dgr_130

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------################################################## TGCTTTTGTTGTTGTTGTGGCCACATTTTGCAGGTTAGGTTGAGCTCTGTAGAGCGAGTAAACTAGTAGGGGGAAAAAAAATAAAACATGGAAATTAGAACGAAGTTGAATTGATTTTTCAATCGTCTATGACGCACAACTGCTGCTGAGAAATTTGTTAAATACATGTGTGTATTTAATACATTTTATTTTTACATACAGATATCATCAAAACAAGTGGGCAGCCCAAAAGCTAGCACCTCGCCATTGGA ************************************************..(((((((....((((((.((................((.....((((.(((..(((((.......)))))))))))).....))...)).))))))....))))))).......((((((((..(((......)))....)))))))).************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M041 female body	V109 male body
................................................................................................................................................................................................................CAAAACAAGTGGGCAGCCCA.......................	20	0	1	1.00	1	1	0
.......................................................................................................................................................................................................................AGTGGGCAGCCCAAAAGCTA................	20	0	1	1.00	1	1	0
.......................................................................................................................................................................................................................AGTGGGCAGCCCAAAAGCT.................	19	0	1	1.00	1	1	0
....................................................................................AACACGGACCTTAGAACG.....................................................................................................................................................	18	3	20	0.05	1	0	1

Species	Coordinate	ID	Alignment
droGri2	scaffold_14830:4588733-4588983 -	dgr_130	TGCTTTT-GTTGTTGTTGTGGC------------------------CACAT--TTT-----------------------------------------------------GCAGGTTAGGTTGAGCTCTGTAGAGCGAGTAAACTAGT-AGGGGG-AA-----------------------------------------AAAAAATAAAACATG-GAAA---TT-----AGAACGAAGTTGAATTGATTTTTCAATCGT----CT-A-------------------------------T-----------------------GACGC-------------------------------------------------------------------------------ACA----ACTGCTGCTGA-----GAAATTTGTTAAATACATGTGTGTATTTAATAC----------ATTTTA--TTTTT-------ACATACAGATATCATCA---------AAACAAGTG---GGCAGCCCAAAAGCTAGCACCTCGCCATTGGA--------------------------------------------------------------------------------
droVir3	scaffold_13047:15400748-15401018 +		TGGCTTT-GTTGTTGTTGTTGTTGCATGTGACATTAGGTTCT---------------------------------------------------------------------AGGTTAGGTTTGGATTTGAG-------------------------TAAAAAAAAAAGAAATG-----------------AA-----------------------------AT-----GAAACAACGTTGAATTGATTTTTCAATCGT----C--T-------------------------------C-----------------------TATGACGC-AC--------------ATTATACAAAACACAAAACACAAATGTTTAGCACTTTTCAATAAT-------AGTAAACGTATTAAACTTTTATTTTTTTTT-------------------------------AA----------ATAAAT--TTCTT-------TCATGCAGATATCAACA---------AAACAAGTG---GGCAGCCCAAAAGCTGGCAGCTCGCCATTGGA--------------------------------------------------------------------------------
droMoj3	scaffold_6540:18881755-18881991 +		ATTGGCGTG---T---------TGCGT-----------TTTGAGA-------------------------------------------------------------------------------------------------CTAGGGAGAGAGAGA-----------------------------------------AAAAAAAAAAACAAGTGTAA---TAAAAATGTAGTACAGTTGAATTGATTTTTCAATTCC----ACAT-------------------------------A-----------------------GAAA---AT-C------------------GT-------------AAAAATGTTGAGCACTTTTCATTGACAATAACCAGTAAACATA----AC--TTATTTATT--------------------------------ATTATT----------TTTAAATGATT-------TCATGCAGATATCAACA---------AAACAAGTG---GGCAGCCCGAAAGCTGGCAGCTCGCCATTGGA--------------------------------------------------------------------------------
droWil2	scf2_1100000004921:1403554-1403834 -		TGTACAT-GGTATTGTAGGAGC------------------------AACAT--TCTGAGC-AAACTGCGCGTAGAGTAGCCGCAACCGCCACGT-------------GATTGGGTGAAGTTGAGAGTTGT-------------------------------------------------------------------------------------------TT-----TTAACGAAGTTAAATTGATTTTCCTC-CT------TCAAGAAA--------AGAACAACGCATTCTCCCCCATGCCCCTACATACATG---------------T--------------GTTGTGGAAAATTTT-----------------------------------------------------------------------------TCTAAAACACCC-AA----------TCCAAT--TTTGGT--TTTGG-------TCTTGCAGATATCAGCAACAGCAACTAAACAGACGGGAGGCAGTCCAAAGACAGGAACCTCGCCATTGGA--------------------------------------------------------------------------------
dp5	2:7930005-7930324 +		GGCTTCT-CTTGG------------------CCCAGAGGTTGAGGTTAGAA--TCGGAGCCAAGCTGCGCGT--------------------------------------------------------------------------------------------GAAGCAATGGGCTGCAGGGGGGAGTCGGGTTGGCCAAGTGTAGGGTGTC-GAGACTCCT-----AAAACGAAGTTGAATTGATTTTTTGTTTGTTTGTTTTTGGGAGTGAAACCCAAGACGACGCATGTG---TCATGATCTAACTATCAGGCAGTGGAAA---AT-TTTCA---------TATTCTCAGATATTGT----------------------------------------ATACATA----TCTCTTATTTGGTGTT-------------------------------AT----------GTTGTG--TTTGT-------GCTTCCAGATATCAGCA---------AAACAGTCG---TCGAGCCCCAAGGCAGGAACCTCTCCATTGGA--------------------------------------------------------------------------------
droPer2	scaffold_0:1764641-1764958 +		CGGTCTC-TTG-G------------------CCCAGAGGTTGAGGTTAGAA--TCGGAGCCAAGCTGCGCGT--------------------------------------------------------------------------------------------GAAGCAATGGGCTACAGG-GGGAGTCGGGTTGGCCAAGTGTAGGGTGTC-GAGACTCCT-----AAAACGAAGTTGAATTGATTTTTTGTTTGTTTGCTTTTGGGAGTGAAACCCAAGACGACGCATGTG---TCATGATCTAACTATCAGGCAGTGGAAA---AT-TTTCA---------TATTCTCAGATATTGT----------------------------------------ATACATA----TCTCTTATTTGGTGTT-------------------------------AT----------GTTGTG--TTTGT-------GCTTCCAGATATCAGCA---------AAACAGTCG---TCGAGCCCCAAGGCAGGAACCTCTCCATTGGA--------------------------------------------------------------------------------
droAna3	scaffold_13340:22277659-22277845 -		CCCTCTT-TTTTTT-------------------------TTTAGGTTATAACTTTTGTGCGGAAC------------------------ACCGCTCGG--------------------------------G-----------------------------------------------------------AAGT--------------------------------------TGG----GAATTGATTTTTCAA-CAA----------------------------------------------------------------------AG-TTCTG---------CCTCCTCTGAAATGAA----------------------------------------ACTCATA----GCTTCTATCTT----------------------------------TTCTGT----------T----------TTGTGTTTTTTTTAGATATCAGCT---------AAACAATCT---GGGAGCCCCAAGGCAGGAACCTCTCCATTGGA--------------------------------------------------------------------------------
droBip1	scf7180000396721:884786-884941 +		CCCTCCTTG---G--------------------------------------------TGCGCAAC------------------------CACGC-------------ATGCAAGTGGAGTTGGGAGTTGGG-----------------------------------------------------------AAGC--------------------------------------CG----GGAATTGATTTTTCAC-CAA----AACT-------------------------------G-----------------------GAGA-----------------------------------------------------------------------------CTCATA----GCTGCGAT-------------------------------------------------------------CTT-------CGTTACAGATATCAGCC---------AAACAATCT---GGAAGCCCCAAGGCAGGAACCTCTCCATTGGA--------------------------------------------------------------------------------
droKik1	scf7180000302475:668277-668353 +		TTTGTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AT----------GTTTTG--TGTGC-------CCCTACAGATATCGGCT---------AAACAATCC---GGCAGCCCCAAGGCAGGAACCTCTCCATTGGA--------------------------------------------------------------------------------
droFic1	scf7180000453581:468516-468750 +		AGGGAGT-GAAGTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GC--------------------------------------TGAAGTTGCATTGATTTTTACC-CAT----TTTT-------------------------------T-----------------------GAGT-CACTTC--------------CTTTTATGAAGAAGA-----------------------------------------------------------------------------ACTCACATTCCC-------ATTTGTTTGT--AT--T----------CA-----TGTTTTAGATATCGGCT---------AAACAATCC---GGCAGCCCAAAGGCAGGAACTTCTCCATTGGACAAACGTGTTTTGCAGCCAAAGGCACAGCAACAACAGCAAAACAAGCAGACTGCCAGCCACAACAACAACAACAACGCAC
droEle1	scf7180000491280:3826891-3827034 +		TGG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGT--------------------------------------TGAAGTTGCATTGATTTTTACC-CAA----TTTT-------------------------------A-----------------------GAAAGTACT-----C---------CCGTCTATGGAATTTA-----------------------------------------------------------------------------ACTCATATTCTT-------ATTTGT----------T------TTGT-------ATTTACAGATATCGGCT---------AAACAATCC---GGCAGTCCAAAGGCAGGAACTTCTCCATTGGA--------------------------------------------------------------------------------
droRho1	scf7180000779538:72983-73140 +		C-A--------------------------------------------------------------------------------------------TAGGGAGTG--------------------------G-----------------------------------------------------------AAGT--------------------------------------TGGAGTTGCATTGATTTTTACC-CAG----TTTT-------------------------------A-----------------------GGTGGAAGTCT--------------CCTATAAGAAATTTA-----------------------------------------------------------------------------ACTCATATTACC-------ATTTCT----------T------TT--GGGTTATACTTCTAGATATCGGCA---------AAACAATCC---GGCAGTCCGAAGGCAGGTACTTCTCCATTGGA--------------------------------------------------------------------------------
droBia1	scf7180000301506:1042299-1042421 +		GCT--------------------------------------------------------------------------------------------TAAAGAGTTGCTAATTAAATTA--------------------------------------------------------------------------------------------------------------------AGTGAAGTGTCGAATTTAGTA-CGT----TTT--------------------------------C-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTTT-------GTGTGCGCTTAACCTAC---------TGCCAAG----------------------------------------------------------TGCACTCCAACGGAGG---------CAGCCAGGCAGCTGCAGCAGCAGCA---------
droTak1	scf7180000415383:356984-357153 +		GCA--------------------------------------------------------------------------------------------TAGGGAGTA--------------------------------------------------------------------------------------AAGT--------------------------------------TGAAGTTGCATTGATTTTTACC-CAT----TTTT-------------------------------C-----------------------GGTGTTAC-CTACTCCATTCTATATACCCTTTGAAACTTA-----------------------------------------------------------------------------ACTCACAAATGT-----------GT-TTT--TT--C----------TTGCTATATTTACAGATATCGGCT---------AAACAATCC---GGCAGCCCAAAGGCAGGAACTTCTCCATTGGA--------------------------------------------------------------------------------
droEug1	scf7180000409787:1444981-1445140 +		G-------------------------------------------------------------------------------------------------GGAGTT--------------------------------------------------------------------------------------CAGT--------------------------------------TGAAGTTGCATTGATTTTTACC-CAT----TTTT-------------------------------C-----------------------TATGTTACT-TTCTC---------TACTCTGTGAAAATTA-----------------------------------------------------------------------------ACTCACATTCTTGAA----ATGTGT---------TTG---------TTGTTATATTCACAGATATCGGCT---------AAACAATCC---GGCAGCCCAAAGGCAGGAACTTCTCCATTGGA--------------------------------------------------------------------------------
dm3	chr3R:24151492-24151649 -		GCA--------------------------------------------------------------------------------------------TAGGGAGTG--------------------------------------------------------------------------------------GAGC--------------------------------------TGGAGTTGCATTGATTTTTACC-CGT----TTTT-------------------------------C-----------------------GGGGCTAC-CT--------------ACTGTGCGAAATGTA-----------------------------------------------------------------------------ACTCATATTCTTGAA----------TTCC--AT--T----------CTGCTACTTCAACAGATATCGGCC---------AAACAATCC---GGCAGCCCAAAGGCAGGAACTTCTCCATTGGA--------------------------------------------------------------------------------
droSim2	3r:23529798-23529955 -		GCA--------------------------------------------------------------------------------------------TAGGGAGTG--------------------------------------------------------------------------------------GAGC--------------------------------------TGGAGTTGCATTGATTTTTACC-CGT----TTTT-------------------------------C-----------------------GGGGCTAC-CG--------------ACTGTGCGAAATGTT-----------------------------------------------------------------------------ACTCACATTCTTGAA----------TTCC--AC--T----------CTGCTACTTCAACAGATATCGGCC---------AAACAATCC---GGCAGCCCAAAGGCAGGAACTTCTCCATTGGA--------------------------------------------------------------------------------
droSec2	scaffold_22:755522-755678 -		C-A--------------------------------------------------------------------------------------------TAGGGAGTG--------------------------------------------------------------------------------------GAGC--------------------------------------TGGAGTTGCATTGATTTTTACC-CGT----TTTT-------------------------------C-----------------------GGGGCTAC-CG--------------ACTGTGCGAAATGTA-----------------------------------------------------------------------------ACTCACATTCTTGAA----------TTCC--AT--T----------CTGCTACTTCAACAGATATCGGCC---------AAACAATCT---GGCAGCCCAAAGGCAGGAACTTCTCCATTGGA--------------------------------------------------------------------------------
droYak3	3R:22351302-22351449 +		G-------------------------------------------------------------------------------------------------GAACTG--------------------------------------------------------------------------------------GAGC--------------------------------------TGGAGTTGCATTGATTTTTACC-CGT----TTTT-------------------------------C-----------------------GGTGCTAC-CA--------------ACTCTGCGAAGTGTA-----------------------------------------------------------------------------ACTCACATTCTTGAA----------T---------T----------CTGCTACTTCCACAGATATCGGCC---------AAACAATCC---GGCAGCCCAAAGGCAGGAACCTCTCCATTGGA--------------------------------------------------------------------------------
droEre2	scaffold_4820:3895745-3895900 +		C-A--------------------------------------------------------------------------------------------TAGGGAGTG--------------------------------------------------------------------------------------GAGC--------------------------------------TGGAGTTGCATTGATTTTTACC-CGT----TT-T-------------------------------C-----------------------GGTGCTAC-CG--------------ACTCTGCGAAGTGTT-----------------------------------------------------------------------------ACTCACATTCTTGAA----------TTCC--AT--T----------CTGGTACTTTCACAGATATCGGCC---------AAACAATCC---GGCAGCCCAAAGGCTGGAACTTCTCCATTGGA--------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droGri2

TGCTTTT-GTTGTTGTTGTGGC------------------------CACAT--TTT-----------------------------------------------------GCAGGTTAGGTTGAGCTCTGTAGAGCGAGTAAACTAGT-AGGGGG-AA-----------------------------------------AAAAAATAAAACATG-GAAA---TT-----AGAACGAAGTTGAATTGATTTTTCAATCGT----CT-A-------------------------------T-----------------------GACGC-------------------------------------------------------------------------------ACA----ACTGCTGCTGA-----GAAATTTGTTAAATACATGTGTGTATTTAATAC----------ATTTTA--TTTTT-------ACATACAGATATCATCA---------AAACAAGTG---GGCAGCCCAAAAGCTAGCACCTCGCCATTGGA--------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CA---------AAACAAGTG---GGCAGCCCA.......................................................................................................	20	1	1.00	1	1	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTG---GGCAGCCCAAAAGCTA................................................................................................	20	1	1.00	1	1	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTG---GGCAGCCCAAAAGCT.................................................................................................	19	1	1.00	1	1	0

droVir3

TGGCTTT-GTTGTTGTTGTTGTTGCATGTGACATTAGGTTCT---------------------------------------------------------------------AGGTTAGGTTTGGATTTGAG-------------------------TAAAAAAAAAAGAAATG-----------------AA-----------------------------AT-----GAAACAACGTTGAATTGATTTTTCAATCGT----C--T-------------------------------C-----------------------TATGACGC-AC--------------ATTATACAAAACACAAAACACAAATGTTTAGCACTTTTCAATAAT-------AGTAAACGTATTAAACTTTTATTTTTTTTT-------------------------------AA----------ATAAAT--TTCTT-------TCATGCAGATATCAACA---------AAACAAGTG---GGCAGCCCAAAAGCTGGCAGCTCGCCATTGGA--------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGTG---GGCAGCCCAAAAGCTGGCAG............................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATCAACA---------AAACAAGTG---GGCA............................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................CATTAGGTTCT---------------------------------------------------------------------AGGTTAGGTTTGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................T-------------------------------C-----------------------TATGACGC-AC--------------ATTATACAAA.............................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................C-----------------------TATGACGC-AC--------------ATTATACAA..............................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACA---------AAACAAGTG---GGCAGCCCA.......................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAACA---------AAACAAGTG---GGCAGCCCAAAA....................................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................ATTTTTCAATCGT----C--T-------------------------------C-----------------------TATGA...........................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................TGTTGTTGCATGTGACATTA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................TTTCAATCGT----C--T-------------------------------C-----------------------TATGA...........................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAAAAGCTGGCAGCTCGCCATT...................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTGGCAGCTCGCCATTGGA--------------------------------------------------------------------------------	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCAACA---------AAACAAGTG---GGC.............................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
...CTTT-GTTGTTGTTGTTGTTGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

ATTGGCGTG---T---------TGCGT-----------TTTGAGA-------------------------------------------------------------------------------------------------CTAGGGAGAGAGAGA-----------------------------------------AAAAAAAAAAACAAGTGTAA---TAAAAATGTAGTACAGTTGAATTGATTTTTCAATTCC----ACAT-------------------------------A-----------------------GAAA---AT-C------------------GT-------------AAAAATGTTGAGCACTTTTCATTGACAATAACCAGTAAACATA----AC--TTATTTATT--------------------------------ATTATT----------TTTAAATGATT-------TCATGCAGATATCAACA---------AAACAAGTG---GGCAGCCCGAAAGCTGGCAGCTCGCCATTGGA--------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCCCGAAAGCTGGCAGCTCGCCATTGG.................................................................................	28	1	1.00	1	1	0	0	0	0	0
......................................................................................................................................................................................................................GTAA---TAAAAATGTAGTACAGTTGAATTG............................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	1	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCCCGAAAGCTGGCAGCTCGC.......................................................................................	22	1	1.00	1	0	0	0	0	0	1
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAACA---------AAACAAGTG---GGCA............................................................................................................	19	1	1.00	1	1	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATATCAACA---------AAACAAGTG---GGCA............................................................................................................	22	1	1.00	1	1	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TG---GGCAGCCCGAAAGCTGGCA.............................................................................................	21	1	1.00	1	1	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAACA---------AAACAAGTG---GGCA............................................................................................................	20	1	1.00	1	1	0	0	0	0	0

droWil2

TGTACAT-GGTATTGTAGGAGC------------------------AACAT--TCTGAGC-AAACTGCGCGTAGAGTAGCCGCAACCGCCACGT-------------GATTGGGTGAAGTTGAGAGTTGT-------------------------------------------------------------------------------------------TT-----TTAACGAAGTTAAATTGATTTTCCTC-CT------TCAAGAAA--------AGAACAACGCATTCTCCCCCATGCCCCTACATACATG---------------T--------------GTTGTGGAAAATTTT-----------------------------------------------------------------------------TCTAAAACACCC-AA----------TCCAAT--TTTGGT--TTTGG-------TCTTGCAGATATCAGCAACAGCAACTAAACAGACGGGAGGCAGTCCAAAGACAGGAACCTCGCCATTGGA--------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCAGTCCAAAGACAGGAACCTCGC.......................................................................................	25	1	1.00	1	0	0	0	1	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAACAGCAACTAAACAGACGGGA................................................................................................................	26	1	1.00	1	0	0	0	1	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGACGGGAGGCAGTCC........................................................................................................	19	1	1.00	1	0	0	0	1	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGCAACTAAACAGACGGGA................................................................................................................	22	1	1.00	1	0	0	0	1	0

dp5

GGCTTCT-CTTGG------------------CCCAGAGGTTGAGGTTAGAA--TCGGAGCCAAGCTGCGCGT--------------------------------------------------------------------------------------------GAAGCAATGGGCTGCAGGGGGGAGTCGGGTTGGCCAAGTGTAGGGTGTC-GAGACTCCT-----AAAACGAAGTTGAATTGATTTTTTGTTTGTTTGTTTTTGGGAGTGAAACCCAAGACGACGCATGTG---TCATGATCTAACTATCAGGCAGTGGAAA---AT-TTTCA---------TATTCTCAGATATTGT----------------------------------------ATACATA----TCTCTTATTTGGTGTT-------------------------------AT----------GTTGTG--TTTGT-------GCTTCCAGATATCAGCA---------AAACAGTCG---TCGAGCCCCAAGGCAGGAACCTCTCCATTGGA--------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACAGTCG---TCGAGCCCCAAGGCA.................................................................................................	24	1	1.00	1	0	0	0	0	0	1	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCAGGAACCTCTCCATT...................................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAGCCCCAAGGCAGGAACCTCTCCATT...................................................................................	28	1	1.00	1	0	0	1	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGCA---------AAACAGTCG---TCGAG...........................................................................................................	20	1	1.00	1	0	0	0	0	0	1	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAACAGTCG---TCGAGCCCC.......................................................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................TTATTTGGTGTT-------------------------------AT----------GTTGTG--T.................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0
........................................................................................................................................................................................................AGTGTAGGGTGTC-GAGACTCC...................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................TTGGCCAAGTGTAGGGTGTC-GA.........................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	1	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G---TCGAGCCCCAAGGCAGGAACCTCT........................................................................................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGCA---------AAACAGTCG---TCGAGCCCCAAGG...................................................................................................	28	1	1.00	1	0	0	0	0	0	0	1	0	0	0

droPer2

CGGTCTC-TTG-G------------------CCCAGAGGTTGAGGTTAGAA--TCGGAGCCAAGCTGCGCGT--------------------------------------------------------------------------------------------GAAGCAATGGGCTACAGG-GGGAGTCGGGTTGGCCAAGTGTAGGGTGTC-GAGACTCCT-----AAAACGAAGTTGAATTGATTTTTTGTTTGTTTGCTTTTGGGAGTGAAACCCAAGACGACGCATGTG---TCATGATCTAACTATCAGGCAGTGGAAA---AT-TTTCA---------TATTCTCAGATATTGT----------------------------------------ATACATA----TCTCTTATTTGGTGTT-------------------------------AT----------GTTGTG--TTTGT-------GCTTCCAGATATCAGCA---------AAACAGTCG---TCGAGCCCCAAGGCAGGAACCTCTCCATTGGA--------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G---TCGAGCCCCAAGGCAGGAACCTCTCC......................................................................................	27	1	4.00	4	4	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAGTCG---TCGAGCCCCAAG....................................................................................................	20	1	3.00	3	3	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CA---------AAACAGTCG---TCGAGCCCCAAG....................................................................................................	23	1	2.00	2	2	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAGCA---------AAACAGTCG---TCGAG...........................................................................................................	21	1	1.00	1	0	0	0	0	1	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................TGGTGTT-------------------------------AT----------GTTGTG--TTTGT-------GCTTCCAG..............................................................................................................................................	28	1	1.00	1	0	0	0	0	0	1
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CA---------AAACAGTCG---TCGAGCC.........................................................................................................	18	1	1.00	1	1	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCA---------AAACAGTCG---TCGAGCCC........................................................................................................	20	1	1.00	1	0	0	0	0	1	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G---TCGAGCCCCAAGGCAGGAACC...........................................................................................	22	1	1.00	1	1	0	0	0	0	0
..................................................................................................................................................................................................................GTC-GAGACTCCT-----AAAACGAA.....................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTGTG--TTTGT-------GCTTCCAG..............................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0
..................................................................................................................................................................................................................................................................................AACCCAAGACGACGCATGTG---........................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0
..........................................................GCCAAGCTGCGCGT--------------------------------------------------------------------------------------------GAAGCGG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	1
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATCAGCA---------AAACAGTCG---TCGAGCCCC.......................................................................................................	26	1	1.00	1	1	0	0	0	0	0

droAna3

CCCTCTT-TTTTTT-------------------------TTTAGGTTATAACTTTTGTGCGGAAC------------------------ACCGCTCGG--------------------------------G-----------------------------------------------------------AAGT--------------------------------------TGG----GAATTGATTTTTCAA-CAA----------------------------------------------------------------------AG-TTCTG---------CCTCCTCTGAAATGAA----------------------------------------ACTCATA----GCTTCTATCTT----------------------------------TTCTGT----------T----------TTGTGTTTTTTTTAGATATCAGCT---------AAACAATCT---GGGAGCCCCAAGGCAGGAACCTCTCCATTGGA--------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCT---------AAACAATCT---GGGAGCCCCAAGGCAG................................................................................................	28	1	1.00	1	0	1	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T---------AAACAATCT---GGGAGCCCCAAGGCAGG...............................................................................................	27	1	1.00	1	0	1	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGGAGCCCCAAGGCAGGAACCT..........................................................................................	22	1	1.00	1	0	1	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCT---GGGAGCCCCAAGGCAGG...............................................................................................	21	1	1.00	1	0	0	1	0	0	0

droBip1

CCCTCCTTG---G--------------------------------------------TGCGCAAC------------------------CACGC-------------ATGCAAGTGGAGTTGGGAGTTGGG-----------------------------------------------------------AAGC--------------------------------------CG----GGAATTGATTTTTCAC-CAA----AACT-------------------------------G-----------------------GAGA-----------------------------------------------------------------------------CTCATA----GCTGCGAT-------------------------------------------------------------CTT-------CGTTACAGATATCAGCC---------AAACAATCT---GGAAGCCCCAAGGCAGGAACCTCTCCATTGGA--------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droKik1

TTTGTT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AT----------GTTTTG--TGTGC-------CCCTACAGATATCGGCT---------AAACAATCC---GGCAGCCCCAAGGCAGGAACCTCTCCATTGGA--------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droFic1

AGGGAGT-GAAGTT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GC--------------------------------------TGAAGTTGCATTGATTTTTACC-CAT----TTTT-------------------------------T-----------------------GAGT-CACTTC--------------CTTTTATGAAGAAGA-----------------------------------------------------------------------------ACTCACATTCCC-------ATTTGTTTGT--AT--T----------CA-----TGTTTTAGATATCGGCT---------AAACAATCC---GGCAGCCCAAAGGCAGGAACTTCTCCATTGGACAAACGTGTTTTGCAGCCAAAGGCACAGCAACAACAGCAAAACAAGCAGACTGCCAGCCACAACAACAACAACAACGCAC	Size	Hit Count	Total Norm	Total
No Reads

droEle1

TGG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGT--------------------------------------TGAAGTTGCATTGATTTTTACC-CAA----TTTT-------------------------------A-----------------------GAAAGTACT-----C---------CCGTCTATGGAATTTA-----------------------------------------------------------------------------ACTCATATTCTT-------ATTTGT----------T------TTGT-------ATTTACAGATATCGGCT---------AAACAATCC---GGCAGTCCAAAGGCAGGAACTTCTCCATTGGA--------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droRho1

C-A--------------------------------------------------------------------------------------------TAGGGAGTG--------------------------G-----------------------------------------------------------AAGT--------------------------------------TGGAGTTGCATTGATTTTTACC-CAG----TTTT-------------------------------A-----------------------GGTGGAAGTCT--------------CCTATAAGAAATTTA-----------------------------------------------------------------------------ACTCATATTACC-------ATTTCT----------T------TT--GGGTTATACTTCTAGATATCGGCA---------AAACAATCC---GGCAGTCCGAAGGCAGGTACTTCTCCATTGGA--------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droBia1

GCT--------------------------------------------------------------------------------------------TAAAGAGTTGCTAATTAAATTA--------------------------------------------------------------------------------------------------------------------AGTGAAGTGTCGAATTTAGTA-CGT----TTT--------------------------------C-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACTTT-------GTGTGCGCTTAACCTAC---------TGCCAAG----------------------------------------------------------TGCACTCCAACGGAGG---------CAGCCAGGCAGCTGCAGCAGCAGCA---------	Size	Hit Count	Total Norm	Total
No Reads

droTak1

GCA--------------------------------------------------------------------------------------------TAGGGAGTA--------------------------------------------------------------------------------------AAGT--------------------------------------TGAAGTTGCATTGATTTTTACC-CAT----TTTT-------------------------------C-----------------------GGTGTTAC-CTACTCCATTCTATATACCCTTTGAAACTTA-----------------------------------------------------------------------------ACTCACAAATGT-----------GT-TTT--TT--C----------TTGCTATATTTACAGATATCGGCT---------AAACAATCC---GGCAGCCCAAAGGCAGGAACTTCTCCATTGGA--------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droEug1

G-------------------------------------------------------------------------------------------------GGAGTT--------------------------------------------------------------------------------------CAGT--------------------------------------TGAAGTTGCATTGATTTTTACC-CAT----TTTT-------------------------------C-----------------------TATGTTACT-TTCTC---------TACTCTGTGAAAATTA-----------------------------------------------------------------------------ACTCACATTCTTGAA----ATGTGT---------TTG---------TTGTTATATTCACAGATATCGGCT---------AAACAATCC---GGCAGCCCAAAGGCAGGAACTTCTCCATTGGA--------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

dm3

GCA--------------------------------------------------------------------------------------------TAGGGAGTG--------------------------------------------------------------------------------------GAGC--------------------------------------TGGAGTTGCATTGATTTTTACC-CGT----TTTT-------------------------------C-----------------------GGGGCTAC-CT--------------ACTGTGCGAAATGTA-----------------------------------------------------------------------------ACTCATATTCTTGAA----------TTCC--AT--T----------CTGCTACTTCAACAGATATCGGCC---------AAACAATCC---GGCAGCCCAAAGGCAGGAACTTCTCCATTGGA--------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCC---GGCAGCCCAAAGGCAGGAACT...........................................................................................	25	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGGCAGGAACTTCTCCA.....................................................................................	18	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................ACTGTGCGAAATGTA-----------------------------------------------------------------------------ACTCATATTC.................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAGATATCGGCC---------AAACAATCA---................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
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.......................................................................................................................................................................................................................................................................................................................................AC-CT--------------ACTGTGCGAAATGT.........................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCCCAAAGGCAGGAACTTCTC.......................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCC---GGCAGCCCAAAGGCAGGAACTTC.........................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGGCC---------AAACAATCC---GGCAGCCCAA......................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................GGAGTG--------------------------------------------------------------------------------------GAGC--------------------------------------TGGAGTTGTT...............................................................................................................................................................................................................................................................................................................................................................................................................	20	4	0.25	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

GCA--------------------------------------------------------------------------------------------TAGGGAGTG--------------------------------------------------------------------------------------GAGC--------------------------------------TGGAGTTGCATTGATTTTTACC-CGT----TTTT-------------------------------C-----------------------GGGGCTAC-CG--------------ACTGTGCGAAATGTT-----------------------------------------------------------------------------ACTCACATTCTTGAA----------TTCC--AC--T----------CTGCTACTTCAACAGATATCGGCC---------AAACAATCC---GGCAGCCCAAAGGCAGGAACTTCTCCATTGGA--------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
.......................................................................................................................................................................................................................................................................................................................................AC-CG--------------ACTGTGCGAAATGT.........................................................................................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCCCAAAGGCAGGAACTTCTCCATTG..................................................................................	27	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................AC-CG--------------ACTGTGCGAAATGTT-----------------------------------------------------------------------------A..........................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................AC-CG--------------ACTGTGCGAAATGTT-----------------------------------------------------------------------------ACTCA......................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCC---GGCAGCCCAAAGGCAGG...............................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................C---GGCAGCCCAAAGGCAGGAACTTCT........................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................AC-CG--------------ACTGTGCGAAATGTT-----------------------------------------------------------------------------ACTCAC.....................................................................................................................................................................................................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................GGCTAC-CG--------------ACTGTGCGAAATGTT-----------------------------------------------------------------------------ACTC.......................................................................................................................................................................................................	27	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSec2

C-A--------------------------------------------------------------------------------------------TAGGGAGTG--------------------------------------------------------------------------------------GAGC--------------------------------------TGGAGTTGCATTGATTTTTACC-CGT----TTTT-------------------------------C-----------------------GGGGCTAC-CG--------------ACTGTGCGAAATGTA-----------------------------------------------------------------------------ACTCACATTCTTGAA----------TTCC--AT--T----------CTGCTACTTCAACAGATATCGGCC---------AAACAATCT---GGCAGCCCAAAGGCAGGAACTTCTCCATTGGA--------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CT---GGCAGCCCAAAGGCAGGAACT...........................................................................................	23	1	1.00	1	0	0	1	0
................................................................................................AGGGAGTG--------------------------------------------------------------------------------------GAGC--------------------------------------TGGAGTTGCA...............................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0

droYak3

G-------------------------------------------------------------------------------------------------GAACTG--------------------------------------------------------------------------------------GAGC--------------------------------------TGGAGTTGCATTGATTTTTACC-CGT----TTTT-------------------------------C-----------------------GGTGCTAC-CA--------------ACTCTGCGAAGTGTA-----------------------------------------------------------------------------ACTCACATTCTTGAA----------T---------T----------CTGCTACTTCCACAGATATCGGCC---------AAACAATCC---GGCAGCCCAAAGGCAGGAACCTCTCCATTGGA--------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGGAACCTCTCCATTA..................................................................................	18	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCCCAAAGGCAGGAACCTCTCCA.....................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCAAAGGCAGGAACCT..........................................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAA----------T---------T----------CTGCTACTTCCACAG..............................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAATCC---GGCAGCCCAA......................................................................................................	18	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACAATCC---GGCAGCCCAAAG....................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCCCAAAGGCAGGAACCT..........................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0

droEre2

C-A--------------------------------------------------------------------------------------------TAGGGAGTG--------------------------------------------------------------------------------------GAGC--------------------------------------TGGAGTTGCATTGATTTTTACC-CGT----TT-T-------------------------------C-----------------------GGTGCTAC-CG--------------ACTCTGCGAAGTGTT-----------------------------------------------------------------------------ACTCACATTCTTGAA----------TTCC--AT--T----------CTGGTACTTTCACAGATATCGGCC---------AAACAATCC---GGCAGCCCAAAGGCTGGAACTTCTCCATTGGA--------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCAAAGGCTGGAACTTCTCCATT...................................................................................	24	1	1.00	1	0	1	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCAAAGGCTGGAACTTCTCCATT...................................................................................	25	1	1.00	1	1	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATATCGGCC---------AAACAATCC---................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCC---GGCAGCCCAAAGGCTGGAA.............................................................................................	23	1	1.00	1	1	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATATCGGCC---------AAACAATCC---GGC.............................................................................................................	22	1	1.00	1	1	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................TGCTAC-CG--------------ACTCTGCGAAGTGTT-----------------------------------------------------------------------------ACA........................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	1	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCACAGATATCGGCC---------AAACA.......................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0

dgr_130

scaffold_14830:4588783-4588933 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads