dgr_102

Name	Class	Family	Strand
TART_DV	LINE	Jockey	-

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------################################################## GGTTGGTTGTGGTGGTGCAGCTGCAATTCACCACATGCTAAGATTAAAAGCTCCACCGTCAACACAACTGTTAAGCACCAACAACAGCAACAACAACAGTAACTACACTAACAGCAGCCACATTAACAGCATCATCAGCAGCAGCTTTAACAGCAGCAGCAGCTGTAATAATAACAAAAAAACATTGCTATCGTCATCTAGCGGCATTTCGCAAGAGACCCTCAACCAGAGCGTTGGATCGTCGCGCGCGA ************************************************.................(((((((................................................)))))))......((((.((.(((........))).)).))))....................................************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M041 female body	V109 male body
................................................................................................................................................................................................................................ACCAGAGCGTTGGATCGTCGCG.....	22	0	1	2.00	2	0	2
.......................................................................................................................................................................................................AGCGGCATTTCGCAAGAGACCCTCAAC.........................	27	0	1	1.00	1	1	0
..........................................................................................................................................................................ATAACAAAAAAACATTGCTATCGTCATC.....................................................	28	0	1	1.00	1	1	0
................................................................................ACAACAGCAACAACAAAAGTCACT...................................................................................................................................................	24	2	12	0.08	1	1	0

CCAACCAACACCACCACGTCGACGTTAAGTGGTGTACGATTCTAATTTTCGAGGTGGCAGTTGTGTTGACAATTCGTGGTTGTTGTCGTTGTTGTTGTCATTGATGTGATTGTCGTCGGTGTAATTGTCGTAGTAGTCGTCGTCGAAATTGTCGTCGTCGTCGACATTATTATTGTTTTTTTGTAACGATAGCAGTAGATCGCCGTAAAGCGTTCTCTGGGAGTTGGTCTCGCAACCTAGCAGCGCGCGCT ************************************************.................(((((((................................................)))))))......((((.((.(((........))).)).))))....................................************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M041 female body
.........................................................................................................................................................................................................................TGGGAGTTGGTATAGCGACCTAGC..........	24	3	1	1.00	1	1

Species	Coordinate	ID	Alignment
droGri2	scaffold_14822:290268-290518 -	dgr_102	GG-----------------------------TTGGTTGTGGTGGTGCAGCTGCAA---TTCACCACATGCTAA---------------------------------GATTAAAAGCT---------------------------CCACCGTCA------------------------------------------------------ACACAACTGTTAA-----------------------------------------------GC---------------------------------------------------ACCAACAACAGCAACAACA---ACAGTAACTACA---CTAA------C------------AGCA---------------------GCCA---C---ATTAACAGCATCA------------------------------------------------------------------TCAGCAGCAGCTTTA---------------A---CAGCAG-----------CAGCA---------------G---CTG---------TAATAATAACAAA------------AAA-ACA--------------------TTGC------TATCG------------------------------------------TCATCTAGCGGCATTTC-------------------GCAAGAGACCCTCAACCAGAGCGTTG---GATCGT----------------------------------------------------------CGCGCG-CGA--
droVir3	scaffold_13052:588233-588435 +		AG-----------------------------CTAGTAGTGCAAGTGCAT---TCA---------ATGTGTCAA---------------------------------GAATTAAAGCT---------------------------CCTTCG------------------------------------------------------------CACCTTTTGA-----------------------------------------------GC------AC------------------------------------------TAACAGCAGCAG---------------TGGG-----------------------------------------------------------------------------------------------CGCTCGCAG----------TTAGAGGGCCCCTTTCAGAAGGTAAC--------------------------------------------------------------------------------TCA---------AAAAAATAATAAT------------CAA-ACG--------------------TTGC------TATCA------------------------------------------TCGTCTAGTGGTATTTC-------------------GCAAGAAACACTGAGCCAAAGTGTCG---GATCAT----------------------------------------------------------CGCGAG-CTA--
droMoj3	scaffold_6498:1587034-1587272 -		TG-----------------------------CTGGTGCTTGTAATC---------------------TATCAA---------------------------------GAATTAAAGCT---------------------------TCTGCG------------------------------------------------------------CACCTTTTAA-------------------------------------GCA-------CC---------------------------------------------------AGCACAAACAC---CAACA---ACAACAGCAATA---ACAG------C------------A------------------------GCAA---A---ATCAACAAAAGT-----------------TGCTCGAAC----------ATTGACCGATCATTTCAAAAGGTAAA---------------CA---------------CGCA--------------------------------------------TAA---------AAGTAATAATAAT------------CAA-TCG--------------------TTGC------TATCG------------------------------------------TCGTCTAGTGGCATTTC-------------------GCAAGAGACTCTTAATCAAAGTGTTGGTGGATCAT----------------------------------------------------------CGCGTG-CGA--
droWil2	scf2_1100000004943:581300-581510 -		AACAAG-------------------------CTAGCT--GCTGCT---GTTGGCAGTG---TCGACTTGAAAA---------------------------------TGGTGAAAGCT---------------------------ACGTCG------------------------------------------------------------CACCTGTGCA-----------------------------------------------GC---------------------------------------------------AGCAGTAGCGG------------------------------------------------------------------------------------------------------------------TGCACGAACAGGAGCATCATTAGATGCCCAGTTTCAAAAGGTAAT--------------------------------------------------------------------------------CC------------ATTGTAATAAT------------CAA-ACG--------------------TTGC------TATTG------------------------------------------TCATCTAGTGGCGTGTC-------------------GCAAGAAACATTGAACCAAAGTATTG---GATCTT----------------------------------------------------------CGAGGG-CGA--
dp5	XL_group3a:878416-878633 +		GG-----------------------------TCGCCGGTGATGCTT---------------------CACCAG-------CACCAGCAGCAT-----------------------------------------------------------------------------------------------CAGCAGCAGCAGCCCCACCAGCAGCAGT-----CC-CACCAGCAACAGCAGCAGCAGCAACACCAC-----C---AG--C--AGCAGCAG------------------------------------------------------------------------------------------C------------A------------------------GCAA---C---AGCAG------CAGCAGCAGCACCTCC----------------------------------A-----------------CCAGCAGCAGCAGCA------------CCAA---CAGC-----------AGCAGCAACAGTTCGCCCAGCAG---CAG---------CAGCAGCAGCAA-----------------------CAGCA--------------------------------------------------------------------------------------------------------------------------------G-----CAGCAG----------------------------------------------------------CATCCG-CAC--
droPer2	scaffold_5:2590875-2591083 +		TA-----------------------------TCGATTGTAATG-CGCAGTCA------------TCAAATTAT---------------------------------GTTTG------------------------------------------------------AACA--------------------------------------GCACGACCGCCAAG-------------------------------C-----CAGG----------------------------------------------------------AGCAACAATAGCAACAGCAACAGCAGCAGCAACA---ACAG------C------------A------------------------GCAA---C---AGCAACAACAACA------------------------------------------------------------------GCAGCAGCAGCAACA---------------A---CAGC-----------TAC-----------GTGCA---A---CAA---------CAACTACAACAAC------------AA--------TAGCT------------T---------TATCA------------------------------------------CCATT-GAATACCCCC----------------A------TTGCGCCTCCAATCAGA----------------------------------------------------------------------------------G--
droAna3	scaffold_13337:8965727-8965970 -		GG-----------------------------TGAATCGCTGTGGAGCAG--------------------------------------------------------------------TAGCGAA---------------GCGC-------------AGCAGTTCCAGCAGCAGC--------AGCAACAACAGCAGCAGGCCCAA-----------------------------------------------------CA-------GC---------------------------------------------------AGCAGCAACAG---CAACA---CCACCACCAC---------------CAGC------------------------------------AA---C---AACAACAGC------------------TC------------------------------------------------CAGCAGCAGCAGCAGCA---------------A---CAGGCG-----------CAGCA---------------G---CAG---------CAGCAACAGCAGC--------------AC---CATCACCACCACCAGCAACA---------------GGCACAGAC--------------GGCGCAG----------------------------------------------------GCTCA--------------------------CCACCACCAGATGCGGCGGACACCGTCG--------------------------------CCCC-TGA--
droBip1	scf7180000396567:686494-686704 -		GT-----------------------------GGGGCAGCTGTAGAT--G---------------CTATATCCA---------------------------------G-------------CCAT---------------G------------------------------------------------------------------------------------------------------------------------------------------------------AGCTGCACGTCGAGGCCAGCAGTCAGCAGCAACAACAACAG---CAACA---GCAGCAGCAACA---ACAA------C------------A------------------------GCAG---C---AGCAACAACA------------------------------------------------------------------------------GCAGCA---------------A---CAAC--AGC------AACAACA---------------A---CAA---------CAGCAGCAACATA------------CT----------------------------------------CGGACCCAAACCACACCCATTCCTGCCCAGCAGCAGCA-------------------------------------------CTACACCCACGATCACA-----------------------------------------------------------------------------GT----GT
droKik1	scf7180000302698:120038-120261 +		CA-----------------------------ACAGCAACTTCAAC-----------------------------------------------------------------------------------------------------------------------------------------------AACAGCAGCAAATTCAA-----------------------------------------------------CA-------AC---------------------------------------------------AGCAGAAAAAT---CAACA---ACAGCAGCAA---------------CATCAACAAGAGCA---ACTTCAACAACA---------GCAA---C---TTC---------------------------------------------------------------------------AACAACAGCAGCA------------------A---CATC--------------------------------------AA---------CAGCACCAACAA-----------------------CTTCAACAAC---------------------ATCAACCCAA--------------GTCACAG------------C----------------------------------------CCGA--------------------------CCAGCGACAATTGCAAAAGAT--CATCACCCTGAAGGATCAGGTCATTGGAGCTTTGA--CCAG-CGA--
droFic1	scf7180000453800:277506-277731 +		CA-----------------------------GCTGCACAGAT-------------------------------------------------------------------------------------------------ACGC-------------AC-------CACAGCAGC--------AGC---------------------------------------------------AGCAACAGCAACACATTCTACTGA-------GC---------------------------------------------------AGCAGCAACAG---------------------------CAGCAGCAACAGC------------------------------------AA---G---CACAGCAGC------------------AA------------------------------------------------CAGCAACAGCAGCAGCA---------------G---C------------------------------CCAGCAG---CAG---------CAGCAGCAGTTG-----------------------TGTCAGTT------------G------CAACA------------------------------------------TCCG-TTGCTGCGGTTTCGACTAGCGGCGGCAGCTTGCCGGACAGTCCCG-CCCACGAATCG---CACTCG----------------------------------------------------------CACGAGTCGA--
droEle1	scf7180000491280:3828872-3829105 +		GC----------------------------AGCAGCAATACCACT---TCAAGTGAAG---TTGCCACAACAGAGTCTAA-----------------------------------------------------------------CGTCG------------------------------------------------CACCCAA-----------------------------------------------------CA-------GC---------------------------------------------------AGCAGCAACAG---CAACG---GCAGCAGCAATCCCAATCC------C------------AGTA---------------------GCAA---C---ACCACCACCA---------------------------------------------------------------------GCAGCAGCAGCAGCA------------ACAA---CAAC--------------------------------------------------AATAGCAACAGCC----AGGCCAC--AA---CAACAG--------------CACC------TGTTG------------------------------------------CCAGCACGAGTCATGAT-------------------GCGAAAGCAGCCCAGC-GAGACGCTG---AGTCAG----------------------------------------------------------CTACTG-GCA--
droRho1	scf7180000779334:988755-988974 -		GC----------------------------AGCAGCAACAGCAGC---------------------------------------------A------------------------------------------------------------------------------------------------CAACAGCAGCAGCCACAG-----------------------------------------------------CA-------GC---------------------------------------------------AGCAGCAACTG---CAACT---GCAGCAGCAA---------------CAGC------------------------------------AA---C---TGCAACAGCAACA------------------------------------------------------------------GCAACTGCAGCAGCA---------------A---CAGC-----------AACTGCA---------------G---CAG---------CAACAGCAACACCA------------G--------GAGCT------------C---------TACCG------------------------------------------CCAGCAGCAGCAACATC-------------------GCACTAGCAT-------GAGTGGCAT---AGCCAGCCAGCAGCACTTGCAACAGAT--GGACGCA------------------------------CAGT-ACA--
droBia1	scf7180000302292:308245-308468 -		TG-----------------------------GTAACGGCAGCACC---ATTGGCA---------------------------------ACAC-------------------------C------AGCAACACTAGACAG--------------------------AACA--------------------------------------GCAGCAAC---------------------------ATC---AG--GCCGCACA-------GC---------------------------------------------------AGCAACAACAG---CAACA---GCAGCAGCAACT---------------------------------------CCAGCAACTCTAGCAA---C---AGCAG------CAACACTAGCCCTCCCCA-------------------CAGCAAC-----------------------ACCAGTAGCAGCA---------------GCCAC-----------------A---------------------A---CAA---------CAACAACAACAAT------------CA--------CAGCA---------------G------CAACA------------------------------------------TCATC-AGCGGCTTCT----------------G------C--------------------------AGCAC----------------------------------------------------------CATTTG----GC
droTak1	scf7180000415210:158026-158271 +		TT-----------------------------GACGCACCTACCGCA--T-------------------AGTCA--------------------------------------------TATGCAT---------------ACACACCATCACCAACATGCGGCAGCCGTTGCAGCGGTCTATCA------------------------------T---------------------------------C---TC-----CAGCA----GC---------------------------------------------------AACAGCAGCAG---CAGCA---GCAGCAGCAGCT------GCAACAGC------------A------------------------GCAA---C---TGCAACAGCAGCAAC---------------------------------------------------------------AGCAACAGCAGCA---------------ACTGC-----------------A---------------------G---CAG---------CAGCAACAGCGGG------------CGA-ACG--------------------ATGCGAACAGCGCTG-----------------CA-----------------------ACAACTGGCGGCGATTC-------------------GGAGGCAACAGC----------GAC-----GGCAC----------------------------------------------------------CGCCCG-C-T--
droEug1	scf7180000407691:102113-102315 +		GTCT-GATGCCCGGTGCTGGGGCAAGTGTTAACAATAATAAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCCAACACCAC-----C---AA--C--AACAACAA---------------------------------------------------TAA---CAACA---GCAGTAGCAACA---ACAACAACAAC------------A---ACAATAAT---------------AA---T---ACCAAA------------------------------------------------------ATGCAGGCAATGATCTGCAACAAAAGCAGCA------------------A---CAGC--------------------------------------AACAGCACCAACAACAACAACAGCAGCAG----C--TCA-TCC--------------------TCCT------CATCA------------------------------------------TCAT--------------------------------------------------------------------------------------------------------------------------------CCT----GC
dm3	chrX:12625102-12625314 -		CG-----------G-----------------TGCGCAACAGCAGC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACAACAACACCAT-----C---AG--C--AGCAGCAGCAACATCATCAGCAGCAACGTGTTGTTGCCAGCAGCAAC------------------------------CAGCAA---------------CAGC---------A------------------------A------C---AACAACAAC------------------TA------------------------------------------------CAGCAACAGCAGCAGCA---------------G---CAGC-----------------A---------------GCAACAA---------CAGCAGCAGCAGC--------------------AGCAGCAGCAGCATGATAA---------------TGGACCAAC--------------GTCCCATCATTTGCATCAATCATCTATCAGCATCTC----------------------------------------------------------------------------------------------------------------------------
droSim2	x:11980705-11980928 -		GG-----------------------------TGCGCAGCAGCAGCA--G-------------------------------------------------------------------------------------------------------------------------CAG--------------------------------------------------------------------CAACAACACCAT-----C---AGCA-GCAGCAGCAGCAGCATCATCAGCAGCAACGTGTTGTTGCCAGCAGCAAC------------------------------CAGCAA---------------CAGC---------A------------------------G------C---AACAGCAGC------------------TG------------------------------------------------CAGCAACAGCAGCAGCAGCAACAACAGCAGCAG--------------------------------------------CAG---------CAGCAGCAGCAG--------------------CAGCAGCAGCAGCATGATAA---------------TGGACCAAC--------------GTCCCATCATTTGCATCAATCATCTATCAGCATCTC----------------------------------------------------------------------------------------------------------------------------
droSec2	scaffold_1:5083436-5083656 -		CA-----------------------------ACAACAACGGCAACA--A---------------------------TCACAATCCGAGCTTACAACTGAATGGTAATGGTAG-----C------AGCAACACGAGGCAA--------------------------CACAGCAGC--------GGC------------------AG---------------------------------CAACAGC---AG--ACAACAC----------------------------------------------------------------------------AGCA---GCAGCAGCAG---------------CAGCAGCAGCAGTA---ACA------------------GCAA---C---AGCAG------CAACATAAGCCCTCCC----------------------------------C-----------------CCAGCAGCAGCA---------------GCCGC-----------------A---------------------G---CAA---------CAACAACAATAAT------------CA--------CAGCG---------------G------CAACA------------------------------------------TCAT-TAGCGGCTTTT-----------------------------------------------------------------------------------------------------------------------------
droYak3	2R:17621753-17621955 +		TG-----------------------------GTG-CAACAGTCGCA--------G---TTC----TACAT-----------------------------------------------CAACCAC---------------AATC-------------AGCAGTACCCACAGCAGC-----AACA------------------------------T---------------------------------C---AC-----CAGCAGCA-GC------------------------------------------------------AACATCAC---CAGCA---GCAGCAGCATCA------ACAACAGC------------A------------------------TCAGTATCAGCATCAGCAGC---------------------------------------------------------------------AGCATCAGCAGCAGCA---------------GCAACAGCAG-----------CATCA---------------G---CAG---------CAGCATCAGCAGA---------CAC--AA---CAGCAGCATCAAC---------------------A---------------------------------------------T-----------------------------------------------------------------------------------------------------------------------------CAACAG-GCA--
droEre2	scaffold_4690:16107979-16108216 +		AA-----------------------------ATAGCCGCTGTTGTG--G---------------------------CCGCCGCCATGGCCACCAGC--AATGGCAAT-------CCC---------------------------ACAC---------------------------------------CGACA---------------GCAGCAAT-----CCCCGCCAGCAGC---AGCAGCAGCAACACA--TTGCCC-------------------------------------------------------------------------------------AGTAGCAACA---ATAG------C---------------------------------------AG---T---TGC---------------------------------------------------------------------------CACAACAGCAGCAGCG---------------G---CAGC--GGCAGCAGCA---------------------G---CAA---------CTGCAACAGCAAC------------CAA-GTG--------------------CCAA-------------------TACAAGTGCCAATCCT-----------------------GAGCGGATCGCC-------------------GGGATCCACAT------------------CGTCAGCCAGTCA-----------------------------------------------------CATT----CC

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droGri2

GG-----------------------------TTGGTTGTGGTGGTGCAGCTGCAA---TTCACCACATGCTAA---------------------------------GATTAAAAGCT---------------------------CCACCGTCA------------------------------------------------------ACACAACTGTTAA-----------------------------------------------GC---------------------------------------------------ACCAACAACAGCAACAACA---ACAGTAACTACA---CTAA------C------------AGCA---------------------GCCA---C---ATTAACAGCATCA------------------------------------------------------------------TCAGCAGCAGCTTTA---------------A---CAGCAG-----------CAGCA---------------G---CTG---------TAATAATAACAAA------------AAA-ACA--------------------TTGC------TATCG------------------------------------------TCATCTAGCGGCATTTC-------------------GCAAGAGACCCTCAACCAGAGCGTTG---GATCGT----------------------------------------------------------CGCGCG-CGA--	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCAGAGCGTTG---GATCGT----------------------------------------------------------CGCG........	22	1	2.00	2	0	2
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCGGCATTTC-------------------GCAAGAGACCCTCAAC.........................................................................................	27	1	1.00	1	1	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAACAAA------------AAA-ACA--------------------TTGC------TATCG------------------------------------------TCATC........................................................................................................................................	28	1	1.00	1	1	0

droVir3

AG-----------------------------CTAGTAGTGCAAGTGCAT---TCA---------ATGTGTCAA---------------------------------GAATTAAAGCT---------------------------CCTTCG------------------------------------------------------------CACCTTTTGA-----------------------------------------------GC------AC------------------------------------------TAACAGCAGCAG---------------TGGG-----------------------------------------------------------------------------------------------CGCTCGCAG----------TTAGAGGGCCCCTTTCAGAAGGTAAC--------------------------------------------------------------------------------TCA---------AAAAAATAATAAT------------CAA-ACG--------------------TTGC------TATCA------------------------------------------TCGTCTAGTGGTATTTC-------------------GCAAGAAACACTGAGCCAAAGTGTCG---GATCAT----------------------------------------------------------CGCGAG-CTA--	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
......................................................................................................................................................................................................................................................................................................................................AGCAG---------------TGGG-----------------------------------------------------------------------------------------------CGCTCGCAG----------TTA.............................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCCAAAGTGTCG---GATCAT----------------------------------------------------------............	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................TGGG-----------------------------------------------------------------------------------------------CGCTCGCAG----------TTAGAGGG........................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCA------------------------------------------TCGTCTAGTGGTATTTC-------------------.........................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCAG----------TTAGAGGGCCCCTTTCA...............................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

TG-----------------------------CTGGTGCTTGTAATC---------------------TATCAA---------------------------------GAATTAAAGCT---------------------------TCTGCG------------------------------------------------------------CACCTTTTAA-------------------------------------GCA-------CC---------------------------------------------------AGCACAAACAC---CAACA---ACAACAGCAATA---ACAG------C------------A------------------------GCAA---A---ATCAACAAAAGT-----------------TGCTCGAAC----------ATTGACCGATCATTTCAAAAGGTAAA---------------CA---------------CGCA--------------------------------------------TAA---------AAGTAATAATAAT------------CAA-TCG--------------------TTGC------TATCG------------------------------------------TCGTCTAGTGGCATTTC-------------------GCAAGAGACTCTTAATCAAAGTGTTGGTGGATCAT----------------------------------------------------------CGCGTG-CGA--	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
No Reads

droWil2

AACAAG-------------------------CTAGCT--GCTGCT---GTTGGCAGTG---TCGACTTGAAAA---------------------------------TGGTGAAAGCT---------------------------ACGTCG------------------------------------------------------------CACCTGTGCA-----------------------------------------------GC---------------------------------------------------AGCAGTAGCGG------------------------------------------------------------------------------------------------------------------TGCACGAACAGGAGCATCATTAGATGCCCAGTTTCAAAAGGTAAT--------------------------------------------------------------------------------CC------------ATTGTAATAAT------------CAA-ACG--------------------TTGC------TATTG------------------------------------------TCATCTAGTGGCGTGTC-------------------GCAAGAAACATTGAACCAAAGTATTG---GATCTT----------------------------------------------------------CGAGGG-CGA--	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGTATTG---GATCTT----------------------------------------------------------CGAGGG-C....	22	1	1.00	1	0	0	0	1	0

dp5

GG-----------------------------TCGCCGGTGATGCTT---------------------CACCAG-------CACCAGCAGCAT-----------------------------------------------------------------------------------------------CAGCAGCAGCAGCCCCACCAGCAGCAGT-----CC-CACCAGCAACAGCAGCAGCAGCAACACCAC-----C---AG--C--AGCAGCAG------------------------------------------------------------------------------------------C------------A------------------------GCAA---C---AGCAG------CAGCAGCAGCACCTCC----------------------------------A-----------------CCAGCAGCAGCAGCA------------CCAA---CAGC-----------AGCAGCAACAGTTCGCCCAGCAG---CAG---------CAGCAGCAGCAA-----------------------CAGCA--------------------------------------------------------------------------------------------------------------------------------G-----CAGCAG----------------------------------------------------------CATCCG-CAC--	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AA-----------------------CAGCA--------------------------------------------------------------------------------------------------------------------------------G-----CAGCAG----------------------------------------------------------CATCCG-C....	21	2	0.50	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAA-----------------------CAGCA--------------------------------------------------------------------------------------------------------------------------------G-----CAGCAG----------------------------------------------------------CATCCG-C....	22	2	0.50	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAA-----------------------CAGCA--------------------------------------------------------------------------------------------------------------------------------G-----CAGCAG----------------------------------------------------------CATCCG-.....	21	3	0.33	1	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAGCACCTCC----------------------------------A-----------------CC...............................................................................................................................................................................................................................................................................................................................................	18	5	0.20	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................GCAGCAGCAACACCAC-----C---AG--C--A..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	5	0.20	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................CAGCAG------------------------------------------------------------------------------------------C------------A------------------------GCAA---C---AGCAG------CAGCA................................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.15	3	0	2	0	0	1	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGCAGCAA-----------------------CAGCA--------------------------------------------------------------------------------------------------------------------------------G-----CAGCA.......................................................................	23	20	0.15	3	0	2	0	0	1	0	0	0	0	0
.....................................................................................................................................................................................................................................................AACACCAC-----C---AG--C--AGCAGCAG------------------------------------------------------------------------------------------C------------A------------------------...........................................................................................................................................................................................................................................................................................................................................................................................................................................	22	7	0.14	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................ACCAC-----C---AG--C--AGCAGCAG------------------------------------------------------------------------------------------C------------A------------------------G..........................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.10	2	0	0	0	0	0	0	0	2	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCA--------------------------------------------------------------------------------------------------------------------------------G-----CAGCAG----------------------------------------------------------CATCCG-C....	19	10	0.10	1	0	1	0	0	0	0	0	0	0	0
......................................................................CAG-------CACCAGCAGCAT-----------------------------------------------------------------------------------------------CAG..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	11	0.09	1	0	1	0	0	0	0	0	0	0	0
..................................................................................CCAGCAGCAT-----------------------------------------------------------------------------------------------CAGCAGCAGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	14	0.07	1	0	0	0	0	0	0	0	0	1	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAGCAGCA------------CCAA---CAGC-----------A...............................................................................................................................................................................................................................................................................................	21	14	0.07	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCA------------CCAA---CAGC-----------AGC.............................................................................................................................................................................................................................................................................................	18	16	0.06	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................AG--C--AGCAGCAG------------------------------------------------------------------------------------------C------------A------------------------GCAA---C---AGC.............................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................CAGCAACAGCAGCAGCAGCAAC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	1	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................C----------------------------------A-----------------CCAGCAGCAGCAGCA------------CC....................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................CACCAGCAACAGCAGCAGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	1	0	0	0	0	0
.................................................................................................................................................................................................................................CCAGCAACAGCAGCAGCAGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	1	0	0	0	0	0
...............................................................................................................................................................................................................................CACCAGCAACAGCAGCAGCAG............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................CCAC-----C---AG--C--AGCAGCAG------------------------------------------------------------------------------------------C------------A------------------------G..........................................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G---------CAGCAGCAGCAA-----------------------CAGCA--------------------------------------------------------------------------------------------------------------------------------G-----CA..........................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	1
......................................................................................................................................................................................................................................................................................................................................................................................................................CAA---C---AGCAG------CAGCAGCAGC...........................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	1	0	0	0	0	0
........................................................................................................................................................................................................................................CAGCAGCAGCAGCAACACC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	1	0	0	0	0	0

droPer2

TA-----------------------------TCGATTGTAATG-CGCAGTCA------------TCAAATTAT---------------------------------GTTTG------------------------------------------------------AACA--------------------------------------GCACGACCGCCAAG-------------------------------C-----CAGG----------------------------------------------------------AGCAACAATAGCAACAGCAACAGCAGCAGCAACA---ACAG------C------------A------------------------GCAA---C---AGCAACAACAACA------------------------------------------------------------------GCAGCAGCAGCAACA---------------A---CAGC-----------TAC-----------GTGCA---A---CAA---------CAACTACAACAAC------------AA--------TAGCT------------T---------TATCA------------------------------------------CCATT-GAATACCCCC----------------A------TTGCGCCTCCAATCAGA----------------------------------------------------------------------------------G--	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
........................................................................................................................................................................................................................................................................................................................................................................G------C------------A------------------------GCAA---C---AGCAACAACAACA------------------------------------------------------------------GCA..............................................................................................................................................................................................................................................................................................................................................	24	17	0.06	1	0	1	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................C---AGCAACAACAACA------------------------------------------------------------------GCAGC............................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	1	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACAACA------------------------------------------------------------------GCAGCAGCAGCA.....................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	1	0	0
.........................................................................................................................................................................................................................................................................................................................................AGCAACAGCAACAGCAGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	20	0.05	1	0	1	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................CAACA---ACAG------C------------A------------------------GCAA---C---AGCA............................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	1	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACAACA------------------------------------------------------------------GCAGCAGCAG.......................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	1	0	0	0
...........................................................................................................................................................................................................................................................................................................................................CAACAGCAACAGCAGCAGCA.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	1	0	0	0	0

droAna3

GG-----------------------------TGAATCGCTGTGGAGCAG--------------------------------------------------------------------TAGCGAA---------------GCGC-------------AGCAGTTCCAGCAGCAGC--------AGCAACAACAGCAGCAGGCCCAA-----------------------------------------------------CA-------GC---------------------------------------------------AGCAGCAACAG---CAACA---CCACCACCAC---------------CAGC------------------------------------AA---C---AACAACAGC------------------TC------------------------------------------------CAGCAGCAGCAGCAGCA---------------A---CAGGCG-----------CAGCA---------------G---CAG---------CAGCAACAGCAGC--------------AC---CATCACCACCACCAGCAACA---------------GGCACAGAC--------------GGCGCAG----------------------------------------------------GCTCA--------------------------CCACCACCAGATGCGGCGGACACCGTCG--------------------------------CCCC-TGA--	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCACAGAC--------------GGCGCAG----------------------------------------------------GCT..................................................................................................	19	1	3.00	3	0	0	0	0	0	3
.G-----------------------------TGAATCGCTGTGGAGCAG--------------------------------------------------------------------TAGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	2.00	2	1	0	0	0	1	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAGCAACA---------------GGCACAGAC--------------GGC.............................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0
.......................................TGTGGAGCAG--------------------------------------------------------------------TAGCGAA---------------GC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	1	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACA---------------GGCACAGAC--------------GGCGCA..........................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	1
........................................................................................................................................................................................CAACAACAGCAGCAGGCCCAA-----------------------------------------------------C.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................C------------------------------------AA---C---AACAACAGC------------------TC------------------------------------------------CAGCAGCAGCAGT......................................................................................................................................................................................................................................................................................................................................	28	1	1.00	1	1	0	0	0	0	0
................................................G--------------------------------------------------------------------TAGCGAA---------------GCGC-------------AGCAGTTCCA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAG----------------------------------------------------GCTCA--------------------------CCACCACCAGATGCGGC.....................................................	26	1	1.00	1	1	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACA---------------GGCACAGAC--------------GGCGT...........................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0
GG-----------------------------TGAATCGCTGTGGAGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	1
........................................GTGGAGCAG--------------------------------------------------------------------TAGCGAA---------------GCGC-------------AGC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	1
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACAGCAGC--------------AC---CATCACCAC.................................................................................................................................................................................................................	22	2	0.50	1	0	1	0	0	0	0
..................................................................................................................................................................TCCAGCAGCAGC--------AGCAACAAC.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	2	0.50	1	0	1	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................CAACA---CCACCACCAC---------------CAGC------------------------------------AA---C---AAC.............................................................................................................................................................................................................................................................................................................................................................................................................................	25	2	0.50	1	0	1	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAGCAGCA---------------A---CAGGCG-----------CAGC..........................................................................................................................................................................................................................................................................................	24	2	0.50	1	0	0	0	0	0	1
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G---------CAGCAACAGCAGC--------------AC---CATCAC....................................................................................................................................................................................................................	22	2	0.50	1	0	1	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................G---CAACA---CCACCACCAC---------------CAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	3	0.33	1	1	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCA---------------A---CAGGCG-----------CAGCA---------------G---CA....................................................................................................................................................................................................................................................................	21	3	0.33	1	0	1	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAACAGCAGC--------------AC---CAT.......................................................................................................................................................................................................................	18	4	0.25	1	0	0	0	1	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAGCAGCA---------------A---CAGGCG-----------CA............................................................................................................................................................................................................................................................................................	21	4	0.25	1	0	1	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CA---------------G---CAG---------CAGCAACAGCAGC--------------AC---CA........................................................................................................................................................................................................................	23	6	0.17	1	0	1	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAGCAGCA---------------A---CAGGCG-----------..............................................................................................................................................................................................................................................................................................	20	6	0.17	1	0	0	0	0	0	1
...........................................................................................................................................................................AGC--------AGCAACAACAGCAGCAGGC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	6	0.17	1	0	1	0	0	0	0
...........................................................................................................................................................................................................AA-----------------------------------------------------CA-------GC---------------------------------------------------AGCAGCAACAG---CAACA---..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.15	3	1	0	0	0	0	2
................................................................................................................................................................................................................................................................................................................................AGCAGCAACAG---CAACA---CCACCG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	7	0.14	1	1	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAGCAGCA---------------A---CAGGCG-----------..............................................................................................................................................................................................................................................................................................	19	8	0.13	1	1	0	0	0	0	0
............................................................................................................................................................................GC--------AGCAACAACAGCAGCAGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	8	0.13	1	0	1	0	0	0	0
......................................................................................................................................................................................AGCAACAACAGCAGCAGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	9	0.11	1	0	0	0	0	0	1
.............................................................................................................................................................................C--------AGCAACAACAGCAGCAGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	9	0.11	1	0	1	0	0	0	0
....................................................................................................................................................................CAGCAGCAGC--------AGCAACAACAGC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.10	2	2	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAGCAGCA---------------A---CAGGC..........................................................................................................................................................................................................................................................................................................	18	19	0.05	1	0	1	0	0	0	0
...........................................................................................................................................................................................................AA-----------------------------------------------------CA-------GC---------------------------------------------------AGCAGCAACAG---CAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	1

droBip1

GT-----------------------------GGGGCAGCTGTAGAT--G---------------CTATATCCA---------------------------------G-------------CCAT---------------G------------------------------------------------------------------------------------------------------------------------------------------------------AGCTGCACGTCGAGGCCAGCAGTCAGCAGCAACAACAACAG---CAACA---GCAGCAGCAACA---ACAA------C------------A------------------------GCAG---C---AGCAACAACA------------------------------------------------------------------------------GCAGCA---------------A---CAAC--AGC------AACAACA---------------A---CAA---------CAGCAGCAACATA------------CT----------------------------------------CGGACCCAAACCACACCCATTCCTGCCCAGCAGCAGCA-------------------------------------------CTACACCCACGATCACA-----------------------------------------------------------------------------GT----GT	Size	Hit Count	Total Norm	Total
No Reads

droKik1

CA-----------------------------ACAGCAACTTCAAC-----------------------------------------------------------------------------------------------------------------------------------------------AACAGCAGCAAATTCAA-----------------------------------------------------CA-------AC---------------------------------------------------AGCAGAAAAAT---CAACA---ACAGCAGCAA---------------CATCAACAAGAGCA---ACTTCAACAACA---------GCAA---C---TTC---------------------------------------------------------------------------AACAACAGCAGCA------------------A---CATC--------------------------------------AA---------CAGCACCAACAA-----------------------CTTCAACAAC---------------------ATCAACCCAA--------------GTCACAG------------C----------------------------------------CCGA--------------------------CCAGCGACAATTGCAAAAGAT--CATCACCCTGAAGGATCAGGTCATTGGAGCTTTGA--CCAG-CGA--	Size	Hit Count	Total Norm	Total
No Reads

droFic1

CA-----------------------------GCTGCACAGAT-------------------------------------------------------------------------------------------------ACGC-------------AC-------CACAGCAGC--------AGC---------------------------------------------------AGCAACAGCAACACATTCTACTGA-------GC---------------------------------------------------AGCAGCAACAG---------------------------CAGCAGCAACAGC------------------------------------AA---G---CACAGCAGC------------------AA------------------------------------------------CAGCAACAGCAGCAGCA---------------G---C------------------------------CCAGCAG---CAG---------CAGCAGCAGTTG-----------------------TGTCAGTT------------G------CAACA------------------------------------------TCCG-TTGCTGCGGTTTCGACTAGCGGCGGCAGCTTGCCGGACAGTCCCG-CCCACGAATCG---CACTCG----------------------------------------------------------CACGAGTCGA--	Size	Hit Count	Total Norm	Total
No Reads

droEle1

GC----------------------------AGCAGCAATACCACT---TCAAGTGAAG---TTGCCACAACAGAGTCTAA-----------------------------------------------------------------CGTCG------------------------------------------------CACCCAA-----------------------------------------------------CA-------GC---------------------------------------------------AGCAGCAACAG---CAACG---GCAGCAGCAATCCCAATCC------C------------AGTA---------------------GCAA---C---ACCACCACCA---------------------------------------------------------------------GCAGCAGCAGCAGCA------------ACAA---CAAC--------------------------------------------------AATAGCAACAGCC----AGGCCAC--AA---CAACAG--------------CACC------TGTTG------------------------------------------CCAGCACGAGTCATGAT-------------------GCGAAAGCAGCCCAGC-GAGACGCTG---AGTCAG----------------------------------------------------------CTACTG-GCA--	Size	Hit Count	Total Norm	Total
No Reads

droRho1

GC----------------------------AGCAGCAACAGCAGC---------------------------------------------A------------------------------------------------------------------------------------------------CAACAGCAGCAGCCACAG-----------------------------------------------------CA-------GC---------------------------------------------------AGCAGCAACTG---CAACT---GCAGCAGCAA---------------CAGC------------------------------------AA---C---TGCAACAGCAACA------------------------------------------------------------------GCAACTGCAGCAGCA---------------A---CAGC-----------AACTGCA---------------G---CAG---------CAACAGCAACACCA------------G--------GAGCT------------C---------TACCG------------------------------------------CCAGCAGCAGCAACATC-------------------GCACTAGCAT-------GAGTGGCAT---AGCCAGCCAGCAGCACTTGCAACAGAT--GGACGCA------------------------------CAGT-ACA--	Size	Hit Count	Total Norm	Total
No Reads

droBia1

TG-----------------------------GTAACGGCAGCACC---ATTGGCA---------------------------------ACAC-------------------------C------AGCAACACTAGACAG--------------------------AACA--------------------------------------GCAGCAAC---------------------------ATC---AG--GCCGCACA-------GC---------------------------------------------------AGCAACAACAG---CAACA---GCAGCAGCAACT---------------------------------------CCAGCAACTCTAGCAA---C---AGCAG------CAACACTAGCCCTCCCCA-------------------CAGCAAC-----------------------ACCAGTAGCAGCA---------------GCCAC-----------------A---------------------A---CAA---------CAACAACAACAAT------------CA--------CAGCA---------------G------CAACA------------------------------------------TCATC-AGCGGCTTCT----------------G------C--------------------------AGCAC----------------------------------------------------------CATTTG----GC	Size	Hit Count	Total Norm	Total
No Reads

droTak1

TT-----------------------------GACGCACCTACCGCA--T-------------------AGTCA--------------------------------------------TATGCAT---------------ACACACCATCACCAACATGCGGCAGCCGTTGCAGCGGTCTATCA------------------------------T---------------------------------C---TC-----CAGCA----GC---------------------------------------------------AACAGCAGCAG---CAGCA---GCAGCAGCAGCT------GCAACAGC------------A------------------------GCAA---C---TGCAACAGCAGCAAC---------------------------------------------------------------AGCAACAGCAGCA---------------ACTGC-----------------A---------------------G---CAG---------CAGCAACAGCGGG------------CGA-ACG--------------------ATGCGAACAGCGCTG-----------------CA-----------------------ACAACTGGCGGCGATTC-------------------GGAGGCAACAGC----------GAC-----GGCAC----------------------------------------------------------CGCCCG-C-T--	Size	Hit Count	Total Norm	Total
No Reads

droEug1

GTCT-GATGCCCGGTGCTGGGGCAAGTGTTAACAATAATAAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCCAACACCAC-----C---AA--C--AACAACAA---------------------------------------------------TAA---CAACA---GCAGTAGCAACA---ACAACAACAAC------------A---ACAATAAT---------------AA---T---ACCAAA------------------------------------------------------ATGCAGGCAATGATCTGCAACAAAAGCAGCA------------------A---CAGC--------------------------------------AACAGCACCAACAACAACAACAGCAGCAG----C--TCA-TCC--------------------TCCT------CATCA------------------------------------------TCAT--------------------------------------------------------------------------------------------------------------------------------CCT----GC	Size	Hit Count	Total Norm	Total
No Reads

dm3

CG-----------G-----------------TGCGCAACAGCAGC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AACAACAACACCAT-----C---AG--C--AGCAGCAGCAACATCATCAGCAGCAACGTGTTGTTGCCAGCAGCAAC------------------------------CAGCAA---------------CAGC---------A------------------------A------C---AACAACAAC------------------TA------------------------------------------------CAGCAACAGCAGCAGCA---------------G---CAGC-----------------A---------------GCAACAA---------CAGCAGCAGCAGC--------------------AGCAGCAGCAGCATGATAA---------------TGGACCAAC--------------GTCCCATCATTTGCATCAATCATCTATCAGCATCTC----------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCATGATAA---------------TGGACCAAC--------------GTCCCA..........................................................................................................................................................	27	1	5.00	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCATTTGCATCAATCATCTATCAGCA................................................................................................................................	26	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0
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droSim2

GG-----------------------------TGCGCAGCAGCAGCA--G-------------------------------------------------------------------------------------------------------------------------CAG--------------------------------------------------------------------CAACAACACCAT-----C---AGCA-GCAGCAGCAGCAGCATCATCAGCAGCAACGTGTTGTTGCCAGCAGCAAC------------------------------CAGCAA---------------CAGC---------A------------------------G------C---AACAGCAGC------------------TG------------------------------------------------CAGCAACAGCAGCAGCAGCAACAACAGCAGCAG--------------------------------------------CAG---------CAGCAGCAGCAG--------------------CAGCAGCAGCAGCATGATAA---------------TGGACCAAC--------------GTCCCATCATTTGCATCAATCATCTATCAGCATCTC----------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAGCATGATAA---------------TGGACCAAC--------------GT..............................................................................................................................................................	27	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................GCCAGCAGCAAC------------------------------CAGCAA---------------CAGC---------A------------------------G------C---AACA............................................................................................................................................................................................................................................................................................................................................................................................................................	29	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................A--G-------------------------------------------------------------------------------------------------------------------------CAG--------------------------------------------------------------------CAACAACACCAT-----C---AGCA-GCAG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................G--------------------CAGCAGCAGCAGCATGATAA---------------TGGA...................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
.....................................GCAGCAGCA--G-------------------------------------------------------------------------------------------------------------------------CAG--------------------------------------------------------------------CAACAACAC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	10	0.90	9	0	0	0	0	9	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAG--------------------CAGCAGCAGCAGCATGA.........................................................................................................................................................................................................	21	4	0.75	3	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................AGCAGCAGCAGCATCATCAGCA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	7	0.71	5	0	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAGCATGATAA---------------TG.....................................................................................................................................................................................	18	2	0.50	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................GCAGCAGCATCATCAGCAGCAA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	2	0.50	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................GCAGCAGCATCATCAGCA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	14	0.07	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAACAGCAGCAG--------------------------------------------CAG---------CAGC......................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGC------------------TG------------------------------------------------CAGCAAC............................................................................................................................................................................................................................................................................................................................................	15	20	0.05	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0

droSec2

CA-----------------------------ACAACAACGGCAACA--A---------------------------TCACAATCCGAGCTTACAACTGAATGGTAATGGTAG-----C------AGCAACACGAGGCAA--------------------------CACAGCAGC--------GGC------------------AG---------------------------------CAACAGC---AG--ACAACAC----------------------------------------------------------------------------AGCA---GCAGCAGCAG---------------CAGCAGCAGCAGTA---ACA------------------GCAA---C---AGCAG------CAACATAAGCCCTCCC----------------------------------C-----------------CCAGCAGCAGCA---------------GCCGC-----------------A---------------------G---CAA---------CAACAACAATAAT------------CA--------CAGCG---------------G------CAACA------------------------------------------TCAT-TAGCGGCTTTT-----------------------------------------------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCA---------------GCCGC-----------------A---------------------G---CAA---------CAA.......................................................................................................................................................................................................................................................	20	4	0.25	1	0	0	1	0
.......................................................................................................................................................................................................................................................................................................................................................CAGCAGCAG---------------CAGCAGCAGCAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	1	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................CAGCAGCAG---------------CAGCAGCAGCAGT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	1	0
.................................................................................................................................................................................................................................................................................................................................................CA---GCAGCAGCAG---------------CAGCAGCAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	1	0	0	0
................................................................................................................................................................................................................................................................CAC----------------------------------------------------------------------------AGCA---GCAGCAGCAG---------------CAGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	1	0

droYak3

TG-----------------------------GTG-CAACAGTCGCA--------G---TTC----TACAT-----------------------------------------------CAACCAC---------------AATC-------------AGCAGTACCCACAGCAGC-----AACA------------------------------T---------------------------------C---AC-----CAGCAGCA-GC------------------------------------------------------AACATCAC---CAGCA---GCAGCAGCATCA------ACAACAGC------------A------------------------TCAGTATCAGCATCAGCAGC---------------------------------------------------------------------AGCATCAGCAGCAGCA---------------GCAACAGCAG-----------CATCA---------------G---CAG---------CAGCATCAGCAGA---------CAC--AA---CAGCAGCATCAAC---------------------A---------------------------------------------T-----------------------------------------------------------------------------------------------------------------------------CAACAG-GCA--	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
........................................................................................................................................................................................................................................................................CA-GC------------------------------------------------------AACATCAC---CAGCA---GCA.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	6	0.17	1	0	0	0	0	0	0	1	0	0	0	0
..........................................................................................................................................................................CAGC-----AACA------------------------------T---------------------------------C---AC-----CAGCAGCA-.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	6	0.17	1	0	0	0	0	0	0	1	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAGCA---------------GCAACAGCAG-----------CAT...........................................................................................................................................................................................................................................................................................	23	10	0.10	1	0	0	0	0	0	0	1	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAGCAG-----------CATCA---------------G---CAG---------CAGCA.....................................................................................................................................................................................................................................................	23	12	0.08	1	0	0	0	0	0	0	1	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGCAGCAGCA---------------GCAACAGCA..........................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAGCAGC---------------------------------------------------------------------AGCATCAGCA........................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCA---------------G---CAG---------CAGCATCAGCA...............................................................................................................................................................................................................................................	19	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAACAGCAG-----------CATCA---------------G---CA....................................................................................................................................................................................................................................................................	18	20	0.05	1	0	1	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................................AGC---------------------------------------------------------------------AGCATCAGCAGCAGCA---------------GC.................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	1	0	0	0	0	0	0	0

droEre2

AA-----------------------------ATAGCCGCTGTTGTG--G---------------------------CCGCCGCCATGGCCACCAGC--AATGGCAAT-------CCC---------------------------ACAC---------------------------------------CGACA---------------GCAGCAAT-----CCCCGCCAGCAGC---AGCAGCAGCAACACA--TTGCCC-------------------------------------------------------------------------------------AGTAGCAACA---ATAG------C---------------------------------------AG---T---TGC---------------------------------------------------------------------------CACAACAGCAGCAGCG---------------G---CAGC--GGCAGCAGCA---------------------G---CAA---------CTGCAACAGCAAC------------CAA-GTG--------------------CCAA-------------------TACAAGTGCCAATCCT-----------------------GAGCGGATCGCC-------------------GGGATCCACAT------------------CGTCAGCCAGTCA-----------------------------------------------------CATT----CC	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACAT------------------CGTCAGCCAGTCA-----------------------------------------------------CAT.......	21	1	1.00	1	0	0	0	0	0	1	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCCAATCCT-----------------------GAGCGGATCGCC-------------------GGGA.....................................................................................................	26	1	1.00	1	1	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCT-----------------------GAGCGGATCGCC-------------------GGGATCCA.................................................................................................	23	1	1.00	1	0	0	0	0	0	1	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-----------------------GAGCGGATCGCC-------------------GGGATCCA.................................................................................................	21	1	1.00	1	1	0	0	0	0	0	0
...............................................................................................................................................................................................A---------------GCAGCAAT-----CCCCGCCAGCT.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	4	0.25	1	0	1	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACAGCAGCAGCG---------------G---CAGC--.........................................................................................................................................................................................................................................................................................................	19	13	0.08	1	1	0	0	0	0	0	0

dgr_102

scaffold_14822:290318-290468 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-14.4	-14.3	-14.29