dgr_103

exon [dgri_GLEANR_8643:7]; CDS [Dgri\GH23992-cds]; exon [dgri_GLEANR_8643:6]; CDS [Dgri\GH23992-cds]; intron [Dgri\GH23992-in]

Name	Class	Family	Strand
(GGA)n	Simple_repeat	Simple_repeat	+

##################################################------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------################################################## CTCCCGTCCTTCGTCACTCGGCGCAGGATCTCTCAGGGGTTCATTCCATAGTAACTATTTTCGCGGGGTTTGTGTTGGAATTTTTTTGCTCCTGTGCTCGGCAGACAGTGTTGAGTTNNNNNNNNNNNNNNNNNNNNNNNNNAGGAGGAGGAGGAGGAGGACGAGGAGGACGAGGAGGAGGAGCAGGAGGGCGTGTTATTGGTGGCAACCCTGCTTCCGATTGTTTGTTGCAACTTTATCGCCATCAGGCGGCCGATCACTGGCCGTATGATGATGTTGATGTTGATGCCGCCGATTT ************************************************...........((((.....))))......(((((((.(((((..((((((((.....))))))))..........................))))).))))))).((((.(((.(((((((((.((..((((((((...((............))...))))).)))..)).))))))....)))..))))).))..************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V109 male body
.............................................................................................GTGCTCGGCAGTCAGAGTT..........................................................................................................................................................................................	19	2	4	0.25	1	1

GAGGGCAGGAAGCAGTGAGCCGCGTCCTAGAGAGTCCCCAAGTAAGGTATCATTGATAAAAGCGCCCCAAACACAACCTTAAAAAAACGAGGACACGAGCCGTCTGTCACAACTCAANNNNNNNNNNNNNNNNNNNNNNNNNTCCTCCTCCTCCTCCTCCTGCTCCTCCTGCTCCTCCTCCTCGTCCTCCCGCACAATAACCACCGTTGGGACGAAGGCTAACAAACAACGTTGAAATAGCGGTAGTCCGCCGGCTAGTGACCGGCATACTACTACAACTACAACTACGGCGGCTAAA ************************************************...........((((.....))))......(((((((.(((((..((((((((.....))))))))..........................))))).))))))).((((.(((.(((((((((.((..((((((((...((............))...))))).)))..)).))))))....)))..))))).))..************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M041 female body
........................................................................................GAGGACACTAGCAGCCTG................................................................................................................................................................................................	18	3	14	0.07	1	1
............................................................................................................................................................................................................CATTGGGCCGAAGGCCAA............................................................................	18	3	20	0.05	1	1

Species	Coordinate	ID	Alignment
droGri2	scaffold_14822:346888-347185 +	dgr_103	CTCCCGTCCTTCGTCACTCGGCGCAGGATCTCTCAGGGGTTCATTCCATAGTAACTATTTTCGCGGGGTTTGTGTTGGAATTTTTTTGCTCCTGTGCTCGGCAGACAGTGTTGAGTTNNNNNNNNNNNNNNNNNNNNNNNNNAG-GAGG----AGGAGGAGG-------------------------------------------------------------------------------------------------------------------------------------A------------------G------------GACGAGGAGGACGAGGAG---------------------------------------------------------GAGGAGCAG---------GAGGG------CGTGTTATTGGTGGCAACCC------------------------------------------------------------------TGCTTCCGATTGTTTGTTGCAACTTTATCGCCAT------------------------------------------------------------------------------------------------CAGGCGG-----------------------------CC---GATCACT--GGC-CGTAT------GATGATGTTG-----ATGT---------------------TGATGCC---------------------------------GCCGATTT
droVir3	scaffold_12970:1898919-1899050 +		----------------------------------------------------------------------------------------------------------------------------------------------GA-GGAT---GATGAT---G-------------------------------------------------------------------------------------------------------------------------------------A------------------T------------GATGAGGAGGAGGAGGAA---------------------------------------------------------GAGCTGCTG---------GAGGA------GGAGCTGGAGGAGGAAACACCT----------------A-----------------------------T----------GCCGCTAGATCTCTA----------T--CA-----------------------------------------------------------AAGACCCGCCGTTGCGTCCGC----------------------------------------------------------------------TGACC--CA----C----------AAGCT-------------ATGCC-------------------------------------------------------GCC----A
droMoj3	scaffold_6500:14166505-14166659 -		----------------------------------------------------------------------------------------------------------------------------------------------GA-GCAG---GAGTAGGAGC-------------------------------------------------------------------------------------------------------------------------------------A------------------G------------GAGCAGGAGCAGGAGCAG---------------------------------------------------------GAGCAGGAG---------TTGGA-------GCCATGGC--TA---AAC--------------------------------------------------------------------------------CAGAAC-------------------TGTGCTTCGCTTTTTAGTTTTACAAATTGCTTAATGCCACACCACAGTGCCGCTGTTATGCATTC----------------------------------------------------------------------------------------------------CG-----ACCT---------------------TCCTACC---------------------------------TCCCTTTC
droWil2	scf2_1100000004909:9898092-9898269 +		----------------------------------------------------------------------------------------------------------------------------------------------AG-GAAG----GGGAAGATG-------------------------------------------------------------------------------------------------------------------------------------G------------------AGATGGAGATGAAGAGGAGGAGGATGGGCCA---------------------------------------------------------GAGCC----------------------------------------------ACAGAATG--------------------------------------------------------------------------G-----------------------------------------C--GGCGATGA-----------------------TATGGAACACCATTTAGATGGCGGCTCTGTTGTTGT----TGATCATCATCATCATCATCATGGCATCATGAATGGTG-TAG--AGGATCAGCAC------GTTGATGATG-----ATGA---------------------------------------------------------------TGACGA
dp5	3:8342447-8342590 -		----------------------------------------------------------------------------------------------------------------------------------------------GA-GATG---GAGGAG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------GACGAGGATGATGCGGCA---------------------------------------------------------AAGATGCAG---------CTCGA--------------------------------------------------------------------------------------------------------------------------------------------------------C--GGTGACCAAGGCAACATCGATGTGACCACGCCGCCCACAC---------------------------CCGGCGA-----------------------------CC---GAGCCCT--AGCCAGCAA------GCGCAAGT-A-----CTGTGATGAG----AACGAGA--------------------------------------------CGAAATTA
droPer2	scaffold_63:227366-227503 +		----------------------------------------------------------------------------------------------------------------------------------------------AG-GAGG----AGCAGGAGG-------------------------------------------------------------------------------------------------------------------------------------A------------------G------------GAAGAGGAGGAGGAGGAA---------------------------------------------------------GAGGAGGAG---------ACTGA------CGAGATCATTGTCG-------------------------------------------------------------------------------------AAATCGA------------------------------------------------------------------------------------------------------GCCGCCAGCTGGTTT----CCT------A--------CCCTTCGCCTCGG-ACA--ACAGCCAGTCG------GATGATGATG-----ATGA-------------------------------------------------------------TGAGGATG
droAna3	scaffold_13340:4279378-4279529 -		----------------------------------------------------------------------------------------------------------------------------------------------AG-GGGG----AGGGGGTAG-------------------------------------------------------------------------------------------------------------------------------------C------------------G------------GTACAGAAGCCACTGGTG---------------------------------------------------------GAGGCGGCG---------GCGGC------AGCGGTGGCAGTGG-------------------------------------------------------------------------------------CAGCGGC------------------------------------------------------------------------------------------------------AGTGTCGC----TGGCTGTGGC------AGTCACAACATTGTCGCCGGCA-GTC--ATGACCAGCTC------GCCAATGTCG-----CTGTCATGCA-------------------------------------------------------TCCAACAT
droBip1	scf7180000396570:240786-240943 +		----------------------------------------------------------------------------------------------------------------------------------------------AG-GGGT----AGGGGGAGG-------------------------------------------------------------------------------------------------------------------------------------C------------------G------------GTACAGAAGCCAGTGGCG---------------------------------------------------------GAATCGGAG---------GCGGCGGCGGCATCGGTGGCAGTGG-------------------------------------------------------------------------------------CAGCGCC------------------------------------------------------------------------------------------------------AGTGTCGC----TGGCTGTGGC------AGTCACAACATTGTCGCCGGCA-GTC--ATGACCAGCTC------GCCAATGTCG-----CTGTCATGCA-------------------------------------------------------GCCAACAT
droKik1	scf7180000299277:344725-344886 +		----------------------------------------------------------------------------------------------------------------------------------------------AG-GAGC----AGGAGGAGA-------------------------------------------------------------------------------------------------------------------------------------A------------------G------------GAGAAGGTGCTCAAGGAG---------------------------------------------------------CAGAAGGAG---------GAGAT------GATGATGGG--TG------------------------------------------------------------------ACCAGCCGGCTCTTA----------G--CGAGGAGCAACTACCGCCGGGCATGGCTTTT-GGT-------ATGGGTT--TGCCTC-----------------------------------------------------------TCAACG-----------------------------------------------------------AGGATGAG--------------GATAGCAACAGTGATGCC---------------------------------TCCA-ATG
droFic1	scf7180000453929:372178-372421 +		----------------------------------------------------------------------------------------------------------------------------------------------CC-CTTGTGCCGG----------------------------------------------------------------TGGTCAATTTTAATGCAAATTCCGACTTCAATTT----GCATTTCTTTGACACACCCGAGGACTCGTCCACCCAAGGGGCCTACAGCGAGGCCAAC------------AGCTTGGACTCCGAGCAG------------------------------GAAGAGGAGGACCAACAGCCTACGCAGCAGCAACAG---------CAGCA-------------------G-------------------------------------------------------------------------------------CAGCAAC------------------------------------------------------------------------------------------------------ATCATCGG----GAGCTGCAG---------------------------------------------------------------------------------GATTGCCTAAGTGC---CATCGAAGCGGATCCCTTGCAGTTGCTGCAGTGCGACGATTT
droEle1	scf7180000491087:107932-108064 +		----------------------------------------------------------------------------------------------------------------------------------------------AG-GAGG----ACGACGAGG-------------------------------------------------------------------------------------------------------------------------------------A------------------G------------GACGAAGAGGACGAGGAG---------------------------------------------------------GAGGATCAG---------GAGGA------GGCAGT-----------------------------------------------------------------GTCC---CAGCA---------------CCAGCAGCAGCAGCAGCAACAA------------------------------------------------------------------------------------------------CTGGCGG-----------------------------CC---GAGCAAC--AA----C-----------------A---------------ACGG-----------------------------------GCAGCTGCAGCAGCG-GCCGTCGT
droRho1	scf7180000779356:21214-21378 +		----------------------------------------------------------------------------------------------------------------------------------------------AG-CAGC----AGGAGCAGC----------------------------------------------------------------------------------------------------------------------------------AGGA------------------G------------CAGCAGGACCAGGATCAA---------------------------------------------------------CGGCA----------------------------------------------ACAGGAGGGGAAACAAATTTGCAATATAAATTTATGCGGATTTTTGC--GTCG---CAGCG---------------GCGCCGCCGACGTCGACGTCAT------------------------------------------------------------------------------------------------CGAATCG-----------------------------CG---TAGCC--CAGGCCATGCT------GCTGATGTCG-----ACGTCCC----------------------------------------------------------------AG
droBia1	scf7180000302126:3412322-3412469 -		----------------------------------------------------------------------------------------------------------------------------------------------AG-GACG----AGGAGGATG-------------------------------------------------------------------------------------------------------------------------------------A------------------C------------GACGAGGAGGACGAGGAG---------------------------------------------------------GAGGAGGAGGAGCACCAGCAGCA------GCAGCAGCAGCAGCAACAACAG-----------------------------------------------------------------------------CAGCAGCAGCAACAGCAGCAA------------------------------------------------------------------------------------------------CTTGCGG-----------------------------CC---GAGCAGC--AG----C-----------------A---------------GCGA-----------------------------------GCGGCGGCAGCGGCG-GCCGTAGT
droTak1	scf7180000413955:39083-39213 -		----------------------------------------------------------------------------------------------------------------------------------------------AG-GAGG----AGGACGAGG-------------------------------------------------------------------------------------------------------------------------------------A------------------G------------GATAACGAGGACGAGCAG---------------------------------------------------------GAGCAGCAG---------CTGTA----------------------------------CGGAG----------------------ATGCGGAGG---CCGTTT-CGGTCACCG---------------GCACGGGCAGCGATGGCGGCTT---------------------------------------------------------------------------------------TGT-GACGG----TGGTCAAGG-----------------------------------------------------------CGGATGAC--------------GA---------------------------------------------------CG--AG
droEug1	scf7180000409182:209160-209306 -		----------------------------------------------------------------------------------------------------------------------------------------------GA-AGAA---GAAGACGAGA-AGG-----AAGAAGACCAAGGCGGAGGAGGAAGGTAGATGTAAGTGCTTCTGTCTCTCAT--ATTTTGTT-CT-TTTCTGTCTTCATTTT----TTGAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTCCGATTTTTG----------A--CA-------------------------------------------------------------------------------------------------------------------------------------------------------------------TATGCCTGTGCAGGCA-------------ATACT-------------------------------------------------------ATCTATAT
dm3	chr3L:9698858-9698996 +		----------------------------------------------------------------------------------------------------------------------------------------------TC-GGAG---CAGCAG-AT---GCCCTCC--------------------------------------ATC-------GGGCAAACTTTGTTGCAGGATTGGGATGATAGTGCCACGCAATTGCCGGACGAGATCGAA------------------------------------------------GAGCAGGAGGAGGAGGAA---------------------------------------------------------GAGGG----------------------------------------------ACAGGAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGTGATG-----CTGCGCAGCA-------------------------------------------------------GCAGAACG
droSim2	3l:9456758-9456884 +		----------------------------------------------------------------------------------------------------------------------------------------------CA-GCCGGAGCAGCAG----TTGCCCTCT--------------------------------------ATC-------GGGCAGACTTTGTTGCAGGATTGGGATGATAGTGCCACGCAACTGCCGGACGAGATCGAA------------GAGGA------------------G------------GAGGAGGAGGAGGAGGAA---------------------------------------------------------GAGGG----------------------------------------------ACAGGAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGTG
droSec2	scaffold_0:1932641-1932768 +		----------------------------------------------------------------------------------------------------------------------------------------------TCAGCCGGAGCAGCAG----TTGCCCTCC--------------------------------------ATT-------GGGCAGACTTTGTTGCAGGATTGGGATGAAAGTGCCACGCAACTGCCGGACGAGATCGAA------------GAGGA------------------G------------GAGGAGAAGGAGGAGGAA---------------------------------------------------------GAGGG----------------------------------------------ACAGGAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGTG
droYak3	3R:14006452-14006606 -		----------------------------------------------------------------------------------------------------------------------------------------------GG-AGGA--CGAGGAC---G-------------------------------------------------------------------------------------------------------------AGATCGAG------------GAGGA---------------------------------CGACGAGGACGAGGTGATCGACATGGACGACTACGGCAGCGAAATGGATGCG---------------------------GAGGAGCA-----------------------------------------------------------------------------------------C---CAGCG---------------GCTGCGGGAGCAGTTCCAGCAG------------------------------------------------------------------------------------------------CAGTTGG-----------------------------CC---CAGCACC--AGCA-GCA------------------------GT---------------------TCCTGCA---------------------------------GCAGAATC
droEre2	scaffold_4770:13488865-13489015 -		----------------------------------------------------------------------------------------------------------------------------------------------GG-CGGC----GGCGGAGGC--------------------------------------------------------------------------------------------------------------------------------------------------------A------------GTGGCAGTGGCAGTAGCG---------------------------------------------------------GTGGTGGAG---------GCGGT------GGCGGTGGCGGTGG-------------------------------------------------------------------------------------CGGTGGC------------------------------------------------------------------------------------------------------GTTGTCGG----TGGATGTGGC------AGCCACAACGTTGTCGCTGCCA-GTC--ATGACCAGCTC------ACCAATGTTG-----CTGTCATGCA-------------------------------------------------------GCCAACAT

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droGri2

CTCCCGTCCTTCGTCACTCGGCGCAGGATCTCTCAGGGGTTCATTCCATAGTAACTATTTTCGCGGGGTTTGTGTTGGAATTTTTTTGCTCCTGTGCTCGGCAGACAGTGTTGAGTTNNNNNNNNNNNNNNNNNNNNNNNNNAG-GAGG----AGGAGGAGG-------------------------------------------------------------------------------------------------------------------------------------A------------------G------------GACGAGGAGGACGAGGAG---------------------------------------------------------GAGGAGCAG---------GAGGG------CGTGTTATTGGTGGCAACCC------------------------------------------------------------------TGCTTCCGATTGTTTGTTGCAACTTTATCGCCAT------------------------------------------------------------------------------------------------CAGGCGG-----------------------------CC---GATCACT--GGC-CGTAT------GATGATGTTG-----ATGT---------------------TGATGCC---------------------------------GCCGATTT	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
No Reads

droVir3

----------------------------------------------------------------------------------------------------------------------------------------------GA-GGAT---GATGAT---G-------------------------------------------------------------------------------------------------------------------------------------A------------------T------------GATGAGGAGGAGGAGGAA---------------------------------------------------------GAGCTGCTG---------GAGGA------GGAGCTGGAGGAGGAAACACCT----------------A-----------------------------T----------GCCGCTAGATCTCTA----------T--CA-----------------------------------------------------------AAGACCCGCCGTTGCGTCCGC----------------------------------------------------------------------TGACC--CA----C----------AAGCT-------------ATGCC-------------------------------------------------------GCC----A	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................ACACCT----------------A-----------------------------T----------GCCGCTAGAT........................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................GGAT---GATGAT---G-------------------------------------------------------------------------------------------------------------------------------------A------------------T------------GATGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCCGTTGCGTCCGC----------------------------------------------------------------------TGACC--A......................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCCGTTGCGTCCGC----------------------------------------------------------------------TGACC--.......................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGCTAGATCTCTA----------T--CA-----------------------------------------------------------AAGACCCGCC...............................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................GAT---GATGAT---G-------------------------------------------------------------------------------------------------------------------------------------A------------------T------------GATGAGGA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.30	6	0	0	0	0	0	0	0	0	1	2	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................G---------GAGGA------GGAGCTGGAGGA.....................................................................................................................................................................................................................................................................................................................................................................	18	4	0.25	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................GATGAT---G-------------------------------------------------------------------------------------------------------------------------------------A------------------T------------GATGAGGAGG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	7	0.14	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................GAT---G-------------------------------------------------------------------------------------------------------------------------------------A------------------T------------GATGAGGAGGAGGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	8	0.13	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................GATGAT---G-------------------------------------------------------------------------------------------------------------------------------------A------------------T------------GATGAGGAG................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	10	0.10	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................GA-GGAT---GATGAT---G-------------------------------------------------------------------------------------------------------------------------------------A------------------T------------GATGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	15	0.07	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

----------------------------------------------------------------------------------------------------------------------------------------------GA-GCAG---GAGTAGGAGC-------------------------------------------------------------------------------------------------------------------------------------A------------------G------------GAGCAGGAGCAGGAGCAG---------------------------------------------------------GAGCAGGAG---------TTGGA-------GCCATGGC--TA---AAC--------------------------------------------------------------------------------CAGAAC-------------------TGTGCTTCGCTTTTTAGTTTTACAAATTGCTTAATGCCACACCACAGTGCCGCTGTTATGCATTC----------------------------------------------------------------------------------------------------CG-----ACCT---------------------TCCTACC---------------------------------TCCCTTTC	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
..........................................................................................................................................................GTAGGAGC-------------------------------------------------------------------------------------------------------------------------------------A------------------G------------GAGCAGGA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	20	0.05	1	0	0	0	0	1	0

droWil2

----------------------------------------------------------------------------------------------------------------------------------------------AG-GAAG----GGGAAGATG-------------------------------------------------------------------------------------------------------------------------------------G------------------AGATGGAGATGAAGAGGAGGAGGATGGGCCA---------------------------------------------------------GAGCC----------------------------------------------ACAGAATG--------------------------------------------------------------------------G-----------------------------------------C--GGCGATGA-----------------------TATGGAACACCATTTAGATGGCGGCTCTGTTGTTGT----TGATCATCATCATCATCATCATGGCATCATGAATGGTG-TAG--AGGATCAGCAC------GTTGATGATG-----ATGA---------------------------------------------------------------TGACGA	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGAACACCATTTAGATGGCGGCT...................................................................................................................................................................	24	1	1.00	1	0	0	0	1	0
.................................................................................................................................................................................................................................................................................................................................GATGAAGAGGAGGAGGATGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	1	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AG--AGGATCAGCAC------GTTGAT..................................................................................	19	1	1.00	1	0	0	0	1	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G--AGGATCAGCAC------GTTGATGAT...............................................................................	21	1	1.00	1	0	0	0	1	0
...............................................................................................................................................................................................................................................................................................................................................GGATGGGCCA---------------------------------------------------------GAGCC----------------------------------------------ACAGAATG--------------------------------------------------------------------------.........................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAC------GTTGATGATG-----ATGA---------------------------------------------------------------TGAC..	22	1	1.00	1	0	0	0	1	0
.............................................................................................................................................................AGATG-------------------------------------------------------------------------------------------------------------------------------------G------------------AGATGGAGATGAAGAGGA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAC------GTTGATGATG-----ATGA---------------------------------------------------------------TGA...	23	1	1.00	1	0	0	1	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTAGATGGCGGCTCTGTTGTTGT----TGAT.................................................................................................................................................	28	1	1.00	1	0	0	1	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G-TAG--AGGATCAGCAC------GTTGATGAT...............................................................................	24	1	1.00	1	0	0	0	1	0
...........................................................................................................................................................................................................................................................................................................................GATGGAGATGAAGAGGAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCATCATCATCATCATCATG..............................................................................................................................	20	20	0.05	1	0	0	0	0	1

dp5

----------------------------------------------------------------------------------------------------------------------------------------------GA-GATG---GAGGAG-------------------------------------------------------------------------------------------------------------------------------------------------------------------------GACGAGGATGATGCGGCA---------------------------------------------------------AAGATGCAG---------CTCGA--------------------------------------------------------------------------------------------------------------------------------------------------------C--GGTGACCAAGGCAACATCGATGTGACCACGCCGCCCACAC---------------------------CCGGCGA-----------------------------CC---GAGCCCT--AGCCAGCAA------GCGCAAGT-A-----CTGTGATGAG----AACGAGA--------------------------------------------CGAAATTA

Size

Hit Count

Total Norm

Total

M022
Male-body

M040
Female-body

M059
Embryo

M062
Head

V043
Embryo

V051
Head

V112
Male-body

SRR902010
Ovary

SRR902011
Testis

SRR902012
CNS imaginal disc

No Reads

droPer2

----------------------------------------------------------------------------------------------------------------------------------------------AG-GAGG----AGCAGGAGG-------------------------------------------------------------------------------------------------------------------------------------A------------------G------------GAAGAGGAGGAGGAGGAA---------------------------------------------------------GAGGAGGAG---------ACTGA------CGAGATCATTGTCG-------------------------------------------------------------------------------------AAATCGA------------------------------------------------------------------------------------------------------GCCGCCAGCTGGTTT----CCT------A--------CCCTTCGCCTCGG-ACA--ACAGCCAGTCG------GATGATGATG-----ATGA-------------------------------------------------------------TGAGGATG	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GG-ACA--ACAGCCAGTCG------GATGATGATG-----AT.......................................................................	28	1	2.00	2	2	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTT----CCT------A--------CCCTTCGCCTCGG-AC............................................................................................................	23	1	1.00	1	1	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCAGTCG------GATGATGATG-----ATGA-------------------------------------------------------------TGA.....	25	1	1.00	1	1	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................AGAGGAGGAGGAGGAA---------------------------------------------------------GA............................................................................................................................................................................................................................................................................................................................................................................................................	18	6	0.67	4	0	0	0	0	1	3
................................................................................................................................................................................................................................................................................................................................................GAGGAGGAA---------------------------------------------------------GAGGAGGAG---------............................................................................................................................................................................................................................................................................................................................................................................................	18	20	0.60	12	0	1	0	1	0	10
..............................................................................................................................................................GAGG-------------------------------------------------------------------------------------------------------------------------------------A------------------G------------GAAGAGGAGGAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	20	0.60	12	0	1	0	1	0	10
..............................................................................................................................................................GAGG-------------------------------------------------------------------------------------------------------------------------------------A------------------G------------GAAGAGGAGGAGGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.60	12	0	0	0	0	0	12
.......................................................................................................................................................................................................................................................................................................................................GAAGAGGAGGAGGAGGAA---------------------------------------------------------GA............................................................................................................................................................................................................................................................................................................................................................................................................	20	4	0.50	2	0	0	0	0	0	2
..............................................................................................................................................................GAGG-------------------------------------------------------------------------------------------------------------------------------------A------------------G------------GAAGAGGAGGAGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.35	7	0	0	1	0	1	5
.......................................................................................................................................................................................................................................................................................................................................GAAGAGGAGGAGGAGGAA---------------------------------------------------------G.............................................................................................................................................................................................................................................................................................................................................................................................................	19	4	0.25	1	0	0	0	0	0	1
.............................................................................................................................................................................................................................................................................................................................................GAGGAGGAGGAA---------------------------------------------------------GAGGAG........................................................................................................................................................................................................................................................................................................................................................................................................	18	20	0.25	5	0	0	0	0	0	5
........................................................................................................................................................................................................................................................................................................................................AAGAGGAGGAGGAGGAA---------------------------------------------------------G.............................................................................................................................................................................................................................................................................................................................................................................................................	18	5	0.20	1	0	1	0	0	0	0
..............................................................................................................................................................GAGG-------------------------------------------------------------------------------------------------------------------------------------A------------------G------------GAAGAGGAGGAGGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	19	0.16	3	0	0	0	0	0	3
.............................................................................................................................................................................................................................................................................................................................................GAGGAGGAGGAA---------------------------------------------------------GAGGAGG.......................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.15	3	0	0	0	0	0	3
..............................................................................................................................................................GAGG-------------------------------------------------------------------------------------------------------------------------------------A------------------G------------GAAGAGGAGGAGGAGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	16	0.13	2	0	0	0	0	0	2
...............................................................................................................................................................AGG-------------------------------------------------------------------------------------------------------------------------------------A------------------G------------GAAGAGGAGGAGGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.10	2	0	0	0	0	0	2
..........................................................................................................................................................................................................................................................................................................................................GAGGAGGAGGAGGAA---------------------------------------------------------GAGGAGGAG---------............................................................................................................................................................................................................................................................................................................................................................................................	24	11	0.09	1	0	0	0	0	0	1
............................................................................................................................................................AGGAGG-------------------------------------------------------------------------------------------------------------------------------------A------------------G------------GAAGAGGAGGAGGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	16	0.06	1	0	0	0	0	0	1
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATGATG-----ATGA-------------------------------------------------------------TGAGGAT.	18	20	0.05	1	0	0	1	0	0	0
..........................................................................................................................................................................................................................................................................................................................................GAGGAGGAGGAGGAA---------------------------------------------------------GAGGAG........................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	1
.................................................................................................................................................................G-------------------------------------------------------------------------------------------------------------------------------------A------------------G------------GAAGAGGAGGAGGAGG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	1
............................................................................................................................................................AGGAGG-------------------------------------------------------------------------------------------------------------------------------------A------------------G------------GAAGAGGAGGA..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	1	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................GAGGAGGAGGAA---------------------------------------------------------GAGGAGGA......................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	1
..............................................................................................................................................................................................................................................................................................................................................AGGAGGAGGAA---------------------------------------------------------GAGGAGGA......................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	1	0	0	0	0
................................................................................................................................................................GG-------------------------------------------------------------------------------------------------------------------------------------A------------------G------------GAAGAGGAGGAGGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	20	0.05	1	0	0	0	0	0	1
...............................................................................................................................................................AGG-------------------------------------------------------------------------------------------------------------------------------------A------------------G------------GAAGAGGAGGAGGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	1	0	0	0	0

droAna3

----------------------------------------------------------------------------------------------------------------------------------------------AG-GGGG----AGGGGGTAG-------------------------------------------------------------------------------------------------------------------------------------C------------------G------------GTACAGAAGCCACTGGTG---------------------------------------------------------GAGGCGGCG---------GCGGC------AGCGGTGGCAGTGG-------------------------------------------------------------------------------------CAGCGGC------------------------------------------------------------------------------------------------------AGTGTCGC----TGGCTGTGGC------AGTCACAACATTGTCGCCGGCA-GTC--ATGACCAGCTC------GCCAATGTCG-----CTGTCATGCA-------------------------------------------------------TCCAACAT	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACATTGTCGCCGGCA-GTC--A........................................................................................................	21	1	1.00	1	1	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................GTACAGAAGCCACTGGTG---------------------------------------------------------GAGGCGGC......................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTC------GCCAATGTCG-----CTGTCA...................................................................	20	1	1.00	1	1	0	0	0	0	0
..............................................................................................................................................................GTAG-------------------------------------------------------------------------------------------------------------------------------------C------------------G------------GTACAGAAGCCACTGGT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	1
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCGCCGGCA-GTC--ATGACCAGC................................................................................................	23	1	1.00	1	1	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGCCGGCA-GTC--ATGACCAGCT...............................................................................................	23	1	1.00	1	1	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGCCGGCA-GTC--ATGACCAG.................................................................................................	21	1	1.00	1	1	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................GC------AGCGGTGGCAGTGG-------------------------------------------------------------------------------------CAGCGGC------------------------------------------------------------------------------------------------------A................................................................................................................................................................	24	2	0.50	1	1	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................GC------AGCGGTGGCAGTGG-------------------------------------------------------------------------------------CAGC..........................................................................................................................................................................................................................................................................	20	2	0.50	1	0	1	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGGTGGCAGTGG-------------------------------------------------------------------------------------CAGCGGC------------------------------------------------------------------------------------------------------.................................................................................................................................................................	20	2	0.50	1	0	0	0	0	0	1
...............................................................................................................................................................................................................................................................................................................................................................................................................................................AGCGGTGGCAGTGG-------------------------------------------------------------------------------------CAGCGGC------------------------------------------------------------------------------------------------------A................................................................................................................................................................	22	2	0.50	1	0	0	0	0	0	1
...............................................................................................................................................................................................................................................................................................................................................................................................................................................AGCGGTGGCAGTGG-------------------------------------------------------------------------------------CAGC..........................................................................................................................................................................................................................................................................	18	2	0.50	1	1	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................GGTG---------------------------------------------------------GAGGCGGCG---------GCGGC------.................................................................................................................................................................................................................................................................................................................................................................................	18	7	0.14	1	0	0	0	0	0	1

droBip1

----------------------------------------------------------------------------------------------------------------------------------------------AG-GGGT----AGGGGGAGG-------------------------------------------------------------------------------------------------------------------------------------C------------------G------------GTACAGAAGCCAGTGGCG---------------------------------------------------------GAATCGGAG---------GCGGCGGCGGCATCGGTGGCAGTGG-------------------------------------------------------------------------------------CAGCGCC------------------------------------------------------------------------------------------------------AGTGTCGC----TGGCTGTGGC------AGTCACAACATTGTCGCCGGCA-GTC--ATGACCAGCTC------GCCAATGTCG-----CTGTCATGCA-------------------------------------------------------GCCAACAT	Size	Hit Count	Total Norm	Total
No Reads

droKik1

----------------------------------------------------------------------------------------------------------------------------------------------AG-GAGC----AGGAGGAGA-------------------------------------------------------------------------------------------------------------------------------------A------------------G------------GAGAAGGTGCTCAAGGAG---------------------------------------------------------CAGAAGGAG---------GAGAT------GATGATGGG--TG------------------------------------------------------------------ACCAGCCGGCTCTTA----------G--CGAGGAGCAACTACCGCCGGGCATGGCTTTT-GGT-------ATGGGTT--TGCCTC-----------------------------------------------------------TCAACG-----------------------------------------------------------AGGATGAG--------------GATAGCAACAGTGATGCC---------------------------------TCCA-ATG	Size	Hit Count	Total Norm	Total
No Reads

droFic1

----------------------------------------------------------------------------------------------------------------------------------------------CC-CTTGTGCCGG----------------------------------------------------------------TGGTCAATTTTAATGCAAATTCCGACTTCAATTT----GCATTTCTTTGACACACCCGAGGACTCGTCCACCCAAGGGGCCTACAGCGAGGCCAAC------------AGCTTGGACTCCGAGCAG------------------------------GAAGAGGAGGACCAACAGCCTACGCAGCAGCAACAG---------CAGCA-------------------G-------------------------------------------------------------------------------------CAGCAAC------------------------------------------------------------------------------------------------------ATCATCGG----GAGCTGCAG---------------------------------------------------------------------------------GATTGCCTAAGTGC---CATCGAAGCGGATCCCTTGCAGTTGCTGCAGTGCGACGATTT	Size	Hit Count	Total Norm	Total
No Reads

droEle1

----------------------------------------------------------------------------------------------------------------------------------------------AG-GAGG----ACGACGAGG-------------------------------------------------------------------------------------------------------------------------------------A------------------G------------GACGAAGAGGACGAGGAG---------------------------------------------------------GAGGATCAG---------GAGGA------GGCAGT-----------------------------------------------------------------GTCC---CAGCA---------------CCAGCAGCAGCAGCAGCAACAA------------------------------------------------------------------------------------------------CTGGCGG-----------------------------CC---GAGCAAC--AA----C-----------------A---------------ACGG-----------------------------------GCAGCTGCAGCAGCG-GCCGTCGT	Size	Hit Count	Total Norm	Total
No Reads

droRho1

----------------------------------------------------------------------------------------------------------------------------------------------AG-CAGC----AGGAGCAGC----------------------------------------------------------------------------------------------------------------------------------AGGA------------------G------------CAGCAGGACCAGGATCAA---------------------------------------------------------CGGCA----------------------------------------------ACAGGAGGGGAAACAAATTTGCAATATAAATTTATGCGGATTTTTGC--GTCG---CAGCG---------------GCGCCGCCGACGTCGACGTCAT------------------------------------------------------------------------------------------------CGAATCG-----------------------------CG---TAGCC--CAGGCCATGCT------GCTGATGTCG-----ACGTCCC----------------------------------------------------------------AG	Size	Hit Count	Total Norm	Total
No Reads

droBia1

----------------------------------------------------------------------------------------------------------------------------------------------AG-GACG----AGGAGGATG-------------------------------------------------------------------------------------------------------------------------------------A------------------C------------GACGAGGAGGACGAGGAG---------------------------------------------------------GAGGAGGAGGAGCACCAGCAGCA------GCAGCAGCAGCAGCAACAACAG-----------------------------------------------------------------------------CAGCAGCAGCAACAGCAGCAA------------------------------------------------------------------------------------------------CTTGCGG-----------------------------CC---GAGCAGC--AG----C-----------------A---------------GCGA-----------------------------------GCGGCGGCAGCGGCG-GCCGTAGT	Size	Hit Count	Total Norm	Total
No Reads

droTak1

----------------------------------------------------------------------------------------------------------------------------------------------AG-GAGG----AGGACGAGG-------------------------------------------------------------------------------------------------------------------------------------A------------------G------------GATAACGAGGACGAGCAG---------------------------------------------------------GAGCAGCAG---------CTGTA----------------------------------CGGAG----------------------ATGCGGAGG---CCGTTT-CGGTCACCG---------------GCACGGGCAGCGATGGCGGCTT---------------------------------------------------------------------------------------TGT-GACGG----TGGTCAAGG-----------------------------------------------------------CGGATGAC--------------GA---------------------------------------------------CG--AG	Size	Hit Count	Total Norm	Total
No Reads

droEug1

----------------------------------------------------------------------------------------------------------------------------------------------GA-AGAA---GAAGACGAGA-AGG-----AAGAAGACCAAGGCGGAGGAGGAAGGTAGATGTAAGTGCTTCTGTCTCTCAT--ATTTTGTT-CT-TTTCTGTCTTCATTTT----TTGAT----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTCCGATTTTTG----------A--CA-------------------------------------------------------------------------------------------------------------------------------------------------------------------TATGCCTGTGCAGGCA-------------ATACT-------------------------------------------------------ATCTATAT	Size	Hit Count	Total Norm	Total
No Reads

dm3

----------------------------------------------------------------------------------------------------------------------------------------------TC-GGAG---CAGCAG-AT---GCCCTCC--------------------------------------ATC-------GGGCAAACTTTGTTGCAGGATTGGGATGATAGTGCCACGCAATTGCCGGACGAGATCGAA------------------------------------------------GAGCAGGAGGAGGAGGAA---------------------------------------------------------GAGGG----------------------------------------------ACAGGAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGTGATG-----CTGCGCAGCA-------------------------------------------------------GCAGAACG	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
.........................................................................................................................................................................................................................................................AGTGCCACGCAATTGCCGGACGAGAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................GATGATAGTGCCACGCAATTGCCGGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................CGAGATCGAA------------------------------------------------GAGCAGGAGG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................CAAACTTTGTTGCAGGATTGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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......................................................................................................................................................................................................................................................GATAGTGCCACGCAATTGCCGGACGAG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................CGGACGAGATCGAA------------------------------------------------GAGCAGG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................ACGCAATTGCCGGACGAGATC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................GCAATTGCCGGACGAGATCGAA------------------------------------------------G........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................AA------------------------------------------------GAGCAGGAGGAGGAGGA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................AA---------------------------------------------------------GAGGG----------------------------------------------ACAGGAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGTGCGA-----.........................................................................	21	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

----------------------------------------------------------------------------------------------------------------------------------------------CA-GCCGGAGCAGCAG----TTGCCCTCT--------------------------------------ATC-------GGGCAGACTTTGTTGCAGGATTGGGATGATAGTGCCACGCAACTGCCGGACGAGATCGAA------------GAGGA------------------G------------GAGGAGGAGGAGGAGGAA---------------------------------------------------------GAGGG----------------------------------------------ACAGGAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGTG	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
....................................................................................................................................................................................................................................................................................GAA------------GAGGA------------------G------------GAGGAGGAGGAGGAGGAA---------------------------------------------------------..............................................................................................................................................................................................................................................................................................................................................................................................................	27	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0
...................................................................................................................................................................................................................................................................................................GAGGA------------------G------------GAGGAGGAGGAGGAGGAA---------------------------------------------------------..............................................................................................................................................................................................................................................................................................................................................................................................................	24	7	1.14	8	0	1	0	0	0	0	0	0	0	0	0	0	0	7	0	0	0
....................................................................................................................................................................................................................................................................ACTGCCGGACGAGATCGAA------------G............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................ACTTTGTTGCAGGATTGGGAT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................GAGGA------------------G------------GAGGAGGAGGAGGAGGAA---------------------------------------------------------GAG...........................................................................................................................................................................................................................................................................................................................................................................................................	27	3	0.67	2	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0
...................................................................................................................................................................................................................................................................................................GAGGA------------------G------------GAGGAGGAGGAGGAGGAA---------------------------------------------------------G.............................................................................................................................................................................................................................................................................................................................................................................................................	25	5	0.60	3	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0
...................................................................................................................................................................................................................................................................................................GAGGA------------------G------------GAGGAGGAGGAGGAGGAA---------------------------------------------------------GAGG..........................................................................................................................................................................................................................................................................................................................................................................................................	28	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
....................................................................................................................................................................................................................................................................................................AGGA------------------G------------GAGGAGGAGGAGGAGGAA---------------------------------------------------------G.............................................................................................................................................................................................................................................................................................................................................................................................................	24	7	0.14	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
...................................................................................................................................................................................................................................................................................................GAGGA------------------G------------GAGGAGGAGG...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................	16	20	0.10	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................GGA------------------G------------GAGGAGGAGGAGGAGGAA---------------------------------------------------------..............................................................................................................................................................................................................................................................................................................................................................................................................	22	12	0.08	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
......................................................................................................................................................................................................................................................................................A------------GAGGA------------------G------------GAGGAGGAGGAGGA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	14	0.07	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
......................................................................................................................................................................................................................................................................................................GA------------------G------------GAGGAGGAGGAGGAGGAA---------------------------------------------------------..............................................................................................................................................................................................................................................................................................................................................................................................................	21	15	0.07	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
.........................................................................................................................................................................................................................................................................................................................................GGAGGAGGAGGAGGA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	15	20	0.05	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................AGGAGGAGGAGGAGGAA---------------------------------------------------------G.............................................................................................................................................................................................................................................................................................................................................................................................................	18	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
...................................................................................................................................................................................................................................................................................................GAGGA------------------G------------GAGGAGGAGGAGGAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0

droSec2

----------------------------------------------------------------------------------------------------------------------------------------------TCAGCCGGAGCAGCAG----TTGCCCTCC--------------------------------------ATT-------GGGCAGACTTTGTTGCAGGATTGGGATGAAAGTGCCACGCAACTGCCGGACGAGATCGAA------------GAGGA------------------G------------GAGGAGAAGGAGGAGGAA---------------------------------------------------------GAGGG----------------------------------------------ACAGGAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AGTG	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
..............................................................................................................................................................................................................................................................CACGCAACTGCCGGACGA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	1
...............................................................................................................................................................................................................................AGACTTTGTTGCAGGATTGGG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0

droYak3

----------------------------------------------------------------------------------------------------------------------------------------------GG-AGGA--CGAGGAC---G-------------------------------------------------------------------------------------------------------------AGATCGAG------------GAGGA---------------------------------CGACGAGGACGAGGTGATCGACATGGACGACTACGGCAGCGAAATGGATGCG---------------------------GAGGAGCA-----------------------------------------------------------------------------------------C---CAGCG---------------GCTGCGGGAGCAGTTCCAGCAG------------------------------------------------------------------------------------------------CAGTTGG-----------------------------CC---CAGCACC--AGCA-GCA------------------------GT---------------------TCCTGCA---------------------------------GCAGAATC

Size

Hit Count

Total Norm

Total

M026
Head

M043
Female-body

M056
Embryo

V046
Embryo

V052
Head

V058
Head

V120
Male-body

SRR1275488
Male larvae

SRR1275486
Male prepupae

SRR1275484
Male prepupae

GSM1528802
follicle cells

No Reads

droEre2

----------------------------------------------------------------------------------------------------------------------------------------------GG-CGGC----GGCGGAGGC--------------------------------------------------------------------------------------------------------------------------------------------------------A------------GTGGCAGTGGCAGTAGCG---------------------------------------------------------GTGGTGGAG---------GCGGT------GGCGGTGGCGGTGG-------------------------------------------------------------------------------------CGGTGGC------------------------------------------------------------------------------------------------------GTTGTCGG----TGGATGTGGC------AGCCACAACGTTGTCGCTGCCA-GTC--ATGACCAGCTC------ACCAATGTTG-----CTGTCATGCA-------------------------------------------------------GCCAACAT	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGTTGTCGCTGCCA-GTC--.........................................................................................................	18	1	1.00	1	1	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................GTAGCG---------------------------------------------------------GTGGTGGAG---------GCGGT------.................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................GGCGGTGGCGGTGG-------------------------------------------------------------------------------------CGGTGGC------------------------------------------------------------------------------------------------------.................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	1	0

dgr_103

scaffold_14822:346938-347135 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads