dgr_13

intron [Dgri\GH18439-in]; utr5 [utr5_plus_12030]; CDS [Dgri\GH18439-cds]; CDS [Dgri\GH18439-cds]; utr3 [utr3_plus_6706]

CAGGAGCGCGAGGATGAGATGCGCGAACTGGCGCTGAAATTGCGGCGCAGGTGAGTAATCAGTTGTGGGTGGCTTTTGTTCTTAGGGAAAGCCCTCTCACATCTCTTTATTCACAGGCGGCGCGAATTGCGCCACAAATATGGAACGCCCTCCAGTGGCAAACTCT ************************************************((((((((..((.((((((.(((((((.((...)).)))))))..)))))).))..))))))))..************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M041 female body	V109 male body
..............................................................................................TCTCACATCTCTTTATTCACAG..................................................	22	0	1	699.00	699	695	4
..............................................................................................TCTCACATCTCTTTATTCACA...................................................	21	0	1	469.00	469	467	2
..................................................GTGAGTAATCAGTTGTGGGTGG..............................................................................................	22	0	1	105.00	105	28	77
..............................................................................................TCTCACATCTCTTTATTCAC....................................................	20	0	1	85.00	85	85	0
...............................................................................................CTCACATCTCTTTATTCACAG..................................................	21	0	1	67.00	67	66	1
...............................................................................................CTCACATCTCTTTATTCACA...................................................	20	0	1	44.00	44	44	0
..............................................................................................TCTCACATCTCTTTATTCACAGT.................................................	23	1	1	32.00	32	30	2
..............................................................................................TCTCACATCTCTTTATTCA.....................................................	19	0	1	12.00	12	12	0
..............................................................................................TCTCACATCTCTTTATTCACAC..................................................	22	1	1	11.00	11	11	0
...............................................................................................CTCACATCTCTTTATTCAC....................................................	19	0	1	8.00	8	8	0
...............................................................................................CTCACATCTCTTTATTCACAGT.................................................	22	1	1	6.00	6	5	1
..................................................GTGAGTAATCAGTTGTGGGTG...............................................................................................	21	0	1	6.00	6	4	2
................................................................................................TCACATCTCTTTATTCACAG..................................................	20	0	1	6.00	6	6	0
..................................................GTGAGTAATCAGTTGTGGGT................................................................................................	20	0	1	4.00	4	1	3
................................................................................................TCACATCTCTTTATTCACA...................................................	19	0	1	4.00	4	4	0
...............................................................................................CTCACATCTCTTTATTCACAGTT................................................	23	2	1	4.00	4	4	0
..............................................................................................TCTCACATCTCTATATTCACAG..................................................	22	1	1	4.00	4	4	0
..................................................GTGAGTAATCAGTTGTGGGTGT..............................................................................................	22	1	1	3.00	3	0	3
..................................................GTGAGTAATCAGTTGTGGGTT...............................................................................................	21	1	1	3.00	3	2	1
..................................................GTGAGTAATCAGTTGTGGGTGGC.............................................................................................	23	0	1	3.00	3	1	2
...................................................TGAGTAATCAGTTGTGGGTGG..............................................................................................	21	0	1	2.00	2	1	1
...............................................................................................CTCACATCTCTTTATTCACAGA.................................................	22	1	1	2.00	2	2	0
..................................................................................................ACATCTCTTTATTCACAG..................................................	18	0	1	2.00	2	2	0
..................................................GTGAGTAATCAGTTGTGGG.................................................................................................	19	0	1	2.00	2	1	1
..............................................................................................TCTCACATCTCTTTATTCACAGA.................................................	23	1	1	2.00	2	2	0
.................................................................................................CACATCTCTTTATTCACAG..................................................	19	0	1	2.00	2	2	0
..................................................GTGAGTAACCAGTTGTGGGTGG..............................................................................................	22	1	1	2.00	2	0	2
..............................................................................................TCTCACATCTCTTTATTC......................................................	18	0	1	2.00	2	2	0
.............................................................................................CTCTCACATCTCTTTATTCACAG..................................................	23	0	1	2.00	2	2	0
.............................................................................................GTCTCACATCTCTTTATTCACAG..................................................	23	1	1	2.00	2	2	0
..............................................................................................TCTCACATCTCTATATTCACA...................................................	21	1	1	2.00	2	2	0
..................................................GTGAGTAATCAGTTGTGGGTTT..............................................................................................	22	2	1	2.00	2	0	2
..............................................................................................TCTCACATCTCTTTATTCACAA..................................................	22	1	1	2.00	2	2	0
..................................................GTGAGTAATCAGTTGTGGGTGGCT............................................................................................	24	0	1	1.00	1	1	0
..............................................................................................TCTCACATCTCTTTATTCACAGTA................................................	24	2	1	1.00	1	1	0
............................................................................................ATTCTCACATCTCTTTATTCACAG..................................................	24	2	1	1.00	1	1	0
..................................................GTGAGTAATCAGTTGTGAGTGT..............................................................................................	22	2	1	1.00	1	0	1
..............................................................................................TCTCACACCTCTTTATTCACAG..................................................	22	1	1	1.00	1	1	0
...................................................TGAGTAATCAGTTGTGGGTGGAT............................................................................................	23	1	1	1.00	1	0	1
..................................................TTGAGTAATCAGTTGTGGGTGG..............................................................................................	22	1	1	1.00	1	0	1
..............................................................................................TCTCACATCTCTATATTCACAGT.................................................	23	2	1	1.00	1	1	0
..................................................GTGAGCAATCAGTTGTGGGTGG..............................................................................................	22	1	1	1.00	1	0	1
..................................................GCGAGTAATCAGTTGTGGGTGG..............................................................................................	22	1	1	1.00	1	1	0
..................................................GTGAGTAATCAGTTGTGGGTGGA.............................................................................................	23	1	1	1.00	1	0	1
..............................................................................................TCTCACATCTCTTTATTCAAA...................................................	21	1	1	1.00	1	1	0
..................................................GTGAGTAATCAGTTGTGGGTGTA.............................................................................................	23	2	1	1.00	1	0	1
............................................................................................CCTCTCACATCTCTTTATTCACAG..................................................	24	0	1	1.00	1	1	0
..............................................................................................TCTCACATCTCTTTATTCACAGAA................................................	24	2	1	1.00	1	1	0
.............................................................................................CTCTCACATCTCTTTATTCACA...................................................	22	0	1	1.00	1	1	0
..............................................................................................TCCCACATCTCTTTATTCACAG..................................................	22	1	1	1.00	1	0	1
..............................................................................................TCTCACATCTCTTTATTCACAAA.................................................	23	2	1	1.00	1	1	0
.............................................................................................TTCTCACATCTCTTTATTCACAG..................................................	23	1	1	1.00	1	1	0
.............................................................................................TTCTCACATCTCTTTATTCACA...................................................	22	1	1	1.00	1	1	0
.............................................................................................ATCTCACATCTCTTTATTCACAG..................................................	23	1	1	1.00	1	1	0
..............................................................................................TCTCACATCTCTTTATTCACAGGAAG..............................................	26	2	1	1.00	1	1	0
............................................................................................AGTCTCACATCTCTTTATTCACA...................................................	23	2	1	1.00	1	1	0
..................................................GTGAGTCATCAGTTGTGGGTGG..............................................................................................	22	1	1	1.00	1	0	1
..............................................................................................TCTCACATCTCTTTATTCACATTG................................................	24	3	1	1.00	1	1	0
..............................................................................................TCTCACATCTCTTTATTCACAT..................................................	22	1	1	1.00	1	1	0
..................................................GTGAGTAATCAGTTGTGGGTGGCA............................................................................................	24	1	1	1.00	1	0	1
...................................................TGAGTAATCAGTTGTGGGTGGT.............................................................................................	22	1	1	1.00	1	0	1
..............................................................................................TCTCACATCTCTGTATTCACA...................................................	21	1	1	1.00	1	1	0
.............................................................................................ATCTCACATCTCTTTATTCA.....................................................	20	1	1	1.00	1	1	0
..............................................................................................TCTCACATCTCTTTATTCACAAAAG...............................................	25	3	1	1.00	1	1	0
..................................................GTGAGTAATCAGTTGTGTGTGG..............................................................................................	22	1	1	1.00	1	0	1
.................................................................................................CACATCTCTTTATTCACA...................................................	18	0	1	1.00	1	1	0
................................................................................................TCACATCTCTATATTCACAG..................................................	20	1	1	1.00	1	1	0
............................................................................................ACTCTCACATCTCTTTATTCACA...................................................	23	1	1	1.00	1	1	0
...............................................................................................CTCACATCTCGTTATTCACA...................................................	20	1	1	1.00	1	1	0
.........................................................................................CGGCGTCTCACATCTCTTTATTCACAG..................................................	27	3	1	1.00	1	1	0
.........................................................................................CGGTCTCTCACATCTCTTTATTCACA...................................................	26	3	1	1.00	1	1	0
..............................................................................................TCTTACATCTCTTTATTCACA...................................................	21	1	1	1.00	1	1	0
...............................................................................................CTCACATCTCTTTATTCACAGTGG...............................................	24	2	1	1.00	1	1	0
..............................................................................................ACTCACATCTCTTTATTCACA...................................................	21	1	1	1.00	1	1	0
...............................................................................................CTCACATCTCTTTATTCACAGC.................................................	22	1	1	1.00	1	1	0
...........................................................................................AAGTCTCACATCTCTTTATTCACA...................................................	24	3	1	1.00	1	1	0
..............................................................................................TCTCACATCTCTTTATTCACAGTAA...............................................	25	3	2	0.50	1	1	0
............................................................................................................................................TGGAACGGCCTCTAGTGC........	18	3	20	0.15	3	3	0

GTCCTCGCGCTCCTACTCTACGCGCTTGACCGCGACTTTAACGCCGCGTCCACTCATTAGTCAACACCCACCGAAAACAAGAATCCCTTTCGGGAGAGTGTAGAGAAATAAGTGTCCGCCGCGCTTAACGCGGTGTTTATACCTTGCGGGAGGTCACCGTTTGAGA ************************************************((((((((..((.((((((.(((((((.((...)).)))))))..)))))).))..))))))))..************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V109 male body	M041 female body
.........................................................................................TCGTGAGAGTGTAGAGACGT.........................................................	20	3	15	0.07	1	1	0
............................ACCTCGACTTTAATGGCGC.......................................................................................................................	19	3	18	0.06	1	0	1

Species	Coordinate	ID	Type	Alignment
droGri2	scaffold_14906:5529249-5529415 -	dgr_13	confident	CAGGAGCGCGAGGATGAGATGCGCGAACTGGCGCTGAAATTGCGGCGCAGGTGAGTAAT-CAGTTGTGGGTGGCTTTTGTTCTTA-GGGAA--AGCCCTCTCACATCTCTTTATTCACAGGCGGCGCGAATTGCGCCACAAATATGGAACGCCCTCCAGTGGCAAACTCTC
droVir3	scaffold_13047:780897-781055 +	dvi-mir-1003	Known_mirbase	CAGGAACGCGAGGATGAGATGCGCGAGCTCGCGCTAAAGCTGCGTCGTAGGTGAGTAAT-CAGTTGTGGGTGGCTTTT------T---GAA--AGCCCTCTCACATCTCTTTATTCACAGGCGGCGTGAGTTGCGGCACAAATATGGAACGCCGTCCAGCGGCAAACTCTC
droMoj3	scaffold_6540:4775633-4775791 +	dmo_29	confident	CAGGAGCGCGAGGACGAGATGCGCGAGCTGGCGCTCAAGCTGCGGCGCAGGTGAGTAAT-CAGTTGTGGGTGGCTCTA------G-----TGAAGCCCTCTCACATCTCTTTATTCACAGGCGGCGAGAGTTGCGCCACAAGTACGGCACGCCGTCCAGTGGCAAGCTCTC
droWil2	scf2_1100000004902:9616786-9616946 -	dwi_34	confident	CAGGAGCGTGAAGATGAGATGAGAGAATTGGCGCTAAAGTTGCGCCGTAGGTGAGTATC-GGGTTGTGATTGGCTCCT------TGTGG-T--AGTCCTCTCACATCTCTATATTCACAGGCGTCGCGAGCTGCGTCACAAATATGGAACACCCTCTAGTGGTAAATTGTC
dp5	2:1751523-1751682 -	dps_246	confident	CAGGAGCGCGAGGATGAGATGCGCGAACTGGCGCTGAAGCTACGTAGAAGGTGGGTATCGTGCTTGTGGGTGGCTCTT------G---GTC--AGTCCTCTCACATCTCTATATTCACAGGCGCCGCGAGTTGCGGCACAAGTACGGCACGCCCTCCAGTGGCAAGCTGTC
droPer2	scaffold_7:1904934-1905093 -	dpe_337	confident	CAGGAGCGCGAGGATGAGATGCGCGAACTGGCGCTGAAGCTACGTAGAAGGTGGGTATCGTGCTTGTGGGTGGCTCTT------G---GTC--AGTCCTCTCACATCTCTATATTCACAGGCGCCGCGAGTTGCGACACAAGTACGGCACGCCCTCCAGTGGCAAGCTGTC
droAna3	scaffold_13340:4690290-4690453 -	dan_260	confident	CAGGAGCGGGAAGACGAGATGCGCGAACTGGCGCTCAAGCTACGCCGAAGGTGAGTATAGTGGATGTGGGTGGCTCTTA-----TTTGGCC--GGTCCTCTCACATCTCCATATTCACAGGCGTCGAGAGCTGCGCCACAAGTATGGTACGCCCTCCAGCGGAAAACTTTC
droBip1	scf7180000396359:499256-499420 +			CAGGAGCGCGAAGACGAGATGCGTGAACTGGCGCTAAAGTTACGCCGAAGGTGAGTATAGTGGATGTGGGTGGCTCTAA---A-TATGGCC--AGTCCTCTCACATCTCCATATTCACAGGCGTCGCGAGCTGCGCCACAAGTATGGCACGCCCTCCAGCGGCAAACTGTC
droKik1	scf7180000302388:1718874-1719035 -			CAGGAGCGAGAGGACGAGATGCGGGAGCTGGCGCTGAAACTGCGTCGAAGGTGAGTATTGTGGGTGTGGGTGGCTCTG------G-CGGCC--AGTCCTCTCACATCACCATATTCACAGGCGTCGCGAGCTACGCCACAAATACGGCACGCCCTCCAGCGGAAAGCTCTC
droFic1	scf7180000454106:1827812-1827968 -			CAAGAGCGCGAGGACGAGATGCGTGAACTGGCGCTGAAGCTGCGCAGAAGGTGAGTATC-TGGATGTGACTGGCTCTT------G-----C--GGTCCTCTCACATCTAGTTATTCTCAGGCGCCGTGAGCTGCGACACAAATACGGAACGCCATCGAGCGGCAAGCTATC
droEle1	scf7180000491194:539698-539857 +			CAGGAACGTGAGGACGAGATGCGCGAACTGGCGCTGAAGCTGCGCAGGAGGTGAGTATC-TTGATGTGGTTGGCTCTT------C-TGG-G--CGTCCTCTCACATCTACATATTCACAGGCGGCGTGAGCTGCGCCACAAGTATGGGACCCCTTCGAGCGGCAAGCTCTC
droRho1	scf7180000779488:582408-582564 +			CAGGAGCGTGAAGACGAGATGCGTGAACTGGCGCTGAAGCTGCGCAGGAGGTGAGTATC-TTGATGTGGTCGGCTTTA------G-----C--GGTCCTCTCACATCTACATATTCACAGGCGCCGTGAGCTGCGTCACAAGTATGGTACACCCTCGAGTGGAAAGCTGTC
droBia1	scf7180000302402:4263746-4263902 +			CAGGAACGCGAGGACGAGATGCGTGAGCTGGCGCTGAAGCTGCGCAGAAGGTGGGTATT-TTGATGTGGTTGGCTCTG------G-----C--GGTCCTCTCACATCTATATATTCACAGGCGTCGTGAGCTGCGGCACAAATATGGCACGCCCTCCAGCGGCAAGCTCTC
droTak1	scf7180000415310:656290-656446 -			CAGGAGCGCGAGGACGAGATGCGTGAGCTGGCGCTGAAGCTGCGCAGGAGGTGGGTATC-TGGATGTGGTTGGCTCTG------G-----C--GGTCCTCTCACATCTACATATTCACAGGCGTCGTGAGCTGCGACACAAATACGGAACGCCCTCGAGCGGCAAGCTTTC
droEug1	scf7180000409881:208805-208961 +			CAGGAGCGTGAGGACGAGATGCGTGAGTTGGCTTTGAAGCTGCGCAGGAGGTGGGTATC-TTGATGTGGTTGGCTCCG------G-----C--TGTCCTCTCACATCTGTATATTCACAGGCGTCGTGAGCTGCGTCACAAGTATGGAACGCCCTCAAGCGGCAAGCTGTC
dm3	chr3R:20484277-20484433 +	dme-mir-1003	Known_mirbase	CAGGAACGCGAGGATGAGATGCGCGAACTGGCCCTCAAGCTGCGCAGAAGGTGGGTATC-TGGATGTGGTTGGCTCTG------G-----C--GGTCCTCTCACATTTACATATTCACAGGCGCCGTGAGCTGCGTCACAAATATGGAACGCCCTCGAGTGGAAAGCTCTC
droSim2	x:5236378-5236534 -	dsi-mir-1003	Known_mirbase	CAGGAGCGCGAGGATGAGATGCGCGAACTGGCACTGAAGCTGCGCAGAAGGTGGGTATC-TGGATGTGGTTGGCTCTG------G-----C--GGTCCTCTCACATTTACATATTCACAGGCGCCGTGAGCTGCGTCACAAATATGGAACGCCCTCAAGTGGAAAGCTCTC
droSec2	scaffold_0:20818669-20818825 +	dse_60	confident	CAGGAGCGCGAGGATGAGATGCGAGAACTGGCACTGAAGCTGCGCAGAAGGTGGGTATC-TGGATGTGGTTGGCTCTG------G-----C--GGTCCTCTCACATTTACATATTCACAGGCGCCGTGAGCTGCGTCACAAATATGGAACGCCCTCGAGTGGAAAGCTCTC
droYak3	3R:26013166-26013322 -	dya_39	confident	CAGGAGCGCGAGGACGAGATGCGTGAACTGGCTCTGAAGCTGCGCAGAAGGTGGGTATC-TGGATGTGGTTGGCTCTG------G-----C--GGTCCTCTCACATTTACATATTCACAGGCGTCGTGAGCTGCGACACAAATATGGAACGCCCTCGAGTGGAAAGCTCTC
droEre2	scaffold_4820:7574063-7574219 -	der_58	confident	CAGGAGCGCGAGGACGAGATGCGTGAACTGGCCCTGAAACTGCGCAGAAGGTGGGTATC-TGGATGTGGTTGGCTCTG------G-----C--GGTCCTCTCACATTTACATATTCACAGGCGCCGTGAGCTGCGTCACAAGTACGGAACGCCCTCGAGTGGAAAGCTCTC

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droGri2

CAGGAGCGCGAGGATGAGATGCGCGAACTGGCGCTGAAATTGCGGCGCAGGTGAGTAAT-CAGTTGTGGGTGGCTTTTGTTCTTA-GGGAA--AGCCCTCTCACATCTCTTTATTCACAGGCGGCGCGAATTGCGCCACAAATATGGAACGCCCTCCAGTGGCAAACTCTC	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
..................................................................................................TCTCACATCTCTTTATTCACAG...................................................	22	1	699.00	699	695	4
..................................................................................................TCTCACATCTCTTTATTCACA....................................................	21	1	469.00	469	467	2
..................................................GTGAGTAAT-CAGTTGTGGGTGG..................................................................................................	22	1	105.00	105	28	77
..................................................................................................TCTCACATCTCTTTATTCAC.....................................................	20	1	85.00	85	85	0
...................................................................................................CTCACATCTCTTTATTCACAG...................................................	21	1	67.00	67	66	1
...................................................................................................CTCACATCTCTTTATTCACA....................................................	20	1	44.00	44	44	0
..................................................................................................TCTCACATCTCTTTATTCACAGT..................................................	23	1	32.00	32	30	2
..................................................................................................TCTCACATCTCTTTATTCA......................................................	19	1	12.00	12	12	0
..................................................................................................TCTCACATCTCTTTATTCACAC...................................................	22	1	11.00	11	11	0
...................................................................................................CTCACATCTCTTTATTCAC.....................................................	19	1	8.00	8	8	0
...................................................................................................CTCACATCTCTTTATTCACAGT..................................................	22	1	6.00	6	5	1
..................................................GTGAGTAAT-CAGTTGTGGGTG...................................................................................................	21	1	6.00	6	4	2
....................................................................................................TCACATCTCTTTATTCACAG...................................................	20	1	6.00	6	6	0
..................................................GTGAGTAAT-CAGTTGTGGGT....................................................................................................	20	1	4.00	4	1	3
....................................................................................................TCACATCTCTTTATTCACA....................................................	19	1	4.00	4	4	0
...................................................................................................CTCACATCTCTTTATTCACAGTT.................................................	23	1	4.00	4	4	0
..................................................GTGAGTAAT-CAGTTGTGGGTGT..................................................................................................	22	1	3.00	3	0	3
..................................................GTGAGTAAT-CAGTTGTGGGTT...................................................................................................	21	1	3.00	3	2	1
..................................................GTGAGTAAT-CAGTTGTGGGTGGC.................................................................................................	23	1	3.00	3	1	2
...................................................TGAGTAAT-CAGTTGTGGGTGG..................................................................................................	21	1	2.00	2	1	1
...................................................................................................CTCACATCTCTTTATTCACAGA..................................................	22	1	2.00	2	2	0
......................................................................................................ACATCTCTTTATTCACAG...................................................	18	1	2.00	2	2	0
..................................................GTGAGTAAT-CAGTTGTGGG.....................................................................................................	19	1	2.00	2	1	1
..................................................................................................TCTCACATCTCTTTATTCACAGA..................................................	23	1	2.00	2	2	0
.....................................................................................................CACATCTCTTTATTCACAG...................................................	19	1	2.00	2	2	0
..................................................................................................TCTCACATCTCTTTATTC.......................................................	18	1	2.00	2	2	0
.................................................................................................CTCTCACATCTCTTTATTCACAG...................................................	23	1	2.00	2	2	0
..................................................GTGAGTAAT-CAGTTGTGGGTTT..................................................................................................	22	1	2.00	2	0	2
..................................................................................................TCTCACATCTCTTTATTCACAA...................................................	22	1	2.00	2	2	0
..................................................GTGAGTAAT-CAGTTGTGGGTGGCT................................................................................................	24	1	1.00	1	1	0
..................................................................................................TCTCACATCTCTTTATTCACAGTA.................................................	24	1	1.00	1	1	0
..................................................GTGAGTAAT-CAGTTGTGGGTGGA.................................................................................................	23	1	1.00	1	0	1
..................................................GTGAGTAAT-CAGTTGTGGGTGTA.................................................................................................	23	1	1.00	1	0	1
................................................................................................CCTCTCACATCTCTTTATTCACAG...................................................	24	1	1.00	1	1	0
..................................................................................................TCTCACATCTCTTTATTCACAGAA.................................................	24	1	1.00	1	1	0
.................................................................................................CTCTCACATCTCTTTATTCACA....................................................	22	1	1.00	1	1	0
..................................................................................................TCTCACATCTCTTTATTCACAAA..................................................	23	1	1.00	1	1	0
..................................................................................................TCTCACATCTCTTTATTCACATTG.................................................	24	1	1.00	1	1	0
..................................................................................................TCTCACATCTCTTTATTCACAT...................................................	22	1	1.00	1	1	0
..................................................GTGAGTAAT-CAGTTGTGGGTGGCA................................................................................................	24	1	1.00	1	0	1
...................................................TGAGTAAT-CAGTTGTGGGTGGT.................................................................................................	22	1	1.00	1	0	1
.....................................................................................................CACATCTCTTTATTCACA....................................................	18	1	1.00	1	1	0
...................................................................................................CTCACATCTCTTTATTCACAGC..................................................	22	1	1.00	1	1	0
..................................................................................................TCTCACATCTCTTTATTCACAGTAA................................................	25	2	0.50	1	1	0

droVir3

CAGGAACGCGAGGATGAGATGCGCGAGCTCGCGCTAAAGCTGCGTCGTAGGTGAGTAAT-CAGTTGTGGGTGGCTTTT------T---GAA--AGCCCTCTCACATCTCTTTATTCACAGGCGGCGTGAGTTGCGGCACAAATATGGAACGCCGTCCAGCGGCAAACTCTC	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells	SRR2096013 Ovary_Strain_9_oxidized	SRR2096014 Ovary_Strain_160_oxidized	SRR2096026 embryo_0-2h from 14 day old Strain 9 mothers	SRR2096038 embryo_0-2h from 14 day old Strain 9 mothers	SRR2096050 embryo_0-2h from 14 day old Strain 160 mothers	SRR2096055 Ovary_Min_43	SRR2096056 Ovary_Min_46	SRR2096057 Ovary_Min_50	SRR2096058 Ovary_Min_98	SRR2096059 Ovary_Min_164	SRR2096060 Ovary_Min_193	SRR2096061 embryo_0-2h from 14 day old Strain 160 mothers	SRR2096072 embryo_0-2h from 15to16 day old dysgenic mothers	SRR2096079 embryo_0-2h from 15to16 day old dysgenic mothers	SRR2096080 embryo_0-2h from 15to16 day old nondysgenic mothers	SRR2096081 embryo_0-2h from 15to16 day old nondysgenic mothers
..................................................................................................TCTCACATCTCTTTATTCACAG...................................................	22	1	67997.00	67997	124	764	9792	81	145	51	51	0	14	0	5	4	47	23	1217	431	163	422	550	261	254	566	405	368	1883	1454	2059	2164	3282	2752	1340	3964	1142	148	952	610	859	746	358	402	3	11	6	7	4	15	4	6	7	11	19	34	28	33	31	6	9	11	131	38	204	38	0	1674	13324	228	217	209	2303	2224	1067	1385	1889	2119	155	118	138	205	233
..................................................................................................TCTCACATCTCTTTATTCACA....................................................	21	1	11458.00	11458	6	63	3200	39	16	13	2	0	1	0	2	0	14	7	835	321	127	290	340	182	28	333	161	30	330	245	318	253	573	501	375	693	141	26	176	79	207	110	34	76	1	2	2	0	4	3	0	0	1	5	2	15	8	14	19	7	8	5	37	20	196	20	0	14	457	69	78	44	11	16	9	9	14	13	45	21	38	42	62
..................................................................................................TCTCACATCTCTTTATTCACAGT..................................................	23	1	4576.00	4576	7	9	271	8	163	32	66	0	58	0	9	11	24	21	85	48	13	40	42	26	109	53	48	296	180	142	161	244	212	201	90	244	53	85	67	25	82	80	221	187	0	0	4	3	0	0	1	0	0	1	4	5	2	8	4	7	3	3	18	5	52	55	0	105	148	10	18	18	63	83	40	41	42	58	16	2	7	17	20
..................................................GTGAGTAAT-CAGTTGTGGGTGG..................................................................................................	22	1	2028.00	2028	1	1	196	41	67	77	41	1	4	146	190	0	0	4	0	0	2	5	2	0	0	0	11	1	0	0	55	60	0	0	22	60	0	49	0	1	2	0	76	23	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	109	78	683	0	2	4	0	0	2	0	0	2	0	6	0	3	1	0	0	0
..................................................................................................TCTCACATCTCTTTATTCAC.....................................................	20	1	1643.00	1643	1	27	454	10	3	2	0	0	0	0	0	0	1	2	153	82	35	62	67	35	3	72	31	1	23	24	38	22	68	69	51	83	15	4	27	7	34	7	7	6	0	0	0	0	0	0	1	0	1	0	0	0	0	0	1	1	1	1	3	1	35	0	0	0	4	5	6	9	1	4	2	0	6	3	10	1	3	9	9
...................................................................................................CTCACATCTCTTTATTCACAG...................................................	21	1	1209.00	1209	0	0	943	2	0	0	1	0	0	0	0	0	0	0	7	2	1	0	0	0	0	0	3	3	4	4	10	14	12	5	5	9	7	0	4	0	4	2	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	8	132	0	1	0	6	5	6	2	2	1	0	0	0	1	0
...................................................................................................CTCACATCTCTTTATTCACAGT..................................................	22	1	565.00	565	0	1	44	3	13	2	10	0	2	0	0	1	4	2	12	4	2	2	5	1	10	3	2	22	15	9	30	31	22	17	7	18	3	5	3	6	1	3	12	16	0	0	0	0	0	0	0	0	0	1	1	0	1	1	1	1	2	0	0	0	5	7	0	7	11	1	1	1	38	39	26	27	20	29	0	0	0	0	2
..................................................................................................TCTCACATCTCTTTATTCACAGA..................................................	23	1	493.00	493	0	1	66	9	1	0	0	0	0	0	0	0	0	0	6	2	1	4	2	1	1	3	0	2	3	7	9	7	27	27	23	43	9	0	7	3	10	9	0	1	1	1	0	1	2	2	2	2	2	0	3	9	8	9	7	4	2	2	13	1	0	1	0	39	23	12	3	9	8	7	2	1	5	4	2	1	3	4	14
..................................................................................................TCTCACATCTCTTTATTCACAA...................................................	22	1	429.00	429	0	0	117	1	0	0	0	0	0	0	0	0	1	0	2	1	0	0	0	1	1	1	0	0	19	8	22	12	12	17	13	28	22	0	18	8	32	6	2	3	0	0	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	1	0	0	1	0	0	17	13	8	11	4	0	1	0	1	0	0	1	4	1	6	11
...................................................................................................CTCACATCTCTTTATTCACA....................................................	20	1	356.00	356	0	0	333	1	0	0	0	0	0	0	0	0	0	0	2	2	0	1	2	1	0	2	0	0	2	2	1	1	2	2	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................GTGAGTAAT-CAGTTGTGGGTG...................................................................................................	21	1	304.00	304	7	3	49	4	17	19	25	0	0	16	7	3	1	12	0	0	0	0	0	0	0	0	0	0	0	0	9	9	0	0	7	9	0	6	0	0	3	0	15	10	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	21	7	29	0	0	0	0	0	1	0	0	8	3	1	0	1	1	0	1	0
..................................................................................................TCTCACATCTCTTTATTCA......................................................	19	1	195.00	195	0	3	8	1	0	0	0	0	0	0	0	0	0	0	19	13	7	3	6	1	0	7	14	3	4	1	11	3	21	15	6	23	2	0	2	0	6	1	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	3	0	0	0	4	0	0	0	0	0	2	0	2	0	0	0	0	0	0
....................................................................................................TCACATCTCTTTATTCACAG...................................................	20	1	165.00	165	0	0	61	0	2	0	1	0	0	0	0	0	0	0	5	3	0	4	0	0	0	5	1	1	0	2	4	2	4	4	2	2	3	2	2	0	1	1	2	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	6	32	0	0	0	1	2	0	1	1	1	0	0	0	1	0
..................................................................................................TCTCACATCTCTTTATTCACC....................................................	21	1	145.00	145	8	7	47	0	0	2	0	0	0	0	0	0	0	0	6	3	0	2	3	1	1	5	3	0	0	3	0	1	17	5	7	14	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	2	0	0	0	0	1	1	1
..................................................................................................TCTCACATCTCTTTATTCACAT...................................................	22	1	145.00	145	0	0	8	0	0	0	0	0	0	0	0	1	0	0	21	2	3	6	13	8	11	18	5	8	1	3	6	1	4	2	1	2	2	3	0	1	0	2	2	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	1	0	0	0	2	0	1	0	0	0	0	0	2	1	0	0	0	0	0
..................................................................................................TCTCACATCTCTTTATTCACAC...................................................	22	1	140.00	140	1	14	28	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	2	0	3	2	10	3	14	6	5	9	3	0	1	2	1	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0	2	9	4	1	2	2	1	0	0	2	1	0	0	1	1	0
..................................................................................................TCTCACATCTCTTTATTCACAGTT.................................................	24	1	131.00	131	0	0	14	1	1	1	1	0	0	0	0	0	1	0	6	2	1	4	1	2	3	4	2	6	4	2	12	7	9	5	1	6	1	2	1	0	0	0	5	2	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	1	2	0	7	8	1	0	1	2	0	0	0	0	0	1	0	0	0	0
.................................................................................................CTCTCACATCTCTTTATTCACAG...................................................	23	1	112.00	112	0	0	35	0	0	0	0	0	0	0	0	0	0	0	3	0	1	1	0	0	0	1	0	0	12	0	8	3	8	6	1	15	4	0	5	1	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	1	0	0	0	0	0	0	0	0	0	0	0
..................................................GTGAGTAAT-CAGTTGTGGGTGGT.................................................................................................	23	1	103.00	103	0	0	3	1	3	4	3	0	0	12	12	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	2	1	0	0	0	1	0	3	0	0	0	0	9	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	15	1	31	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................CACATCTCTTTATTCACAG...................................................	19	1	83.00	83	0	0	38	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	2	1	2	1	0	0	0	1	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	33	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...................................................................................................CTCACATCTCTTTATTCACAGA..................................................	22	1	67.00	67	1	0	12	1	0	1	0	0	0	0	0	0	0	0	3	1	0	0	0	0	0	0	0	0	1	1	3	5	2	0	0	2	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	1	0	0	1	0	0	0	0	3	1	0	0	0	5	10	1	0	1	1	0	1	1	0	2	1	0	1	1	0
..................................................................................................TCTCACATCTCTTTATTCACAGTAA................................................	25	1	62.00	62	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	5	2	4	3	0	0	0	0	7	0	2	3	11	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6	2	2	1	1	0	0	0	0	0	0	1	1	0	0	2
..................................................................................................TCTCACATCTCTTTATTCACAGTA.................................................	24	1	58.00	58	0	0	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	4	3	2	6	3	0	0	2	0	1	1	2	2	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	3	1	0	0	2	1	1	3	0	5	0	0	0	3	2
..................................................GTGAGTAAT-CAGTTGTGGGTGT..................................................................................................	22	1	56.00	56	0	0	3	0	2	2	2	0	0	0	1	1	0	5	0	0	0	0	0	0	0	0	0	0	0	0	2	1	0	0	0	0	0	1	0	0	1	0	3	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	1	18	0	0	0	0	0	3	0	0	0	0	0	0	1	0	2	0	1
....................................................................................................TCACATCTCTTTATTCACA....................................................	19	1	51.00	51	0	0	28	0	0	0	0	0	0	0	0	0	0	0	3	1	0	1	2	4	0	1	2	0	1	0	0	0	0	0	0	2	0	0	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................TCTCACATCTCTTTATTCACAGAA.................................................	24	1	50.00	50	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	1	0	0	2	4	3	0	1	3	1	4	2	1	0	2	2	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	3	1	2	0	0	3	1	1	2	0	0	0	0	2	1
...................................................TGAGTAAT-CAGTTGTGGGTGG..................................................................................................	21	1	49.00	49	0	0	19	1	0	1	0	1	0	4	4	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	3	0	0	0	0	0	3	0	0	0	0	0	0	1	1	1	0	3
..................................................................................................TCTCACATCTCTTTATTCACAAA..................................................	23	1	42.00	42	0	0	12	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	2	2	0	0	0	5	4	3	0	0	1	0	4	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	1	0	0	0	0	0	0	0	0	0	1	1	0	0	0
...................................................................................................CTCACATCTCTTTATTCAC.....................................................	19	1	40.00	40	0	0	38	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................ACATCTCTTTATTCACAG...................................................	18	1	37.00	37	0	0	15	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	4	0	0	2	1	1	0	0	1	2	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................CTCACATCTCTTTATTCACAGTT.................................................	23	1	31.00	31	0	0	3	0	2	0	0	0	0	0	0	0	0	0	1	0	1	0	0	2	0	1	0	1	2	0	2	3	1	2	0	1	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	3	0	0	0	0	1	0	0	0	1	0	0	0	0	0
..................................................GTGAGTAAT-CAGTTGTGGGT....................................................................................................	20	1	29.00	29	0	0	6	1	1	3	0	0	0	0	1	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	1	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	6	0	0	0	0	0	0	0	0	1	0	0	0	2	0	0	0	0
.................................................................................................CTCTCACATCTCTTTATTCACA....................................................	22	1	28.00	28	0	0	9	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	1	1	0	0	2	1	2	1	4	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................GTGAGTAAT-CAGTTGTGGGTGGA.................................................................................................	23	1	24.00	24	0	0	2	0	0	0	0	0	0	1	7	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................TCTCACATCTCTTTATTC.......................................................	18	1	23.00	23	0	6	1	0	0	0	0	0	0	0	0	0	0	0	0	0	2	1	0	1	0	0	1	0	0	0	0	0	1	2	2	3	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................TCTCACATCTCTTTATTCAA.....................................................	20	1	23.00	23	0	0	9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	2	0	2	0	0	1	0	1	0	0	2	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	1	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................GTGAGTAAT-CAGTTGTGGGTGGC.................................................................................................	23	1	22.00	22	0	0	0	1	0	0	0	0	0	2	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	1	13	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................TCTCACATCTCTTTATTCACAGC..................................................	23	1	22.00	22	0	0	3	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	2	2	2	1	0	0	2	1	2	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................TCTCACATCTCTTTATTCACAGAAA................................................	25	1	18.00	18	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	1	1	1	0	0	0	0	2	0	0	0	2	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	1	1	0	0	1	0	0	0	0	0	0	0	0	0
.....................................................................................................CACATCTCTTTATTCACA....................................................	18	1	18.00	18	0	0	13	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................TCTCACATCTCTTTATTCACAGG..................................................	23	1	17.00	17	0	0	8	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	1	1	1	0	0	0	0	0
....................................................................................................TCACATCTCTTTATTCACAGT..................................................	21	1	16.00	16	0	0	6	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	2	1	0	0	0	0	1	0	0	0	1	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................TCTCACATCTCTTTATTCACATT..................................................	23	1	16.00	16	0	0	0	0	0	1	0	0	1	0	0	0	0	0	2	1	0	2	0	0	0	2	0	4	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................CTCACATCTCTTTATTCACAA...................................................	21	1	15.00	15	0	0	15	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................GTGAGTAAT-CAGTTGTGGGTGA..................................................................................................	22	1	13.00	13	0	0	1	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	1	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................GTGAGTAAT-CAGTTGTGGG.....................................................................................................	19	1	12.00	12	0	1	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0
..................................................................................................TCTCACATCTCTTTATTCACACA..................................................	23	1	11.00	11	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	1	0	1	0	0	1	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................TCTCACATCTCTTTATTCACAAAA.................................................	24	1	11.00	11	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	1	0	1	1	1	1	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................TCTCACATCTCTTTATTCACAGTTA................................................	25	1	11.00	11	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	1	1	0	0	0	0	0	0	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	2	0	0	0	0	0	0	0	0
..................................................................................................TCTCACATCTCTTTATTCAG.....................................................	20	1	8.00	8	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	1	0	1	0	0	1	1	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................CTCACATCTCTTTATTCACC....................................................	20	1	8.00	8	0	0	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................GTGAGTAAT-CAGTTGTGGGTT...................................................................................................	21	1	8.00	8	0	0	1	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................TGAGTAAT-CAGTTGTGGGTGGA.................................................................................................	22	1	8.00	8	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	5	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
..................................................................................................TCTCACATCTCTTTATTCACACC..................................................	23	1	7.00	7	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	1	0	0	0	0	0	0	1	0	0
..................................................GTGAGTAAT-CAGTTGTGGGTGGTC................................................................................................	24	1	6.00	6	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................TCTCACATCTCTTTATTCACT....................................................	21	1	6.00	6	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................TCTCACATCTCTTTATTCACG....................................................	21	1	6.00	6	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	2	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................CTCACATCTCTTTATTCACAGTA.................................................	23	1	5.00	5	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
...................................................TGAGTAAT-CAGTTGTGGGTGGT.................................................................................................	22	1	5.00	5	0	0	0	0	0	0	0	0	0	2	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................CATCTCTTTATTCACAGT..................................................	18	1	5.00	5	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................TGAGTAAT-CAGTTGTGGGTG...................................................................................................	20	1	5.00	5	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................CTCACATCTCTTTATTCACACC..................................................	22	1	4.00	4	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................CTCTCACATCTCTTTATTCACAGT..................................................	24	1	4.00	4	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................CTCTCACATCTCTTTATTCAC.....................................................	21	1	4.00	4	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................CTCACATCTCTTTATTCACAGC..................................................	22	1	4.00	4	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
...................................................................................................CTCACATCTCTTTATTCACAC...................................................	21	1	4.00	4	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................TCTCACATCTCTTTATTCACAGTTC................................................	25	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	2	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................TCTCACATCTCTTTATTCACAGTG.................................................	24	1	3.00	3	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1
................................................................................................CCTCTCACATCTCTTTATTCACAG...................................................	24	1	3.00	3	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................TCACATCTCTTTATTCACAA...................................................	20	1	3.00	3	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................GAGTAAT-CAGTTGTGGGTGG..................................................................................................	20	1	3.00	3	0	0	2	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................TCTCACATCTCTTTATTCACAGTTT................................................	25	1	3.00	3	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
.....................................................................................................CACATCTCTTTATTCACAA...................................................	19	1	3.00	3	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................GTGAGTAAT-CAGTTGTGGGTGC..................................................................................................	22	1	3.00	3	0	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................TCTCACATCTCTTTATTCACACT..................................................	23	2	3.00	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	2	0	0	0	0	0	0	0
..................................................................................................TCTCACATCTCTTTATTCACCC...................................................	22	1	3.00	3	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................GTGAGTAAT-CAGTTGTGG......................................................................................................	18	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0
..................................................................................................TCTCACATCTCTTTATTCACAGGT.................................................	24	1	3.00	3	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
..................................................................................................TCTCACATCTCTTTATTCAGT....................................................	21	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................CTCACATCTCTTTATTCACAGAAA................................................	24	1	2.00	2	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................GTGAGTAAT-CAGTTGTGGGTC...................................................................................................	21	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................CTCACATCTCTTTATTCACAGAA.................................................	23	1	2.00	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
......................................................................................................ACATCTCTTTATTCACAGT..................................................	19	1	2.00	2	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................GTGAGTAAT-CAGTTGTGGGTGTA.................................................................................................	23	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................TCTCACATCTCTTTATTCACAGGCCCG..............................................	27	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................TCACATCTCTTTATTCACAT...................................................	20	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................CTCACATCTCTTTATTCACATT..................................................	22	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

CAGGAGCGCGAGGACGAGATGCGCGAGCTGGCGCTCAAGCTGCGGCGCAGGTGAGTAAT-CAGTTGTGGGTGGCTCTA------G-----TGAAGCCCTCTCACATCTCTTTATTCACAGGCGGCGAGAGTTGCGCCACAAGTACGGCACGCCGTCCAGTGGCAAGCTCTC	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
..................................................................................................TCTCACATCTCTTTATTCACAG...................................................	22	1	19883.00	19883	14055	623	282	325	4556	42
..................................................................................................TCTCACATCTCTTTATTCACA....................................................	21	1	7296.00	7296	4830	373	67	83	1923	20
..................................................................................................TCTCACATCTCTTTATTCAC.....................................................	20	1	1753.00	1753	803	49	17	17	867	0
..................................................................................................TCTCACATCTCTTTATTCACAGT..................................................	23	1	1519.00	1519	549	41	95	134	641	59
..................................................GTGAGTAAT-CAGTTGTGGGTGG..................................................................................................	22	1	1455.00	1455	112	244	23	49	301	726
...................................................................................................CTCACATCTCTTTATTCACAG...................................................	21	1	1218.00	1218	1183	1	2	2	29	1
...................................................................................................CTCACATCTCTTTATTCACA....................................................	20	1	452.00	452	437	0	0	0	15	0
..................................................................................................TCTCACATCTCTTTATTCACAA...................................................	22	1	231.00	231	195	2	0	0	34	0
..................................................................................................TCTCACATCTCTTTATTCACAC...................................................	22	1	209.00	209	53	5	0	2	149	0
...................................................................................................CTCACATCTCTTTATTCACAGT..................................................	22	1	185.00	185	74	7	4	9	85	6
..................................................GTGAGTAAT-CAGTTGTGGGTG...................................................................................................	21	1	179.00	179	34	28	8	4	56	49
..................................................................................................TCTCACATCTCTTTATTCACAGA..................................................	23	1	179.00	179	79	1	0	1	98	0
..................................................................................................TCTCACATCTCTTTATTCACAGC..................................................	23	1	168.00	168	22	3	0	3	140	0
..................................................GTGAGTAAT-CAGTTGTGGGTGGT.................................................................................................	23	1	145.00	145	8	9	2	4	4	118
....................................................................................................TCACATCTCTTTATTCACAG...................................................	20	1	99.00	99	74	4	2	3	16	0
..................................................GTGAGTAAT-CAGTTGTGGGTGT..................................................................................................	22	1	87.00	87	3	13	3	3	16	49
...................................................................................................CTCACATCTCTTTATTCAC.....................................................	19	1	72.00	72	67	0	0	0	5	0
.................................................................................................CTCTCACATCTCTTTATTCACAG...................................................	23	1	68.00	68	37	1	1	0	29	0
..................................................................................................TCTCACATCTCTTTATTCACAGTT.................................................	24	1	55.00	55	19	2	9	4	21	0
..................................................................................................TCTCACATCTCTTTATTCA......................................................	19	1	48.00	48	8	7	3	7	23	0
...................................................................................................CTCACATCTCTTTATTCACAGA..................................................	22	1	46.00	46	18	1	0	0	27	0
..................................................GTGAGTAAT-CAGTTGTGGGTGGC.................................................................................................	23	1	36.00	36	2	2	0	0	7	25
..................................................................................................TCTCACATCTCTTTATTCACC....................................................	21	1	33.00	33	28	0	1	0	4	0
.....................................................................................................CACATCTCTTTATTCACAG...................................................	19	1	32.00	32	24	1	1	0	6	0
....................................................................................................TCACATCTCTTTATTCACA....................................................	19	1	31.00	31	21	4	0	0	6	0
.................................................................................................CTCTCACATCTCTTTATTCACA....................................................	22	1	29.00	29	15	0	0	0	14	0
..................................................................................................TCTCACATCTCTTTATTCAA.....................................................	20	1	26.00	26	24	1	0	0	1	0
..................................................................................................TCTCACATCTCTTTATTCACAGTA.................................................	24	1	26.00	26	6	0	0	0	20	0
..................................................GTGAGTAAT-CAGTTGTGGGT....................................................................................................	20	1	26.00	26	3	0	1	1	1	20
..................................................................................................TCTCACATCTCTTTATTCACG....................................................	21	1	22.00	22	0	0	0	0	22	0
..................................................................................................TCTCACATCTCTTTATTCACAT...................................................	22	1	21.00	21	6	2	5	3	5	0
...................................................................................................CTCACATCTCTTTATTCACAGC..................................................	22	1	20.00	20	5	0	0	0	15	0
..................................................................................................TCTCACATCTCTTTATTCACAGTAA................................................	25	1	20.00	20	14	0	0	0	6	0
...................................................TGAGTAAT-CAGTTGTGGGTGG..................................................................................................	21	1	19.00	19	15	2	0	1	0	1
..................................................GTGAGTAAT-CAGTTGTGGGTGGA.................................................................................................	23	1	18.00	18	1	0	0	1	1	15
...................................................................................................CTCACATCTCTTTATTCACAA...................................................	21	1	15.00	15	15	0	0	0	0	0
......................................................................................................ACATCTCTTTATTCACAG...................................................	18	1	13.00	13	8	0	0	0	5	0
.....................................................................................................CACATCTCTTTATTCACA....................................................	18	1	12.00	12	4	1	0	0	7	0
..................................................................................................TCTCACATCTCTTTATTCACAGG..................................................	23	1	11.00	11	8	0	0	0	3	0
..................................................GTGAGTAAT-CAGTTGTGGG.....................................................................................................	19	1	10.00	10	2	0	0	0	5	3
...................................................................................................CTCACATCTCTTTATTCACAGTT.................................................	23	1	10.00	10	2	0	2	1	5	0
....................................................................................................TCACATCTCTTTATTCAC.....................................................	18	1	9.00	9	6	0	0	0	3	0
..................................................................................................TCTCACATCTCTTTATTCACAAA..................................................	23	1	9.00	9	9	0	0	0	0	0
...................................................TGAGTAAT-CAGTTGTGGGTGGT.................................................................................................	22	1	9.00	9	1	1	0	0	0	7
..................................................GTGAGTAAT-CAGTTGTGGGTT...................................................................................................	21	1	8.00	8	0	3	0	0	0	5
..................................................GTGAGTAAT-CAGTTGTGGGTGGTC................................................................................................	24	1	8.00	8	0	0	0	0	0	8
..................................................GTGAGTAAT-CAGTTGTGGGTGC..................................................................................................	22	1	7.00	7	0	0	0	1	4	2
..................................................................................................TCTCACATCTCTTTATTCACACC..................................................	23	1	7.00	7	0	0	0	0	7	0
..................................................GTGAGTAAT-CAGTTGTGGGTGA..................................................................................................	22	1	7.00	7	0	0	0	0	3	4
..................................................................................................TCTCACATCTCTTTATTCACACT..................................................	23	1	6.00	6	3	0	0	0	3	0
..................................................................................................TCTCACATCTCTTTATTCACAGAA.................................................	24	1	6.00	6	4	0	0	0	2	0
....................................................................................................TCACATCTCTTTATTCACAGT..................................................	21	1	6.00	6	1	0	0	2	3	0
.....................................................................................................CACATCTCTTTATTCACAGT..................................................	20	1	6.00	6	2	0	0	0	4	0
.................................................................................................CTCTCACATCTCTTTATTCAC.....................................................	21	1	5.00	5	1	0	0	0	4	0
...................................................................................................CTCACATCTCTTTATTCACAAA..................................................	22	1	4.00	4	3	0	0	0	1	0
...................................................TGAGTAAT-CAGTTGTGGGTGGA.................................................................................................	22	1	4.00	4	0	2	0	0	0	2
......................................................................................................ACATCTCTTTATTCACAGT..................................................	19	1	4.00	4	1	0	0	1	2	0
..................................................................................................TCTCACATCTCTTTATTC.......................................................	18	1	4.00	4	3	0	0	0	1	0
..................................................GTGAGTAAT-CAGTTGTGGGTGTA.................................................................................................	23	1	4.00	4	0	3	0	0	1	0
...................................................................................................CTCACATCTCTTTATTCACC....................................................	20	1	4.00	4	4	0	0	0	0	0
..................................................GTGAGTAAT-CAGTTGTGGGTGGCT................................................................................................	24	1	4.00	4	1	1	0	0	0	2
..................................................................................................TCTCACATCTCTTTATTCACAAAA.................................................	24	1	3.00	3	3	0	0	0	0	0
.................................................................................................CTCTCACATCTCTTTATTCACAGT..................................................	24	1	3.00	3	2	0	0	0	1	0
....................................................GAGTAAT-CAGTTGTGGGTGG..................................................................................................	20	1	3.00	3	1	0	0	0	1	1
.................................................................................................CTCTCACATCTCTTTATTCACAGA..................................................	24	1	3.00	3	0	0	0	0	3	0
..................................................................................................TCTCACATCTCTTTATTCACATT..................................................	23	1	3.00	3	0	0	1	1	1	0
..................................................GTGAGTAAT-CAGTTGTGGGTGGTA................................................................................................	24	1	3.00	3	0	2	0	1	0	0
..................................................................................................TCTCACATCTCTTTATTCACT....................................................	21	1	3.00	3	0	0	1	0	2	0
...................................................................................................CTCACATCTCTTTATTCACAC...................................................	21	1	3.00	3	2	0	0	0	1	0
..................................................GTGAGTAAT-CAGTTGTGGGTGTT.................................................................................................	23	1	2.00	2	0	1	0	0	0	1
..................................................................................................TCTCACATCTCTTTATTCACACA..................................................	23	1	2.00	2	1	0	0	0	1	0
.......................................................................................................CATCTCTTTATTCACAGC..................................................	18	1	2.00	2	0	0	0	0	2	0
...................................................................................................CTCACATCTCTTTATTCAA.....................................................	19	2	2.00	4	4	0	0	0	0	0
..................................................................................................TCTCACATCTCTTTATTCACAGTTA................................................	25	1	2.00	2	1	0	0	0	1	0
...................................................TGAGTAAT-CAGTTGTGGGTGT..................................................................................................	21	1	2.00	2	0	0	0	0	1	1
...................................................TGAGTAAT-CAGTTGTGGGTGGC.................................................................................................	22	1	2.00	2	0	1	0	0	1	0
....................................................................................................TCACATCTCTTTATTCACAGA..................................................	21	1	2.00	2	1	1	0	0	0	0
..................................................................................................TCTCACATCTCTTTATTCACGC...................................................	22	1	2.00	2	1	0	0	0	1	0
.......................................................................................................CATCTCTTTATTCACAGT..................................................	18	1	2.00	2	0	0	0	0	2	0
..................................................GTGAGTAAT-CAGTTGTGGGTTT..................................................................................................	22	1	2.00	2	0	0	0	0	0	2

droWil2

CAGGAGCGTGAAGATGAGATGAGAGAATTGGCGCTAAAGTTGCGCCGTAGGTGAGTATC-GGGTTGTGATTGGCTCCT------TGTGG-T--AGTCCTCTCACATCTCTATATTCACAGGCGTCGCGAGCTGCGTCACAAATATGGAACACCCTCTAGTGGTAAATTGTC	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
..................................................................................................TCTCACATCTCTATATTCACAG...................................................	22	1	10655.00	10655	3647	4073	8	1898	1029
..................................................................................................TCTCACATCTCTATATTCACA....................................................	21	1	2106.00	2106	242	1163	2	293	406
..................................................GTGAGTATC-GGGTTGTGATTGG..................................................................................................	22	1	757.00	757	8	108	134	241	266
..................................................................................................TCTCACATCTCTATATTCACAGT..................................................	23	1	584.00	584	75	178	10	229	92
..................................................................................................TCTCACATCTCTATATTCAC.....................................................	20	1	321.00	321	80	198	0	17	26
...................................................................................................CTCACATCTCTATATTCACAG...................................................	21	1	316.00	316	5	304	0	3	4
...................................................................................................CTCACATCTCTATATTCACA....................................................	20	1	95.00	95	0	94	0	0	1
..................................................GTGAGTATC-GGGTTGTGATTG...................................................................................................	21	1	85.00	85	4	7	21	39	14
..................................................................................................TCTCACATCTCTATATTCACAC...................................................	22	1	64.00	64	43	17	1	2	1
..................................................................................................TCTCACATCTCTATATTCACAGA..................................................	23	1	51.00	51	16	28	1	4	2
..................................................................................................TCTCACATCTCTATATTCACAA...................................................	22	1	45.00	45	2	31	0	8	4
..................................................................................................TCTCACATCTCTATATTCA......................................................	19	1	34.00	34	12	6	0	4	12
....................................................................................................TCACATCTCTATATTCACAG...................................................	20	1	25.00	25	2	19	0	2	2
...................................................................................................CTCACATCTCTATATTCACAGT..................................................	22	1	21.00	21	1	18	2	0	0
...................................................................................................CTCACATCTCTATATTCAC.....................................................	19	1	18.00	18	0	18	0	0	0
..................................................................................................TCTCACATCTCTATATTCACAGG..................................................	23	1	15.00	15	9	6	0	0	0
..................................................................................................TCTCACATCTCTATATTCACAGC..................................................	23	1	12.00	12	8	2	0	2	0
...................................................TGAGTATC-GGGTTGTGATTGG..................................................................................................	21	1	10.00	10	0	8	1	0	1
.................................................................................................CTCTCACATCTCTATATTCACAG...................................................	23	1	9.00	9	0	7	0	2	0
..................................................GTGAGTATC-GGGTTGTGATTGGT.................................................................................................	23	1	9.00	9	0	1	3	3	2
..................................................................................................TCTCACATCTCTATATTCACAT...................................................	22	1	7.00	7	1	2	0	4	0
.....................................................................................................CACATCTCTATATTCACAG...................................................	19	1	7.00	7	0	7	0	0	0
..................................................GTGAGTATC-GGGTTGTGATT....................................................................................................	20	1	6.00	6	1	2	1	2	0
......................................................................................................ACATCTCTATATTCACAG...................................................	18	1	6.00	6	0	6	0	0	0
.................................................................................................CTCTCACATCTCTATATTCACA....................................................	22	1	5.00	5	0	3	0	2	0
...................................................................................................CTCACATCTCTATATTCACAGA..................................................	22	1	5.00	5	0	5	0	0	0
....................................................................................................TCACATCTCTATATTCACA....................................................	19	1	5.00	5	0	4	0	0	1
..................................................................................................TCTCACATCTCTATATTCACAAA..................................................	23	1	4.00	4	0	4	0	0	0
..................................................................................................TCTCACATCTCTATATTCACAGAA.................................................	24	1	4.00	4	2	1	0	1	0
..................................................................................................TCTCACATCTCTATATTCACAGTA.................................................	24	1	4.00	4	0	2	0	2	0
..................................................................................................TCTCACATCTCTATATTCACAGTT.................................................	24	1	4.00	4	0	1	0	0	3
..................................................GTGAGTATC-GGGTTGTGATTGGA.................................................................................................	23	1	3.00	3	0	1	2	0	0
..................................................................................................TCTCACATCTCTATATTCACACC..................................................	23	1	3.00	3	2	1	0	0	0
.....................................................................................................CACATCTCTATATTCACA....................................................	18	1	3.00	3	0	3	0	0	0
..................................................................................................TCTCACATCTCTATATTCAA.....................................................	20	1	2.00	2	0	2	0	0	0
...................................................................................................CTCACATCTCTATATTCACAA...................................................	21	1	2.00	2	0	2	0	0	0
..................................................................................................TCTCACATCTCTATATTC.......................................................	18	1	2.00	2	0	2	0	0	0
..................................................GTGAGTATC-GGGTTGTGATTT...................................................................................................	21	1	2.00	2	0	1	0	1	0
..................................................................................................TCTCACATCTCTATATTCACAGTAA................................................	25	1	2.00	2	0	1	0	1	0
..................................................................................................TCTCACATCTCTATATTCACC....................................................	21	1	2.00	2	1	0	0	0	1
..................................................................................................TCTCACATCTCTATATTCACG....................................................	21	1	2.00	2	0	1	0	1	0
..................................................................................................TCTCACATCTCTATATTCACAAT..................................................	23	1	2.00	2	0	0	0	0	2
..................................................................................................TCTCACATCTCTATATTCACAGGGC................................................	25	1	2.00	2	2	0	0	0	0
..................................................................................................TCTCACATCTCTATATTCACT....................................................	21	1	2.00	2	2	0	0	0	0
.....................................................................................................CACATCTCTATATTCACAGT..................................................	20	1	2.00	2	0	2	0	0	0
....................................................................................................TCACATCTCTATATTCAC.....................................................	18	1	1.00	1	0	1	0	0	0
...................................................................................................CTCACATCTCTATATTCACAAA..................................................	22	1	1.00	1	0	1	0	0	0
......................................................GTATC-GGGTTGTGATTGGC.................................................................................................	19	1	1.00	1	0	1	0	0	0
.................................................................................................CTCTCACATCTCTATATTC.......................................................	19	1	1.00	1	0	1	0	0	0
.......................................................................................................CATCTCTATATTCACAGT..................................................	18	1	1.00	1	0	1	0	0	0
..................................................GTGAGTATC-GGGTTGTGATTGA..................................................................................................	22	1	1.00	1	0	0	0	0	1
..................................................................................................TCTCACATCTCTATATTCACAGTAC................................................	25	1	1.00	1	0	1	0	0	0
..................................................GTGAGTATC-GGGTTGTGATTGGCTC...............................................................................................	25	1	1.00	1	0	0	1	0	0
..................................................GTGAGTATC-GGGTTGTGATTGGAA................................................................................................	24	1	1.00	1	0	0	1	0	0
.......GTGAAGATGAGATGAGAGAATTGGCG..........................................................................................................................................	26	1	1.00	1	0	0	0	1	0
..................................................GTGAGTATC-GGGTTGTGATTGGCT................................................................................................	24	1	1.00	1	0	0	1	0	0
..................................................GTGAGTATC-GGGTTGTGA......................................................................................................	18	1	1.00	1	0	0	0	1	0
...................................................................................................CTCACATCTCTATATTCACAGTT.................................................	23	1	1.00	1	0	1	0	0	0
..................................................GTGAGTATC-GGGTTGTGATTGGG.................................................................................................	23	1	1.00	1	0	0	1	0	0
...................................................TGAGTATC-GGGTTGTGATTGGT.................................................................................................	22	1	1.00	1	0	0	0	0	1
..................................................GTGAGTATC-GGGTTGTGATTGGC.................................................................................................	23	1	1.00	1	0	0	1	0	0
....................................................................................................TCACATCTCTATATTCACAC...................................................	20	1	1.00	1	0	1	0	0	0
..................................................................................................TCTCACATCTCTATATTCACACT..................................................	23	1	1.00	1	0	1	0	0	0
.................................................................................................CTCTCACATCTCTATATTCA......................................................	20	1	1.00	1	0	1	0	0	0
........................................................ATC-GGGTTGTGATTGGCTC...............................................................................................	19	1	1.00	1	0	0	0	1	0
..................................................................................................TCTCACATCTCTATATTCAT.....................................................	20	1	1.00	1	0	1	0	0	0
.....................................................................................................CACATCTCTATATTCACAC...................................................	19	1	1.00	1	0	1	0	0	0
....................................................GAGTATC-GGGTTGTGATTGG..................................................................................................	20	1	1.00	1	0	1	0	0	0
..................................................................................................TCTCACATCTCTATATTCACAGGC.................................................	24	1	1.00	1	0	0	0	0	1
..................................................................................................TCTCACATCTCTATATTCAAT....................................................	21	1	1.00	1	0	0	0	1	0
...................................................................................................CTCACATCTCTATATTCACAC...................................................	21	1	1.00	1	0	1	0	0	0
...................................................................................................CTCACATCTCTATATTCA......................................................	18	1	1.00	1	0	1	0	0	0

dp5

CAGGAGCGCGAGGATGAGATGCGCGAACTGGCGCTGAAGCTACGTAGAAGGTGGGTATCGTGCTTGTGGGTGGCTCTT------G---GTC--AGTCCTCTCACATCTCTATATTCACAGGCGCCGCGAGTTGCGGCACAAGTACGGCACGCCCTCCAGTGGCAAGCTGTC	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
..................................................................................................TCTCACATCTCTATATTCACAG...................................................	22	1	2900.00	2900	0	1890	243	34	425	211	8	20	28	41
..................................................................................................TCTCACATCTCTATATTCACA....................................................	21	1	1024.00	1024	2	643	61	69	142	94	5	3	3	2
..................................................................................................TCTCACATCTCTATATTCACAGT..................................................	23	1	402.00	402	0	119	49	10	48	145	29	0	1	1
..................................................GTGGGTATCGTGCTTGTGGGTGG..................................................................................................	23	1	223.00	223	0	81	16	7	29	14	26	4	2	44
...................................................................................................CTCACATCTCTATATTCACAG...................................................	21	1	155.00	155	0	152	1	0	1	1	0	0	0	0
..................................................................................................TCTCACATCTCTATATTCACAC...................................................	22	1	117.00	117	0	73	29	11	2	1	1	0	0	0
..................................................................................................TCTCACATCTCTATATTCAC.....................................................	20	1	115.00	115	0	71	12	20	4	8	0	0	0	0
...................................................................................................CTCACATCTCTATATTCACA....................................................	20	1	72.00	72	0	70	1	0	0	1	0	0	0	0
..................................................................................................TCTCACATCTCTATATTCACAGA..................................................	23	1	69.00	69	0	44	9	8	3	2	1	1	1	0
..................................................................................................TCTCACATCTCTATATTCACACC..................................................	23	1	37.00	37	0	20	9	8	0	0	0	0	0	0
..................................................................................................TCTCACATCTCTATATTCACAGC..................................................	23	1	33.00	33	0	2	21	8	2	0	0	0	0	0
..................................................................................................TCTCACATCTCTATATTCACAA...................................................	22	1	16.00	16	0	12	2	0	1	1	0	0	0	0
..................................................GTGGGTATCGTGCTTGTGGGTG...................................................................................................	22	1	16.00	16	0	10	2	1	3	0	0	0	0	0
....................................................................................................TCACATCTCTATATTCACAG...................................................	20	1	15.00	15	0	11	0	0	0	3	0	0	1	0
..................................................GTGGGTATCGTGCTTGTGGGT....................................................................................................	21	1	15.00	15	0	4	1	0	1	2	3	0	3	1
..................................................GTGGGTATCGTGCTTGTGGG.....................................................................................................	20	1	11.00	11	0	6	2	0	1	1	1	0	0	0
..................................................................................................TCTCACATCTCTATATTCACAGTT.................................................	24	1	10.00	10	0	7	0	0	2	0	0	0	1	0
.....................................................................................................CACATCTCTATATTCACAG...................................................	19	1	9.00	9	0	7	0	0	2	0	0	0	0	0
...................................................................................................CTCACATCTCTATATTCACAC...................................................	21	1	9.00	9	0	9	0	0	0	0	0	0	0	0
...................................................................................................CTCACATCTCTATATTCACAGT..................................................	22	1	9.00	9	0	7	0	0	0	0	1	0	0	1
..................................................GTGGGTATCGTGCTTGTGGGTGGC.................................................................................................	24	1	9.00	9	0	5	1	0	1	0	2	0	0	0
..................................................GTGGGTATCGTGCTTGTGG......................................................................................................	19	1	9.00	9	0	6	0	0	0	0	3	0	0	0
..................................................................................................TCTCACATCTCTATATTCA......................................................	19	1	8.00	8	0	2	1	0	1	2	1	0	0	1
..................................................GTGGGTATCGTGCTTGTGGGTGGT.................................................................................................	24	1	7.00	7	0	2	0	0	1	0	1	0	0	3
..................................................................................................TCTCACATCTCTATATTCACACT..................................................	23	1	6.00	6	0	4	1	0	1	0	0	0	0	0
..................................................................................................TCTCACATCTCTATATTCACACA..................................................	23	1	6.00	6	0	5	1	0	0	0	0	0	0	0
..................................................................................................TCTCACATCTCTATATTCACACCA.................................................	24	1	6.00	6	0	5	0	1	0	0	0	0	0	0
......................................................................................................ACATCTCTATATTCACAG...................................................	18	1	5.00	5	0	4	0	0	1	0	0	0	0	0
..................................................................................................TCTCACATCTCTATATTCACAGTA.................................................	24	1	4.00	4	0	4	0	0	0	0	0	0	0	0
..................................................................................................TCTCACATCTCTATATTCACAGG..................................................	23	1	4.00	4	0	2	1	1	0	0	0	0	0	0
..................................................GTGGGTATCGTGCTTGTGGT.....................................................................................................	20	1	4.00	4	0	2	0	0	0	0	2	0	0	0
...................................................TGGGTATCGTGCTTGTGGGTGG..................................................................................................	22	1	4.00	4	0	3	1	0	0	0	0	0	0	0
.................................................................................................CTCTCACATCTCTATATTCACA....................................................	22	1	3.00	3	0	1	0	1	1	0	0	0	0	0
....................................................................................................TCACATCTCTATATTCACA....................................................	19	1	3.00	3	0	0	0	0	0	2	0	0	0	1
...................................................................................................CTCACATCTCTATATTCACAGA..................................................	22	1	3.00	3	0	3	0	0	0	0	0	0	0	0
.................................................................................................CTCTCACATCTCTATATTCACAG...................................................	23	1	3.00	3	0	1	1	0	1	0	0	0	0	0
...................................................................................................CTCACATCTCTATATTCACAGAAA................................................	24	1	2.00	2	0	2	0	0	0	0	0	0	0	0
..................................................GTGGGTATCGTGCTTGTG.......................................................................................................	18	1	2.00	2	0	1	0	0	1	0	0	0	0	0
....................................................................................................TCACATCTCTATATTCACAGTT.................................................	22	1	2.00	2	0	0	0	0	0	0	0	0	2	0
...................................................................................................CTCACATCTCTATATTCACACC..................................................	22	1	2.00	2	0	2	0	0	0	0	0	0	0	0
...................................................................................................CTCACATCTCTATATTCAC.....................................................	19	1	2.00	2	0	2	0	0	0	0	0	0	0	0
....................................................GGGTATCGTGCTTGTGGGTGG..................................................................................................	21	1	2.00	2	0	1	1	0	0	0	0	0	0	0
..................................................................................................TCTCACATCTCTATATTCACAGAA.................................................	24	1	2.00	2	0	1	0	0	0	0	0	0	1	0
..................................................................................................TCTCACATCTCTATATTCACT....................................................	21	1	1.00	1	0	0	0	0	1	0	0	0	0	0
..................................................................................................TCTCACATCTCTATATTCACAGCGA................................................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0
....................................................................................................TCACATCTCTATATTCACAA...................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..................................................GTGGGTATCGTGCTTGTGGGTGGTA................................................................................................	25	1	1.00	1	0	0	0	0	1	0	0	0	0	0
...................................................................................................CTCACATCTCTATATTCACAT...................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.................................................................................................CTCTCACATCTCTATATTCACAGC..................................................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0
.................................................................................................CTCTCACATCTCTATATTCACAGA..................................................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0
..................................................GTGGGTATCGTGCTTGTGT......................................................................................................	19	1	1.00	1	0	0	0	0	0	1	0	0	0	0
.................................................................................................CTCTCACATCTCTATATTCACAGT..................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..................................................GTGGGTATCGTGCTTGTGGGTGGCTCT..............................................................................................	27	1	1.00	1	0	0	0	0	0	1	0	0	0	0
....................................................GGGTATCGTGCTTGTGGGTGGC.................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................TCTCACATCTCTATATTCACCT...................................................	22	1	1.00	1	0	0	0	0	1	0	0	0	0	0
...................................................................................................CTCACATCTCTATATTCACACCA.................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
................................................................................................CCTCTCACATCTCTATATTCACAGT..................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................TCTCACATCTCTATATTC.......................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................CATCTCTATATTCACAGT..................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................TCTCACATCTCTATATTCACATT..................................................	23	1	1.00	1	0	0	0	0	1	0	0	0	0	0
..................................................................................................TCTCACATCTCTATATTCACAGCTT................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................CACATCTCTATATTCACACC..................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0
..................................................GTGGGTATCGTGCTTGTGGGTGGCTC...............................................................................................	26	1	1.00	1	0	0	0	0	0	0	1	0	0	0
..................................................GTGGGTATCGTGCTTGTGGGTGGA.................................................................................................	24	1	1.00	1	0	0	0	0	0	1	0	0	0	0
..................................................GTGGGTATCGTGCTTGTGGGTGGCT................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.........GAGGATGAGATGCGCGAACT..............................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................TCTCACATCTCTATATTCACAGAAA................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...................................................TGGGTATCGTGCTTGTGGGTGGA.................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	1
......................................................................................................ACATCTCTATATTCACAGA..................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...................................................TGGGTATCGTGCTTGTGGGT....................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................CTCACATCTCTATATTCACAGTA.................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................TCACATCTCTATATTCACAGT..................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..................................................GTGGGTATCGTGCTTGTGTA.....................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0

droPer2

CAGGAGCGCGAGGATGAGATGCGCGAACTGGCGCTGAAGCTACGTAGAAGGTGGGTATCGTGCTTGTGGGTGGCTCTT------G---GTC--AGTCCTCTCACATCTCTATATTCACAGGCGCCGCGAGTTGCGACACAAGTACGGCACGCCCTCCAGTGGCAAGCTGTC	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
..................................................................................................TCTCACATCTCTATATTCACAG...................................................	22	1	1166.00	1166	214	520	107	214	109	2
..................................................................................................TCTCACATCTCTATATTCACA....................................................	21	1	339.00	339	5	177	49	73	35	0
..................................................................................................TCTCACATCTCTATATTCACAGT..................................................	23	1	280.00	280	8	47	9	98	116	2
..................................................GTGGGTATCGTGCTTGTGGGTGG..................................................................................................	23	1	113.00	113	3	3	12	15	11	69
..................................................................................................TCTCACATCTCTATATTCACAC...................................................	22	1	57.00	57	5	48	2	2	0	0
...................................................................................................CTCACATCTCTATATTCACAG...................................................	21	1	35.00	35	0	35	0	0	0	0
..................................................................................................TCTCACATCTCTATATTCAC.....................................................	20	1	31.00	31	0	14	1	5	11	0
..................................................................................................TCTCACATCTCTATATTCACACC..................................................	23	1	24.00	24	17	6	1	0	0	0
..................................................................................................TCTCACATCTCTATATTCACAGA..................................................	23	1	21.00	21	2	14	2	1	2	0
...................................................................................................CTCACATCTCTATATTCACA....................................................	20	1	21.00	21	0	20	0	1	0	0
..................................................GTGGGTATCGTGCTTGTGGGT....................................................................................................	21	1	20.00	20	0	1	0	3	3	13
..................................................GTGGGTATCGTGCTTGTGGG.....................................................................................................	20	1	20.00	20	0	1	0	1	3	15
..................................................GTGGGTATCGTGCTTGTGGGTG...................................................................................................	22	1	9.00	9	0	3	3	0	0	3
..................................................................................................TCTCACATCTCTATATTCA......................................................	19	1	6.00	6	0	2	0	1	3	0
..................................................................................................TCTCACATCTCTATATTCACAGTT.................................................	24	1	6.00	6	0	1	1	1	3	0
....................................................................................................TCACATCTCTATATTCACAG...................................................	20	1	6.00	6	0	4	0	1	1	0
..................................................GTGGGTATCGTGCTTGTGG......................................................................................................	19	1	5.00	5	0	0	0	0	1	4
..................................................GTGGGTATCGTGCTTGTGGT.....................................................................................................	20	1	5.00	5	0	0	0	1	0	4
..................................................GTGGGTATCGTGCTTGTGGGTGGC.................................................................................................	24	1	4.00	4	0	0	0	0	0	4
..................................................GTGGGTATCGTGCTTGTGGGTGGT.................................................................................................	24	1	4.00	4	0	0	1	0	0	3
..................................................................................................TCTCACATCTCTATATTCACAT...................................................	22	1	4.00	4	0	2	0	1	1	0
...................................................................................................CTCACATCTCTATATTCAC.....................................................	19	1	4.00	4	0	4	0	0	0	0
.................................................................................................CTCTCACATCTCTATATTCACA....................................................	22	1	3.00	3	0	1	2	0	0	0
...................................................................................................CTCACATCTCTATATTCACAC...................................................	21	1	3.00	3	0	3	0	0	0	0
....................................................................................................TCACATCTCTATATTCACA....................................................	19	1	3.00	3	0	0	1	1	1	0
..................................................GTGGGTATCGTGCTTGTGGGTGGCT................................................................................................	25	1	2.00	2	0	0	0	0	0	2
..................................................................................................TCTCACATCTCTATATTCACAGG..................................................	23	1	2.00	2	0	2	0	0	0	0
..................................................GTGGGTATCGTGCTTGTG.......................................................................................................	18	1	2.00	2	0	1	0	0	1	0
..................................................GTGGGTATCGTGCTTGTGTT.....................................................................................................	20	1	2.00	2	0	0	0	0	0	2
..................................................................................................TCTCACATCTCTATATTCACACT..................................................	23	1	2.00	2	0	0	0	1	1	0
.....................................................................................................CACATCTCTATATTCACA....................................................	18	1	2.00	2	0	2	0	0	0	0
..................................................................................................TCTCACATCTCTATATTCACAGTAA................................................	25	1	2.00	2	0	2	0	0	0	0
.......................................................................................................CATCTCTATATTCACAGT..................................................	18	1	2.00	2	0	1	1	0	0	0
.................................................................................................CTCTCACATCTCTATATTCACAG...................................................	23	1	2.00	2	0	2	0	0	0	0
..................................................GTGGGTATCGTGCTTGTGGGTT...................................................................................................	22	1	2.00	2	0	0	0	0	0	2
...................................................................................................CTCACATCTCTATATTCACAGT..................................................	22	1	2.00	2	0	2	0	0	0	0
...................................................TGGGTATCGTGCTTGTGGGTGG..................................................................................................	22	1	2.00	2	0	1	0	0	0	1
...................................................................................................CTCACATCTCTATATTCACACC..................................................	22	1	2.00	2	0	2	0	0	0	0
..................................................................................................TCTCACATCTCTATATTCACAGC..................................................	23	1	2.00	2	0	0	1	1	0	0
..................................................................................................TCTCACATCTCTATATTCACAGTA.................................................	24	1	1.00	1	0	1	0	0	0	0
...................................................................................................CTCACATCTCTATATTCACAGGTA................................................	24	1	1.00	1	0	1	0	0	0	0
..................................................................................................TCTCACATCTCTATATTCACACTA.................................................	24	1	1.00	1	0	1	0	0	0	0
....................................................................................................TCACATCTCTATATTCACAGT..................................................	21	1	1.00	1	0	0	0	1	0	0
..................................................................................................TCTCACATCTCTATATTCACACA..................................................	23	1	1.00	1	0	1	0	0	0	0
..................................................................................................TCTCACATCTCTATATTCACAGGTA................................................	25	1	1.00	1	0	1	0	0	0	0
..................................................................................................TCTCACATCTCTATATTCACACCA.................................................	24	1	1.00	1	0	1	0	0	0	0
...................................................TGGGTATCGTGCTTGTGGGT....................................................................................................	20	1	1.00	1	0	0	0	0	0	1
....................................................................................................TCACATCTCTATATTCAC.....................................................	18	1	1.00	1	0	1	0	0	0	0
..................................................................................................TCTCACATCTCTATATTCACCTT..................................................	23	1	1.00	1	0	0	0	0	1	0
..................................................................................................TCTCACATCTCTATATTCACAA...................................................	22	1	1.00	1	0	1	0	0	0	0
..................................................................................................TCTCACATCTCTATATTCACATT..................................................	23	1	1.00	1	0	1	0	0	0	0
..................................................GTGGGTATCGTGCTTGTGGC.....................................................................................................	20	1	1.00	1	0	0	0	0	1	0
..................................................GTGGGTATCGTGCTTGTGGGTGGCTCT..............................................................................................	27	1	1.00	1	0	1	0	0	0	0
..................................................GTGGGTATCGTGCTTGTGGGG....................................................................................................	21	1	1.00	1	0	0	0	0	0	1
......................................................................................................ACATCTCTATATTCACAG...................................................	18	1	1.00	1	0	1	0	0	0	0
.......................................................TATCGTGCTTGTGGGTGGT.................................................................................................	19	1	1.00	1	0	0	1	0	0	0

droAna3

CAGGAGCGGGAAGACGAGATGCGCGAACTGGCGCTCAAGCTACGCCGAAGGTGAGTATAGTGGATGTGGGTGGCTCTTA-----TTTGGCC--GGTCCTCTCACATCTCCATATTCACAGGCGTCGAGAGCTGCGCCACAAGTATGGTACGCCCTCCAGCGGAAAACTTTC	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
..................................................................................................TCTCACATCTCCATATTCACAG...................................................	22	1	2399.00	2399	1838	296	108	51	12	94
..................................................................................................TCTCACATCTCCATATTCACA....................................................	21	1	983.00	983	526	303	70	47	8	29
..................................................GTGAGTATAGTGGATGTGGGTGG..................................................................................................	23	1	683.00	683	114	5	0	3	176	385
..................................................................................................TCTCACATCTCCATATTCACAGT..................................................	23	1	593.00	593	260	151	25	75	33	49
..................................................................................................TCTCACATCTCCATATTCAC.....................................................	20	1	316.00	316	79	202	12	8	1	14
...................................................................................................CTCACATCTCCATATTCACAG...................................................	21	1	118.00	118	116	2	0	0	0	0
..................................................................................................TCTCACATCTCCATATTCACAGTT.................................................	24	1	82.00	82	42	11	3	8	2	16
..................................................................................................TCTCACATCTCCATATTCACAGC..................................................	23	1	64.00	64	2	61	0	1	0	0
..................................................................................................TCTCACATCTCCATATTCACAGA..................................................	23	1	62.00	62	19	40	1	0	0	2
..................................................GTGAGTATAGTGGATGTGGGTGGT.................................................................................................	24	1	53.00	53	7	0	0	0	13	33
...................................................................................................CTCACATCTCCATATTCACA....................................................	20	1	38.00	38	36	2	0	0	0	0
...................................................................................................CTCACATCTCCATATTCACAGT..................................................	22	1	30.00	30	25	2	0	0	2	1
..................................................................................................TCTCACATCTCCATATTCACAA...................................................	22	1	28.00	28	8	18	1	1	0	0
...................................................TGAGTATAGTGGATGTGGGTGG..................................................................................................	22	1	24.00	24	8	0	0	1	2	13
..................................................GTGAGTATAGTGGATGTGGGT....................................................................................................	21	1	22.00	22	4	4	1	0	6	7
..................................................................................................TCTCACATCTCCATATTCACAGTA.................................................	24	1	21.00	21	3	18	0	0	0	0
..................................................GTGAGTATAGTGGATGTGGGTG...................................................................................................	22	1	20.00	20	3	0	0	0	8	9
..................................................................................................TCTCACATCTCCATATTCA......................................................	19	1	17.00	17	4	5	0	6	0	2
..................................................GTGAGTATAGTGGATGTGGG.....................................................................................................	20	1	17.00	17	2	2	0	0	10	3
..................................................................................................TCTCACATCTCCATATTCACAC...................................................	22	1	12.00	12	3	6	3	0	0	0
...................................................................................................CTCACATCTCCATATTCAC.....................................................	19	1	11.00	11	8	3	0	0	0	0
..................................................................................................TCTCACATCTCCATATTCACAGTAA................................................	25	1	10.00	10	1	9	0	0	0	0
..................................................GTGAGTATAGTGGATGTGGGTGT..................................................................................................	23	1	10.00	10	2	0	0	0	2	6
..................................................GTGAGTATAGTGGATGTGG......................................................................................................	19	1	10.00	10	0	1	0	0	1	8
....................................................................................................TCACATCTCCATATTCACAG...................................................	20	1	9.00	9	5	2	0	0	0	2
..................................................................................................TCTCACATCTCCATATTCACAT...................................................	22	1	8.00	8	2	0	6	0	0	0
...................................................TGAGTATAGTGGATGTGGGTGGT.................................................................................................	23	1	8.00	8	0	0	0	0	1	7
...................................................................................................CTCACATCTCCATATTCACAGTT.................................................	23	1	7.00	7	5	0	0	0	0	2
.................................................................................................CTCTCACATCTCCATATTCACAG...................................................	23	1	6.00	6	5	1	0	0	0	0
.....................................................................................................CACATCTCCATATTCACAG...................................................	19	1	6.00	6	4	2	0	0	0	0
...................................................TGAGTATAGTGGATGTGGGT....................................................................................................	20	1	5.00	5	0	1	1	1	1	1
....................................................................................................TCACATCTCCATATTCACAGT..................................................	21	1	5.00	5	4	0	0	1	0	0
...................................................TGAGTATAGTGGATGTGGGTG...................................................................................................	21	1	5.00	5	0	1	0	0	0	4
..................................................................................................TCTCACATCTCCATATTCACAGG..................................................	23	1	5.00	5	4	1	0	0	0	0
...................................................................................................CTCACATCTCCATATTCACAGA..................................................	22	1	4.00	4	4	0	0	0	0	0
......................................................GTATAGTGGATGTGGGTGG..................................................................................................	19	1	4.00	4	3	0	0	0	1	0
..................................................................................................TCTCACATCTCCATATTCACC....................................................	21	1	3.00	3	0	0	2	0	0	1
....................................................................................................TCACATCTCCATATTCACA....................................................	19	1	3.00	3	1	1	0	1	0	0
.................................................................................................CTCTCACATCTCCATATTCACA....................................................	22	1	3.00	3	0	3	0	0	0	0
....................................................GAGTATAGTGGATGTGGGTGG..................................................................................................	21	1	3.00	3	0	0	0	0	0	3
..................................................................................................TCTCACATCTCCATATTCACAGAA.................................................	24	1	3.00	3	1	2	0	0	0	0
...................................................TGAGTATAGTGGATGTGGG.....................................................................................................	19	1	2.00	2	0	0	0	0	0	2
..................................................GTGAGTATAGTGGATGTGGGTGGA.................................................................................................	24	1	2.00	2	0	0	0	0	1	1
..................................................................................................TCTCACATCTCCATATTCACG....................................................	21	1	2.00	2	0	2	0	0	0	0
......................................................................................................ACATCTCCATATTCACAGT..................................................	19	1	2.00	2	0	1	0	0	0	1
.....................................................................................................CACATCTCCATATTCACA....................................................	18	1	2.00	2	1	1	0	0	0	0
.................................................................................................CTCTCACATCTCCATATTCACAGT..................................................	24	1	2.00	2	1	1	0	0	0	0
.................................................................................................CTCTCACATCTCCATATTCACAGTT.................................................	25	1	2.00	2	1	1	0	0	0	0
..................................................................................................TCTCACATCTCCATATTCACAGTTA................................................	25	1	2.00	2	1	1	0	0	0	0
.....................................................................................................CACATCTCCATATTCACAGT..................................................	20	1	2.00	2	1	1	0	0	0	0
.................................................................................................CTCTCACATCTCCATATTCA......................................................	20	1	1.00	1	0	1	0	0	0	0
.........................................................................CTCTTA-----TTTGGCC--GGTCC.........................................................................	18	1	1.00	1	0	1	0	0	0	0
..................................................................................................TCTCACATCTCCATATTCAA.....................................................	20	1	1.00	1	0	0	0	1	0	0
....................................................................................................TCACATCTCCATATTCAC.....................................................	18	1	1.00	1	1	0	0	0	0	0
..................................................................................................TCTCACATCTCCATATTCACAGTG.................................................	24	1	1.00	1	0	1	0	0	0	0
...................................................TGAGTATAGTGGATGTGGT.....................................................................................................	19	1	1.00	1	0	0	0	0	1	0
.................................................................................................CTCTCACATCTCCATATTCACAGA..................................................	24	1	1.00	1	0	1	0	0	0	0
..................................................................................................TCTCACATCTCCATATTC.......................................................	18	1	1.00	1	1	0	0	0	0	0
..................................................GTGAGTATAGTGGATGTGGGTGGC.................................................................................................	24	1	1.00	1	0	0	0	0	0	1
..................................................................................................TCTCACATCTCCATATTCACATAA.................................................	24	1	1.00	1	0	0	1	0	0	0
.......................................................................................................CATCTCCATATTCACAGT..................................................	18	1	1.00	1	1	0	0	0	0	0
...........AGACGAGATGCGCGAACTGGC...........................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0
..................................................GTGAGTATAGTGGATGTGGGTGGG.................................................................................................	24	1	1.00	1	1	0	0	0	0	0
..................................................................................................TCTCACATCTCCATATTCACAAA..................................................	23	1	1.00	1	1	0	0	0	0	0
................................................................................................................................AGCTGCGCCACAAGTATGGTAC.....................	22	1	1.00	1	1	0	0	0	0	0
..................................................................................................TCTCACATCTCCATATTCACAAC..................................................	23	1	1.00	1	0	1	0	0	0	0
..................................................GTGAGTATAGTGGATGTGGGTT...................................................................................................	22	1	1.00	1	1	0	0	0	0	0
...................................................TGAGTATAGTGGATGTGGGTA...................................................................................................	21	1	1.00	1	1	0	0	0	0	0
..................................................................................................TCTCACATCTCCATATTCACATT..................................................	23	1	1.00	1	0	0	1	0	0	0
..................................................................................................TCTCACATCTCCATATTCG......................................................	19	1	1.00	1	1	0	0	0	0	0

droBip1

CAGGAGCGCGAAGACGAGATGCGTGAACTGGCGCTAAAGTTACGCCGAAGGTGAGTATAGTGGATGTGGGTGGCTCTAA---A-TATGGCC--AGTCCTCTCACATCTCCATATTCACAGGCGTCGCGAGCTGCGCCACAAGTATGGCACGCCCTCCAGCGGCAAACTGTC	Size	Hit Count	Total Norm	Total
No Reads

droKik1

CAGGAGCGAGAGGACGAGATGCGGGAGCTGGCGCTGAAACTGCGTCGAAGGTGAGTATTGTGGGTGTGGGTGGCTCTG------G-CGGCC--AGTCCTCTCACATCACCATATTCACAGGCGTCGCGAGCTACGCCACAAATACGGCACGCCCTCCAGCGGAAAGCTCTC	Size	Hit Count	Total Norm	Total
No Reads

droFic1

CAAGAGCGCGAGGACGAGATGCGTGAACTGGCGCTGAAGCTGCGCAGAAGGTGAGTATC-TGGATGTGACTGGCTCTT------G-----C--GGTCCTCTCACATCTAGTTATTCTCAGGCGCCGTGAGCTGCGACACAAATACGGAACGCCATCGAGCGGCAAGCTATC	Size	Hit Count	Total Norm	Total
No Reads

droEle1

CAGGAACGTGAGGACGAGATGCGCGAACTGGCGCTGAAGCTGCGCAGGAGGTGAGTATC-TTGATGTGGTTGGCTCTT------C-TGG-G--CGTCCTCTCACATCTACATATTCACAGGCGGCGTGAGCTGCGCCACAAGTATGGGACCCCTTCGAGCGGCAAGCTCTC	Size	Hit Count	Total Norm	Total
No Reads

droRho1

CAGGAGCGTGAAGACGAGATGCGTGAACTGGCGCTGAAGCTGCGCAGGAGGTGAGTATC-TTGATGTGGTCGGCTTTA------G-----C--GGTCCTCTCACATCTACATATTCACAGGCGCCGTGAGCTGCGTCACAAGTATGGTACACCCTCGAGTGGAAAGCTGTC	Size	Hit Count	Total Norm	Total
No Reads

droBia1

CAGGAACGCGAGGACGAGATGCGTGAGCTGGCGCTGAAGCTGCGCAGAAGGTGGGTATT-TTGATGTGGTTGGCTCTG------G-----C--GGTCCTCTCACATCTATATATTCACAGGCGTCGTGAGCTGCGGCACAAATATGGCACGCCCTCCAGCGGCAAGCTCTC	Size	Hit Count	Total Norm	Total
No Reads

droTak1

CAGGAGCGCGAGGACGAGATGCGTGAGCTGGCGCTGAAGCTGCGCAGGAGGTGGGTATC-TGGATGTGGTTGGCTCTG------G-----C--GGTCCTCTCACATCTACATATTCACAGGCGTCGTGAGCTGCGACACAAATACGGAACGCCCTCGAGCGGCAAGCTTTC	Size	Hit Count	Total Norm	Total
No Reads

droEug1

CAGGAGCGTGAGGACGAGATGCGTGAGTTGGCTTTGAAGCTGCGCAGGAGGTGGGTATC-TTGATGTGGTTGGCTCCG------G-----C--TGTCCTCTCACATCTGTATATTCACAGGCGTCGTGAGCTGCGTCACAAGTATGGAACGCCCTCAAGCGGCAAGCTGTC	Size	Hit Count	Total Norm	Total
No Reads

dm3

CAGGAACGCGAGGATGAGATGCGCGAACTGGCCCTCAAGCTGCGCAGAAGGTGGGTATC-TGGATGTGGTTGGCTCTG------G-----C--GGTCCTCTCACATTTACATATTCACAGGCGCCGTGAGCTGCGTCACAAATATGGAACGCCCTCGAGTGGAAAGCTCTC	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
..................................................................................................TCTCACATTTACATATTCACAG...................................................	22	1	70566.00	70566	0	0	0	0	37	11	24	25	5	17	12	42	13	47	1	0	1	4	1	0	12	33	1	43	0	3	38	6	9	28	242	354	4	1	11	2	22	11	13	18	1	34	53	13	6	35	4	22	33	69	77	34	7	0	0	0	206	122	54	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	476	461	351	401	37	196	97	120	186	496	890	431	77	43	303	232	30	350	360	334	322	14	3	302	373	387	40	757	870	1293	626	189	169	45	259	124	52	112	577	0	118	7	1	11	0	7	6	31	0	204	20	391	170	1	0	0	0	1	0	4	3	22	0	12	24	34	17	9	8	86	34	25	15	114	10	23	22	34	8	10	5	0	5	151	18	116	2	79	59	113	357	0	370	14	8	269	404	32	262	12	497	38	487	36	16	66	111	2	0	901	38	34	37	12	0	0	0	25	2	4	22	0	0	0	0	0	9	14	0	0	0	0	0	0	24	30	32	58	106	4	11	6149	1448	4821	7537	8349	1078	3980	5181	1533	53	49	1487	0	0	0	0	38	18	2	24	16	41	200	84	197	19	13	89	25	30	22	13	51	66	6	80	15	58	54	16	59	71	6	443	27	240	1013	600	89	41	143	336	24	52	198	587	167	530	33	44	228	21	216	25	76	58	71	83	26	9	13	75	2	31	62	14	14	7	5	0	1	72	76	4	15	27	152	16	30	20	3	16	21	32	23	22	2	5	9	4	2	5	4	3	20	46	414	209	112	0
..................................................................................................TCTCACATTTACATATTCACA....................................................	21	1	31735.00	31735	0	0	0	0	33	4	1	4	3	2	4	5	6	22	0	0	0	1	0	0	0	16	0	12	0	0	66	0	5	12	310	413	3	4	1	1	2	6	3	2	3	10	23	5	4	8	3	10	7	11	13	7	3	0	0	0	12	6	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	314	327	259	223	46	85	21	77	63	116	465	343	26	33	169	147	23	71	179	135	174	5	3	199	227	510	27	677	650	1554	474	92	183	22	37	44	22	103	212	10	175	177	7	88	1	83	72	209	6	264	21	424	258	0	0	0	0	0	0	0	0	7	0	10	15	16	11	8	4	26	10	9	9	44	4	4	4	6	12	2	3	0	0	143	45	140	4	102	97	109	563	0	464	6	0	348	450	12	327	7	641	6	894	5	0	40	129	2	0	1194	15	8	28	12	0	0	0	5	0	6	32	0	0	0	0	0	0	6	1	0	0	0	0	0	61	92	109	44	72	5	5	581	621	543	671	670	216	427	1182	1303	4	5	1277	0	0	0	0	23	18	1	11	26	82	200	334	177	30	55	77	50	96	47	45	210	178	25	176	32	94	75	24	104	81	15	414	28	318	428	266	173	20	27	60	3	10	36	66	6	50	34	74	287	12	315	56	66	54	109	12	7	7	10	63	6	13	13	7	9	8	15	3	13	8	41	5	11	20	151	22	33	31	1	14	14	36	10	25	1	5	32	3	1	5	6	5	11	77	304	112	234	0
..................................................GTGGGTATC-TGGATGTGGTTGG..................................................................................................	22	1	29033.00	29033	0	0	0	0	1	0	0	3	2	0	1	0	0	2	0	1	0	0	0	0	0	2	1	2	0	1	2	0	1	0	0	0	0	0	26	4	11	5	3	3	1	6	12	0	0	1	15	1	8	3	40	5	0	0	39	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	2	0	0	0	29	1	60	27	12	11	36	4	2	22	1	1	8	12	4	3	4	0	5	22	18	0	40	76	85	68	11	13	1	2	9	4	9	2	0	2	1	0	0	0	1	0	0	0	1	1	0	3	0	0	0	0	1	0	0	0	0	0	0	6	7	63	3	7	25	26	39	15	23	18	51	27	15	8	14	27	0	18	10	0	37	13	10	13	5	5	0	2	1	0	0	6	0	4	2	3	3	13	57	0	6	0	0	2	0	12	4	10	11	0	1	0	3	0	10	7	3	4	4	0	1	25	9	3	0	3	1	0	0	154	157	66	244	179	17	89	20	10	25	35	14	22	29	16	40	3	0	60	0	0	0	0	13	10	0	1	3	100	190	222	85	35	13	43	5	149	66	69	82	154	7	42	47	33	174	152	88	40	37	138	76	87	192	87	7	45	2	25	2	19	3	35	2	22	128	89	166	26	198	32	28	23	60	646	33	32	19	988	14	37	217	133	693	40	85	42	47	22	45	41	831	557	861	1659	989	1842	264	1534	2283	2813	1067	1962	227	129	327	119	69	60	36	96	283	398	665	581	201	0
..................................................................................................TCTCACATTTACATATTCACAGT..................................................	23	1	18392.00	18392	0	0	0	0	0	1	2	2	3	1	0	5	0	5	0	0	0	0	0	0	5	11	2	0	0	1	81	0	0	0	0	0	0	0	2	14	12	10	2	13	3	27	54	12	4	31	11	24	30	50	66	30	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	97	70	61	66	0	17	1	34	14	37	124	74	2	2	22	9	4	8	7	20	20	0	0	32	41	25	0	75	164	281	131	21	26	3	16	7	7	24	40	1	8	4	0	1	0	6	2	7	1	6	0	20	15	0	0	0	0	0	0	0	0	0	0	7	50	104	100	40	23	114	64	63	48	73	39	76	74	29	0	0	0	0	0	97	8	119	8	32	33	4	17	0	21	0	0	3	18	1	11	0	37	4	32	19	0	18	31	6	0	43	12	36	30	24	0	0	0	20	0	14	15	0	0	0	0	0	19	18	0	0	0	0	0	0	112	68	49	67	51	6	4	480	166	356	512	410	77	192	430	164	2	6	162	0	0	0	0	16	7	1	7	7	40	62	79	104	7	8	37	3	51	16	24	43	34	2	153	28	77	42	29	80	96	11	320	24	205	276	252	168	37	240	587	41	92	395	1123	490	1441	169	69	440	30	354	60	61	59	84	48	12	12	13	93	2	133	240	32	65	7	36	8	9	13	134	26	55	91	223	70	130	110	10	66	104	50	66	67	6	5	18	13	6	29	27	8	58	130	422	302	220	0
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.....................................................................................................CACATTTACATATTCACAG...................................................	19	1	19.00	19	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	2	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................TCTCACATTTACATATTCACACA..................................................	23	1	18.00	18	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	2	1	1	0	2	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................CTCTCACATTTACATATTCACA....................................................	22	1	18.00	18	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	1	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................GTGGGTATC-TGGATGTGGTTGGCTC...............................................................................................	25	1	17.00	17	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	1	0	0	1	0	0	0	1	0	0	0	0	0	0	0
....................................................GGGTATC-TGGATGTGGTTG...................................................................................................	19	1	16.00	16	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	5	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
..................................................GTGGGTATC-TGGATGTGGTTTT..................................................................................................	22	1	16.00	16	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	1	0	0	0	0	1	0	0	0	1	6	0	1	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

CAGGAGCGCGAGGATGAGATGCGCGAACTGGCACTGAAGCTGCGCAGAAGGTGGGTATC-TGGATGTGGTTGGCTCTG------G-----C--GGTCCTCTCACATTTACATATTCACAGGCGCCGTGAGCTGCGTCACAAATATGGAACGCCCTCAAGTGGAAAGCTCTC	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
..................................................................................................TCTCACATTTACATATTCACAG...................................................	22	1	7869.00	7869	1186	89	1090	63	1479	2439	268	418	251	376	64	42	30	74	0	0	0
..................................................................................................TCTCACATTTACATATTCACA....................................................	21	1	2016.00	2016	108	3	35	23	228	595	200	342	208	188	31	37	2	16	0	0	0
..................................................................................................TCTCACATTTACATATTCACAGA..................................................	23	1	1528.00	1528	16	4	8	3	0	0	470	563	296	165	1	0	0	2	0	0	0
..................................................................................................TCTCACATTTACATATTCAC.....................................................	20	1	637.00	637	30	1	3	2	134	413	17	12	10	13	1	0	0	1	0	0	0
..................................................................................................TCTCACATTTACATATTCACAGT..................................................	23	1	519.00	519	17	5	12	2	0	0	98	128	101	76	68	5	1	6	0	0	0
..................................................................................................TCTCACATTTACATATTC.......................................................	18	1	244.00	244	1	0	0	0	57	186	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................TCTCACATTTACATATTCA......................................................	19	1	233.00	233	9	0	0	1	51	163	0	5	1	3	0	0	0	0	0	0	0
..................................................GTGGGTATC-TGGATGTGGTTGG..................................................................................................	22	1	221.00	221	3	3	10	0	1	0	5	8	2	0	71	28	11	79	0	0	0
..................................................................................................TCTCACATTTACATATTCACAA...................................................	22	1	114.00	114	1	1	1	0	0	0	6	19	42	39	0	0	0	5	0	0	0
..................................................................................................TCTCACATTTACATATTCACAGAA.................................................	24	1	87.00	87	1	1	0	0	0	0	10	19	42	14	0	0	0	0	0	0	0
..................................................GTGGGTATC-TGGATGTGGTTG...................................................................................................	21	1	70.00	70	0	0	0	2	1	0	5	5	0	1	33	7	4	12	0	0	0
...................................................................................................CTCACATTTACATATTCACAG...................................................	21	1	70.00	70	5	2	0	5	21	35	0	1	0	0	0	1	0	0	0	0	0
..................................................................................................TCTCACATTTACATATTCACAC...................................................	22	1	66.00	66	20	4	24	1	0	0	3	4	0	6	2	0	1	1	0	0	0
..................................................................................................TCTCACATTTACATATTCACAGTA.................................................	24	1	64.00	64	1	0	4	0	0	0	14	18	17	10	0	0	0	0	0	0	0
..................................................................................................TCTCACATTTACATATTCACAGGCGCC..............................................	27	1	25.00	25	0	0	0	0	10	15	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................TCTCACATTTACATATTCACAGG..................................................	23	1	22.00	22	3	2	4	0	1	8	1	3	0	0	0	0	0	0	0	0	0
..................................................................................................TCTCACATTTACATATTCACAGGCG................................................	25	1	21.00	21	0	0	0	0	1	20	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................CTCACATTTACATATTCACAGA..................................................	22	1	18.00	18	1	1	0	0	0	0	5	8	0	2	0	1	0	0	0	0	0
..................................................................................................TCTCACATTTACATATTCACAGAAA................................................	25	1	15.00	15	0	0	0	0	0	0	1	5	5	2	0	0	0	2	0	0	0
...................................................................................................CTCACATTTACATATTCACAGT..................................................	22	1	15.00	15	1	0	1	0	0	0	3	1	0	2	4	3	0	0	0	0	0
..................................................GTGGGTATC-TGGATGTGGTTGGT.................................................................................................	23	1	10.00	10	0	0	0	0	0	0	0	1	0	0	6	0	0	3	0	0	0
..................................................................................................TCTCACATTTACATATTCACAGC..................................................	23	1	10.00	10	3	0	1	0	0	0	1	4	1	0	0	0	0	0	0	0	0
..................................................................................................TCTCACATTTACATATTCACAAA..................................................	23	2	8.50	17	0	0	0	0	0	0	1	5	5	5	0	0	0	1	0	0	0
..................................................GTGGGTATC-TGGATGTGGTT....................................................................................................	20	1	7.00	7	0	0	0	1	0	0	2	0	1	0	3	0	0	0	0	0	0
..................................................GTGGGTATC-TGGATGTGGTTGGCTC...............................................................................................	25	1	7.00	7	0	0	0	0	0	0	0	0	0	0	0	0	7	0	0	0	0
..................................................GTGGGTATC-TGGATGTGGT.....................................................................................................	19	1	7.00	7	0	0	0	0	0	2	0	0	0	0	5	0	0	0	0	0	0
...................................................................................................CTCACATTTACATATTCACA....................................................	20	1	7.00	7	0	0	0	1	2	4	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................TCTCACATTTACATATTCACAAAA.................................................	24	2	6.00	12	0	0	0	0	0	0	1	2	7	2	0	0	0	0	0	0	0
..................................................GTGGGTATC-TGGATGTGGTTGGC.................................................................................................	23	1	6.00	6	1	0	0	0	0	1	0	0	0	0	2	0	1	1	0	0	0
...................................................................................................CTCACATTTACATATTCAC.....................................................	19	1	5.00	5	0	0	0	0	2	3	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................TCTCACATTTACATATTCACG....................................................	21	1	4.00	4	1	0	1	0	0	0	0	2	0	0	0	0	0	0	0	0	0
..................................................................................................TCTCACATTTACATATTCACAGTAA................................................	25	1	4.00	4	0	0	3	0	0	0	1	0	0	0	0	0	0	0	0	0	0
..................................................................................................TCTCACATTTACATATTCACAT...................................................	22	1	3.00	3	0	0	0	1	0	0	0	1	0	0	0	1	0	0	0	0	0
.................................................................................................CTCTCACATTTACATATTCACAG...................................................	23	1	3.00	3	0	0	0	0	1	0	0	0	0	0	1	0	1	0	0	0	0
..................................................GTGGGTATC-TGGATGTGGTTGGCT................................................................................................	24	1	3.00	3	0	0	0	0	0	0	0	0	0	0	1	0	0	2	0	0	0
..................................................................................................TCTCACATTTACATATTCACACT..................................................	23	1	3.00	3	0	0	0	0	0	0	2	1	0	0	0	0	0	0	0	0	0
..................................................................................................TCTCACATTTACATATTCAA.....................................................	20	1	3.00	3	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0
..................................................................................................TCTCACATTTACATATTCACAGTT.................................................	24	1	3.00	3	0	0	0	0	0	0	1	1	0	0	0	0	0	1	0	0	0
........................................................................GCTCTG------G-----C--GGTCCTCTCAC...................................................................	19	1	2.00	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................TCTCACATTTACATATTCACAGGC.................................................	24	1	2.00	2	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................TCTCACATTTACATA..........................................................	15	1	2.00	2	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................TCTCACATTTACATATTCACAGGCGC...............................................	26	1	2.00	2	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................TCACATTTACATATTCACAGA..................................................	21	1	2.00	2	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0
..................................................GTGGGTATC-TGGATGTGGTTGA..................................................................................................	22	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0
......................................................................................................ACATTTACATATTCACAG...................................................	18	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0
..................................................................................................TCTCACATTTACATATTCACATA..................................................	23	1	2.00	2	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0
........................................................................GCTCTG------G-----C--GGTCCTCTCACATTT...............................................................	23	1	2.00	2	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
..................................................GTGGGTATC-TGGATGTGGTTGGTA................................................................................................	24	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0
...................................................................................................CTCACATTTACATATTCACAGAA.................................................	23	1	2.00	2	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0
..................................................GTGGGTATC-TGGATGTGG......................................................................................................	18	1	2.00	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
...................................................TGGGTATC-TGGATGTGGTTGG..................................................................................................	21	1	2.00	2	0	0	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0
........................................................................GCTCTG------G-----C--GGTCCTCTCACATTTACAT...........................................................	27	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0
.....................................................................................................CACATTTACATATTCACAG...................................................	19	1	2.00	2	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0
....................................................................................................TCACATTTACATATTCACAG...................................................	20	1	2.00	2	0	0	0	0	1	0	0	0	0	0	0	1	0	0	0	0	0
...................................................................................................CTCACATTTACATATTCACAGTT.................................................	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
.................................................................................................CTCTCACATTTACATATTCAC.....................................................	21	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................TTTACATATTCACAG...................................................	15	2	1.00	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
....................................................................................................TCACATTTACATATTCACA....................................................	19	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
.............................GGCACTGAAGCTGCGC..............................................................................................................................	16	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..................................................................................................TCTCACATTTACATATTCACAAT..................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
......................................................................................................ACATTTACATATTCACAGT..................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...............................................................................................TCCTCTCACATTTACATATTCAC.....................................................	23	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................CTCTCACATTTACATATTCACA....................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
........................................................................GCTCTG------G-----C--GGTCCTCTCACATTTACATA..........................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
..................................................................................................TCTCACATTTACATATTCAG.....................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................CTCACATTTACATATTCA......................................................	18	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
..................................................GTGGGTATC-TGGATGTGGTTGGCA................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
..............TGAGATGCGCGAACTGGCACTGAAGC...................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..................................................GTGGGTATC-TGGATGTGGTTGGCTCTG------.......................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................CATTTACATATTCACAG...................................................	17	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.....................................................................................................CACATTTACATATTCACAGT..................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...................................................TGGGTATC-TGGATGTGGTTGGC.................................................................................................	22	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................TCTCACATTTACATATTCACAGGA.................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
........................................................................GCTCTG------G-----C--GGTCCTCTCACATTTACA............................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
..................................................GTGGGTATC-TGGATGTGGTTGGG.................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
........................................................................................................ATTTACATATTCACAG...................................................	16	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
......................................................GTATC-TGGATGTGGTTG...................................................................................................	17	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..................................................................................................TCTCACATTTACATATTCACGA...................................................	22	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
..................................................GTGGGTATC-TGGATGTGGTTC...................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.....................................................GGTATC-TGGATGTGGTTGG..................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..................................................................................................TCTCACATTTACATAT.........................................................	16	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
..................................................GTGGGTATC-TGGATGTGGTTGGGG................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...................................................................................................CTCACATTTACATATTCACAGTA.................................................	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
..................................................GTGGGTATC-TGGATGTG.......................................................................................................	17	2	0.50	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..................................................................................................TCTCACATTTACATATTCACACAA.................................................	24	4	0.25	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
..........................................................C-TGGATGTGGTTGGA.................................................................................................	15	19	0.05	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0

droSec2

CAGGAGCGCGAGGATGAGATGCGAGAACTGGCACTGAAGCTGCGCAGAAGGTGGGTATC-TGGATGTGGTTGGCTCTG------G-----C--GGTCCTCTCACATTTACATATTCACAGGCGCCGTGAGCTGCGTCACAAATATGGAACGCCCTCGAGTGGAAAGCTCTC	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
..................................................................................................TCTCACATTTACATATTCACAG...................................................	22	1	1542.00	1542	1440	5	51	46
..................................................................................................TCTCACATTTACATATTCACA....................................................	21	1	544.00	544	435	12	24	73
..................................................GTGGGTATC-TGGATGTGGTTGG..................................................................................................	22	1	234.00	234	15	45	133	41
..................................................................................................TCTCACATTTACATATTCACAGT..................................................	23	1	169.00	169	97	13	39	20
...................................................................................................CTCACATTTACATATTCACAG...................................................	21	1	110.00	110	109	0	1	0
..................................................................................................TCTCACATTTACATATTCAC.....................................................	20	1	74.00	74	67	0	0	7
..................................................GTGGGTATC-TGGATGTGGTTG...................................................................................................	21	1	62.00	62	6	20	23	13
..................................................................................................TCTCACATTTACATATTCACAGA..................................................	23	1	41.00	41	36	0	0	5
...................................................................................................CTCACATTTACATATTCACA....................................................	20	1	35.00	35	34	0	0	1
...................................................................................................CTCACATTTACATATTCACAGT..................................................	22	1	30.00	30	19	3	5	3
..................................................................................................TCTCACATTTACATATTCACAC...................................................	22	1	21.00	21	21	0	0	0
..................................................................................................TCTCACATTTACATATTCA......................................................	19	1	16.00	16	2	0	0	14
..................................................................................................TCTCACATTTACATATTCACAGC..................................................	23	1	9.00	9	9	0	0	0
....................................................................................................TCACATTTACATATTCACAG...................................................	20	1	7.00	7	7	0	0	0
..................................................GTGGGTATC-TGGATGTGGTTGGA.................................................................................................	23	1	6.00	6	1	4	0	1
..................................................GTGGGTATC-TGGATGTGGTTGGT.................................................................................................	23	1	6.00	6	0	2	4	0
..................................................GTGGGTATC-TGGATGTGGTTGGC.................................................................................................	23	1	5.00	5	0	2	1	2
..................................................................................................TCTCACATTTACATATTCACG....................................................	21	1	4.00	4	3	0	1	0
...................................................................................................CTCACATTTACATATTCACAGA..................................................	22	1	4.00	4	3	1	0	0
..................................................................................................TCTCACATTTACATATTCACAT...................................................	22	1	4.00	4	4	0	0	0
......................................................................................................ACATTTACATATTCACAG...................................................	18	1	4.00	4	4	0	0	0
..................................................GTGGGTATC-TGGATGTGGTTGT..................................................................................................	22	1	3.00	3	0	2	1	0
..................................................GTGGGTATC-TGGATGTGGTT....................................................................................................	20	1	3.00	3	0	1	1	1
..................................................................................................TCTCACATTTACATATTCACAA...................................................	22	1	3.00	3	3	0	0	0
..................................................GTGGGTATC-TGGATGTGG......................................................................................................	18	1	3.00	3	0	0	1	2
...................................................................................................CTCACATTTACATATTCACAGTT.................................................	23	1	3.00	3	2	0	0	1
..................................................................................................TCTCACATTTACATATTCACAGCA.................................................	24	1	3.00	3	1	0	0	2
.................................................................................................CTCTCACATTTACATATTCACAG...................................................	23	1	3.00	3	3	0	0	0
...................................................................................................CTCACATTTACATATTCAC.....................................................	19	1	3.00	3	3	0	0	0
...................................................TGGGTATC-TGGATGTGGTTGGT.................................................................................................	22	1	2.00	2	2	0	0	0
..................................................GTGGGTATC-TGGATGTGGTTGA..................................................................................................	22	1	2.00	2	0	1	0	1
....................................................................................................TCACATTTACATATTCACAGT..................................................	21	1	2.00	2	1	0	1	0
..................................................................................................TCTCACATTTACATATTCACAGTT.................................................	24	1	2.00	2	1	0	0	1
.....................................................................................................CACATTTACATATTCACA....................................................	18	1	2.00	2	2	0	0	0
....................................................GGGTATC-TGGATGTGGTTGG..................................................................................................	20	1	2.00	2	1	0	0	1
..................................................................................................TCTCACATTTACATATTCACAGG..................................................	23	1	1.00	1	1	0	0	0
..................................................................................................TCTCACATTTACATATTCACATT..................................................	23	1	1.00	1	0	0	0	1
...................................................TGGGTATC-TGGATGTGGTTGG..................................................................................................	21	1	1.00	1	0	0	0	1
....................................................................................................TCACATTTACATATTCACA....................................................	19	1	1.00	1	0	0	0	1
..................................................................................................TCTCACATTTACATATTCACACC..................................................	23	1	1.00	1	1	0	0	0
...................................................TGGGTATC-TGGATGTGGT.....................................................................................................	18	1	1.00	1	1	0	0	0
..................................................GTGGGTATC-TGGATGTGGTTGCA.................................................................................................	23	1	1.00	1	0	1	0	0
...................................................................................................CTCACATTTACATATTCACAC...................................................	21	1	1.00	1	1	0	0	0
..................................................GTGGGTATC-TGGATGTGGTTGGTA................................................................................................	24	1	1.00	1	0	0	0	1
..................................................................................................TCTCACATTTACATATTCACACA..................................................	23	1	1.00	1	1	0	0	0
..................................................GTGGGTATC-TGGATGTGGTTT...................................................................................................	21	1	1.00	1	1	0	0	0
...................................................................................................CTCACATTTACATATTCACAGTAA................................................	24	1	1.00	1	1	0	0	0
..................................................GTGGGTATC-TGGATGTGGTTGGCT................................................................................................	24	1	1.00	1	0	1	0	0
..................................................................................................TCTCACATTTACATATTCACACT..................................................	23	1	1.00	1	1	0	0	0
....................................................................................................TCACATTTACATATTCAC.....................................................	18	1	1.00	1	1	0	0	0
...................................................................................................CTCACATTTACATATTCACAGC..................................................	22	1	1.00	1	1	0	0	0
..................................................................................................TCTCACATTTACATATTCACAGAA.................................................	24	1	1.00	1	1	0	0	0
..................................................GTGGGTATC-TGGATGTGGT.....................................................................................................	19	1	1.00	1	0	0	0	1
..................................................................................................TCTCACATTTACATATTCAGT....................................................	21	2	0.50	1	0	0	1	0

droYak3

CAGGAGCGCGAGGACGAGATGCGTGAACTGGCTCTGAAGCTGCGCAGAAGGTGGGTATC-TGGATGTGGTTGGCTCTG------G-----C--GGTCCTCTCACATTTACATATTCACAGGCGTCGTGAGCTGCGACACAAATATGGAACGCCCTCGAGTGGAAAGCTCTC	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
..................................................................................................TCTCACATTTACATATTCACAG...................................................	22	1	1814.00	1814	460	1274	33	27	6	11	2	1	0	0	0
..................................................................................................TCTCACATTTACATATTCACA....................................................	21	1	864.00	864	49	724	16	34	18	19	4	0	0	0	0
..................................................................................................TCTCACATTTACATATTCACAGT..................................................	23	1	173.00	173	6	115	16	11	4	12	9	0	0	0	0
...................................................................................................CTCACATTTACATATTCACAG...................................................	21	1	129.00	129	1	127	1	0	0	0	0	0	0	0	0
..................................................................................................TCTCACATTTACATATTCAC.....................................................	20	1	102.00	102	12	87	2	0	0	1	0	0	0	0	0
...................................................................................................CTCACATTTACATATTCACA....................................................	20	1	79.00	79	0	79	0	0	0	0	0	0	0	0	0
..................................................GTGGGTATC-TGGATGTGGTTGG..................................................................................................	22	1	74.00	74	0	8	39	17	1	5	4	0	0	0	0
..................................................GTGGGTATC-TGGATGTGGTTG...................................................................................................	21	1	36.00	36	1	2	13	14	0	4	2	0	0	0	0
...................................................................................................CTCACATTTACATATTCACAGT..................................................	22	1	33.00	33	1	19	4	4	2	2	1	0	0	0	0
..................................................................................................TCTCACATTTACATATTCACAC...................................................	22	1	14.00	14	6	7	1	0	0	0	0	0	0	0	0
..................................................................................................TCTCACATTTACATATTCACAGA..................................................	23	1	13.00	13	1	11	0	0	0	1	0	0	0	0	0
....................................................................................................TCACATTTACATATTCACA....................................................	19	1	11.00	11	0	10	0	0	0	1	0	0	0	0	0
....................................................................................................TCACATTTACATATTCACAG...................................................	20	1	8.00	8	0	8	0	0	0	0	0	0	0	0	0
..................................................................................................TCTCACATTTACATATTCACAA...................................................	22	1	8.00	8	0	8	0	0	0	0	0	0	0	0	0
..................................................................................................TCTCACATTTACATATTCACAT...................................................	22	1	7.00	7	0	7	0	0	0	0	0	0	0	0	0
..................................................................................................TCTCACATTTACATATTCACAGC..................................................	23	1	6.00	6	1	1	4	0	0	0	0	0	0	0	0
..................................................................................................TCTCACATTTACATATTCA......................................................	19	1	5.00	5	1	2	0	1	0	1	0	0	0	0	0
....................................................................................................TCACATTTACATATTCACAGT..................................................	21	1	5.00	5	0	3	0	1	0	1	0	0	0	0	0
.................................................................................................CTCTCACATTTACATATTCACAG...................................................	23	1	5.00	5	0	4	0	1	0	0	0	0	0	0	0
...................................................................................................CTCACATTTACATATTCAC.....................................................	19	1	4.00	4	0	4	0	0	0	0	0	0	0	0	0
......................................................................................................ACATTTACATATTCACAG...................................................	18	1	4.00	4	0	4	0	0	0	0	0	0	0	0	0
.....................................................................................................CACATTTACATATTCACAGT..................................................	20	1	3.00	3	0	2	1	0	0	0	0	0	0	0	0
..................................................................................................TCTCACATTTACATATTCACAGTA.................................................	24	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0
.................................................................................................CTCTCACATTTACATATTCACA....................................................	22	1	2.00	2	0	2	0	0	0	0	0	0	0	0	0
.....................................................................................................CACATTTACATATTCACAG...................................................	19	1	2.00	2	0	2	0	0	0	0	0	0	0	0	0
..................................................GTGGGTATC-TGGATGTGG......................................................................................................	18	1	2.00	2	0	1	1	0	0	0	0	0	0	0	0
..................................................................................................TCTCACATTTACATATTCACAGTT.................................................	24	1	2.00	2	0	1	1	0	0	0	0	0	0	0	0
..................................................................................................TCTCACATTTACATATTCACC....................................................	21	1	2.00	2	0	0	0	1	0	1	0	0	0	0	0
...................................................................................................CTCACATTTACATATTCACAGTT.................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..................................................GTGGGTATC-TGGATGTGGTTGGC.................................................................................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
..................................................GTGGGTATC-TGGATGTGGTA....................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
...................................................................................................CTCACATTTACATATTCACAGTAA................................................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
........................................................................GCTCTG------G-----C--GGTCCTCTCACATTT...............................................................	23	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0
..................................................................................................TCTCACATTTACATATTCACAGG..................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..................................................GTGGGTATC-TGGATGTGGC.....................................................................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................AACGCCCTCGAGTGGAAAGCTCTC	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..................................................GTGGGTATC-TGGATGTGGTTGGCTC...............................................................................................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.....................................................................................................CACATTTACATATTCACA....................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...................................................................................................CTCACATTTACATATTCA......................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..................................................................................................TCTCACATTTACATATTCACAGAG.................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..................................................GTGGGTATC-TGGATGTGGTTGA..................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
....................................................................................................TCACATTTACATATTCACAGA..................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.................................................................................................CTCTCACATTTACATATTCACC....................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
......................................................................................................ACATTTACATATTCACAGT..................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..................................................GTGGGTATC-TGGATGTGGAA....................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
..................................................GTGGGTATC-TGGATGTGGTT....................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
...................................................................................................CTCACATTTACATATTCACAGGT.................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...................................................TGGGTATC-TGGATGTGGTTGG..................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..................................................GTGGGTATC-TGGATGTGGT.....................................................................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
..................................................GTGGGTATC-TGGATGTGGTTGGT.................................................................................................	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...................................................................................................CTCACATTTACATATTCACAGA..................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.....................................................................................................CACATTTACATATTCACAA...................................................	19	2	0.50	1	0	1	0	0	0	0	0	0	0	0	0
.....................................................................................................CACATTTACATATTCACACT..................................................	20	4	0.25	1	0	0	1	0	0	0	0	0	0	0	0

droEre2

CAGGAGCGCGAGGACGAGATGCGTGAACTGGCCCTGAAACTGCGCAGAAGGTGGGTATC-TGGATGTGGTTGGCTCTG------G-----C--GGTCCTCTCACATTTACATATTCACAGGCGCCGTGAGCTGCGTCACAAGTACGGAACGCCCTCGAGTGGAAAGCTCTC	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
..................................................................................................TCTCACATTTACATATTCACAG...................................................	22	1	2190.00	2190	1858	62	25	23	24	198	0
..................................................................................................TCTCACATTTACATATTCACA....................................................	21	1	1194.00	1194	833	51	20	25	13	252	0
..................................................................................................TCTCACATTTACATATTCACAGT..................................................	23	1	187.00	187	72	11	9	2	35	58	0
..................................................GTGGGTATC-TGGATGTGGTTGG..................................................................................................	22	1	179.00	179	5	3	6	20	33	112	0
...................................................................................................CTCACATTTACATATTCACAG...................................................	21	1	137.00	137	134	0	1	0	0	2	0
..................................................................................................TCTCACATTTACATATTCAC.....................................................	20	1	132.00	132	102	14	1	0	1	14	0
...................................................................................................CTCACATTTACATATTCACA....................................................	20	1	63.00	63	63	0	0	0	0	0	0
...................................................................................................CTCACATTTACATATTCACAGT..................................................	22	1	42.00	42	12	4	1	0	13	12	0
..................................................GTGGGTATC-TGGATGTGGTTG...................................................................................................	21	1	33.00	33	2	1	2	3	4	21	0
..................................................................................................TCTCACATTTACATATTCACAGA..................................................	23	1	24.00	24	18	0	0	1	0	5	0
..................................................................................................TCTCACATTTACATATTCA......................................................	19	1	22.00	22	5	0	0	0	0	17	0
..................................................................................................TCTCACATTTACATATTCACAA...................................................	22	1	13.00	13	12	0	0	0	0	1	0
..................................................................................................TCTCACATTTACATATTCACAC...................................................	22	1	11.00	11	8	3	0	0	0	0	0
..................................................................................................TCTCACATTTACATATTCACAT...................................................	22	1	8.00	8	6	0	0	0	0	2	0
....................................................................................................TCACATTTACATATTCACAG...................................................	20	1	7.00	7	5	0	0	0	0	2	0
..................................................................................................TCTCACATTTACATATTCACAGC..................................................	23	1	7.00	7	1	3	0	0	1	2	0
.................................................................................................CTCTCACATTTACATATTCACAG...................................................	23	1	5.00	5	4	1	0	0	0	0	0
...................................................................................................CTCACATTTACATATTCAC.....................................................	19	1	5.00	5	5	0	0	0	0	0	0
...................................................................................................CTCACATTTACATATTCACAT...................................................	21	1	5.00	5	5	0	0	0	0	0	0
...................................................................................................CTCACATTTACATATTCACAGC..................................................	22	1	4.00	4	2	2	0	0	0	0	0
..................................................GTGGGTATC-TGGATGTGGTTT...................................................................................................	21	1	4.00	4	0	0	1	2	1	0	0
..................................................GTGGGTATC-TGGATGTGGTTGGC.................................................................................................	23	1	4.00	4	0	0	0	0	2	2	0
..................................................GTGGGTATC-TGGATGTGGTTGGT.................................................................................................	23	1	4.00	4	0	0	0	0	2	2	0
..................................................................................................TCTCACATTTACATATTCACG....................................................	21	1	3.00	3	3	0	0	0	0	0	0
...................................................................................................CTCACATTTACATATTCACAGA..................................................	22	1	3.00	3	2	1	0	0	0	0	0
..................................................GTGGGTATC-TGGATGTGGTT....................................................................................................	20	1	3.00	3	1	0	0	0	1	1	0
..................................................................................................TCTCACATTTACATATTCACAGTA.................................................	24	1	2.00	2	2	0	0	0	0	0	0
..................................................GTGGGTATC-TGGATGTGGT.....................................................................................................	19	1	2.00	2	0	0	0	0	1	1	0
..................................................................................................TCTCACATTTACATATTCACAAA..................................................	23	1	2.00	2	2	0	0	0	0	0	0
..................................................................................................TCTCACATTTACATATTCACACC..................................................	23	1	2.00	2	2	0	0	0	0	0	0
.....................................................................................................CACATTTACATATTCACA....................................................	18	1	2.00	2	1	1	0	0	0	0	0
..................................................................................................TCTCACATTTACATATTCACAGTT.................................................	24	1	2.00	2	1	0	0	0	0	1	0
...................................................TGGGTATC-TGGATGTGGTTGG..................................................................................................	21	1	2.00	2	0	0	0	0	0	2	0
....................................................................................................TCACATTTACATATTCACA....................................................	19	1	2.00	2	1	0	0	0	0	1	0
...................................................................................................CTCACATTTACATATTCACAGTTT................................................	24	1	1.00	1	0	0	0	0	0	1	0
.................................................................................................CTCTCACATTTACATATTCACA....................................................	22	1	1.00	1	1	0	0	0	0	0	0
....................................................................................................TCACATTTACATATTCACAGT..................................................	21	1	1.00	1	1	0	0	0	0	0	0
...................................................................................................CTCACATTTACATATTCACAA...................................................	21	1	1.00	1	1	0	0	0	0	0	0
......................................................................................................ACATTTACATATTCACAG...................................................	18	1	1.00	1	1	0	0	0	0	0	0
...................................................................................................CTCACATTTACATATTCACAC...................................................	21	1	1.00	1	1	0	0	0	0	0	0
..................................................................................................TCTCACATTTACATATTCAA.....................................................	20	1	1.00	1	0	0	0	0	0	1	0
.....................................................................................................CACATTTACATATTCACAG...................................................	19	1	1.00	1	0	0	0	1	0	0	0
..................................................GTGGGTATC-TGGATGTGG......................................................................................................	18	1	1.00	1	0	0	0	0	1	0	0
..................................................GTGGGTATC-TGGATGTGGTTGGCTC...............................................................................................	25	1	1.00	1	0	0	0	0	0	1	0
..................................................GTGGGTATC-TGGATGTGGTTGGTA................................................................................................	24	1	1.00	1	0	0	0	0	0	1	0
...................................................TGGGTATC-TGGATGTGGTTGGC.................................................................................................	22	1	1.00	1	1	0	0	0	0	0	0
..................................................................................................TCTCACATTTACATATTCACGC...................................................	22	1	1.00	1	0	0	0	0	0	1	0
.....................................................................................................CACATTTACATATTCACAGT..................................................	20	1	1.00	1	0	0	0	0	0	1	0
...................................................................................................CTCACATTTACATATTCACAGTAA................................................	24	1	1.00	1	1	0	0	0	0	0	0
..................................................................................................TCTCACATTTACATATTCACAAAA.................................................	24	1	1.00	1	1	0	0	0	0	0	0
..................................................................................................TCTCACATTTACATATTCACC....................................................	21	1	1.00	1	0	0	0	1	0	0	0
..................................................GTGGGTATC-TGGATGTGGTTGGCTCT..............................................................................................	26	1	1.00	1	0	0	0	0	0	1	0

dgr_13

scaffold_14906:5529300-5529365 -

Known Ortholog

Mirtron

intron

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads