CCGTCAGCCGA---GT---CGTTC----ATACCGC-TTGTGGAGCTG-AA--------------------TGATGA
droVir3	scaffold_12970:8430476-8430688 +		TGTT-GCTGGTGCT--------------------------GGTGT---T------G-------------------------------CT------------GGTGCTGGT---------GCTGG----------------------------------------------------TGCTGGTGC--TGG------------------------------TGTTGGCGGTGCCCACTTTGT-G----------------GA--TGCGCAAACTTCAACATCGCCGCTGGCAGCA----------------------------------------------------------------------------------------------------AC---AGCAGCAGCAGC---------AACAAC---------------------AGCAGCAGCA------------GCAGCAG---------G-----------------------------------------------------------------AGCAGCAGCAGCAGCAGCAGGAGCAGC---------------------------------AGCG-GGAGGCGGCGGGGCAAC---------------------------------------------------------------------------------------------------------------------A---------------------------------------------------------------ACGA------TTGTGA-CAGTGGC---------------AGATAT
droMoj3	scaffold_6540:17170078-17170267 -		GCAG-C-----AA------------------------------------------GCCAG--------CGGTGGCCGCCAAT----------------------------TTCTC-------------------A------------------------C---------------------------AGA------------------------------AGTTGGCCGC----------------------------CTCAGTGCAACAG---------------------CA----------------------------------------------------------------------------------------------------GC---AGCAGCAGCAGC---------ATCAGC---------------------AGCAGCAACA------------ACAGCAGCAGCAACAGCA------AC--------------ACC------------------------------------------------------AGCAGCAGCAGCAGCAACAACAACAGCAGCAGCAGC------------A--------------------------------------------------------------------------------------------------G----------------------C-TGCTGCATAGCCA---------------------------------------------------------------ACTCTCAGCGGAGCTG-CAG--------------------GAAGA
droWil2	scf2_1100000004590:2373389-2373562 +		GTCA-GCCAGTCAGCCAGTCAGCCAGCCATCTAGCCAGCCAGTTT---T--------------------------------------------------------------------------------------------------------------------------------------------------------------CCTAA--------TGCTTTCA-----C---TTGCCA--------------------------------------------------------------------------------------------GCCA-------------------------------------------------------AC---AACAGCAGCAGC---------AGCAGC------------------AGCAGCAGCAGCA------------G--------------------------------------------------------------------------------CAGCAGCAGCAGC---------------------------------------AGCAGCAGC---AG----------------------------------------------------------------------------------CAAATC------TT---GGTCG---------------------------------------------------------------------------TTGTCGTTGTCT----GCATCGT-CTTTGGGGCCC-------------------------GATA
dp5	XL_group1a:3729834-3730014 -		TGTT-GACGGCGGG----------------------------TA--------------------------------GCAA-CAACAACAAC----------------------------AACAA---------------------------CTCCTCCTCGAA------------------------------------------------------------CA------------------------------------------------------------------GCAACAACAGTAACAACAA------CAAC------------CCGAACA-------------------------------------------------------AC---------------------------------------------------------A---------------ACAACAA------CAGCA------AC--------------AGCA--TTGT-TGCAG----------------------------------------CAGCGGCGGCAGCAGCAGCAGC---------------AGCGGCAGC---AG----------------------------------------------------------------------------------CACATC----------------------------------------------------------------------------------TCAG---------------CAGCAG-CTCCCC-CGGTGGGGC----A------------------GGTGGTGC
droPer2	scaffold_2439:1059-1252 -		TGGC-GTCAGTTGC------------------------------------------------------------------------------------------------------------------AGCGCCGC---------------------------------------------------CAACTGCGGCGGCTGTACATCGTGACAC------TCCAACAGTGCCG------------------------------------------------------------------------------------------ATGGCAGCA-------------------------------------------------------------AC---AAC---------------------AGCAACAACAGCAGC---------AACAGCAGCG------------GCA---------------------AC------------------------------------------AGCGGCGA-----CGGCAGCTGC------AGC---------------------------------AGCAGCAGCAGCAA-------------CAACTTCA-------------------------------------------------------------------ACAACAACAA----------------------CA------------------CCA---------------------------------GAGATATTGATGCCG----ACATTGC-CATT------------G--------------------GCA
droAna3	scaffold_13337:5830206-5830399 -		GCTT-C------------------------------------TGC---AACTATTGCTGGTTAGCT----------GCTAGTTGCTGCTGCTGC----------------------------------------------------------------------------------TGCTGCTGC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CACGGTTTGTTGCTTCACTGATTACGCGCAATGCAGC---AGTAGCAGTAGC---------AGTGGC---------------------AGAGGAG---------------------------------------AC------------------------------------------AG------AGGAGCCACTGCA---------------------------------------------------------A-------------CAACTGCA-------------------------------------------------------------------ACAA-AACAG----------------------CA------------------GCT---------------------------------GAGAGTT---CAGTTGCGA-AACCG----GCGAAGCGC--GA------------------CTGTTGC
droBip1	scf7180000396569:751171-751377 +		CTTC-GCCCAGGAGCATGCCAAT--GCCACCTTGTCG--CAGTAT---T----------------------------------------------------------------------TCCAG---------------------CAACTCAACT--CCCAGGTGGCGGCGGC------------------------------------------------------T------------------------------------------G-----TCACCAACAGCGGCAGC-----------------------------------------------------------------------------------------------A--GCAAC---AGCAGCAGCAAC---------AACGGC---------------------AGCGGTGGCA------------ACAACAA---------CA------AC--------------AACAAC----------------------AACAACAA--------------------CAACAACAACAGCGGCAACAACAGCAGCAGCGGCAAC------------A-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCG----A--CAGCGG-CAACG-------------------ACGG
droKik1	scf7180000302470:1707512-1707749 -		CGTC-CTCGGTGGG----------------------------AGC---AGCCACAG-------------------------------CT-------------------------------------------CCA------------------------C---------------------------TGACTCTGGCGGC---------------------------------------------------------------------------------------------AGCTGATGAATCCACTTTGGCCAATGT------------CCAGGCAATGCTTTCAACGGTGGCCAA---------------------------GTT-----GCAGCAGCAGCAGGA------------------------------------------GTT---------------------------------------GCCTGTGGAGTTGAACTCCAG-------------------------------C-GAGATGTATC---------------------------------------------AGCATGT-------------------------GCAGCACGATTGGAACTTTGGTGACATCAAGCTAAGCAGCACGCAGTCCACGGTAGATCAGCAGCA---------------------------------------------------------------------------------------------------------------------------AAACCTG-AA--------------------TCATGA
droFic1	scf7180000454050:283489-283700 -		CGTG-GCCGCCTCG----------------------------CA--------------------------------GCAC-CAGCAGCAGCACCAGCAGAT---------GCCCCACT------------------------------------------ATG------------------------CGG------------------------------TGTCGGCGGTGCAC---ATGC-A-------------------------GAG-----CCACCACCATCA---GCA----------------------------------------------------------------------------------------------------GCAGCAGCAGCAG--GC---------GGCGGC---------------------AGCGGTGGCG------------GCAGCG------------------------------------------------------------------------CAGGCGCAGCA---CC------------------------------------------ACC-------------------------AGCAGCAGC---------------------------------------------------------A----------ACAGCAGGCGGCGGCGGCGGCAGCGGC-------------------------------------------------------------C---CAGGC----GCACCAC-CAG--CAGCAG-CAGCA-----------------CCA-TG
droEle1	scf7180000491214:2316087-2316276 -		TCAG-C-----CAT----------------------------TTC---ACCCAATCCCAG----------------------------------------------------------------------CATCGGCAGTGCGGGCAACATGACGCCCACCA------------------------------------------------------------GCA------------------------------------------------------------------GCA----------------------------------------------------------------------------------------------------GC---AGCAGCAGCAGC---------AACAGC---------------------AGCAGCAACA------------GCAGCAG------CAACAGCAGCAAC------------------------------------------AT--------------------------CAGCAGCAACACCAGCAACAGTAACAGGAGCAGCATC------------A--------------------------------------------------------------------------------------------------T----------------------T-GCC-----------------AGTCCGC--TGA--------------------------------------------GCAGTCTGGGCAGTGG-CAGCA--------------------CCA
droRho1	scf7180000777830:302-463 +		CCA------GCAAG----------------------------CGC---AGCGGCAT------------------------------------------------------TCCTCAGC-------------A-------------------------TGCGG---------------------------G------------------------------TGGTGCCAGTGTGC---TTGCCA-------------------------------------------------------------------------CCGC------------TCTAACAACACC---------------CACGACTAGCCAC--------------TCG-----T---------------------------------------------------------------------------------------------------C--------------------------------------------------------CTCTGCA---------------------------------------------------------G-------------CCACTTCA-------------------------------------------------------------------GCGG-AACAG----------------------CA------------------T--------------------------GCGTCAGTGGA---TC---CTGTC----ATTCCGC-TGGTGGAGCTCACGA-------------------CGATGA
droBia1	scf7180000302428:457433-457615 -		GCAG-C-----AG-------------------------------C-------AACACCAG------------------------------C----------------------------GACAGTTGCTGCAGCAC---------------------------------------------------CAGCATTCGCATCCGCCCTTCCAAGCCCCCCAGCAACA------------------------------------------------------------------CCA------------------------GCCCGCACA-------------------------------------------------------------------GC---AGC------------------AACACC---------------------AGTCGTTGCA------------GCAGCAG------CAGCA--------------------------------------------------------------------------------------GCAGC-------------------------------------------------------AGCATCAGC---------------------------------------------------------A----------ACAGCA----------------------------------------GCA------------------------GCAACACTTGC---AC---CACTC----GCACCAC-CCA--CCGCTG-CAGCA--------------------CCA
droTak1	scf7180000415873:295201-295438 -		TATT-C-TGGCCGG----------------------------TGC---AGCGGCAG-------------------------------CT------------TC-------------------------GGCG------------------------------------GCGGCAGCTGCAGCAGCGGCGGCTCTGGCGGCCG------------------------------CCTCCTCGG-CCAGCAGTCCGTCGGACTCGGAGCACCATCATCTCCATCACCAGCA----------------------------------------------------------------------------------------------------------GC---AGC---------------AGCAACACC---------------------ACCAGCA---------------GCAGCAG------CAGCA------AC--------------ACCAGC----------------------AG-----------CAACAGCAACACC------------------------AGCAGCAGCAGCAAC---------ATCA-GCAGGCTGCCCTGCAGC---------------------------------------------------------------------------------------------------------------------A---------------------------------------------------------------ATACATCGTGCAACAG-CAGCA-------------------ATTG
droEug1	scf7180000409759:960516-960743 -		TCTCTGCCTATTAC-------------------------------------CACAGCCAGC----------------------------------AG--AC---------GGCC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CA-------------------------------------------------------------------GC---AGCAACTCC---------------AGCAACAGCAGCAGCAACAACAACAGCAGCAACA------------G---------------CA------AC--------------AGCA--CTCTCTGCAGCAGCAACAGTTC--------GCA---CT------------------CAGCAGC------------------------------------AG-------------CAATCTC-------------------------------------------------------------------------------AATGGCCAGCAGCAACAGCAAC-ACC-----------------AGCTCACCTTGAACAATCGCACCAAGAGCCAGCAGA---AT---TTCCAGCACACCCTGC-GCATGCAGC----A------------------GATGATGG
dm3	chrX:6713503-6713685 -		GTGC-A-------------------------------------------ACCAATGCCGCC----------------------------------GA--GG---------TGCTCGGCTT-C------AGCACTGT---------------------------------------------------CAACTCGGACATCTT--------------------------------------------------------CTCA-------------------------------------------------------------------------------------------------------------------------------GCGCAAC---TGCAGCAGCAAC---------AACAAC---------------------AGCAGCAACAGCACGCCGCCCAGCAGCAG------CAGCA--------------------------------------------------------------------------AC------------------AAC-------------------------------------------------AGCAGCAGC---------------------------------------------------------A----------ACATCA----------------------------------------CCA---------------------------------GG------------C----ACATCCA---------CAG-CAGGTTCAGATTATTCAGCAGGGCGCTG
droSim2	2r:11094220-11094446 +		CATC-GTCGGCCGG----------------------------AGC---ACCGACGG-------------------------------CT-------------------------------------------------------------------CCACTG---------------------------ACGCTGGCA---------------------------------------------------------------------------------------------GCAGCAGCTGAAACCACGTTGGCAAATGT------------CCAAGCCATGCTTTCAACTGTGGCCAA---------------------------GTT--ACAGCAGCAGCAGCAGGA------------------------------------------GTT---------------------------------------ACCCGTGGAGTTGAACTCCAA-------------------------------T-GAAATGTACC---------------------------------------------AGCATGT-------------------------GCAGCACGATTGGAACTTTGGTGACATTAAGTTAAGCAGTTCGCAGTC-----------------------------------------------------------------------------------------------------------------------------------------GAGCGGAGA-T-CAGCA-------------------GCGA
droSec2	scaffold_21:173796-173985 -		CGCT-GCCCGTTAC----------------------------CGT---GGCAACA-----------------------------------------------------------------------------T------------------TGCCCACTCAGGCGGCGACAGCAGCAGCAGCAACAGCTGC-------------GA-----------------------------------------------------------------------------------------------------------------------------------------------TTTTGGCCAC---------------------------TCA-----CC------------------------------------------------------AGCAACA------------GCAGCAGCAGCAA---TTGCAGCAGC------------------------------------------ATCTGCATTTG------------------AGCAGCAGCAACAACAACAACAACGGCGGCAGCA----------------------------------------------------------------------------------------------------CAC-----------------------------------------ACGGCCAACA------------------------------------------------------------GC---ATACGCAC-AG-CAACA-------------------ACAA
droYak3	3R:2880950-2881164 -		TGGG-GGCGGCTGC----------------------------CAC---GCCCACGGCCAGCCAGTTGGCGGT--------------------------------------------------------------------------------GGCCTCCCAAGCGGCGATGGCAGCGGCAGCCGCGGCGGC-------------CTTTAA------------------------------------------------CGCA-------------------------------------------------------------------------------------------------------------------------------GCGCAAC---AGCAGCAGCAACAGCAGCAGCAACACC---------------------AGCACCA---------------GCAGCAG------CAGCA------AC--------------ACCAGC----------------------AGTCGCAA--------------------CAGCAGCAACAGCAGCAGCAGTCGCAGC---------------------AG----------------------------------------------------------------------------------C---------------------------------------------------AACTCC--AT------------------------------------------------------GCC-CTCGC------G-CAGCA-------------------GCAC
droEre2	scaffold_4845:14496932-14497097 +		CAAC-A--AGCTGG----------------------------TGCAACAGTCGCAG-------------------------------TT-------------------------------------------CTA---------------TATCAACCAC------------------------------------------------------------AATCAGCAGTACCC------------------------------------------------------------------------------------------ACA-------------------------------------------------------------------GC---AGC---------------AACATCACC---------------------AGCAGCA---------------GCATCAA------CAGCA------GC--------------ACCAGC----------------------ATCAGTAT--------------------CAGCAGCAGCAGCAGCATCAGCATCAGCACCAGCATC------------------------------------------------------------------------------------------------------------------------------------------------------------AG------------------------------------------------------CCT-GCAAC---GCAG-CAGCA-------------------TCAG

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droGri2

TGTC-GCCGGCTAG----------------------------TGC---AGCCAATGCCAG------------------------------T----------------------------TCCGG---------------------CTGCTCATCG------CT------------------------CAA------------------------------TGTTGGCAGTGTCC---TTGCCA-------------------------GCG-----CTTTGACCAACA---GCA----------------------------------------------------------------C---------------------------GGA--TCAACAGCAGCAGCAGCA---------------------------------------GCTGT---------------------------------------------------TGTCCTCCAG-------------------------------C-CAGCTGCAGC---------------------------------------------AGCAGCA-------------------------GCAGCAAC---------------------------------------------------------A----------ACAGAAGCCG---------------------------------------------------------------CCGTCAGCCGA---GT---CGTTC----ATACCGC-TTGTGGAGCTG-AA--------------------TGATGA	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
................................................AGCCAATGCCAG------------------------------T----------------------------TCCGG---------------------CTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGCCG---------------------------------------------------------------CCGTCAGCCGA---GT---CGTT.....................................................	24	1	1.00	1	1	0

droVir3

TGTT-GCTGGTGCT--------------------------GGTGT---T------G-------------------------------CT------------GGTGCTGGT---------GCTGG----------------------------------------------------TGCTGGTGC--TGG------------------------------TGTTGGCGGTGCCCACTTTGT-G----------------GA--TGCGCAAACTTCAACATCGCCGCTGGCAGCA----------------------------------------------------------------------------------------------------AC---AGCAGCAGCAGC---------AACAAC---------------------AGCAGCAGCA------------GCAGCAG---------G-----------------------------------------------------------------AGCAGCAGCAGCAGCAGCAGGAGCAGC---------------------------------AGCG-GGAGGCGGCGGGGCAAC---------------------------------------------------------------------------------------------------------------------A---------------------------------------------------------------ACGA------TTGTGA-CAGTGGC---------------AGATAT	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGC---------------------------------AGCG-GGAGGCGGCGGGGC.....................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........GTGCT--------------------------GGTGT---T------G-------------------------------CT------------GGTGCT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................TCGCCGCTGGCAGCA----------------------------------------------------------------------------------------------------AC---AGCAGT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........GTGCT--------------------------GGTGT---T------G-------------------------------CT------------GGTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................CACTTTGT-G----------------GA--TGCGCAAACTTCAA......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAC---------------------------------------------------------------------------------------------------------------------A---------------------------------------------------------------ACGA------TTGTGA-CAGTGGC---------------......	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................CTGG----------------------------------------------------TGCTGGTGC--TGG------------------------------TGTTG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
............CT--------------------------GGTGT---T------G-------------------------------CT------------GGTGCTGGT---------G...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	2	0.50	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................ACAAC---------------------AGCAGCAGCA------------GCAGCA................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.25	5	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................GT---T------G-------------------------------CT------------GGTGCTGGT---------GCTG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	5	0.20	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGC---------AACAAC---------------------AGCAGCAGCA------------......................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.15	3	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................GCAGC---------AACAAC---------------------AGCAGCAGCA------------GCA...................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.15	3	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............CT--------------------------GGTGT---T------G-------------------------------CT------------GGTGCTT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	7	0.14	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................GT---T------G-------------------------------CT------------GGTGCTGGT---------GCT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	8	0.13	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGCAGCAGGAGCAGC---------------------------------........................................................................................................................................................................................................................................................	19	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2
....................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGC---------AACAAC---------------------AGCAG.......................................................................................................................................................................................................................................................................................................................................................................................................................	18	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCA------------GCAGCAG---------G-----------------------------------------------------------------AGCAGC..............................................................................................................................................................................................................................................................................................................	19	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2
.........................................................................................................................................................................................................................................................................................................................................................................................................................GC---------AACAAC---------------------AGCAGCAGCA------------GCAGCA................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.10	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................A----------------------------------------------------------------------------------------------------AC---AGCAGCAGCAGC---------AACAAC---------------------............................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.10	2	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................AGCA----------------------------------------------------------------------------------------------------AC---AGCAGCAGCAGC---------AACA...................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.10	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................AGC---------AACAAC---------------------AGCAGCAGCA------------......................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.10	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................C---------AACAAC---------------------AGCAGCAGCA------------GCAGCA................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.10	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................GT---------GCTGG----------------------------------------------------TGCTGGTGC--TGG------------------------------TG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	18	0.06	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................GTGCTGGT---------GCTGG----------------------------------------------------TGCTGGTG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	18	0.06	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCA------------GCAGCAG---------G-----------------------------------------------------------------AGCAGCAGCAGCA.......................................................................................................................................................................................................................................................................................................	24	19	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................AACAAC---------------------AGCAGCAGCA------------GCAGC.................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAGCAGGAGCAGC---------------------------------A.......................................................................................................................................................................................................................................................	18	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGC---------AACAAC---------------------AGCAGCAGC...................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAGCAGC---------AACAAC---------------------AGC.........................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AG---------G-----------------------------------------------------------------AGCAGCAGCAGCAGCAG...................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
................................................T------G-------------------------------CT------------GGTGCTGGT---------GCTGG----------------------------------------------------TGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAGCA------------GCAGCAG---------G-----------------------------------------------------------------AGC.................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAGC---------AACAAC---------------------AGC.........................................................................................................................................................................................................................................................................................................................................................................................................................	18	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAGCA------------GCAGCAG---------G-----------------------------------------------------------------AGCAGCA.............................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAG---------G-----------------------------------------------------------------AGCAGCAGCAGCAGC.....................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................A----------------------------------------------------------------------------------------------------AC---AGCAGCAGCAGC---------AACAAC---------------------AGC.........................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................CA----------------------------------------------------------------------------------------------------AC---AGCAGCAGCAGC---------AACAAC---------------------AGCA........................................................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCA------------GCAGCAG---------G-----------------------------------------------------------------AGCAG...............................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................AGCA----------------------------------------------------------------------------------------------------AC---AGCAGCAGCAGC---------A......................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................AGC---------AACAAC---------------------AGCAGCAGCA------------GCA...................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGC---------AACAAC---------------------AGCAGCAGCA------------GCAGCA................................................................................................................................................................................................................................................................................................................................................................................................	28	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGCA------------GCAGCAG---------G-----------------------------------------------------------------AGC.................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGC---------AACAAC---------------------AGCAGCAGCA------------GCAGC.................................................................................................................................................................................................................................................................................................................................................................................................	27	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAGCAGCAGGAGCAGC---------------------------------........................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAGCAGC---------AACAAC---------------------AGCAGCAGCA------------GC....................................................................................................................................................................................................................................................................................................................................................................................................	30	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAGCAGCAGCAGGAGCAGC---------------------------------A.......................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................CAAC---------------------AGCAGCAGCA------------GCAGC.................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................CA----------------------------------------------------------------------------------------------------AC---AGCAGCAGCAGC---------AACA...................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................GCAGCA----------------------------------------------------------------------------------------------------AC---AGCAGCAGCAGC---------AACA...................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAGCAGCAGCAGGAGC............................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAGCAGCAGCAGCAGGAGC............................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAGC---------AACAAC---------------------AGCAGCAGCA------------GC....................................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGC---------AACAAC---------------------AGCAGCAG....................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCA------------GCAGCAG---------G-----------------------------------------------------------------AGCAGCA.............................................................................................................................................................................................................................................................................................................	18	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................CAGCA----------------------------------------------------------------------------------------------------AC---AGCAGCAGCAGC---------AAC....................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................CA----------------------------------------------------------------------------------------------------AC---AGCAGCAGCAGC---------AACAAC---------------------AGCAGC......................................................................................................................................................................................................................................................................................................................................................................................................................	28	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................A------------GCAGCAG---------G-----------------------------------------------------------------AGCAGCAGCA..........................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCA------------GCAGCAG---------G-----------------------------------------------------------------AGCAGC..............................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................CAAC---------------------AGCAGCAGCA------------GCAGCAG---------......................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAG---------G-----------------------------------------------------------------AGCAGCAGCAGCAGC.....................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................GCAGC---------AACAAC---------------------AGCAGCAGCA------------......................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

GCAG-C-----AA------------------------------------------GCCAG--------CGGTGGCCGCCAAT----------------------------TTCTC-------------------A------------------------C---------------------------AGA------------------------------AGTTGGCCGC----------------------------CTCAGTGCAACAG---------------------CA----------------------------------------------------------------------------------------------------GC---AGCAGCAGCAGC---------ATCAGC---------------------AGCAGCAACA------------ACAGCAGCAGCAACAGCA------AC--------------ACC------------------------------------------------------AGCAGCAGCAGCAGCAACAACAACAGCAGCAGCAGC------------A--------------------------------------------------------------------------------------------------G----------------------C-TGCTGCATAGCCA---------------------------------------------------------------ACTCTCAGCGGAGCTG-CAG--------------------GAAGA	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCATAGCCA---------------------------------------------------------------ACTCTCAGCGGAGCTG-C...........................	26	1	1.00	1	1	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACA------------ACAGCAGCAGCAACAGCA------AC--------------ACC------------------------------------------------------.....................................................................................................................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCATAGCCA---------------------------------------------------------------ACTCTCAGCGGAGCT..............................	25	1	1.00	1	0	0	0	0	0	1
...............................................................................AAT----------------------------TTCTC-------------------A------------------------C---------------------------AGA------------------------------AGTTGGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAACAGCA------AC--------------ACC------------------------------------------------------AGCAGCAGC............................................................................................................................................................................................................................................................................................	26	2	0.50	1	0	0	0	0	1	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAGCAACAGCA------AC--------------ACC------------------------------------------------------AGCA.................................................................................................................................................................................................................................................................................................	25	2	0.50	1	1	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGCAGCAGCAACAGCA------AC--------------ACC------------------------------------------------------.....................................................................................................................................................................................................................................................................................................	23	3	0.33	1	0	0	0	0	1	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAACAGCA------AC--------------ACC------------------------------------------------------AGCAGCAGC............................................................................................................................................................................................................................................................................................	25	3	0.33	1	0	0	0	0	1	0
......................................................................................................................................................................................................................................................................................................................................................................................................................GCAGC---------ATCAGC---------------------AGCAGCAACA------------ACA...................................................................................................................................................................................................................................................................................................................................................................................................	24	4	0.25	1	1	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................GC---AGCAGCAGCAGC---------ATCAGC---------------------AGCAGCAA....................................................................................................................................................................................................................................................................................................................................................................................................................	28	4	0.25	1	1	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................A------------ACAGCAGCAGCAACAGCA------AC--------------AC............................................................................................................................................................................................................................................................................................................................................................	23	5	0.20	1	1	0	0	0	0	0
..........................................................................................................................................................................................................................................................................AACAG---------------------CA----------------------------------------------------------------------------------------------------GC---AGCAGCAGCAGC---------ATCAGC---------------------............................................................................................................................................................................................................................................................................................................................................................................................................................	27	8	0.13	1	1	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAACAGCAGCAGCAGC------------A--------------------------------------------------------------------------------------------------G----------------------C-.........................................................................................................................	20	20	0.10	2	0	0	0	0	2	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACAACAGCAGCAGC....................................................................................................................................................................................................................................................................	18	20	0.10	2	0	0	0	0	2	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCA------AC--------------ACC------------------------------------------------------AGCAGCAGCAGCAGCA.....................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	0	1	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCA------AC--------------ACC------------------------------------------------------AGCAGCAGCAGCAGC......................................................................................................................................................................................................................................................................................	24	20	0.05	1	1	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAACA------------ACAGCAGCAGCAACAGCA------..............................................................................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	0	0	0	0	1	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAACAACAACAGCAGCAGCA...................................................................................................................................................................................................................................................................	22	20	0.05	1	1	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGCAACAGCA------AC--------------ACC------------------------------------------------------.....................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	1	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGCAGCAACAACAACAGC..........................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	1	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACAACAGCAGCAGCA...................................................................................................................................................................................................................................................................	19	20	0.05	1	1	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAACA------------ACAGCAGCAGCA..........................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	1	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCA------AC--------------ACC------------------------------------------------------AGCAGCAGCAGCA........................................................................................................................................................................................................................................................................................	21	20	0.05	1	1	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAACA------------ACAGCAGCAGCAACA.......................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	1	0	0	0	0	0

droWil2

GTCA-GCCAGTCAGCCAGTCAGCCAGCCATCTAGCCAGCCAGTTT---T--------------------------------------------------------------------------------------------------------------------------------------------------------------CCTAA--------TGCTTTCA-----C---TTGCCA--------------------------------------------------------------------------------------------GCCA-------------------------------------------------------AC---AACAGCAGCAGC---------AGCAGC------------------AGCAGCAGCAGCA------------G--------------------------------------------------------------------------------CAGCAGCAGCAGC---------------------------------------AGCAGCAGC---AG----------------------------------------------------------------------------------CAAATC------TT---GGTCG---------------------------------------------------------------------------TTGTCGTTGTCT----GCATCGT-CTTTGGGGCCC-------------------------GATA	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
...............................................................................................................................................................................................................................................................................................................................................................................................................AACAGCAGCAGC---------AGCAGC------------------A..............................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.55	11	0	0	0	11	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................AGC------------------AGCAGCAGCAGCA------------G--------------------------------------------------------------------------------CA...................................................................................................................................................................................................................................................................................................................	19	20	0.30	6	0	0	0	6	0
...............................................................................................................................................................................................................................................................................................................................................................................................................AACAGCAGCAGC---------AGCAGC------------------AGCAGC.........................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	1	0
..........................................................................................................................................................................................................................................................................................................................................................................................................AC---AACAGCAGCAGC---------AGCAGC------------------...............................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	1
......................................................................................................................................................................................................................................................................................................................................................................................................................................CAGC------------------AGCAGCAGCAGCA------------G--------------------------------------------------------------------------------C....................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	1	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................AACAGCAGCAGC---------AGCAGC------------------AGCA...........................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	1
..........................................................................................................................................................................................................................................................................................................................................................................................................AC---AACAGCAGCAGC---------AGCAGC------------------AGCA...........................................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	1	0
...............................................................................................................................................................................................................................................................................................................................................................................................................AACAGCAGCAGC---------AGCAGC------------------AGCAGCA........................................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	1	0

dp5

TGTT-GACGGCGGG----------------------------TA--------------------------------GCAA-CAACAACAAC----------------------------AACAA---------------------------CTCCTCCTCGAA------------------------------------------------------------CA------------------------------------------------------------------GCAACAACAGTAACAACAA------CAAC------------CCGAACA-------------------------------------------------------AC---------------------------------------------------------A---------------ACAACAA------CAGCA------AC--------------AGCA--TTGT-TGCAG----------------------------------------CAGCGGCGGCAGCAGCAGCAGC---------------AGCGGCAGC---AG----------------------------------------------------------------------------------CACATC----------------------------------------------------------------------------------TCAG---------------CAGCAG-CTCCCC-CGGTGGGGC----A------------------GGTGGTGC	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
....................................................................................................................................................................................................................................................................................................................AA------CAAC------------CCGAACA-------------------------------------------------------AC---------------------------------------------------------A---------------ACAAC.................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	1	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGT-TGCAG----------------------------------------CAGCGGCGGC............................................................................................................................................................................................................................................................................................	18	3	0.67	2	0	2	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAG----------------------------------------CAGCGGCGGCAGCAGCAGC...................................................................................................................................................................................................................................................................................	23	12	0.08	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAGC---------------AGCGGCAGC---A....................................................................................................................................................................................................................................................	19	20	0.05	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AG----------------------------------------CAGCGGCGGCAGCAGC......................................................................................................................................................................................................................................................................................	18	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCGGCAGCAGCAGCAGC---------------AGC..............................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	1	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAG----------------------------------------CAGCGGCGGCAGCA........................................................................................................................................................................................................................................................................................	18	20	0.05	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGGCAGCAGCAGCAGC---------------AGCGGT...........................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	1	0	0	0

droPer2

TGGC-GTCAGTTGC------------------------------------------------------------------------------------------------------------------AGCGCCGC---------------------------------------------------CAACTGCGGCGGCTGTACATCGTGACAC------TCCAACAGTGCCG------------------------------------------------------------------------------------------ATGGCAGCA-------------------------------------------------------------AC---AAC---------------------AGCAACAACAGCAGC---------AACAGCAGCG------------GCA---------------------AC------------------------------------------AGCGGCGA-----CGGCAGCTGC------AGC---------------------------------AGCAGCAGCAGCAA-------------CAACTTCA-------------------------------------------------------------------ACAACAACAA----------------------CA------------------CCA---------------------------------GAGATATTGATGCCG----ACATTGC-CATT------------G--------------------GCA	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
...............................................................................................................................................................................................................CGTGACAC------TCCAACAGTGCCG------------------------------------------------------------------------------------------ATG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	4	1.75	7	0	7	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTTCA-------------------------------------------------------------------ACAACAACAA----------------------CA------------------CCA---------------------------------GAG................................................................	24	5	1.20	6	0	6	0	0	0	0
...............................................................................................................................................................................................................CGTGACAC------TCCAACAGTGCCG------------------------------------------------------------------------------------------ATGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	4	1.00	4	0	4	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTGATGCCG----ACATTGC-CATT------------G--------------------GCA	26	5	1.00	5	0	5	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTGATGCCG----ACATTGC-CATT------------G--------------------GC.	25	5	0.80	4	0	4	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTTCA-------------------------------------------------------------------ACAACAACAA----------------------CA------------------CCA---------------------------------GAGA...............................................................	25	5	0.60	3	0	3	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................TGGCAGCA-------------------------------------------------------------AC---AAC---------------------AGCAACAACAGC........................................................................................................................................................................................................................................................................................................................................................................................................................................	25	2	0.50	1	0	1	0	0	0	0
...............................................................................................................................................................................................................CGTGACAC------TCCAACAGTGCCG------------------------------------------------------------------------------------------A......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	4	0.50	2	0	2	0	0	0	0
...............................................................................................................................................................................................................CGTGACAC------TCCAACAGTGCCG------------------------------------------------------------------------------------------ATGGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	4	0.50	2	0	2	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTTCA-------------------------------------------------------------------ACAACAACAA----------------------CA------------------CC.....................................................................................................	20	5	0.40	2	0	2	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CA---------------------AC------------------------------------------AGCGGCGA-----CGGCAGC..............................................................................................................................................................................................................................................................................................................	19	5	0.40	2	0	0	2	0	0	0
..........................................................................................................................................................................................................TACATCGTGACAC------TCCAAC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	4	0.25	1	0	1	0	0	0	0
...............................................................................................................................................................................................................CGTGACAC------TCCAACAGTGCCG------------------------------------------------------------------------------------------ATGGCA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	4	0.25	1	0	1	0	0	0	0
................................................................................................................................................................................................................GTGACAC------TCCAACAGTGCCG------------------------------------------------------------------------------------------ATGGCA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	4	0.25	1	0	1	0	0	0	0
...............................................................................................................................................................................................................CGTGACAC------TCCAACAGTGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	4	0.25	1	0	1	0	0	0	0
..............................................................................................................................................................................................................................CCAACAGTGCCG------------------------------------------------------------------------------------------ATGGCAGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	4	0.25	1	0	0	1	0	0	0
................................................................................................................................................................................................................GTGACAC------TCCAACAGTGCCG------------------------------------------------------------------------------------------ATGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	4	0.25	1	0	1	0	0	0	0
.................................................................................................................................................................................................................TGACAC------TCCAACAGTGCCG------------------------------------------------------------------------------------------ATGGCA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	4	0.25	1	0	1	0	0	0	0
..........................................................................................................................................................................................................TACATCGTGACAC------TCCAACAGTGCCG------------------------------------------------------------------------------------------.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	4	0.25	1	0	0	1	0	0	0
...............................................................................................................................................................................................................CGTGACAC------TCCAACAGTGCCG------------------------------------------------------------------------------------------.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	4	0.25	1	0	1	0	0	0	0
...............................................................................................................................................................................................................CGTGACAC------TCCAACAGTGCCG------------------------------------------------------------------------------------------ATGGCAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	4	0.25	1	0	1	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................A-------------------------------------------------------------AC---AAC---------------------AGCAACAACAGCAGC---------AACAG.......................................................................................................................................................................................................................................................................................................................................................................................................................	26	5	0.20	1	0	1	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCA-------------------------------------------------------------------ACAACAACAA----------------------CA------------------CCA---------------------------------GAG................................................................	23	5	0.20	1	0	1	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTGATGCCG----ACATTGC-CATT------------G--------------------G..	24	5	0.20	1	0	1	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTTCA-------------------------------------------------------------------ACAACAACAA----------------------CA------------------CCA---------------------------------G..................................................................	22	5	0.20	1	0	1	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACTTCA-------------------------------------------------------------------ACAACAACAA----------------------CA------------------CC.....................................................................................................	21	5	0.20	1	0	1	0	0	0	0
..........TTGC------------------------------------------------------------------------------------------------------------------AGCGCCGC---------------------------------------------------CAACTGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	5	0.20	1	0	1	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTTCA-------------------------------------------------------------------ACAACAACAA----------------------CA------------------CCA---------------------------------GAGATA.............................................................	27	5	0.20	1	0	1	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTTCA-------------------------------------------------------------------ACAACAACAA----------------------CA------------------CCA---------------------------------GA.................................................................	23	5	0.20	1	0	1	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGC---------AACAGCAGCG------------GCA---------------------AC------------------------------------------AGCG..............................................................................................................................................................................................................................................................................................................................	23	5	0.20	1	0	1	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTTCA-------------------------------------------------------------------ACAACAACAA----------------------CA------------------CCA---------------------------------GAGAT..............................................................	26	5	0.20	1	0	1	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCA-------------------------------------------------------------------ACAACAACAA----------------------CA------------------CC.....................................................................................................	18	5	0.20	1	0	1	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C------------------------------------------AGCGGCGA-----CGGCAGCTGC------AGC---------------------------------.................................................................................................................................................................................................................................................................	22	5	0.20	1	0	1	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTGATGCCG----ACATTGC-C.......................................	19	5	0.20	1	0	1	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTGATGCCG----ACATTGC-CATT------------G--------------------...	23	5	0.20	1	0	1	0	0	0	0
.............................................................................................................................................................................................ACTGCGGCGGCTGTACAT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	5	0.20	1	0	1	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCGA-----CGGCAGCTGC------AGC---------------------------------AG...............................................................................................................................................................................................................................................................	20	5	0.20	1	0	1	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATTGATGCCG----ACATTGC-CATT------------........................	22	5	0.20	1	0	1	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGATGCCG----ACATTGC-CATT------------G--------------------...	20	5	0.20	1	0	1	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATATTGATGCCG----ACATTGC-CATT------------G--------------------...	25	5	0.20	1	0	1	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCA-------------------------------------------------------------------ACAACAACAA----------------------CA------------------CCA---------------------------------GAGAA..............................................................	25	5	0.20	1	0	1	0	0	0	0
...............................................................................................................................................................................................TGCGGCGGCTGTACATCGTGACAC------TCA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	5	0.20	1	0	1	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTTCA-------------------------------------------------------------------ACAACAACAA----------------------CA------------------CCA---------------------------------...................................................................	21	5	0.20	1	0	1	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-------------CAACTTCA-------------------------------------------------------------------ACAACAACAA----------------------CA------------------CCA---------------------------------...................................................................	24	5	0.20	1	0	1	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A-------------CAACTTCA-------------------------------------------------------------------ACAACAACAA----------------------CA------------------CC.....................................................................................................	23	5	0.20	1	0	1	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTCA-------------------------------------------------------------------ACAACAACAA----------------------CA------------------CCA---------------------------------GAGA...............................................................	24	5	0.20	1	0	1	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................GGCAGCA-------------------------------------------------------------AC---AAC---------------------AGCAACA.............................................................................................................................................................................................................................................................................................................................................................................................................................................	19	8	0.13	1	0	1	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................AAC---------------------AGCAACAACAGCAGC---------AACAG.......................................................................................................................................................................................................................................................................................................................................................................................................................	23	9	0.11	1	0	1	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................CAGCA-------------------------------------------------------------AC---AAC---------------------AGCAACAACAGC........................................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	1	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................AAC---------------------AGCAACAACAGCAGC---------AAC.........................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0	0

droAna3

GCTT-C------------------------------------TGC---AACTATTGCTGGTTAGCT----------GCTAGTTGCTGCTGCTGC----------------------------------------------------------------------------------TGCTGCTGC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CACGGTTTGTTGCTTCACTGATTACGCGCAATGCAGC---AGTAGCAGTAGC---------AGTGGC---------------------AGAGGAG---------------------------------------AC------------------------------------------AG------AGGAGCCACTGCA---------------------------------------------------------A-------------CAACTGCA-------------------------------------------------------------------ACAA-AACAG----------------------CA------------------GCT---------------------------------GAGAGTT---CAGTTGCGA-AACCG----GCGAAGCGC--GA------------------CTGTTGC	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAA-AACAG----------------------CA------------------GCT---------------------------------GAGAGTT---CA.......................................................	23	1	1.00	1	0	0	0	0	1	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCT---------------------------------GAGAGTT---CAGTTGCGA-...............................................	19	1	1.00	1	0	0	0	0	1	0
........................................................................................TGCTGC----------------------------------------------------------------------------------TGCTGCTGC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CACGGTTTGTTGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	1	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGA-AACCG----GCGAAGCGC--GA------------------C......	20	1	1.00	1	0	1	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................GCGCAATGCAGC---AGTAGCAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
........................................................................................TGCTGC----------------------------------------------------------------------------------TGCTGCTGC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CACGGTTTGTTG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................C---AGTAGCAGTAGC---------AGTGGC---------------------AGA.........................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	1	0
...............................................................................................................................................................................................................................................................................................................................................................................................................AGTAGCAGTAGC---------AGTGGC---------------------AGAG........................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	1
..................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGTAGC---------AGTGGC---------------------AGAGG.......................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................CAGC---AGTAGCAGTAGC---------AGTGGC---------------------............................................................................................................................................................................................................................................................................................................................................................................................................................	22	2	0.50	1	1	0	0	0	0	0

droBip1

CTTC-GCCCAGGAGCATGCCAAT--GCCACCTTGTCG--CAGTAT---T----------------------------------------------------------------------TCCAG---------------------CAACTCAACT--CCCAGGTGGCGGCGGC------------------------------------------------------T------------------------------------------G-----TCACCAACAGCGGCAGC-----------------------------------------------------------------------------------------------A--GCAAC---AGCAGCAGCAAC---------AACGGC---------------------AGCGGTGGCA------------ACAACAA---------CA------AC--------------AACAAC----------------------AACAACAA--------------------CAACAACAACAGCGGCAACAACAGCAGCAGCGGCAAC------------A-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCG----A--CAGCGG-CAACG-------------------ACGG	Size	Hit Count	Total Norm	Total
No Reads

droKik1

CGTC-CTCGGTGGG----------------------------AGC---AGCCACAG-------------------------------CT-------------------------------------------CCA------------------------C---------------------------TGACTCTGGCGGC---------------------------------------------------------------------------------------------AGCTGATGAATCCACTTTGGCCAATGT------------CCAGGCAATGCTTTCAACGGTGGCCAA---------------------------GTT-----GCAGCAGCAGCAGGA------------------------------------------GTT---------------------------------------GCCTGTGGAGTTGAACTCCAG-------------------------------C-GAGATGTATC---------------------------------------------AGCATGT-------------------------GCAGCACGATTGGAACTTTGGTGACATCAAGCTAAGCAGCACGCAGTCCACGGTAGATCAGCAGCA---------------------------------------------------------------------------------------------------------------------------AAACCTG-AA--------------------TCATGA	Size	Hit Count	Total Norm	Total
No Reads

droFic1

CGTG-GCCGCCTCG----------------------------CA--------------------------------GCAC-CAGCAGCAGCACCAGCAGAT---------GCCCCACT------------------------------------------ATG------------------------CGG------------------------------TGTCGGCGGTGCAC---ATGC-A-------------------------GAG-----CCACCACCATCA---GCA----------------------------------------------------------------------------------------------------GCAGCAGCAGCAG--GC---------GGCGGC---------------------AGCGGTGGCG------------GCAGCG------------------------------------------------------------------------CAGGCGCAGCA---CC------------------------------------------ACC-------------------------AGCAGCAGC---------------------------------------------------------A----------ACAGCAGGCGGCGGCGGCGGCAGCGGC-------------------------------------------------------------C---CAGGC----GCACCAC-CAG--CAGCAG-CAGCA-----------------CCA-TG	Size	Hit Count	Total Norm	Total
No Reads

droEle1

TCAG-C-----CAT----------------------------TTC---ACCCAATCCCAG----------------------------------------------------------------------CATCGGCAGTGCGGGCAACATGACGCCCACCA------------------------------------------------------------GCA------------------------------------------------------------------GCA----------------------------------------------------------------------------------------------------GC---AGCAGCAGCAGC---------AACAGC---------------------AGCAGCAACA------------GCAGCAG------CAACAGCAGCAAC------------------------------------------AT--------------------------CAGCAGCAACACCAGCAACAGTAACAGGAGCAGCATC------------A--------------------------------------------------------------------------------------------------T----------------------T-GCC-----------------AGTCCGC--TGA--------------------------------------------GCAGTCTGGGCAGTGG-CAGCA--------------------CCA	Size	Hit Count	Total Norm	Total
No Reads

droRho1

CCA------GCAAG----------------------------CGC---AGCGGCAT------------------------------------------------------TCCTCAGC-------------A-------------------------TGCGG---------------------------G------------------------------TGGTGCCAGTGTGC---TTGCCA-------------------------------------------------------------------------CCGC------------TCTAACAACACC---------------CACGACTAGCCAC--------------TCG-----T---------------------------------------------------------------------------------------------------C--------------------------------------------------------CTCTGCA---------------------------------------------------------G-------------CCACTTCA-------------------------------------------------------------------GCGG-AACAG----------------------CA------------------T--------------------------GCGTCAGTGGA---TC---CTGTC----ATTCCGC-TGGTGGAGCTCACGA-------------------CGATGA	Size	Hit Count	Total Norm	Total
No Reads

droBia1

GCAG-C-----AG-------------------------------C-------AACACCAG------------------------------C----------------------------GACAGTTGCTGCAGCAC---------------------------------------------------CAGCATTCGCATCCGCCCTTCCAAGCCCCCCAGCAACA------------------------------------------------------------------CCA------------------------GCCCGCACA-------------------------------------------------------------------GC---AGC------------------AACACC---------------------AGTCGTTGCA------------GCAGCAG------CAGCA--------------------------------------------------------------------------------------GCAGC-------------------------------------------------------AGCATCAGC---------------------------------------------------------A----------ACAGCA----------------------------------------GCA------------------------GCAACACTTGC---AC---CACTC----GCACCAC-CCA--CCGCTG-CAGCA--------------------CCA	Size	Hit Count	Total Norm	Total
No Reads

droTak1

TATT-C-TGGCCGG----------------------------TGC---AGCGGCAG-------------------------------CT------------TC-------------------------GGCG------------------------------------GCGGCAGCTGCAGCAGCGGCGGCTCTGGCGGCCG------------------------------CCTCCTCGG-CCAGCAGTCCGTCGGACTCGGAGCACCATCATCTCCATCACCAGCA----------------------------------------------------------------------------------------------------------GC---AGC---------------AGCAACACC---------------------ACCAGCA---------------GCAGCAG------CAGCA------AC--------------ACCAGC----------------------AG-----------CAACAGCAACACC------------------------AGCAGCAGCAGCAAC---------ATCA-GCAGGCTGCCCTGCAGC---------------------------------------------------------------------------------------------------------------------A---------------------------------------------------------------ATACATCGTGCAACAG-CAGCA-------------------ATTG	Size	Hit Count	Total Norm	Total
No Reads

droEug1

TCTCTGCCTATTAC-------------------------------------CACAGCCAGC----------------------------------AG--AC---------GGCC-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CA-------------------------------------------------------------------GC---AGCAACTCC---------------AGCAACAGCAGCAGCAACAACAACAGCAGCAACA------------G---------------CA------AC--------------AGCA--CTCTCTGCAGCAGCAACAGTTC--------GCA---CT------------------CAGCAGC------------------------------------AG-------------CAATCTC-------------------------------------------------------------------------------AATGGCCAGCAGCAACAGCAAC-ACC-----------------AGCTCACCTTGAACAATCGCACCAAGAGCCAGCAGA---AT---TTCCAGCACACCCTGC-GCATGCAGC----A------------------GATGATGG	Size	Hit Count	Total Norm	Total
No Reads

dm3

GTGC-A-------------------------------------------ACCAATGCCGCC----------------------------------GA--GG---------TGCTCGGCTT-C------AGCACTGT---------------------------------------------------CAACTCGGACATCTT--------------------------------------------------------CTCA-------------------------------------------------------------------------------------------------------------------------------GCGCAAC---TGCAGCAGCAAC---------AACAAC---------------------AGCAGCAACAGCACGCCGCCCAGCAGCAG------CAGCA--------------------------------------------------------------------------AC------------------AAC-------------------------------------------------AGCAGCAGC---------------------------------------------------------A----------ACATCA----------------------------------------CCA---------------------------------GG------------C----ACATCCA---------CAG-CAGGTTCAGATTATTCAGCAGGGCGCTG	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
.......................................................................................................................T-C------AGCACTGT---------------------------------------------------CAACTCGGACA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................ACTGT---------------------------------------------------CAACTCGGACATCTT--------------------------------------------------------CTCA-------------------------------------------------------------------------------------------------------------------------------GCGCA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	29	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................AACTCGGACATCTT--------------------------------------------------------CTCA-------------------------------------------------------------------------------------------------------------------------------GCGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAC-------------------------------------------------AGCAGCAGC---------------------------------------------------------A----------ACATCA----------------------------------------CC.....................................................................................................	21	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTTCAGATTATTCAGCAGGGCGC..	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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droSim2

CATC-GTCGGCCGG----------------------------AGC---ACCGACGG-------------------------------CT-------------------------------------------------------------------CCACTG---------------------------ACGCTGGCA---------------------------------------------------------------------------------------------GCAGCAGCTGAAACCACGTTGGCAAATGT------------CCAAGCCATGCTTTCAACTGTGGCCAA---------------------------GTT--ACAGCAGCAGCAGCAGGA------------------------------------------GTT---------------------------------------ACCCGTGGAGTTGAACTCCAA-------------------------------T-GAAATGTACC---------------------------------------------AGCATGT-------------------------GCAGCACGATTGGAACTTTGGTGACATTAAGTTAAGCAGTTCGCAGTC-----------------------------------------------------------------------------------------------------------------------------------------GAGCGGAGA-T-CAGCA-------------------GCGA	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCCGTGGAGTTGAACTC............................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTTAAGCAGTTCGCAGTC-----------------------------------------------------------------------------------------------------------------------------------------GAGCGGAG................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAGCAGCAGGA------------------------------------------GTT---------------------------------------A.............................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-------------------------GCAGCACGATTGGAACTTTGGTGACAT......................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGAACTTTGGTGACATTAAGTTAAGC............................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................TGAAACCACGTTGGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	15	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGAACTCCAA-------------------------------T-GAAAT...................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................GCAGGA------------------------------------------GTT---------------------------------------ACCCGTGG......................................................................................................................................................................................................................................................................................................................................................................	17	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGACATTAAGTTAAGCA...........................................................................................................................................................................................	18	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0

droSec2

CGCT-GCCCGTTAC----------------------------CGT---GGCAACA-----------------------------------------------------------------------------T------------------TGCCCACTCAGGCGGCGACAGCAGCAGCAGCAACAGCTGC-------------GA-----------------------------------------------------------------------------------------------------------------------------------------------TTTTGGCCAC---------------------------TCA-----CC------------------------------------------------------AGCAACA------------GCAGCAGCAGCAA---TTGCAGCAGC------------------------------------------ATCTGCATTTG------------------AGCAGCAGCAACAACAACAACAACGGCGGCAGCA----------------------------------------------------------------------------------------------------CAC-----------------------------------------ACGGCCAACA------------------------------------------------------------GC---ATACGCAC-AG-CAACA-------------------ACAA	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
No Reads

droYak3

TGGG-GGCGGCTGC----------------------------CAC---GCCCACGGCCAGCCAGTTGGCGGT--------------------------------------------------------------------------------GGCCTCCCAAGCGGCGATGGCAGCGGCAGCCGCGGCGGC-------------CTTTAA------------------------------------------------CGCA-------------------------------------------------------------------------------------------------------------------------------GCGCAAC---AGCAGCAGCAACAGCAGCAGCAACACC---------------------AGCACCA---------------GCAGCAG------CAGCA------AC--------------ACCAGC----------------------AGTCGCAA--------------------CAGCAGCAACAGCAGCAGCAGTCGCAGC---------------------AG----------------------------------------------------------------------------------C---------------------------------------------------AACTCC--AT------------------------------------------------------GCC-CTCGC------G-CAGCA-------------------GCAC	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAA--------------------CAGCAGCAACAGCAGCAGCAGTCG..............................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..............................................................AGTTGGCGGT--------------------------------------------------------------------------------GGCCTCCCAAGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................GCAACAGCAGCAGCAACACC---------------------AGC.........................................................................................................................................................................................................................................................................................................................................................................................................................	23	2	0.50	1	0	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AG----------------------------------------------------------------------------------C---------------------------------------------------AACTCC--AT------------------------------------------------------GCC-CTCGC------G-C...........................	21	2	0.50	1	0	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGCAGCAGCAGTCGCAGC---------------------A....................................................................................................................................................................................................................................................	21	3	0.33	1	0	0	0	0	0	0	1	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAACAGCAGCAGCAGTC...............................................................................................................................................................................................................................................................................	21	3	0.33	1	0	0	0	0	0	0	1	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAGCAGCAGCAGTCGC.............................................................................................................................................................................................................................................................................	19	7	0.14	1	0	1	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................CACC---------------------AGCACCA---------------GCAGCAG------CA.......................................................................................................................................................................................................................................................................................................................................................................................	20	11	0.09	1	0	1	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................CAACAGCAGCAGCAACACC---------------------............................................................................................................................................................................................................................................................................................................................................................................................................................	19	19	0.05	1	0	1	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAA--------------------CAGCAGCAACAGCAGCA.....................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	1	0	0	0	0	0	0	0

droEre2

CAAC-A--AGCTGG----------------------------TGCAACAGTCGCAG-------------------------------TT-------------------------------------------CTA---------------TATCAACCAC------------------------------------------------------------AATCAGCAGTACCC------------------------------------------------------------------------------------------ACA-------------------------------------------------------------------GC---AGC---------------AACATCACC---------------------AGCAGCA---------------GCATCAA------CAGCA------GC--------------ACCAGC----------------------ATCAGTAT--------------------CAGCAGCAGCAGCAGCATCAGCATCAGCACCAGCATC------------------------------------------------------------------------------------------------------------------------------------------------------------AG------------------------------------------------------CCT-GCAAC---GCAG-CAGCA-------------------TCAG	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTAT--------------------CAGCAGCAGCAGCA........................................................................................................................................................................................................................................................................................	19	3	0.33	1	0	0	0	0	1	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAT--------------------CAGCAGCAGCAGCAGCA.....................................................................................................................................................................................................................................................................................	20	4	0.25	1	0	0	0	0	0	1	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAGCAGCATCAGCA...............................................................................................................................................................................................................................................................................	18	20	0.15	3	0	0	0	0	0	3	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTAT--------------------CAGCAGCAGCAGCC........................................................................................................................................................................................................................................................................................	19	9	0.11	1	0	0	0	1	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAGCAGCAGCATCAGCA...............................................................................................................................................................................................................................................................................	22	20	0.10	2	0	0	0	0	0	2	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGCAGCAGCAGCATCAGCA...............................................................................................................................................................................................................................................................................	23	20	0.10	2	0	0	0	0	2	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAGCAGCAGCATCA..................................................................................................................................................................................................................................................................................	19	20	0.05	1	1	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAGCATCAGCATCAGCA.........................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	1	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAGCATCAGCATCAG...........................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	1	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAGCAGCAGCATCAGC................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	1	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAGCAGCAGCATCAG.................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	1	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAGCATCAGCATCAGC..........................................................................................................................................................................................................................................................................	20	20	0.05	1	1	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAGCATCAGCATCAGC..........................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	1	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAGCAGCAGCATCAGC................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	1	0

dgr_143

scaffold_14853:1377551-1377655 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads