dgr_129

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- AAATTGTGCACCTGCAGGCCGGCCAATGTGGCAATCAGATTGGATCAAAGGTGCGTATAATTAACATTCAATTAGTCTCAGCCACACACACATTGAACGCCCACCAATAATTTCTTTCCACATTTTTCACAGTATTCCATTCCTAACCTCACATGTTTAATTATAAAACCGAATGGAATAAACGCGCTCTTTTTCTCTCTCTGCTTTTCACGCTCAATCTCGTACCCACCCTCCCTCCCTTCCTCCCTCTC ************************************************((((((..........((((((..((...........))..))))))...................................((((((((((............................)))))))))).))))))..............************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M041 female body	V109 male body
....................................................................................................................................................................................................................CTCAATCTCGTACCCACCCTC..................	21	0	1	1.00	1	1	0
...............................CAATCAGATTGGATCAAAGTTCTG....................................................................................................................................................................................................	24	3	1	1.00	1	0	1
........................AATGCGGCAATCAAATTGGTT..............................................................................................................................................................................................................	21	3	14	0.07	1	1	0

TTTAACACGTGGACGTCCGGCCGGTTACACCGTTAGTCTAACCTAGTTTCCACGCATATTAATTGTAAGTTAATCAGAGTCGGTGTGTGTGTAACTTGCGGGTGGTTATTAAAGAAAGGTGTAAAAAGTGTCATAAGGTAAGGATTGGAGTGTACAAATTAATATTTTGGCTTACCTTATTTGCGCGAGAAAAAGAGAGAGACGAAAAGTGCGAGTTAGAGCATGGGTGGGAGGGAGGGAAGGAGGGAGAG ************************************************((((((..........((((((..((...........))..))))))...................................((((((((((............................)))))))))).))))))..............************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M041 female body	V109 male body
................................................TCCACGCATATTAATTGTAAG......................................................................................................................................................................................	21	0	1	1.00	1	1	0
......................................................................................................................................................................................................................TTAAGAGAATGGGTGGGAGGGA...............	22	3	2	0.50	1	1	0
......................................................................................................................................................................................................................GTTAGAGCATGGCCGGGTG..................	19	3	20	0.05	1	0	1

Species	Coordinate	ID	Alignment
droGri2	scaffold_14830:4243584-4243834 -	dgr_129	AAATTGTGCACCTGCAGGCCGGCCAATGTGGCAATCAGATTGGATCAAAGGTGCGTATAATTAACA----TTCA--ATTAGTCT--CA-GCCA--CAC---ACACATTGAACG--CC----------------------------------C-----AC-------C-AAT--------------------AATTTCTT----T----------CCACAT-TTT---------TCACAGTATTCCATTCCTAACCTCACATGTTTAATTATAAAACCGAATGGA-A--T-------------------A---------AACG----CGCT---------------CTTTTTCTCTCTCTGC---------------TTTTCACGCTCAATCT------CG----------------TA------C----CCACCCTCCCTCCC------------------TTCCTCCCT-------CTC
droVir3	scaffold_13047:15770398-15770633 +		AAATTGTGCACTTGCAGGTCGGCCAATGCGGCAATCAAATTGGTTCAAAGGTGCGTATAATCAATA----TTCC--ATTAGTGT--GC--CAG------------TTTGGACG--CC------------C---------------------CTTTTGAT-------C-A----------------------ATTATTTA----G--------------ATTTTT---------TCACTGT-----ATTCCTAACCTCACATCTTAAATTATAAAACAGAACGAA-A--T-------------------A---------AAAG----CGCT---------------CTGCGC-------------------------TTTCCACGCTCAATCT------CTTTCGC------TC---TG------CCG--CCGCTT--CCTCTC------------------GCTCTCGCT-------CTC
droMoj3	scaffold_6540:19277801-19278046 +		AAATCGTGCACCTGCAGGCCGGCCAATGCGGCAATCAGATTGGTTCAAAGGTACGTATAATTAATAACAATTCCTCCTCAGTGC--CA--CAC------------ATTCGACG--C-------------C---------------------CC-TTAAT-------G-A----------------------ATAGTTTC----G--------------ACTTTT---------TCACAAT-----ATTCCTAACCTCACATGTTTAATTATAAAACAGAACGAA-A--T-------------------A---------ATCG----CGCT---------------CTTTGCA-----------------------CTTTCCACGCTCAATCT------CTTTCGC------TG---TG------CCGTGCCGCACGCTCTCTT------------------TCCCGCGCT-------CTC
droWil2	scf2_1100000004921:1021537-1021879 -		AAATTGTTCATCTACAGGCCGGCCAATGTGGCAATCAAATCGGTTCAAAGGTGCGTATAATTGATA----TGCA--ATTAGTGT--CC--CAT-------------ATACATACATCCATACATACATACATATGTATATAAGCAAGAGGACT-TTGCAAATTACTTTTACGAGTACTCGTAGTAGGTGCCA------------------------GTATTTTTGCTTCTCAATCGC--T------TTCCTAACCTCACATGTTTAATTATAAAACAGAATGAG-AAA---------------ATAAAAT------GAAA------TTT-TCTTGGCACGC---TCTCACTA-------------------GCCAGCCGCCTCTTTCAATCTTTCCCTCTTTCTCTTTGGTTTAT-TATTTATGCT----CTCTCTCTCTCTC------------------CCTCTCCCT-------CTC
dp5	2:8274301-8274549 +		AAATTGTTCATCTACAGGCGGGCCAGTGCGGCAATCAGATCGGTTCAAAGGTGCGTATAATTAATA----TTCA--ATTAGAGA--CC-GCACAAGTCATG-----GCACACA----------------C---------------------CT-TT-CT-------C-T----------------------G--------------------------AC-TTT---------TCGCTA-----CGTATCTAACCTCACATGTTTAATTATAAAACAGAATCGA-A--TCGAAAGAGAGAAAG---CAGC------AAAA------CGT-TCTGCGCGCGC---TCG------CTCTCTGATTTT---------------------------G--------TCGC------TC---TT------C----CCGGTTACTCTCTC------------------TATCTCTCT-------CTC
droPer2	scaffold_0:2110214-2110462 +		AAATTGTTCATCTACAGGCGGGCCAGTGCGGCAATCAGATCGGTTCAAAGGTGCGTATAATTAATA----TTCA--ATTAGAGA--CC-GCACAAGTCATG-----GCACACA----------------C---------------------CT-TT-CT-------C-T----------------------G--------------------------AC-TTT---------TCGCTA-----CGTATCTAACCTCACATGTTTAATTATAAAACAGAATCGA-A--TCGAAAGAGAGAAAG---CAGC------AAAA------CGT-TCTGCGCGCGC---TCG------CTCTCTGATTTT---------------------------G--------TCGC------TC---TT------C----CCGGTTACCCTCTC------------------TCTCTCTCT-------CTC
droAna3	scaffold_13340:21952381-21952558 -		AAATCGTCCATCTGCAGGCGGGCCAATGTGGCAATCAGATCGGTTCAAAGGTGCGTATGATTAATA----TTTC--ATAGGTGCCGTA-GCAC--AAC---------AGCGCA----------------C---------------------CC-TTGCT-------C-G----------------------ATAATCTA----TTTTTTTTTTTTTGTATTTTC---------ACGC--T------ATCCTAACCTCACATGTTTAATTATAAAACCGAGTGAG-A--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBip1	scf7180000396583:233864-234054 +		AAATCGTGCATCTGCAGGCGGGCCAGTGCGGCAATCAGATTGGTTCAAAGGTGCGTATGATTGATA----TTCC--CCAAGGGCCTTC-GCCC--AGC---------AGCGCA----------------C---------------------CC-TTGCC-------C-G----------------------ATTACCATTTTTT------------TTATTTTC---------ACGC--T------ATCCTAACCTCACATGTTTAATTATAAAACCGAGTGAG-A--A-----CCGA-------ACCG---------AACA----CACT---------------CTCT-----------------------------------------------------------------------------------------------------------------------------------
droKik1	scf7180000302475:1009044-1009256 +		AAATCGTACATCTGCAGGCGGGCCAGTGCGGCAACCAGATCGGTTCAAAGGTGCGTATAATTAATA----TTCA--GTTGGTGC--CC-GCAT--------------CGCGCA----------------C---------------------CT-CTGCT-------C-C----------------------ATTTTCTA----T------------TTATTTTT---------TCGC--T------ATCCTAACCTCACATGTTTAATTATAAAACATAGTGAA-A--A------CGA----G---CAGCGACTATAAATCG----CGCT---------------CTCCTCCTC------------------------------------------------------------------------------------------------GTTTCC-----TTCCTCTCT-------CTC
droFic1	scf7180000453826:124107-124314 +		AAATTGTGCATCTGCAGGCGGGCCAGTGCGGCAATCAGATCGGTTCGAAGGTGCGTATAATTAATA----TTCC--ATCGGTG--------------------------------------------------------------------------CT-------C-T----------------------ATTTTCTC----G------------CTGC-TTT---------TCGC--G------TTCCTAACCTCACATGTTTAATTATAAAACAGAGTGGA-A--C-----CAGA----G---CAGC-ACTATAAAT------CGT-TCTTTACGCGC---TCTTTTCC------------------GACGACT-----------------------------------------------------------------------------CTCGCCTCTCCTCTCT-------CTC
droEle1	scf7180000491280:4212842-4213085 +		AAATTGTGCATCTGCAGGCGGGCCAGTGCGGCAATCAGATCGGATCGAAGGTGCGTATAATTGATA----TTCC--ATTGGGGC--CT-CTAT-------------TTGCACA----------------C---------------------CT-TTGCT-------C-T----------------------ATTTTCTC----G------------CTAC-TTT---------TCGC--T------ATTCTAACCTCACATGTTTAATTATAAAACAGAGTGGA-A--A---TAGAGA----G---CACCGACTATAAAT------CGT-TCTTGGCGCGC---TCTTTTTCT------------------TCGAC-----------------------------------TCTCGAA------T----CTAGAC--TCTCT------------CC-----TCTCTCTCT-------CTT
droRho1	scf7180000779538:446435-446662 +		AAATCGTGCATCTGCAGGCGGGCCAGTGCGGCAACCAGATCGGTTCGAAGGTGCGTATAATTGATA----TTCC--ATAGGTGC--GTCGAAC--------------TACACA----------------C---------------------CT-TTGCT-------C-T----------------------ATTTTCTC----G------------CCAT-TTT---------TCGC--T------ATCCTAACCTCACATGTTTAATTATAAAACAGAGTGGA-A--A------AGA----G---TACCGACTATAAAT------CGT-TCTTGGCGCGC---TCTTTTTCT------------------TTGGC-----------------------------------TC--------------------------------TCTAC---TCTCT-------CCTCT-------CTC
droBia1	scf7180000302075:3002534-3002766 +		AAATTGTGCATCTGCAGGCGGGCCAGTGCGGCAACCAGATCGGTTCGAAGGTGCGTATAATTGATA----TTCC--AAGGGGGA--CC--CAT--------------CGCACA----------------C---------------------CT-TTGCT-------C-T----------------------ATATTCTC----G------------C-ATTTTT---------TCGC--T------ATCCTAACCTCACATGTTTAATTATAAAACAGAGTGGATGAA-----AAAGAGAA------GGCTTCTATAAAT------CGT-TCTTGGGGCACGACTCTCTC----TCT--------C-----------------------------------------------------------------------------TCTCTACGATTCTCG-----C--CCCT-------CTC
droTak1	scf7180000414170:40165-40397 -		AAATCGTTCATCTGCAGGCAGGCCAGTGCGGCAATCAGATCGGTTCGAAGGTGCGTATAATTGATA----TTCC--AACGGTGC--CC-GCAT--------------CGTATA----------------C---------------------CT-TTGCT-------C-T----------------------ATTTTCTC----G------------CTATTTTT---------TCGC--T------ATCCTAACCTCACATGTTTAATTATAAAACAGAGTGGC-GGA-----AAAGAGG------CAGCGACTATAAAT-TCCCCCGT-TCT------------CTCTCTCTATCT--------C-----------------------------------------------------------------------------TCTCTACAATTCTCG-----CCTCTCT-------CTT
droEug1	scf7180000409787:1795476-1795714 +		AAATCGTTCATCTGCAGGCGGGCCAGTGCGGCAATCAGATCGGTTCGAAGGTGCGTATAATTGATA----TTCC--ATCGGT----------------------------ATA----------------T---------------------CT-TTGCT-------C-T----------------------ATTTTATC----G------------CTATTTTT---------TCGC--T------ATCCTAACCTCACATGTTTAATTATAAAACAGAGTGAA-A--A----AAAGAGC------CAGCGACTATAAAT------TGT-TCTTGTCG-GC---TCT------CCCTCTCACTAT---------------------------C--------TCGC------TC------------------------------TCTCTATGATTCTCC-----CCTCTCTTTTGGTGCTT
dm3	chr3R:23813652-23813870 -		AAATTGTGCATCTGCAGGCGGGCCAGTGCGGCAATCAGATCGGTTCGAAGGTGCGTATAATTGATA----TTCC--ATCGGTGT--TC-GCAT--------------CACAGA----------------C---------------------CT-TTGCT-------C-T----------------------ATTTTATA----G------------CTAC-TTT---------TCGCTA-----CTATCCTAACCTCACATGTTTAATTATAAAACAGGGGGAA-A--T--------------GAAGAA---------AGAG----CGCT---------------CTTTGCCTCTCT----------CACTGCGACTT-----------------------------------------------------------TCTCTC------------------TCTCTCTCT-------CTC
droSim2	3r:23212728-23212938 -		AAATTGTGCATCTGCAGGCGGGCCAGTGCGGCAATCAGATCGGTTCGAAGGTGCGTATAATTGATA----TTCC--ACCGGTGT--TC-GCAT--------------CGCGGA----------------C---------------------CT-TTGCT-------C-T----------------------ATTTTCTA----A------------ATAC-TTT---------TCGC--T------ATCCTAACCTCACATGTTTAATTATAAAACAGGGGAAT-AAA---------------GAAGAA---------AGAG----CGCT---------------CTTTGCCTCTCT--------CTCACTGCGACT-------------------------------------------------------------------------------------TTCTCTCT-------CTC
droSec2	scaffold_22:436003-436217 -		AAATTGTGCATCTGCAGGCGGGCCAGTGCGGCAATCAGATCGGTTCGAAGGTGCGTATAATTGATA----TTCC--ACCGGTGT--TC-GCAT--------------CGCAGA----------------C---------------------CT-TTGCT-------C-T----------------------ATTTTCTA----G------------ATAC-TTT---------TCGC--T------ATCCTAACCTCACATGTTTAATTATAAAACAGGGGAAT-AAA---------------GAAGAA---------AGAG----CGCT---------------CTTTGCCTCTCT--------CTCACTGCGACTT---------------------------------------------------------------TC------------------TCTCTCTCT-------CTC
droYak3	3R:22685822-22686025 +		AAATTGTGCATCTGCAGGCGGGCCAGTGCGGCAATCAGATCGGTTCGAAGGTGCGTATAATTGATA----TTCC--ATCGGTGT--TC-GCAT--------------CGCAGA----------------C---------------------CT-TTGCT-------C-T----------------------ATTTTCTA----G------------CCACTTTT---------TCGC--T------ATCCTAACCTCACATGTTTAATTATAAAACAGGCGGAA-A--A--------------GTAGAA---------AGAG----CGCT---------------CTTTGCCTCTCT----------CATTGTGACTTTC-------------------------------------------------------------------------------------------------CTT
droEre2	scaffold_4820:4231069-4231309 +		AAATTGTGCATCTGCAGGCGGGCCAGTGCGGCAATCAGATCGGTTCGAAGGTGCGTATAATTGATA----TTCC--ATCGGTGT--TC-GCAT--------------CGCAGA----------------C---------------------CT-TTGCT-------C-T----------------------ATTTTCTG----G------------CCAC-TTT---------TCGC--T------ATCCTAACCTCACATGTTTAATTATAAAACAGGGGGAA-A--A--------------GTAGAA---------AGAG----CGCT---------------TTTCGCCTCTCT------------CTGCGACTTTCTTCTCTCAATCT------CTC----------------T------C----CTGCTCCCTCTCTC------------------TCTCTCTCT-------TTT

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droGri2

AAATTGTGCACCTGCAGGCCGGCCAATGTGGCAATCAGATTGGATCAAAGGTGCGTATAATTAACA----TTCA--ATTAGTCT--CA-GCCA--CAC---ACACATTGAACG--CC----------------------------------C-----AC-------C-AAT--------------------AATTTCTT----T----------CCACAT-TTT---------TCACAGTATTCCATTCCTAACCTCACATGTTTAATTATAAAACCGAATGGA-A--T-------------------A---------AACG----CGCT---------------CTTTTTCTCTCTCTGC---------------TTTTCACGCTCAATCT------CG----------------TA------C----CCACCCTCCCTCCC------------------TTCCTCCCT-------CTC	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
................................................................................................................................................................................................................................................................................................................................................................................................CTCAATCT------CG----------------TA------C----CCACCCTC...........................................	21	1	1.00	1	1	0

droVir3

AAATTGTGCACTTGCAGGTCGGCCAATGCGGCAATCAAATTGGTTCAAAGGTGCGTATAATCAATA----TTCC--ATTAGTGT--GC--CAG------------TTTGGACG--CC------------C---------------------CTTTTGAT-------C-A----------------------ATTATTTA----G--------------ATTTTT---------TCACTGT-----ATTCCTAACCTCACATCTTAAATTATAAAACAGAACGAA-A--T-------------------A---------AAAG----CGCT---------------CTGCGC-------------------------TTTCCACGCTCAATCT------CTTTCGC------TC---TG------CCG--CCGCTT--CCTCTC------------------GCTCTCGCT-------CTC	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
........................AATGCGGCAATCAAATTGGTTCAAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	3.00	3	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............GCAGGTCGGCCAATGCGGCAATC............................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
AAATTGTGCACTTGCAGGTCGGCC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	2.00	2	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....GTGCACTTGCAGGTCGGCC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	2.00	2	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........CTTGCAGGTCGGCCAATGCGGCA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..ATTGTGCACTTGCAGGTCGGCC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	2.00	2	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............TGCAGGTCGGCCAATGCGGCAATCA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................ATGCGGCAATCAAATTGGTTCAA................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....TGTGCACTTGCAGGTCGGCC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................AATGCGGCAATCAAATTGGTTC..................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............GCAGGTCGGCCAATGCGGCA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....TGTGCACTTGCAGGTCGGCCAATGCGGCA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................	29	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................GGTCGGCCAATGCGGCAATCAAATTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............TGCAGGTCGGCCAATGCGGCAA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0
........................AATGCGGCAATCAAATTGGTT...................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................AACAGAACGAA-A--T-------------------A---------AAAG----CG........................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
.AATTGTGCACTTGCAGGTCGGCC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........CTTGCAGGTCGGCCAATGCGGCAAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0

droMoj3

AAATCGTGCACCTGCAGGCCGGCCAATGCGGCAATCAGATTGGTTCAAAGGTACGTATAATTAATAACAATTCCTCCTCAGTGC--CA--CAC------------ATTCGACG--C-------------C---------------------CC-TTAAT-------G-A----------------------ATAGTTTC----G--------------ACTTTT---------TCACAAT-----ATTCCTAACCTCACATGTTTAATTATAAAACAGAACGAA-A--T-------------------A---------ATCG----CGCT---------------CTTTGCA-----------------------CTTTCCACGCTCAATCT------CTTTCGC------TG---TG------CCGTGCCGCACGCTCTCTT------------------TCCCGCGCT-------CTC	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
................................AATCAGATTGGTTCAAAGGTACGT........................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	1
...........CTGCAGGCCGGCCAATGCG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0
.......................CAATGCGGCAATCAGATTG......................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0
.............................GGCAATCAGATTGGTTCAAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
...............AGGCCGGCCAATGCGGCAATCAGA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................AATCT------CTTTCGC------TG---TG------CCGTGCCG................................................	24	1	1.00	1	0	0	0	0	0	1
..................CCGGCCAATGCGGCAATCAGATTGGTT...................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0
....................GGCCAATGCGGCAATCAGATTGGTT...................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0
...........CTGCAGGCCGGCCAATGCGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
...................................................................................................................................................................................................................................................................................CAGAACGAA-A--T-------------------A---------ATCG----CGCT---------------.......................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
........................AATGCGGCAATCAGATTGGT....................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
..................CCGGCCAATGCGGCAATCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
..........................TGCGGCAATCAGATTGGTTCA.................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	1

droWil2

AAATTGTTCATCTACAGGCCGGCCAATGTGGCAATCAAATCGGTTCAAAGGTGCGTATAATTGATA----TGCA--ATTAGTGT--CC--CAT-------------ATACATACATCCATACATACATACATATGTATATAAGCAAGAGGACT-TTGCAAATTACTTTTACGAGTACTCGTAGTAGGTGCCA------------------------GTATTTTTGCTTCTCAATCGC--T------TTCCTAACCTCACATGTTTAATTATAAAACAGAATGAG-AAA---------------ATAAAAT------GAAA------TTT-TCTTGGCACGC---TCTCACTA-------------------GCCAGCCGCCTCTTTCAATCTTTCCCTCTTTCTCTTTGGTTTAT-TATTTATGCT----CTCTCTCTCTCTC------------------CCTCTCCCT-------CTC	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
.AATTGTTCATCTACAGGCCGGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	2.00	2	0	1	0	1	0
....TGTTCATCTACAGGCCGGCCAATGTGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	2.00	2	0	2	0	0	0
.........................................................................................................................................................................................................................................................................AATTATAAAACAGAATGAG-AA.................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0
.......................CAATGTGGCAATCAAATCGGTTCAAAGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	1	0	0
...TTGTTCATCTACAGGCCGGCCAATGT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	1	0
.............ACAGGCCGGCCAATGTGGCAAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	1
........................AATGTGGCAATCAAATCG......................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	1	0
..................................................................................................................................................................................................................................................................................................................................................................................................CAATCTTTCCCTCTTTCTCTTTGGT.....................................................................	25	1	1.00	1	0	0	0	1	0
.............................................................................................................................................................................GTACTCGTAGTAGGTGCCA------------------------........................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	1	0
..............................................................................................................ATACATCCATACATACATACATATGTAT......................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	1	0	0	0
......TTCATCTACAGGCCGGCCAATGTGGCA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0
...........CTACAGGCCGGCCAATGTGGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0
.......................................................................................................................................................................................................................................................................TTAATTATAAAACAGAATGAG-AA.................................................................................................................................................................................................	23	1	1.00	1	0	0	0	1	0
.......................................................................................................................................................................................................................................................................TTAATTATAAAACAGAATGAG-AAA---------------ATAA.............................................................................................................................................................................	28	1	1.00	1	0	0	0	1	0
...................CGGCCAATGTGGCAATCAAATCGGTTCAA................................................................................................................................................................................................................................................................................................................................................................................................................................................	29	1	1.00	1	0	0	0	1	0
..........................................................................................................................................................................................................................................CGC--T------TTCCTAACCTCACATGT.........................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	1	0
.......................................................................................................................................................................................................................................................................TTAATTATAAAACAGAATGAG-AAA---------------ATA..............................................................................................................................................................................	27	1	1.00	1	0	0	0	1	0
.....GTTCATCTACAGGCCGGCCAATGT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	1	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................AT-TATTTATGCT----CTCTCT............................................	18	2	0.50	1	0	0	0	1	0
...............................................................................................................TACATCCATACATACATACATATGT........................................................................................................................................................................................................................................................................................................................................................	25	13	0.15	2	0	1	0	1	0

dp5

AAATTGTTCATCTACAGGCGGGCCAGTGCGGCAATCAGATCGGTTCAAAGGTGCGTATAATTAATA----TTCA--ATTAGAGA--CC-GCACAAGTCATG-----GCACACA----------------C---------------------CT-TT-CT-------C-T----------------------G--------------------------AC-TTT---------TCGCTA-----CGTATCTAACCTCACATGTTTAATTATAAAACAGAATCGA-A--TCGAAAGAGAGAAAG---CAGC------AAAA------CGT-TCTGCGCGCGC---TCG------CTCTCTGATTTT---------------------------G--------TCGC------TC---TT------C----CCGGTTACTCTCTC------------------TATCTCTCT-------CTC	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
...........CTACAGGCGGGCCAGTGCGGCA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0
.......................CAGTGCGGCAATCAGATCG......................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
................................AATCAGATCGGTTCAAAGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0
.AATTGTTCATCTACAGGCGGGCCAGTGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	0	0	1	0	0	0	0	0	0	0
.............ACAGGCGGGCCAGTGCGGCAATCA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0

droPer2

AAATTGTTCATCTACAGGCGGGCCAGTGCGGCAATCAGATCGGTTCAAAGGTGCGTATAATTAATA----TTCA--ATTAGAGA--CC-GCACAAGTCATG-----GCACACA----------------C---------------------CT-TT-CT-------C-T----------------------G--------------------------AC-TTT---------TCGCTA-----CGTATCTAACCTCACATGTTTAATTATAAAACAGAATCGA-A--TCGAAAGAGAGAAAG---CAGC------AAAA------CGT-TCTGCGCGCGC---TCG------CTCTCTGATTTT---------------------------G--------TCGC------TC---TT------C----CCGGTTACCCTCTC------------------TCTCTCTCT-------CTC	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
.....................................................................................................................................................................................................................................................................................................................................................................CTGATTTT---------------------------G--------TCGC------TC---TT------C----C..................................................	19	1	2.00	2	2	0	0	0	0	0
................................................................................................................................................................................................................................................................................AAACAGAATCGA-A--TCGAAAGAGAGA....................................................................................................................................................................................	25	1	1.00	1	0	0	1	0	0	0
.AATTGTTCATCTACAGGCGGGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0
........CATCTACAGGCGGGCCAGTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0
....TGTTCATCTACAGGCGGGCCA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	1	0	0
................................AATCAGATCGGTTCAAAGCGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................	21	5	0.20	1	1	0	0	0	0	0

droAna3

AAATCGTCCATCTGCAGGCGGGCCAATGTGGCAATCAGATCGGTTCAAAGGTGCGTATGATTAATA----TTTC--ATAGGTGCCGTA-GCAC--AAC---------AGCGCA----------------C---------------------CC-TTGCT-------C-G----------------------ATAATCTA----TTTTTTTTTTTTTGTATTTTC---------ACGC--T------ATCCTAACCTCACATGTTTAATTATAAAACCGAGTGAG-A--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
.............GCAGGCGGGCCAATGTGGCA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	2.00	2	1	1	0	0	0	0
..........................TGTGGCAATCAGATCGGTTC..................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0
...TCGTCCATCTGCAGGCGGGCC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0
.........................ATGTGGCAATCAGATCGGT....................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0
...........CTGCAGGCGGGCCAATGTGGCAATCA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0
AAATCGTCCATCTGCAGGCGGGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	1	0
........................................................................................................................................................................................................................................................................TAATTATAAAACCGAGTGA.....................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0	0
...........CTGCAGGCGGGCCAATGT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0
.............................GGCAATCAGATCGGTTCAAAGGTGCGT........................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	1	0
...........................GTGGCAATCAGATCGGTTCAAAGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	1	0
........CATCTGCAGGCGGGCCAATGTGGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0	0	0
.AATCGTCCATCTGCAGGCGGGCC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0
........................AATGTGGCAATCAGATCGGTT...................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0
.......................CAATGTGGCAATCAGATCGGTTCAAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0
.............................GGCAATCAGATCGGTTCA.................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	1
..ATCGTCCATCTGCAGGCGGGCC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0
.........ATCTGCAGGCGGGCCAATGTGGCA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0
.....GTCCATCTGCAGGCGGGCCAATGTGGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	1	0	0	0
.......................CAATGTGGCAATCAGATCGGTTC..................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0
........................AATGTGGCAATCAGATCGGTTCAAAGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0
.....................................GATCGGTTCAAAGGTGCGTATGATT..................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0
.AATCGTCCATCTGCAGGCGGGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0
.........................ATGTGGCAATCAGATCGGTTCA.................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	1	0
............TGCAGGCGGGCCAATGTGGCAATC............................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0

droBip1

AAATCGTGCATCTGCAGGCGGGCCAGTGCGGCAATCAGATTGGTTCAAAGGTGCGTATGATTGATA----TTCC--CCAAGGGCCTTC-GCCC--AGC---------AGCGCA----------------C---------------------CC-TTGCC-------C-G----------------------ATTACCATTTTTT------------TTATTTTC---------ACGC--T------ATCCTAACCTCACATGTTTAATTATAAAACCGAGTGAG-A--A-----CCGA-------ACCG---------AACA----CACT---------------CTCT-----------------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droKik1

AAATCGTACATCTGCAGGCGGGCCAGTGCGGCAACCAGATCGGTTCAAAGGTGCGTATAATTAATA----TTCA--GTTGGTGC--CC-GCAT--------------CGCGCA----------------C---------------------CT-CTGCT-------C-C----------------------ATTTTCTA----T------------TTATTTTT---------TCGC--T------ATCCTAACCTCACATGTTTAATTATAAAACATAGTGAA-A--A------CGA----G---CAGCGACTATAAATCG----CGCT---------------CTCCTCCTC------------------------------------------------------------------------------------------------GTTTCC-----TTCCTCTCT-------CTC	Size	Hit Count	Total Norm	Total
No Reads

droFic1

AAATTGTGCATCTGCAGGCGGGCCAGTGCGGCAATCAGATCGGTTCGAAGGTGCGTATAATTAATA----TTCC--ATCGGTG--------------------------------------------------------------------------CT-------C-T----------------------ATTTTCTC----G------------CTGC-TTT---------TCGC--G------TTCCTAACCTCACATGTTTAATTATAAAACAGAGTGGA-A--C-----CAGA----G---CAGC-ACTATAAAT------CGT-TCTTTACGCGC---TCTTTTCC------------------GACGACT-----------------------------------------------------------------------------CTCGCCTCTCCTCTCT-------CTC	Size	Hit Count	Total Norm	Total
No Reads

droEle1

AAATTGTGCATCTGCAGGCGGGCCAGTGCGGCAATCAGATCGGATCGAAGGTGCGTATAATTGATA----TTCC--ATTGGGGC--CT-CTAT-------------TTGCACA----------------C---------------------CT-TTGCT-------C-T----------------------ATTTTCTC----G------------CTAC-TTT---------TCGC--T------ATTCTAACCTCACATGTTTAATTATAAAACAGAGTGGA-A--A---TAGAGA----G---CACCGACTATAAAT------CGT-TCTTGGCGCGC---TCTTTTTCT------------------TCGAC-----------------------------------TCTCGAA------T----CTAGAC--TCTCT------------CC-----TCTCTCTCT-------CTT	Size	Hit Count	Total Norm	Total
No Reads

droRho1

AAATCGTGCATCTGCAGGCGGGCCAGTGCGGCAACCAGATCGGTTCGAAGGTGCGTATAATTGATA----TTCC--ATAGGTGC--GTCGAAC--------------TACACA----------------C---------------------CT-TTGCT-------C-T----------------------ATTTTCTC----G------------CCAT-TTT---------TCGC--T------ATCCTAACCTCACATGTTTAATTATAAAACAGAGTGGA-A--A------AGA----G---TACCGACTATAAAT------CGT-TCTTGGCGCGC---TCTTTTTCT------------------TTGGC-----------------------------------TC--------------------------------TCTAC---TCTCT-------CCTCT-------CTC	Size	Hit Count	Total Norm	Total
No Reads

droBia1

AAATTGTGCATCTGCAGGCGGGCCAGTGCGGCAACCAGATCGGTTCGAAGGTGCGTATAATTGATA----TTCC--AAGGGGGA--CC--CAT--------------CGCACA----------------C---------------------CT-TTGCT-------C-T----------------------ATATTCTC----G------------C-ATTTTT---------TCGC--T------ATCCTAACCTCACATGTTTAATTATAAAACAGAGTGGATGAA-----AAAGAGAA------GGCTTCTATAAAT------CGT-TCTTGGGGCACGACTCTCTC----TCT--------C-----------------------------------------------------------------------------TCTCTACGATTCTCG-----C--CCCT-------CTC	Size	Hit Count	Total Norm	Total
No Reads

droTak1

AAATCGTTCATCTGCAGGCAGGCCAGTGCGGCAATCAGATCGGTTCGAAGGTGCGTATAATTGATA----TTCC--AACGGTGC--CC-GCAT--------------CGTATA----------------C---------------------CT-TTGCT-------C-T----------------------ATTTTCTC----G------------CTATTTTT---------TCGC--T------ATCCTAACCTCACATGTTTAATTATAAAACAGAGTGGC-GGA-----AAAGAGG------CAGCGACTATAAAT-TCCCCCGT-TCT------------CTCTCTCTATCT--------C-----------------------------------------------------------------------------TCTCTACAATTCTCG-----CCTCTCT-------CTT	Size	Hit Count	Total Norm	Total
No Reads

droEug1

AAATCGTTCATCTGCAGGCGGGCCAGTGCGGCAATCAGATCGGTTCGAAGGTGCGTATAATTGATA----TTCC--ATCGGT----------------------------ATA----------------T---------------------CT-TTGCT-------C-T----------------------ATTTTATC----G------------CTATTTTT---------TCGC--T------ATCCTAACCTCACATGTTTAATTATAAAACAGAGTGAA-A--A----AAAGAGC------CAGCGACTATAAAT------TGT-TCTTGTCG-GC---TCT------CCCTCTCACTAT---------------------------C--------TCGC------TC------------------------------TCTCTATGATTCTCC-----CCTCTCTTTTGGTGCTT	Size	Hit Count	Total Norm	Total
No Reads

dm3

AAATTGTGCATCTGCAGGCGGGCCAGTGCGGCAATCAGATCGGTTCGAAGGTGCGTATAATTGATA----TTCC--ATCGGTGT--TC-GCAT--------------CACAGA----------------C---------------------CT-TTGCT-------C-T----------------------ATTTTATA----G------------CTAC-TTT---------TCGCTA-----CTATCCTAACCTCACATGTTTAATTATAAAACAGGGGGAA-A--T--------------GAAGAA---------AGAG----CGCT---------------CTTTGCCTCTCT----------CACTGCGACTT-----------------------------------------------------------TCTCTC------------------TCTCTCTCT-------CTC	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
................................AATCAGATCGGTTCGAAGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......GCATCTGCAGGCGGGCCAGTGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................TAATTGATA----TTCC--ATCGGTGT--TC-GCA....................................................................................................................................................................................................................................................................................................................................................................................................	26	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
.......................CAGTGCGGCAATCAGATCGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................GCT---------------CTTTGCCTCTCT----------CACTGC...........................................................................................................	21	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................CCAGTGCGGCAATCAGATCGGTTC..................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....TGTGCATCTGCAGGCGGGCCAGTGCGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................T----------------------ATTTTATA----G------------CTAC-TTT---------TCGCT..................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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.........................................................................................................................................................................................................................................................................................................................................T---------------CTTTGCCTCTCT----------CACTGCG..........................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................TCT----------CACTGCGACTT-----------------------------------------------------------TCTCTC------------------TCT................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............GCAGGCGGGCCAGTGCGGCAATCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...TTGTGCATCTGCAGGCGGGCCAGTGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................GTGCGGCAATCAGATCGGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................T---------------CTTTGCCTCTCT----------CACTGCATG........................................................................................................	22	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

AAATTGTGCATCTGCAGGCGGGCCAGTGCGGCAATCAGATCGGTTCGAAGGTGCGTATAATTGATA----TTCC--ACCGGTGT--TC-GCAT--------------CGCGGA----------------C---------------------CT-TTGCT-------C-T----------------------ATTTTCTA----A------------ATAC-TTT---------TCGC--T------ATCCTAACCTCACATGTTTAATTATAAAACAGGGGAAT-AAA---------------GAAGAA---------AGAG----CGCT---------------CTTTGCCTCTCT--------CTCACTGCGACT-------------------------------------------------------------------------------------TTCTCTCT-------CTC	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
..ATTGTGCATCTGCAGGCG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....GTGCATCTGCAGGCGGGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........ATCTGCAGGCGGGCCAGTGCGGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..ATTGTGCATCTGCAGGCGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........TCTGCAGGCGGGCCAGTG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.AATTGTGCATCTGCAGGCGGGCCA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
..........................TGCGGCAATCAGATCGGT....................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
AAATTGTGCATCTGCAGGCG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................TGCGGCAATCAGATCGGTTC..................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................GGGCCAGTGCGGCAATCAGATCGGTTC..................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSec2

AAATTGTGCATCTGCAGGCGGGCCAGTGCGGCAATCAGATCGGTTCGAAGGTGCGTATAATTGATA----TTCC--ACCGGTGT--TC-GCAT--------------CGCAGA----------------C---------------------CT-TTGCT-------C-T----------------------ATTTTCTA----G------------ATAC-TTT---------TCGC--T------ATCCTAACCTCACATGTTTAATTATAAAACAGGGGAAT-AAA---------------GAAGAA---------AGAG----CGCT---------------CTTTGCCTCTCT--------CTCACTGCGACTT---------------------------------------------------------------TC------------------TCTCTCTCT-------CTC	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
.........ATCTGCAGGCGGGCCAGTGCGGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	4.00	4	0	0	4	0
.........ATCTGCAGGCGGGCCAGTGCGGCAAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	2.00	2	0	0	2	0
...........CTGCAGGCGGGCCAGTGCGGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	2.00	2	0	0	2	0
..........................TGCGGCAATCAGATCGGTT...................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0
..ATTGTGCATCTGCAGGCGGGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0
.................................ATCAGATCGGTTCGAAGT.............................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	1	0
.AATTGTGCATCTGCAGGCG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0
.........ATCTGCAGGCGGGCCAGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	1	0
.........ATCTGCAGGCGGGCCAGTGCGGCA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0
..ATTGTGCATCTGCAGGCGGG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	1	0
.......GCATCTGCAGGCGGGCCAGTGCGGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	1	0
..ATTGTGCATCTGCAGGCG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	1	0
.........................GTGCGGCAATCAGATCGGTTCG.................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0

droYak3

AAATTGTGCATCTGCAGGCGGGCCAGTGCGGCAATCAGATCGGTTCGAAGGTGCGTATAATTGATA----TTCC--ATCGGTGT--TC-GCAT--------------CGCAGA----------------C---------------------CT-TTGCT-------C-T----------------------ATTTTCTA----G------------CCACTTTT---------TCGC--T------ATCCTAACCTCACATGTTTAATTATAAAACAGGCGGAA-A--A--------------GTAGAA---------AGAG----CGCT---------------CTTTGCCTCTCT----------CATTGTGACTTTC-------------------------------------------------------------------------------------------------CTT	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
.AATTGTGCATCTGCAGGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0
.....GTGCATCTGCAGGCGGGC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	2.00	2	2	0	0	0	0	0	0	0	0	0	0
.....GTGCATCTGCAGGCGGGCCAGTGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
...TTGTGCATCTGCAGGCGGGCCAGTGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..................CGGGCCAGTGCGGCAATCAGATCGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
........................................................ATAATTGATA----TTCC--ATCGGT..............................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.....GTGCATCTGCAGGCGGGCC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................ACAGGCGGAA-A--A--------------GTAGAA---------AGA...............................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................TTTT---------TCGC--T------ATCCTAACCTCACATGC.........................................................................................................................................................................................................................	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
...........................GCGGCAATCAGATCGGTTC..................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...TTGTGCATCTGCAGGCGGGCCA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..ATTGTGCATCTGCAGGCGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.......GCATCTGCAGGCGGGCCAGTGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...........CTGCAGGCGGGCCAGTGCGGCC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
........CATCTGCAGGCGGGCCAGTGCGGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.....................GCCAGTGCGGCAATCAGATCGG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.........................GTGCGGCAATCAGATCGGTTCGAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...................GGGCCAGTGCGGCAATCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.................................ATCAGATCGGTTCGAAGTC............................................................................................................................................................................................................................................................................................................................................................................................................................................	19	4	0.25	1	0	0	1	0	0	0	0	0	0	0	0

droEre2

AAATTGTGCATCTGCAGGCGGGCCAGTGCGGCAATCAGATCGGTTCGAAGGTGCGTATAATTGATA----TTCC--ATCGGTGT--TC-GCAT--------------CGCAGA----------------C---------------------CT-TTGCT-------C-T----------------------ATTTTCTG----G------------CCAC-TTT---------TCGC--T------ATCCTAACCTCACATGTTTAATTATAAAACAGGGGGAA-A--A--------------GTAGAA---------AGAG----CGCT---------------TTTCGCCTCTCT------------CTGCGACTTTCTTCTCTCAATCT------CTC----------------T------C----CTGCTCCCTCTCTC------------------TCTCTCTCT-------TTT	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
....................GGCCAGTGCGGCAATCAGATCGGTTC..................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	2.00	2	0	0	0	0	2	0	0
........................AGTGCGGCAATCAGATCG......................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	1	0	0
........CATCTGCAGGCGGGCCAGTGCGGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................A---------AGAG----CGCT---------------TTTCGCCTCTCT------------CTGCGACC.......................................................................................................	29	1	1.00	1	0	1	0	0	0	0	0
...........CTGCAGGCGGGCCAGTGCGGCA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	1	0	0	0
.........ATCTGCAGGCGGGCCAGTGCGGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0	0
.........ATCTGCAGGCGGGCCAGTGCGGCAAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0	0
..ATTGTGCATCTGCAGGCGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	1	0	0
.....GTGCATCTGCAGGCGGGCCAGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	1	0	0
...........................GCGGCAATCAGATCGGTTCG.................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	1	0	0
...........................GCGGCAATCAGATCGGTTC..................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	1	0	0	0
........CATCTGCAGGCGGGCCAGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	1	0	0	0
........CATCTGCAGGCGGGCCAGTGCGGCA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	1	0	0	0
....................GGCCAGTGCGGCAATCAGATCGGTTCGAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................	29	1	1.00	1	0	0	0	0	1	0	0
.........ATCTGCAGGCGGGCCAGTGCGGCA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	1	0
...................GGGCCAGTGCGGCAATCAGATCGGTT...................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	1	0
...............................................................................................................GA----------------C---------------------CT-TTGCT-------C-T----------------------ATTTTCTG----G------------CC......................................................................................................................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0	0
.........................GTGCGGCAATCAGATCGGTTC..................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	1	0	0
.................................................................................................................................................................................................................................................................................AACAGGGGGAA-A--A--------------GTAGAA---------..................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	1	0

dgr_129

scaffold_14830:4243634-4243784 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads