dgr-mir-iab-4

pre_miRNA [Dgri\mir-iab-4-RM]; Antisense to utr3 [utr3_minus_7917]; miRNA [Dgri\miR-iab-4-3p-RB]; miRNA [Dgri\miR-iab-4-5p-RA]

TTACACCGGGGGGACACTCCAAAGGACACTCTTGTAGAACCTGTGCAACTTCGTATACGTATACTGAATGTATCCTGAGTGTATCCTATCCGGTATACCTTCAGTATACGTAACACGAGGAAACACCAGCAACGCGGGATGTGTTTTGTATATATATAAATTTCGATA ***************************************.......((((((.(((((((((((((.((((((.((..........)).)).)))).)))))))))))))..)))))).....*****************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M041 female body
........................................................ACGTATACTGAATGTATCCTGA..........................................................................................	22	0	1	145.00	145	145
........................................................ACGTATACTGAATGTATCCTG...........................................................................................	21	0	1	34.00	34	34
.........................................................CGTATACTGAATGTATCCTGA..........................................................................................	21	0	1	13.00	13	13
.........................................................CGTATACTGAATGTATCCTG...........................................................................................	20	0	1	6.00	6	6
.........................................................CGTATACTGAATGTATCCTGAT.........................................................................................	22	1	1	5.00	5	5
........................................................ACGTATACTGAATGTATCCT............................................................................................	20	0	1	5.00	5	5
..........................................................................................CGGTATACCTTCAGTATACG..........................................................	20	0	1	2.00	2	2
.........................................................CGTATACTGAATGTATCCTGATT........................................................................................	23	1	1	2.00	2	2
..........................................................GTATACTGAATGTATCCTGATT........................................................................................	22	1	1	2.00	2	2
.............................................................................................TATACCTTCAGTATACGTAACA.....................................................	22	0	1	1.00	1	1
...........................................................................................GGTATACCTTCAGTATACGTAAC......................................................	23	0	1	1.00	1	1
........................................................ACGTATACTGAATGTATCCTGT..........................................................................................	22	1	1	1.00	1	1
.........................................................CGTATACTGAATGTATCCTGACT........................................................................................	23	1	1	1.00	1	1
........................................................ACGTATACTCAATGTATCCTG...........................................................................................	21	1	1	1.00	1	1
........................................................ACGTATACTGAATGTATCCTGTTT........................................................................................	24	2	1	1.00	1	1
........................................................ACGTATACTGAATGTATCCTGAATA.......................................................................................	25	2	1	1.00	1	1
.........................................................CGTATACTGAATGTATCCT............................................................................................	19	0	1	1.00	1	1
........................................................ACGTATACTGAATGTATCCTGAGTGA......................................................................................	26	1	1	1.00	1	1
........................................................ACGTGTACTGAATGTATCCTGA..........................................................................................	22	1	1	1.00	1	1
..........................................................GTATACTGAATGTATCCTGA..........................................................................................	20	0	1	1.00	1	1
........................................................ACGTATACTGAATGTATCCTGAT.........................................................................................	23	1	1	1.00	1	1
........................................................ACGTATACTGAATGTATCC.............................................................................................	19	0	1	1.00	1	1
..........................................................................................CGGTATACCTTCAGTATACGTAGC......................................................	24	1	1	1.00	1	1
........................................................ACGTATACTGAATCTATCCTGA..........................................................................................	22	1	1	1.00	1	1
...........................................................TATACTGAATGTATCCTGAAA........................................................................................	21	2	2	0.50	1	1

AATGTGGCCCCCCTGTGAGGTTTCCTGTGAGAACATCTTGGACACGTTGAAGCATATGCATATGACTTACATAGGACTCACATAGGATAGGCCATATGGAAGTCATATGCATTGTGCTCCTTTGTGGTCGTTGCGCCCTACACAAAACATATATATATTTAAAGCTAT *****************************************.......((((((.(((((((((((((.((((((.((..........)).)).)))).)))))))))))))..)))))).....***************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M041 female body	V109 male body
..............................................................................................TATGGAAGTCATATGCATT.......................................................	19	0	1	32.00	32	13	19
.............................................................................................ATATGGAAGTCATATGCATT.......................................................	20	0	1	18.00	18	17	1
............................................................................................CATATGGAAGTCATATGCATT.......................................................	21	0	1	15.00	15	15	0
...........................................................................................CCATATGGAAGTCATATGCATT.......................................................	22	0	1	9.00	9	9	0
.........................................................................................GGCCATATGGAAGTCATATGCATT.......................................................	24	0	1	4.00	4	4	0
...........................................................................................CCATATGGAAGTCATATGCAT........................................................	21	0	1	4.00	4	4	0
..............................................................................................TATGGAAGTCATATGCAT........................................................	18	0	1	3.00	3	3	0
.............................................................................................ATATGGAAGTCATATGCAT........................................................	19	0	1	2.00	2	2	0
.........................................................................................TGCCATATGGAAGTCATATGCATT.......................................................	24	1	1	2.00	2	1	1
............................................................................................CATATGGAAGTCATATGCAT........................................................	20	0	1	2.00	2	2	0
..............................................................................................TATGGAAGTCATATGCCTT.......................................................	19	1	1	1.00	1	0	1
.............................................................................................ATTTGGAAGTCATATGCATT.......................................................	20	1	1	1.00	1	0	1
............................................................................................CCTATGGAAGTCATATGCATT.......................................................	21	1	1	1.00	1	0	1
..............................................................................................TCTGGAAGTCATATGCATT.......................................................	19	1	1	1.00	1	0	1
..............................................................................................TGTGGAAGTCATATGCATT.......................................................	19	1	1	1.00	1	0	1
..............................................................................................TATGGAAGTCATATGCATTAA.....................................................	21	2	1	1.00	1	1	0
.............................................................................................ATATGGAATTCATATGCATT.......................................................	20	1	1	1.00	1	1	0
...............................................................................................................................TCGCGGGGCCCTACACAA.......................	18	3	20	0.15	3	0	3
..................................................................TTACATAGGACTCCCTTTG...................................................................................	19	3	20	0.05	1	1	0

Species	Coordinate	ID	Type	Alignment
droGri2	scaffold_14906:12815069-12815236 +	dgr-mir-iab-4	Known_mirbase	T----------TACACCGGGGG---------------------------------GACACT-----------CC------------AA-AGGACACTCTT---------GT---------AGAACCTGTGCAACTTCGTATACGTATACTGAATGTATCCTGAGTGTATCCTATCCGGTATACCTTCAGTATACGTAACACGAGGAAACACCAGCAACGCGGGATGTGT-------TTTGTAT-ATATATAAATTTCGATA-
droVir3	scaffold_12855:414659-414809 -	dvi-mir-iab-4	Known_mirbase	T----------TATAG--------------------------C------------GG-----------------------------AG-C----ACTTA-------------T----TGTAGAGCCTGTGCAACTTCGTATACGTATACTGAATGTATCCTGAGTGTATCCTATCCGGTATACCTTCAGTATACGTAACACGAGGAAACACCAGCGACGCGGGATGTGT--GATATATT----------TAGATTGCATTAA
droMoj3	scaffold_6540:1943706-1943850 +	dmo-mir-iab-4	Known_mirbase	T--------------------------------------------------------------------------------------A-C----ACTTTT--CAGGAGCGAAT----TGTTGAGCCTGTGCAACTTCGTATACGTATACTGAATGTATCCTGAGTGTATCCTATCCGGTATACCTTCAGTATACGTAACACGAGGAAACACCAGCAACGCGGGATGTGTGAAA-------------------ACTTCAATA-
droWil2	scf2_1100000004943:4905574-4905707 -	dwi-mir-iab-4	Known_mirbase	C----------ACCGGGTACCG----------------------------------------------------------------GT-C----ACTTTC---------C-------AGATGAATCTGTGCAACTTCGTATACGTATACTGAATGTATCCTGAGTGTATGCTATCCGGTATACCTTCAGTATACGTAACACGATGAAACACCAACAACGCGGGATGTGT---------------------------------
dp5	2:17671694-17671860 +	dps-mir-iab-4	Known_mirbase	C----------CACATCTGCGGATCCT----TTCG------------ACTGCA----CTCGTAATT-TTCTTTC------------AG-C----GGTTAT---------G---T--AGGATGAACCTGTGCGACTTCGTATACGTATACTGAATGTATCCTGAGTGTATCCTATCCGGTATACCTTCAGTATACGTAACACGAGGAAACACCAGCAACGCGGGATACGT---------------------------------
droPer2	scaffold_0:11526500-11526683 +	dpe-mir-iab-4	Known_mirbase	C----------CACATCTGCGGATCCT----TTCG------------ACTGCA----TTCGTAATT-TTCTTTC------------AG-C----GGTTAT---------G---T--AGGATGAACCTGTGCGACTTCGTATACGTATACTGAATGTATCCTGAGTGTATCCTATCCGGTATACCTTCAGTATACGTAACACGAGGAAACACCAGCAACGCGGGATATGTCGAACTG---------------AATTTAAACG-
droAna3	scaffold_13340:7215178-7215314 -	dan-mir-iab-4	Known_mirbase	T----------TGCAGCACTAGAAC----------------------------------------------------------------------ATTAC---------GGAGG--ATGGTGATTTTGTGCAACTTCGTATACGTATACTGAATGTATCCTGAGTGTATCCTATCCGGTATACCTTCAGTATACGTAACACGAGGTAACACCTTCAACGCGGGACGTG----------------------------------
droBip1	scf7180000396708:1638839-1639003 +			C----------TATCTTACCAGA------------------------------------------------------------------A----AATTAC---------GATGG--ATGGTGATTTTGTGCAACTTCGTATACGTATACTGAATGTATCCTGAGTGTATCCTATCCGGTATACCTTCAGTATACGTAACACGAGGAAACACTTTCAACGCGGGACGTG--AAA-ACTTTGTTTTA--GAAATATTTCAAAC-
droKik1	scf7180000302313:151124-151282 +			C----------TGCAA--------------------------C------TGCAG------TCCTTT-T----TCGTGTCCTTTATAAG-C----ACTTGC---------GGATG--ATGATGACTCTGTGCAACTTCGTATACGTATACTGAATGTATCCTGAGTGTATCCTATCCGGTATACCTTCAGTATACGTAACACGAGGAAACACAAGCAACGCGGGATGTG----------------------------------
droFic1	scf7180000452523:122298-122470 +			TTATCTCAATCTGCA--------------------------TCACGAACTGCAGCGACACGTC--T-T----TC------------AGTC----ACTTTCGC------CGGATTTCATAGTGATTGTGTGCGACCTCGTAAACGTATACTGAATGTATCCTGAGTGTATCCTATCCGGTATACCTTCAGTATACGTAACACGAGGAAGCACGAGCAACGCGGGATGTG----------------------------------
droEle1	scf7180000486474:1729401-1729545 +			C----------TGCA--------------------------TCTGCAACTGCATC-------------------------------GT-C----ACTTTC---------GGATT--ATGGTGATTCTGTGCGACCTCGTAAACGTATACTGAATGTATCCTGAGTGTATCCTATCCGGTATACCTTCAGTATACGTAACACGAGGAAGCACGAGCAACGCGGGATGTG----------------------------------
droRho1	scf7180000759657:23939-24097 +			C----------TTCA--------------------------TCTGCAACTGCAGCGACGCATCCTG-T----TT------------GG-C----ACTTTC---------GGATT--ATGGTGATTCTGTGCGACCTCGTAAACGTATACTGAATGTATCCTGAGTGTATCCTATCCGGTATACCTTCAGTATACGTAACACGAGGAAGCACGAGCAACGCGGGATGTG----------------------------------
droBia1	scf7180000299102:622739-622885 +			C----------TGCAG--------------------------------------CGGCGCATCTTT-C----TC------------GG-C----ACTTTT---------GGATT--ATGGTGATTCTGTGCGACCTCGTAAACGTATACTGAATGTATCCTGAGTGTATCCTATCCGGTATACCTTCAGTATACGTAACACGAGGAAGCACGAGCAACGCGGGATGTG----------------------------------
droTak1	scf7180000411269:86525-86711 +			C----------TGCA--------------------------CCTGGAACTGCAGCGGCGCATCCTTCT----TT------------GG-C----ACTTTT---------GGATT--ATGGTGATTCTGTGCGACCTCGTAAACGTATACTGAATGTATCCTGAGTGTATCCTATCCGGTATACCTTCAGTATACGTAACACGAGGAAGCACGAGCAACGTGGGATGTG--AAACACTTTTCTTTT----TAAAACTCGACG-
droEug1	scf7180000409804:92838-93029 +			T----------TAAATCTG--GATTTCATCGCTTGGCTGCATCTGGAACTGC------ACTTCATT-T----TG------------GT-C----ACTTTC---------GGATT--ATAGTGATTGTGTGCGACCTCGTAAACGTATACTGAATGTATCCTGAGTGTATCCTATCCGGTATACCTTCAGTATACGTAACACGAGGAAGCACGAGCAACGTGGGATGTG--AAACAGTTT----------------ACTTTA-
dm3	chr3R:12681931-12682104 +	dme-mir-iab-4	Known_mirbase	C----------TGCA--------------------------TTTGGATCCGCGACGACGCATAATT-T----TC------------AG-C----ACTTTT---------GAATA--ATGGCGATTCTGTGCGACCTCGTAAACGTATACTGAATGTATCCTGAGTGTATCCTATCCGGTATACCTTCAGTATACGTAACACGAGAGAGCACTAACAACGTGGGATGTG--AAACACTTT----------------TTAAGA-
droSim2	3r:8574090-8574248 -	dsi-mir-iab-4	Known_mirbase	C----------TGCA--------------------------TCTAGATCCGCGACACGGCATAATT-T----TC------------AG-C----ACTTTT---------GGATA--ATGGCGATTCTGTGCGACCTCGTAAACGTATACTGAATGTATCCTGAGTGTATCCTATCCGGTATACCTTCAGTATACGTAACACGAGATAGCACGAGCAACGTGGGATGTG----------------------------------
droSec2	scaffold_12:1472200-1472378 -	dse-mir-iab-4	Known_mirbase	C----------TGCA--------------------------TCTAGATCCGCGACACGGCATAATT-T----TC------------AG-C----ACTTTT---------GGATA--ATGGCGATTCTGTGCGACCTCGTAAACGTATACTGAATGTATCCTGAGTGTATCCTATCCGGTATACCTTCAGTATACGTAACACGAGATAGCACGAGCAACGTGGGATGTG--AAACACTTT-----T----TAAT--ACATCT-
droYak3	3R:11708943-11709101 -	dya-mir-iab-4	Known_mirbase	C----------CACA--------------------------TCTCGATCCGCGACGACGCGTAATT-T----TC------------AG-C----ACTTTT---------GGACT--AAGGCGATTCTGTGCGACCTCGTAAACGTATACTGAATGTATCCTGAGTGTATCCTATCCGGTATACCTTCAGTATACGTAACACGAGAAAGCACGAGCAACGTGGGATGTG----------------------------------
droEre2	scaffold_4770:8952392-8952550 -	der-mir-iab-4	Known_mirbase	C----------TGCA--------------------------TCTGGATCCGCGACGACGTATAATT-T----TC------------AG-C----ACTTTT---------GGATT--AAGGCGATTCTGTGCGACCTCGTAAACGTATACTGAATGTATCCTGAGTGTATCCTATCCGGTATACCTTCAGTATACGTAACACGAGAAAGCACGAGCAACGTGGGATGTG----------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droGri2

T----------TACACCGGGGG---------------------------------GACACT-----------CC------------AA-AGGACACTCTT---------GT---------AGAACCTGTGCAACTTCGTATACGTATACTGAATGTATCCTGAGTGTATCCTATCCGGTATACCTTCAGTATACGTAACACGAGGAAACACCAGCAACGCGGGATGTGT-------TTTGTAT-ATATATAAATTTCGATA-	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
.............................................................................................................................................ACGTATACTGAATGTATCCTGA...................................................................................................	22	1	145.00	145	145	0
.............................................................................................................................................ACGTATACTGAATGTATCCTG....................................................................................................	21	1	34.00	34	34	0
..............................................................................................................................................CGTATACTGAATGTATCCTGA...................................................................................................	21	1	13.00	13	13	0
..............................................................................................................................................CGTATACTGAATGTATCCTG....................................................................................................	20	1	6.00	6	6	0
..............................................................................................................................................CGTATACTGAATGTATCCTGAT..................................................................................................	22	1	5.00	5	5	0
.............................................................................................................................................ACGTATACTGAATGTATCCT.....................................................................................................	20	1	5.00	5	5	0
...............................................................................................................................................................................CGGTATACCTTCAGTATACG...................................................................	20	1	2.00	2	2	0
..................................................................................................................................................................................TATACCTTCAGTATACGTAACA..............................................................	22	1	1.00	1	1	0
................................................................................................................................................................................GGTATACCTTCAGTATACGTAAC...............................................................	23	1	1.00	1	1	0
.............................................................................................................................................ACGTATACTGAATGTATCCTGT...................................................................................................	22	1	1.00	1	1	0
..............................................................................................................................................CGTATACTGAATGTATCCT.....................................................................................................	19	1	1.00	1	1	0
.............................................................................................................................................ACGTATACTGAATGTATCCTGAGTGA...............................................................................................	26	1	1.00	1	1	0
...............................................................................................................................................GTATACTGAATGTATCCTGA...................................................................................................	20	1	1.00	1	1	0
.............................................................................................................................................ACGTATACTGAATGTATCCTGAT..................................................................................................	23	1	1.00	1	1	0
.............................................................................................................................................ACGTATACTGAATGTATCC......................................................................................................	19	1	1.00	1	1	0
................................................................................................................................................TATACTGAATGTATCCTGAAA.................................................................................................	21	2	0.50	1	1	0

droVir3

T----------TATAG--------------------------C------------GG-----------------------------AG-C----ACTTA-------------T----TGTAGAGCCTGTGCAACTTCGTATACGTATACTGAATGTATCCTGAGTGTATCCTATCCGGTATACCTTCAGTATACGTAACACGAGGAAACACCAGCGACGCGGGATGTGT--GATATATT----------TAGATTGCATTAA	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells	SRR2096013 Ovary_Strain_9_oxidized	SRR2096014 Ovary_Strain_160_oxidized	SRR2096026 embryo_0-2h from 14 day old Strain 9 mothers	SRR2096038 embryo_0-2h from 14 day old Strain 9 mothers	SRR2096050 embryo_0-2h from 14 day old Strain 160 mothers	SRR2096055 Ovary_Min_43	SRR2096056 Ovary_Min_46	SRR2096057 Ovary_Min_50	SRR2096058 Ovary_Min_98	SRR2096059 Ovary_Min_164	SRR2096060 Ovary_Min_193	SRR2096061 embryo_0-2h from 14 day old Strain 160 mothers	SRR2096072 embryo_0-2h from 15to16 day old dysgenic mothers	SRR2096079 embryo_0-2h from 15to16 day old dysgenic mothers	SRR2096080 embryo_0-2h from 15to16 day old nondysgenic mothers	SRR2096081 embryo_0-2h from 15to16 day old nondysgenic mothers
.............................................................................................................................................ACGTATACTGAATGTATCCTGA...................................................................................................	22	1	1928.00	1928	11	3	421	270	2	6	3	1	1	0	1	0	0	0	31	15	8	17	9	2	0	15	30	4	31	15	50	36	136	63	36	79	5	0	4	11	8	3	1	5	0	0	0	6	3	8	10	6	14	13	28	24	13	13	9	3	7	3	43	18	0	0	0	70	97	16	4	12	9	49	10	7	34	11	16	15	16	6	2
.............................................................................................................................................ACGTATACTGAATGTATCCTG....................................................................................................	21	1	816.00	816	5	1	403	14	0	2	0	0	1	0	0	0	0	0	16	12	4	16	13	7	4	8	22	1	9	5	9	6	61	26	16	54	0	6	1	1	0	1	0	4	0	0	0	0	0	2	0	2	1	0	2	1	0	7	0	0	0	1	6	1	0	0	0	1	2	0	0	1	7	20	14	0	10	7	1	0	0	1	1
.............................................................................................................................................ACGTATACTGAATGTATCCT.....................................................................................................	20	1	165.00	165	0	0	33	2	0	0	0	0	0	0	0	0	0	0	7	9	2	8	9	0	1	8	8	0	2	3	1	4	9	5	7	25	0	1	1	0	0	0	4	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	4	0	0	0	1	5	0	1	1	2	0	0	0	0	0
.............................................................................................................................................ACGTATACTGAATGTATCCTGT...................................................................................................	22	1	86.00	86	0	0	8	2	0	0	1	0	0	0	0	0	0	0	0	0	0	2	1	0	0	0	3	0	0	0	3	3	30	5	3	19	0	0	0	0	1	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
..............................................................................................................................................CGTATACTGAATGTATCCTGA...................................................................................................	21	1	76.00	76	0	0	38	8	0	0	0	0	0	0	0	0	0	0	0	0	0	2	2	0	0	0	1	0	1	0	1	0	8	1	1	4	0	0	0	1	1	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	1	0	1	1
.............................................................................................................................................ACGTATACTGAATGTATCC......................................................................................................	19	1	74.00	74	2	0	5	43	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	2	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	4	2	0	2	0	1	0	0	4	0	0	0	0	0	0	0	0	0	1	0	1	0	3	0	0	0	0	0	0
..............................................................................................................................................CGTATACTGAATGTATCCTG....................................................................................................	20	1	54.00	54	0	0	47	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	1	0	0	0	0	0	1	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
..............................................................................................................................................CGTATACTGAATGTATCCTGAT..................................................................................................	22	1	33.00	33	1	0	3	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0	3	1	0	3	1	1	0	0	0	0	2	0	0	0	0	0	1	0	0	0	0	2	0	0	0	1	1	3	0	1	0
.............................................................................................................................................ACGTATACTGAATGTATCCTGAGTGTATCCTATC.......................................................................................	34	1	24.00	24	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	3	2	3	0	3	0	3	3	0	0	0	1	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................CGGTATACCTTCAGTATACGT..................................................................	21	1	24.00	24	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	1	0	0	3	6	0	0	1	0	0	3	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...............................................................................................................................................................................CGGTATACCTTCAGTATACGTAAC...............................................................	24	1	22.00	22	0	0	1	7	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	5	2	0	0	0	0	0	0	1	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................CGGTATACCTTCAGTATACG...................................................................	20	1	22.00	22	0	0	21	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................ACGTATACTGAATGTATCCTGAA..................................................................................................	23	1	21.00	21	0	0	1	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	1	1	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	2	0	0	0	0	4	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................ACGTATACTGAATGTATCCTGAT..................................................................................................	23	1	18.00	18	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	1	0	1	1	0	0	0	0	0	0	0	1	0	2	0	0	0	1	0	2	0	2	2	0	0	0	0	0
................................................................................................................................................TATACTGAATGTATCCTGAAA.................................................................................................	21	1	15.00	15	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	2	0	0	0	1	0	0	0	0	0	0	0	0	1	0	2	0	1	1	3	0	0	0	0	0
.............................................................................................................................................ACGTATACTGAATGTATC.......................................................................................................	18	1	13.00	13	1	1	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	1	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................CGGTATACCTTCAGTATACGTA.................................................................	22	1	12.00	12	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	1	0	1	0	0	1	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................CGTATACTGAATGTATCCTGAA..................................................................................................	22	1	10.00	10	0	0	1	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................TATACCTTCAGTATACGTAACT..............................................................	22	1	8.00	8	0	0	1	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................CGGTATACCTTCAGTATACGTAACT..............................................................	25	1	7.00	7	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	1	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................TATACCTTCAGTATACGTAACC..............................................................	22	1	7.00	7	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................ACGTATACTGAATGTATCCTGTC..................................................................................................	23	1	6.00	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	3	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................TATACCTTCAGTATACGTAAC...............................................................	21	1	6.00	6	0	0	1	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................ACGTATACTGAATGTATCCTT....................................................................................................	21	1	6.00	6	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................ACGTATACTGAATGTATCCTGAGTGTATCCTATCC......................................................................................	35	1	6.00	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	2	1	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................TATACCTTCAGTATACGTAACA..............................................................	22	1	6.00	6	0	0	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................ACGTATACTGAATGTATCCTC....................................................................................................	21	1	5.00	5	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................CGTATACTGAATGTATCCTGAC..................................................................................................	22	1	5.00	5	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................GTATACTGAATGTATCCTGA...................................................................................................	20	1	4.00	4	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................ACGTATACTGAATGTATCCTGG...................................................................................................	22	1	4.00	4	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................CGTATACTGAATGTATCC......................................................................................................	18	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	1	0	1	0	1	0	0	0	0	0	0
...............................................................................................................................................GTATACTGAATGTATCCTG....................................................................................................	19	1	4.00	4	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................CGGTATACCTTCAGTATACGTAA................................................................	23	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................ACGTATACTGAATGTATCCTGATCT................................................................................................	25	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................CGTATACTGAATGTATCCTGATA.................................................................................................	23	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0
..............................................................................................................................................CGTATACTGAATGTATCCTGAAA.................................................................................................	23	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................CGTATACTGAATGTATCCTGACA.................................................................................................	23	1	3.00	3	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................ACGTATACTGAATGTATCCTGACC.................................................................................................	24	1	3.00	3	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................TATACCTTCAGTATACGTAA................................................................	20	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................ACGTATACTGAATGTATCCTGATC.................................................................................................	24	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................CGTATACTGAATGTATCCT.....................................................................................................	19	1	3.00	3	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................CGTATACTGAATGTATCCTGATC.................................................................................................	23	1	3.00	3	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................ACGTATACTGAATGTATCCTGAGTGTATCCT..........................................................................................	31	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................GGTATACCTTCAGTATACGTAAC...............................................................	23	1	2.00	2	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................ACGTATACTGAATGTATCCTGAAC.................................................................................................	24	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................ACGTATACTGAATGTATCCTGAAA.................................................................................................	24	1	2.00	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................ACGTATACTGAATGTATCCTGAG..................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................ACGTATACTGAATGTATCCTGAC..................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................ACGTATACTGAATGTATCCTGAGTGTATCCTATCT......................................................................................	35	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................TATACCTTCAGTATACGTAACG..............................................................	22	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................TACCTTCAGTATACGTAAC...............................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................ACTGAATGTATCCTGA...................................................................................................	16	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................CGTATACTGAATGTATC.......................................................................................................	17	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................GTATACTGAATGTATCCTGAAA.................................................................................................	22	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................GGTATACCTTCAGTATACGTA.................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................ACGTATACTGAATGTATCCTGTT..................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................CGTATACTGAATGTATCCTGAG..................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................ATACCTTCAGTATACGTAAC...............................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................CGGTATACCTTCAGTATACGTAT................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................TATACTGAATGTATCCTGA...................................................................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................GGTATACCTTCAGTATACGT..................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................CGTATACTGAATGTATCCTGAGC.................................................................................................	23	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................ACGTATACTGAATGTATCCTGAGTGTATCCTATT.......................................................................................	34	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................CGGTATACCTTCAGTATACT...................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................CGGTATACCTTCAGTATACGTT.................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................ACGTATACTGAATGTATCCTGATA.................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1
...............................................................................................................................................GTATACTGAATGTATCCTGAAC.................................................................................................	22	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................CGGTATACCTTCAGTATAC....................................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................ACGTATACTGAATGTATCCTA....................................................................................................	21	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................CGTATACTGAATGTATCCTGATAA................................................................................................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................CGGTATACCTTCAGTATACGTAACC..............................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................TCCGGTATACCTTCAGTATACGTAAC...............................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................ATACTGAATGTATCCTGA...................................................................................................	18	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................CGTATACTGAATGTATCCTGT...................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................TATACTGAATGTATCC......................................................................................................	16	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................TATACTGAATGTATCCTGAA..................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................TATACTGAATGTATCCTGAAAA................................................................................................	22	3	0.67	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
................................................................................................................................................TATACTGAATGTATCCTGTT..................................................................................................	20	2	0.50	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

T--------------------------------------------------------------------------------------A-C----ACTTTT--CAGGAGCGAAT----TGTTGAGCCTGTGCAACTTCGTATACGTATACTGAATGTATCCTGAGTGTATCCTATCCGGTATACCTTCAGTATACGTAACACGAGGAAACACCAGCAACGCGGGATGTGTGAAA-------------------ACTTCAATA-	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
.............................................................................................................................................ACGTATACTGAATGTATCCTGA...................................................................................................	22	1	13359.00	13359	680	197	0	1	12481	0
.............................................................................................................................................ACGTATACTGAATGTATCCTG....................................................................................................	21	1	937.00	937	565	22	0	0	350	0
.............................................................................................................................................ACGTATACTGAATGTATCC......................................................................................................	19	1	784.00	784	6	0	0	0	778	0
..............................................................................................................................................CGTATACTGAATGTATCCTGA...................................................................................................	21	1	170.00	170	67	1	0	0	102	0
...............................................................................................................................................................................CGGTATACCTTCAGTATACGTAAC...............................................................	24	1	147.00	147	0	2	0	0	145	0
..................................................................................................................................................................................TATACCTTCAGTATACGTAACT..............................................................	22	1	137.00	137	1	4	0	0	132	0
.............................................................................................................................................ACGTATACTGAATGTATCCT.....................................................................................................	20	1	125.00	125	40	7	0	0	78	0
..............................................................................................................................................CGTATACTGAATGTATCCTGAT..................................................................................................	22	1	124.00	124	4	8	0	0	112	0
.............................................................................................................................................ACGTATACTGAATGTATC.......................................................................................................	18	1	108.00	108	1	0	0	0	107	0
.............................................................................................................................................ACGTATACTGAATGTATCCTGAA..................................................................................................	23	1	104.00	104	2	0	0	0	102	0
..................................................................................................................................................................................TATACCTTCAGTATACGTAAC...............................................................	21	1	82.00	82	0	2	0	0	80	0
.............................................................................................................................................ACGTATACTGAATGTATCCTGAT..................................................................................................	23	1	81.00	81	2	3	0	0	76	0
..............................................................................................................................................CGTATACTGAATGTATCCTG....................................................................................................	20	1	70.00	70	70	0	0	0	0	0
.............................................................................................................................................ACGTATACTGAATGTATCCTGAC..................................................................................................	23	1	68.00	68	0	0	0	0	68	0
..............................................................................................................................................CGTATACTGAATGTATCCTGAC..................................................................................................	22	1	67.00	67	0	2	0	0	65	0
..............................................................................................................................................CGTATACTGAATGTATCCTGAA..................................................................................................	22	1	65.00	65	3	4	0	0	58	0
.............................................................................................................................................ACGTATACTGAATGTATCCTGC...................................................................................................	22	1	41.00	41	1	1	0	0	39	0
..................................................................................................................................................................................TATACCTTCAGTATACGTAACC..............................................................	22	1	34.00	34	0	0	0	0	34	0
..................................................................................................................................................................................TATACCTTCAGTATACGTAACA..............................................................	22	1	32.00	32	5	3	0	0	24	0
.............................................................................................................................................ACGTATACTGAATGTATCCTGT...................................................................................................	22	1	29.00	29	5	1	0	0	23	0
.............................................................................................................................................ACGTATACTGAATGTATCCC.....................................................................................................	20	1	24.00	24	0	0	0	0	24	0
...............................................................................................................................................GTATACTGAATGTATCCTGA...................................................................................................	20	1	22.00	22	5	1	0	0	16	0
.............................................................................................................................................ACGTATACTGAATGTATCCTGG...................................................................................................	22	1	18.00	18	2	1	0	0	15	0
...............................................................................................................................................................................CGGTATACCTTCAGTATACGTAACT..............................................................	25	1	14.00	14	0	0	0	0	14	0
................................................................................................................................................TATACTGAATGTATCCTGAAA.................................................................................................	21	1	13.00	13	0	0	0	0	13	0
...............................................................................................................................................................................CGGTATACCTTCAGTATACGT..................................................................	21	1	11.00	11	2	3	0	0	6	0
...............................................................................................................................................................................CGGTATACCTTCAGTATACG...................................................................	20	1	11.00	11	11	0	0	0	0	0
..............................................................................................................................................CGTATACTGAATGTATCCTGAAA.................................................................................................	23	1	10.00	10	0	0	0	0	10	0
..............................................................................................................................................CGTATACTGAATGTATCCTGACC.................................................................................................	23	1	10.00	10	0	0	0	0	10	0
...............................................................................................................................................GTATACTGAATGTATCCTG....................................................................................................	19	1	9.00	9	8	0	0	0	1	0
..............................................................................................................................................CGTATACTGAATGTATCC......................................................................................................	18	1	9.00	9	1	0	0	0	8	0
.................................................................................................................................................ATACTGAATGTATCCTGA...................................................................................................	18	1	9.00	9	0	0	0	0	9	0
.............................................................................................................................................ACGTATACTGAATGTATCCTGATC.................................................................................................	24	1	8.00	8	0	0	0	0	8	0
...............................................................................................................................................................................CGGTATACCTTCAGTATACGTA.................................................................	22	1	8.00	8	2	0	0	0	6	0
................................................................................................................................................TATACTGAATGTATCCTGA...................................................................................................	19	1	7.00	7	3	0	0	0	4	0
...............................................................................................................................................................................CGGTATACCTTCAGTATACGTAACC..............................................................	25	1	6.00	6	0	0	0	0	6	0
..................................................................................................................................................................................TATACCTTCAGTATACGTAACAC.............................................................	23	1	5.00	5	0	1	0	0	4	0
.............................................................................................................................................ACGTATACTGAATGTATCCTT....................................................................................................	21	1	5.00	5	2	0	0	0	3	0
..............................................................................................................................................CGTATACTGAATGTATCCT.....................................................................................................	19	1	4.00	4	4	0	0	0	0	0
..........................................................................................................................................TATACGTATACTGAATGTATCC......................................................................................................	22	1	4.00	4	1	0	0	0	3	0
...........................................................................................................................................ATACGTATACTGAATGTATCCT.....................................................................................................	22	1	4.00	4	0	0	0	0	4	0
................................................................................................................................................................................GGTATACCTTCAGTATACGTAAC...............................................................	23	1	4.00	4	0	0	0	0	4	0
..............................................................................................................................................CGTATACTGAATGTATCCTGTT..................................................................................................	22	1	4.00	4	0	0	0	0	4	0
...................................................................................................................................................................................ATACCTTCAGTATACGTAAC...............................................................	20	1	4.00	4	0	0	0	0	4	0
.............................................................................................................................................ACGTATACTGAATGTATCCTGAG..................................................................................................	23	1	4.00	4	0	0	0	0	4	0
.............................................................................................................................................ACGTATACTGAATGTATCCTGAAA.................................................................................................	24	1	4.00	4	0	0	0	0	4	0
...................................................................................................................................................................................ATACCTTCAGTATACGTAACAC.............................................................	22	1	3.00	3	0	0	0	0	3	0
...............................................................................................................................................GTATACTGAATGTATCCTGAA..................................................................................................	21	1	3.00	3	0	0	0	0	3	0
..............................................................................................................................................CGTATACTGAATGTATCCTGATC.................................................................................................	23	1	3.00	3	0	0	0	0	3	0
.............................................................................................................................................ACGTATACTGAATGTATCCTGAGT.................................................................................................	24	1	3.00	3	0	0	0	0	3	0
.................................................................................................................................................................................GTATACCTTCAGTATACGTAAC...............................................................	22	1	3.00	3	1	0	0	0	2	0
...............................................................................................................................................GTATACTGAATGTATCCTGAC..................................................................................................	21	1	3.00	3	1	0	0	0	2	0
.............................................................................................................................................ACGTATACTGAATGTATCCTGATA.................................................................................................	24	1	3.00	3	0	0	0	0	3	0
.............................................................................................................................................ACGTATACTGAATGTATCCTGACC.................................................................................................	24	1	3.00	3	0	0	0	0	3	0
...............................................................................................................................................GTATACTGAATGTATCCTGAAA.................................................................................................	22	1	3.00	3	0	0	0	0	3	0
............................................................................................................................................TACGTATACTGAATGTATCCTG....................................................................................................	22	1	3.00	3	1	1	0	0	1	0
..............................................................................................................................................CGTATACTGAATGTATCCTGAG..................................................................................................	22	1	3.00	3	0	1	0	0	2	0
...............................................................................................................................................................................CGGTATACCTTCAGTATACGC..................................................................	21	1	2.00	2	0	0	0	0	2	0
.............................................................................................................................................ACGTATACTGAATGTATCCTC....................................................................................................	21	1	2.00	2	1	0	0	0	1	0
...................................................................................................................................................................................ATACCTTCAGTATACGTAACT..............................................................	21	1	2.00	2	2	0	0	0	0	0
............................................................................................................................................TACGTATACTGAATGTATCCTGA...................................................................................................	23	1	2.00	2	2	0	0	0	0	0
..............................................................................................................................................CGTATACTGAATGTATCCTGATA.................................................................................................	23	1	2.00	2	0	0	0	0	2	0
..............................................................................................................................................CGTATACTGAATGTATCCTGACA.................................................................................................	23	1	2.00	2	0	0	0	0	2	0
...................................................................................................................................................................................ATACCTTCAGTATACGTAACA..............................................................	21	1	2.00	2	1	0	0	0	1	0
...............................................................................................................................................................................CGGTATACCTTCAGTATACGTAC................................................................	23	1	2.00	2	0	0	0	0	2	0
...............................................................................................................................................................................CGGTATACCTTCAGTATACGTC.................................................................	22	1	2.00	2	1	0	0	0	1	0
...............................................................................................................................................................................CGGTATACCTTCAGTATACGTAA................................................................	23	1	2.00	2	0	0	0	0	2	0
...............................................................................................................................................GTATACTGAATGTATCCTGACC.................................................................................................	22	1	2.00	2	0	0	0	0	2	0
...............................................................................................................................................GTATACTGAATGTATCCTGAAAC................................................................................................	23	1	1.00	1	0	0	0	0	1	0
...............................................................................................................AT----TGTTGAGCCTGTGCAACTT..............................................................................................................................	21	1	1.00	1	0	0	0	0	1	0
................................................................................................................................................................................GGTATACCTTCAGTATAC....................................................................	18	1	1.00	1	1	0	0	0	0	0
.............................................................................................................................................................................TCCGGTATACCTTCAGTATACG...................................................................	22	1	1.00	1	0	1	0	0	0	0
.............................................................................................................................................ACGTATACTGAATGTATCCTGAAG.................................................................................................	24	1	1.00	1	0	0	0	0	1	0
..........................................................................................................................................................................CTATCCGGTATACCTTCAGTATACGTAAC...............................................................	29	1	1.00	1	0	0	0	0	1	0
...............................................................................................................................................GTATACTGAATGTATCCTGAGC.................................................................................................	22	1	1.00	1	0	0	0	0	1	0
...............................................................................................................................................GTATACTGAATGTATCCTGAAC.................................................................................................	22	1	1.00	1	0	0	0	0	1	0
...............................................................................................................................................GTATACTGAATGTATCCTGAGTT................................................................................................	23	1	1.00	1	0	0	0	0	1	0
...........................................................................................................................................ATACGTATACTGAATGTATCC......................................................................................................	21	1	1.00	1	0	0	0	0	1	0

droWil2

C----------ACCGGGTACCG----------------------------------------------------------------GT-C----ACTTTC---------C-------AGATGAATCTGTGCAACTTCGTATACGTATACTGAATGTATCCTGAGTGTATGCTATCCGGTATACCTTCAGTATACGTAACACGATGAAACACCAACAACGCGGGATGTGT---------------------------------	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
.............................................................................................................................................ACGTATACTGAATGTATCCTGA...................................................................................................	22	1	693.00	693	1	358	0	333	1
.............................................................................................................................................ACGTATACTGAATGTATCCTG....................................................................................................	21	1	361.00	361	2	312	0	47	0
..............................................................................................................................................CGTATACTGAATGTATCCTGA...................................................................................................	21	1	42.00	42	0	36	1	5	0
.............................................................................................................................................ACGTATACTGAATGTATCCT.....................................................................................................	20	1	35.00	35	0	20	0	14	1
..............................................................................................................................................CGTATACTGAATGTATCCTG....................................................................................................	20	1	26.00	26	0	26	0	0	0
..................................................................................................................................................................................TATACCTTCAGTATACGTAACA..............................................................	22	1	18.00	18	0	3	0	15	0
.............................................................................................................................................ACGTATACTGAATGTATCCTGT...................................................................................................	22	1	9.00	9	0	4	0	5	0
...............................................................................................................................................................................CGGTATACCTTCAGTATACGT..................................................................	21	1	6.00	6	0	0	0	6	0
...............................................................................................................................................GTATACTGAATGTATCCTGA...................................................................................................	20	1	4.00	4	1	2	0	1	0
...............................................................................................................................................................................CGGTATACCTTCAGTATACGTA.................................................................	22	1	3.00	3	0	2	0	1	0
.............................................................................................................................................ACGTATACTGAATGTATCCTGAG..................................................................................................	23	1	3.00	3	0	1	0	2	0
..................................................................................................................................................................................TATACCTTCAGTATACGTAACT..............................................................	22	1	3.00	3	0	0	0	3	0
.............................................................................................................................................ACGTATACTGAATGTATCCTGG...................................................................................................	22	1	3.00	3	0	3	0	0	0
............................................................................................................................................TACGTATACTGAATGTATCCT.....................................................................................................	21	1	2.00	2	0	0	0	2	0
..............................................................................................................................................CGTATACTGAATGTATCCTGAA..................................................................................................	22	1	2.00	2	0	1	0	1	0
..............................................................................................................................................CGTATACTGAATGTATCCT.....................................................................................................	19	1	2.00	2	0	2	0	0	0
..................................................................................................................................................................................TATACCTTCAGTATACGTAAC...............................................................	21	1	2.00	2	0	0	0	2	0
...............................................................................................................................................................................CGGTATACCTTCAGTATACG...................................................................	20	1	2.00	2	0	1	0	1	0
.............................................................................................................................................ACGTATACTGAATGTATCCTGAGT.................................................................................................	24	1	2.00	2	0	1	0	1	0
...............................................................................................................................................................................CGGTATACCTTCAGTATACGTAA................................................................	23	1	2.00	2	0	0	0	2	0
................................................................................................................................................TATACTGAATGTATCCTGAGTG................................................................................................	22	1	2.00	2	0	0	0	2	0
.............................................................................................................................................ACGTATACTGAATGTATCCTGAGTGT...............................................................................................	26	1	2.00	2	0	0	0	2	0
.............................................................................................................................................ACGTATACTGAATGTATCC......................................................................................................	19	1	2.00	2	0	1	0	1	0
...............................................................................................................................................GTATACTGAATGTATCCTGATA.................................................................................................	22	1	1.00	1	0	1	0	0	0
.............................................................................................................................................ACGTATACTGAATGTATCCTGAA..................................................................................................	23	1	1.00	1	0	1	0	0	0
..............................................................................................................................................CGTATACTGAATGTATCCTGAT..................................................................................................	22	1	1.00	1	0	1	0	0	0
.............................................................................................................................................ACGTATACTGAATGTATC.......................................................................................................	18	1	1.00	1	0	0	0	1	0
..........................................................................................................................................TATACGTATACTGAATGTATCC......................................................................................................	22	1	1.00	1	0	0	0	1	0
...................................................................................................................................................................................ATACCTTCAGTATACGTAAC...............................................................	20	1	1.00	1	0	1	0	0	0
................................................................................................................................................TATACTGAATGTATCCTG....................................................................................................	18	1	1.00	1	0	1	0	0	0
.............................................................................................................................................ACGTATACTGAATGTATCCTGAGTG................................................................................................	25	1	1.00	1	0	0	0	1	0
............................................................................................................................................TACGTATACTGAATGTATC.......................................................................................................	19	1	1.00	1	0	0	0	1	0
.............................................................................................................................................ACGTATACTGAATGTATCCTC....................................................................................................	21	1	1.00	1	0	0	0	1	0
.............................................................................................................................................ACGTATACTGAATGTATCCTT....................................................................................................	21	1	1.00	1	0	0	0	1	0
................................................................................................................................................TATACTGAATGTATCCTGAAA.................................................................................................	21	1	1.00	1	0	1	0	0	0
.....................................................................................................................AGATGAATCTGTGCAACTTCGT...........................................................................................................................	22	1	1.00	1	0	0	0	1	0
..................................................................................................................................................................................TATACCTTCAGTATACGTAA................................................................	20	1	1.00	1	0	0	0	1	0
..............................................................................................................................................CGTATACTGAATGTATCC......................................................................................................	18	1	1.00	1	0	1	0	0	0
...............................................................................................................................................................................CGGTATACCTTCAGTATACGTAAC...............................................................	24	1	1.00	1	0	1	0	0	0

dp5

C----------CACATCTGCGGATCCT----TTCG------------ACTGCA----CTCGTAATT-TTCTTTC------------AG-C----GGTTAT---------G---T--AGGATGAACCTGTGCGACTTCGTATACGTATACTGAATGTATCCTGAGTGTATCCTATCCGGTATACCTTCAGTATACGTAACACGAGGAAACACCAGCAACGCGGGATACGT---------------------------------	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
.............................................................................................................................................ACGTATACTGAATGTATCCTGA...................................................................................................	22	1	2365.00	2365	1	931	675	3	250	5	0	29	199	272
.............................................................................................................................................ACGTATACTGAATGTATCCTG....................................................................................................	21	1	718.00	718	1	650	37	0	14	1	1	1	5	8
..............................................................................................................................................CGTATACTGAATGTATCCTGA...................................................................................................	21	1	90.00	90	0	81	5	0	3	0	0	0	1	0
.............................................................................................................................................ACGTATACTGAATGTATCC......................................................................................................	19	1	89.00	89	0	1	86	1	1	0	0	0	0	0
..............................................................................................................................................CGTATACTGAATGTATCCTG....................................................................................................	20	1	60.00	60	0	60	0	0	0	0	0	0	0	0
..................................................................................................................................................................................TATACCTTCAGTATACGTAAC...............................................................	21	1	36.00	36	0	3	31	1	1	0	0	0	0	0
.............................................................................................................................................ACGTATACTGAATGTATCCT.....................................................................................................	20	1	33.00	33	0	21	4	0	8	0	0	0	0	0
...............................................................................................................................................................................CGGTATACCTTCAGTATACGTAAC...............................................................	24	1	31.00	31	0	2	27	1	1	0	0	0	0	0
..................................................................................................................................................................................TATACCTTCAGTATACGTAACA..............................................................	22	1	21.00	21	0	5	11	0	5	0	0	0	0	0
..................................................................................................................................................................................TATACCTTCAGTATACGTAACT..............................................................	22	1	19.00	19	0	4	15	0	0	0	0	0	0	0
.............................................................................................................................................ACGTATACTGAATGTATCCTGAA..................................................................................................	23	1	18.00	18	0	1	3	0	1	0	0	4	8	1
.............................................................................................................................................ACGTATACTGAATGTATCCTGT...................................................................................................	22	1	15.00	15	0	7	0	0	5	0	0	0	3	0
.............................................................................................................................................ACGTATACTGAATGTATC.......................................................................................................	18	1	12.00	12	0	0	10	0	2	0	0	0	0	0
..................................................................................................................................................................................TATACCTTCAGTATACGTAACC..............................................................	22	1	9.00	9	0	1	8	0	0	0	0	0	0	0
...............................................................................................................................................GTATACTGAATGTATCCTG....................................................................................................	19	1	9.00	9	0	9	0	0	0	0	0	0	0	0
.............................................................................................................................................ACGTATACTGAATGTATCCTGAT..................................................................................................	23	1	8.00	8	0	1	1	0	1	0	0	2	3	0
..............................................................................................................................................CGTATACTGAATGTATCCTGAT..................................................................................................	22	1	7.00	7	0	1	1	0	5	0	0	0	0	0
.............................................................................................................................................ACGTATACTGAATGTATCCTGG...................................................................................................	22	1	6.00	6	0	1	2	0	3	0	0	0	0	0
...............................................................................................................................................................................CGGTATACCTTCAGTATACG...................................................................	20	1	5.00	5	0	4	0	0	1	0	0	0	0	0
.............................................................................................................................................ACGTATACTGAATGTATCCTGC...................................................................................................	22	1	5.00	5	0	2	3	0	0	0	0	0	0	0
...............................................................................................................................................................................CGGTATACCTTCAGTATACGT..................................................................	21	1	4.00	4	0	2	1	0	0	0	1	0	0	0
...............................................................................................................................................GTATACTGAATGTATCCTGA...................................................................................................	20	1	4.00	4	0	4	0	0	0	0	0	0	0	0
...............................................................................................................................................................................CGGTATACCTTCAGTATACGTA.................................................................	22	1	4.00	4	0	4	0	0	0	0	0	0	0	0
...................................................................................................................................................................................ATACCTTCAGTATACGTAAC...............................................................	20	1	3.00	3	0	1	2	0	0	0	0	0	0	0
..............................................................................................................................................CGTATACTGAATGTATCCTGAA..................................................................................................	22	1	3.00	3	0	1	0	0	2	0	0	0	0	0
..............................................................................................................................................CGTATACTGAATGTATCCTGAC..................................................................................................	22	1	3.00	3	0	2	1	0	0	0	0	0	0	0
................................................................................................................................................TATACTGAATGTATCCTG....................................................................................................	18	1	2.00	2	0	1	0	0	0	0	0	0	0	1
...............................................................................................................................................................................CGGTATACCTTCAGTATACGTAACT..............................................................	25	1	2.00	2	0	0	2	0	0	0	0	0	0	0
.............................................................................................................................................ACGTATACTGAATGTATCCC.....................................................................................................	20	1	2.00	2	0	0	2	0	0	0	0	0	0	0
................................................................................................................................................TATACTGAATGTATCCTGA...................................................................................................	19	1	2.00	2	0	1	0	0	1	0	0	0	0	0
..................................................................................................................................................................................TATACCTTCAGTATACGTAACAC.............................................................	23	1	2.00	2	0	0	2	0	0	0	0	0	0	0
...............................................................................................................................................................................CGGTATACCTTCAGTATACGTAA................................................................	23	1	2.00	2	0	0	0	0	1	0	0	0	1	0
................................................................................................................................................................................GGTATACCTTCAGTATAC....................................................................	18	1	2.00	2	0	2	0	0	0	0	0	0	0	0
..............................................................................................................................................CGTATACTGAATGTATCCT.....................................................................................................	19	1	2.00	2	0	2	0	0	0	0	0	0	0	0
...............................................................................................................................................GTATACTGAATGTATCCTGAC..................................................................................................	21	1	2.00	2	0	0	2	0	0	0	0	0	0	0
...............................................................................................................................................................................CGGTATACCTTCAGTATAC....................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................ATACCTTCAGTATACGTAACA..............................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................ACGTATACTGAATGTATCCTGTT..................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................ACGTATACTGAATGTATCCG.....................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0
..............................................................................................................................................CGTATACTGAATGTATCCC.....................................................................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0
...............................................................................................................................................GTATACTGAATGTATCCTGAA..................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0
............................................................................................................................................TACGTATACTGAATGTATCCTG....................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................................TATACCTTCAGTATACGTAAGC..............................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0
....................................................................................................................................................................................TACCTTCAGTATACGTAACACGA...........................................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0
..............................................................................................................................................CGTATACTGAATGTATCCTGAGA.................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................................TATACCTTCAGTATACGTAA................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................................................GGTATACCTTCAGTATACGTAAC...............................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................ACGTATACTGAATGTATCCTGAC..................................................................................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0
..............................................................................................................................................CGTATACTGAATGTATCC......................................................................................................	18	1	1.00	1	0	0	1	0	0	0	0	0	0	0
.............................................................................................................................................ACGTATACTGAATGTATCCTGACA.................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	1
.............................................................................................................................................ACGTATACTGAATGTATCCTGGT..................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................GTATACTGAATGTATCCTGAAC.................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	1
.............................................................................................................................................ACGTATACTGAATGTATCCTGAG..................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................CGTATACTGAATGTATCCTGAG..................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................CGTATACTGAATGTATCCTGACC.................................................................................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0
..............................................................................................................................................CGTATACTGAATGTATCCTGATA.................................................................................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0
...............................................................................................................................................................................CGGTATACCTTCAGTATACGC..................................................................	21	1	1.00	1	0	0	0	1	0	0	0	0	0	0
................................................................................................................................................TATACTGAATGTATCCTGAAA.................................................................................................	21	3	0.67	2	0	0	1	0	0	0	0	0	1	0
.............................................................................................................................................ACGTATACTGAATGTATCCTAT...................................................................................................	22	2	0.50	1	0	0	1	0	0	0	0	0	0	0

droPer2

C----------CACATCTGCGGATCCT----TTCG------------ACTGCA----TTCGTAATT-TTCTTTC------------AG-C----GGTTAT---------G---T--AGGATGAACCTGTGCGACTTCGTATACGTATACTGAATGTATCCTGAGTGTATCCTATCCGGTATACCTTCAGTATACGTAACACGAGGAAACACCAGCAACGCGGGATATGTCGAACTG---------------AATTTAAACG-	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
.............................................................................................................................................ACGTATACTGAATGTATCCTGA...................................................................................................	22	1	266.00	266	91	128	46	0	1	0
.............................................................................................................................................ACGTATACTGAATGTATCCTG....................................................................................................	21	1	115.00	115	18	91	5	1	0	0
..............................................................................................................................................CGTATACTGAATGTATCCTGA...................................................................................................	21	1	10.00	10	2	8	0	0	0	0
.............................................................................................................................................ACGTATACTGAATGTATCCTGG...................................................................................................	22	1	9.00	9	8	1	0	0	0	0
..............................................................................................................................................CGTATACTGAATGTATCCTG....................................................................................................	20	1	8.00	8	0	8	0	0	0	0
.............................................................................................................................................ACGTATACTGAATGTATCC......................................................................................................	19	1	6.00	6	5	0	1	0	0	0
..............................................................................................................................................CGTATACTGAATGTATCCTGAT..................................................................................................	22	1	5.00	5	5	0	0	0	0	0
.............................................................................................................................................ACGTATACTGAATGTATCCT.....................................................................................................	20	1	5.00	5	0	3	2	0	0	0
.............................................................................................................................................ACGTATACTGAATGTATCCTGT...................................................................................................	22	1	3.00	3	2	1	0	0	0	0
.............................................................................................................................................ACGTATACTGAATGTATC.......................................................................................................	18	1	2.00	2	1	1	0	0	0	0
..................................................................................................................................................................................TATACCTTCAGTATACGTAAC...............................................................	21	1	2.00	2	0	2	0	0	0	0
.............................................................................................................................................ACGTATACTGAATGTATCCTGAA..................................................................................................	23	1	2.00	2	1	0	1	0	0	0
..............................................................................................................................................CGTATACTGAATGTATCCTGG...................................................................................................	21	1	2.00	2	2	0	0	0	0	0
...............................................................................................................................................GTATACTGAATGTATCCTGAT..................................................................................................	21	1	1.00	1	0	1	0	0	0	0
...............................................................................................................................................................................CGGTATACCTTCAGTATACG...................................................................	20	1	1.00	1	0	1	0	0	0	0
.................................................................................................................................................ATACTGAATGTATCCTGA...................................................................................................	18	1	1.00	1	0	1	0	0	0	0
..................................................................................................................................................................................TATACCTTCAGTATACGTAACA..............................................................	22	1	1.00	1	0	1	0	0	0	0
............................................................................................................................................TACGTATACTGAATGTATCCTG....................................................................................................	22	1	1.00	1	1	0	0	0	0	0
...............................................................................................................................................GTATACTGAATGTATCCTT....................................................................................................	19	1	1.00	1	0	1	0	0	0	0
..............................................................................................................................................CGTATACTGAATGTATCCTGAG..................................................................................................	22	1	1.00	1	0	1	0	0	0	0
..................................................................................................................................................................................TATACCTTCAGTATACGTAACT..............................................................	22	1	1.00	1	0	1	0	0	0	0
...............................................................................................................................................GTATACTGAATGTATCCTGA...................................................................................................	20	1	1.00	1	0	1	0	0	0	0
...................................................................................................................................................................................ATACCTTCAGTATACGTAAC...............................................................	20	1	1.00	1	0	0	1	0	0	0
.............................................................................................................................................ACGTATACTGAATGTATCCTGAG..................................................................................................	23	1	1.00	1	0	1	0	0	0	0
..............................................................................................................................................CGTATACTGAATGTATCCTGAC..................................................................................................	22	1	1.00	1	0	1	0	0	0	0

droAna3

T----------TGCAGCACTAGAAC----------------------------------------------------------------------ATTAC---------GGAGG--ATGGTGATTTTGTGCAACTTCGTATACGTATACTGAATGTATCCTGAGTGTATCCTATCCGGTATACCTTCAGTATACGTAACACGAGGTAACACCTTCAACGCGGGACGTG----------------------------------	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
.............................................................................................................................................ACGTATACTGAATGTATCCTGA...................................................................................................	22	1	744.00	744	636	91	14	2	1	0
.............................................................................................................................................ACGTATACTGAATGTATCCTG....................................................................................................	21	1	507.00	507	499	3	3	0	0	2
..............................................................................................................................................CGTATACTGAATGTATCCTGA...................................................................................................	21	1	64.00	64	63	1	0	0	0	0
..............................................................................................................................................CGTATACTGAATGTATCCTG....................................................................................................	20	1	48.00	48	48	0	0	0	0	0
.............................................................................................................................................ACGTATACTGAATGTATCCT.....................................................................................................	20	1	35.00	35	28	5	1	0	0	1
.............................................................................................................................................ACGTATACTGAATGTATCC......................................................................................................	19	1	32.00	32	3	29	0	0	0	0
..................................................................................................................................................................................TATACCTTCAGTATACGTAAC...............................................................	21	1	12.00	12	0	12	0	0	0	0
..................................................................................................................................................................................TATACCTTCAGTATACGTAACT..............................................................	22	1	9.00	9	0	9	0	0	0	0
.............................................................................................................................................ACGTATACTGAATGTATCCTGT...................................................................................................	22	1	7.00	7	6	0	0	1	0	0
..................................................................................................................................................................................TATACCTTCAGTATACGTAACC..............................................................	22	1	5.00	5	0	5	0	0	0	0
..................................................................................................................................................................................TATACCTTCAGTATACGTAACA..............................................................	22	1	5.00	5	0	4	1	0	0	0
.............................................................................................................................................ACGTATACTGAATGTATC.......................................................................................................	18	1	5.00	5	0	5	0	0	0	0
.............................................................................................................................................ACGTATACTGAATGTATCCTGAA..................................................................................................	23	1	4.00	4	3	1	0	0	0	0
.............................................................................................................................................ACGTATACTGAATGTATCCTGAT..................................................................................................	23	1	4.00	4	4	0	0	0	0	0
...............................................................................................................................................GTATACTGAATGTATCCTG....................................................................................................	19	1	4.00	4	4	0	0	0	0	0
...............................................................................................................................................................................CGGTATACCTTCAGTATACGTAAC...............................................................	24	1	3.00	3	0	3	0	0	0	0
.............................................................................................................................................ACGTATACTGAATGTATCCTGG...................................................................................................	22	1	3.00	3	3	0	0	0	0	0
..............................................................................................................................................CGTATACTGAATGTATCCT.....................................................................................................	19	1	3.00	3	3	0	0	0	0	0
...............................................................................................................................................................................CGGTATACCTTCAGTATACGTA.................................................................	22	1	2.00	2	1	0	1	0	0	0
.............................................................................................................................................ACGTATACTGAATGTATCCTGC...................................................................................................	22	1	2.00	2	1	1	0	0	0	0
..............................................................................................................................................CGTATACTGAATGTATCCTGAC..................................................................................................	22	1	1.00	1	0	1	0	0	0	0
.............................................................................................................................................ACGTATACTGAATGTATCCTGAGG.................................................................................................	24	1	1.00	1	1	0	0	0	0	0
..............................................................................................................................................CGTATACTGAATGTATCC......................................................................................................	18	1	1.00	1	0	1	0	0	0	0
................................................................................................................................................TATACTGAATGTATCCTGA...................................................................................................	19	1	1.00	1	1	0	0	0	0	0
.............................................................................................................................................ACGTATACTGAATGTATCCC.....................................................................................................	20	1	1.00	1	0	1	0	0	0	0
.............................................................................................................................................ACGTATACTGAATGTATCCTA....................................................................................................	21	1	1.00	1	1	0	0	0	0	0
..............................................................................................................................................CGTATACTGAATGTATCCTGAGT.................................................................................................	23	1	1.00	1	1	0	0	0	0	0
..............................................................................................................................................CGTATACTGAATGTATCCTGAG..................................................................................................	22	1	1.00	1	0	1	0	0	0	0
.............................................................................................................................................ACGTATACTGAATGTATCCTGAC..................................................................................................	23	1	1.00	1	0	1	0	0	0	0
.............................................................................................................................................ACGTATACTGAATGTATCCTGAGT.................................................................................................	24	1	1.00	1	1	0	0	0	0	0
.................................................................................................................................................ATACTGAATGTATCCTGA...................................................................................................	18	1	1.00	1	1	0	0	0	0	0
.............................................................................................................................................ACGTATACTGAATGTATCCTGAG..................................................................................................	23	1	1.00	1	1	0	0	0	0	0
..............................................................................................................................................CGTATACTGAATGTATCCTGAT..................................................................................................	22	1	1.00	1	1	0	0	0	0	0
...............................................................................................................................................................................CGGTATACCTTCAGTATACGT..................................................................	21	1	1.00	1	0	1	0	0	0	0
...............................................................................................................................................................................CGGTATACCTTCAGTATACGTAACT..............................................................	25	1	1.00	1	0	1	0	0	0	0
...............................................................................................................................................GTATACTGAATGTATCCTGA...................................................................................................	20	1	1.00	1	1	0	0	0	0	0
...............................................................................................................................................GTATACTGAATGTATCCTGATG.................................................................................................	22	1	1.00	1	1	0	0	0	0	0
..............................................................................................................................................CGTATACTGAATGTATCCTGAA..................................................................................................	22	1	1.00	1	0	1	0	0	0	0
.............................................................................................................................................ACGTATACTGAATGTATCCTGACA.................................................................................................	24	1	1.00	1	1	0	0	0	0	0
................................................................................................................................................TATACTGAATGTATCCTGAAA.................................................................................................	21	3	0.33	1	1	0	0	0	0	0

droBip1

C----------TATCTTACCAGA------------------------------------------------------------------A----AATTAC---------GATGG--ATGGTGATTTTGTGCAACTTCGTATACGTATACTGAATGTATCCTGAGTGTATCCTATCCGGTATACCTTCAGTATACGTAACACGAGGAAACACTTTCAACGCGGGACGTG--AAA-ACTTTGTTTTA--GAAATATTTCAAAC-	Size	Hit Count	Total Norm	Total
No Reads

droKik1

C----------TGCAA--------------------------C------TGCAG------TCCTTT-T----TCGTGTCCTTTATAAG-C----ACTTGC---------GGATG--ATGATGACTCTGTGCAACTTCGTATACGTATACTGAATGTATCCTGAGTGTATCCTATCCGGTATACCTTCAGTATACGTAACACGAGGAAACACAAGCAACGCGGGATGTG----------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droFic1

TTATCTCAATCTGCA--------------------------TCACGAACTGCAGCGACACGTC--T-T----TC------------AGTC----ACTTTCGC------CGGATTTCATAGTGATTGTGTGCGACCTCGTAAACGTATACTGAATGTATCCTGAGTGTATCCTATCCGGTATACCTTCAGTATACGTAACACGAGGAAGCACGAGCAACGCGGGATGTG----------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droEle1

C----------TGCA--------------------------TCTGCAACTGCATC-------------------------------GT-C----ACTTTC---------GGATT--ATGGTGATTCTGTGCGACCTCGTAAACGTATACTGAATGTATCCTGAGTGTATCCTATCCGGTATACCTTCAGTATACGTAACACGAGGAAGCACGAGCAACGCGGGATGTG----------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droRho1

C----------TTCA--------------------------TCTGCAACTGCAGCGACGCATCCTG-T----TT------------GG-C----ACTTTC---------GGATT--ATGGTGATTCTGTGCGACCTCGTAAACGTATACTGAATGTATCCTGAGTGTATCCTATCCGGTATACCTTCAGTATACGTAACACGAGGAAGCACGAGCAACGCGGGATGTG----------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droBia1

C----------TGCAG--------------------------------------CGGCGCATCTTT-C----TC------------GG-C----ACTTTT---------GGATT--ATGGTGATTCTGTGCGACCTCGTAAACGTATACTGAATGTATCCTGAGTGTATCCTATCCGGTATACCTTCAGTATACGTAACACGAGGAAGCACGAGCAACGCGGGATGTG----------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droTak1

C----------TGCA--------------------------CCTGGAACTGCAGCGGCGCATCCTTCT----TT------------GG-C----ACTTTT---------GGATT--ATGGTGATTCTGTGCGACCTCGTAAACGTATACTGAATGTATCCTGAGTGTATCCTATCCGGTATACCTTCAGTATACGTAACACGAGGAAGCACGAGCAACGTGGGATGTG--AAACACTTTTCTTTT----TAAAACTCGACG-	Size	Hit Count	Total Norm	Total
No Reads

droEug1

T----------TAAATCTG--GATTTCATCGCTTGGCTGCATCTGGAACTGC------ACTTCATT-T----TG------------GT-C----ACTTTC---------GGATT--ATAGTGATTGTGTGCGACCTCGTAAACGTATACTGAATGTATCCTGAGTGTATCCTATCCGGTATACCTTCAGTATACGTAACACGAGGAAGCACGAGCAACGTGGGATGTG--AAACAGTTT----------------ACTTTA-	Size	Hit Count	Total Norm	Total
No Reads

dm3

C----------TGCA--------------------------TTTGGATCCGCGACGACGCATAATT-T----TC------------AG-C----ACTTTT---------GAATA--ATGGCGATTCTGTGCGACCTCGTAAACGTATACTGAATGTATCCTGAGTGTATCCTATCCGGTATACCTTCAGTATACGTAACACGAGAGAGCACTAACAACGTGGGATGTG--AAACACTTT----------------TTAAGA-	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
.............................................................................................................................................ACGTATACTGAATGTATCCTGA...................................................................................................	22	1	15921.00	15921	0	0	0	0	3	1	2	32	93	37	2	4	2	0	0	0	0	0	0	0	1	2	0	5	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	1	4	17	1	7	0	2	2	0	6	15	3	0	0	0	0	962	1051	200	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	1	2	1219	193	2277	3330	91	0	1	47	33	110	5	11	65	5	36	110	86	74	66	234	48	10	1	0	2	7	11	9	8	59	727	142	0	200	0	3	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	18	20	47	7	4	0	3	6	4	10	63	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	23	26	0	16	0	0	11	43	1	6	1	24	0	49	0	0	0	0	0	0	36	2	1	1	0	0	0	0	4	0	0	7	0	0	0	0	0	3	2	0	0	0	0	0	0	0	0	0	91	339	29	27	22	54	209	1681	11	40	9	124	1	0	0	1	1	1	0	0	475	216	0	2	0	0	0	0	0	9	0	0	3	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	4	0	12	0	15	3	13	0	0	0	0	0	0	0	0	0	140	194	3	6	0	0	5	24	0	2	0	0	0	0	0	0	2	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	2	2	3	0	0	0	0	0	0	0	11
.............................................................................................................................................ACGTATACTGAATGTATCCTGAG..................................................................................................	23	1	928.00	928	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	441	420	57	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................ACGTATACTGAATGTATCCTG....................................................................................................	21	1	707.00	707	0	0	0	0	0	0	0	0	2	3	1	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	6	1	0	0	0	0	2	0	0	2	2	1	0	1	0	1	2	0	1	0	0	0	29	26	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	15	1	78	90	1	0	0	1	0	9	0	0	3	0	1	3	8	9	5	25	0	2	0	0	0	0	0	0	0	2	6	3	0	3	0	2	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	4	1	1	0	0	0	0	0	0	1	24	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	4	2	0	8	0	0	6	17	2	2	0	4	0	2	2	0	0	0	0	0	4	2	0	0	2	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	10	2	11	3	1	23	76	2	2	1	12	0	0	0	0	0	0	0	0	19	26	0	0	0	0	0	0	0	2	0	0	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	1	2	1	12	2	1	0	0	0	0	0	0	0	0	0	8	18	1	1	0	0	2	0	0	0	2	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	2	0	0	0	0	0	0
...............................................................................................................................................................................CGGTATACCTTCAGTATACGTAA................................................................	23	1	701.00	701	0	0	0	0	0	0	1	5	6	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	11	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	188	14	116	138	33	0	0	3	5	22	1	1	6	0	1	1	3	2	14	16	0	3	0	0	0	1	3	1	1	7	51	4	1	15	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	11	0	0	0	1	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5
...............................................................................................................................................................................CGGTATACCTTCAGTATACGTA.................................................................	22	1	578.00	578	0	0	0	0	0	0	2	3	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	129	14	44	112	10	0	0	10	3	17	0	2	15	1	8	9	4	4	9	16	4	3	0	0	2	0	1	0	1	8	41	5	0	31	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	1	1	4	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	8	30	0	1	0	7	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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..............................................................................................................................................CGTATACTGAATGTATCCTGATA.................................................................................................	23	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................TACCTTCAGTATACGTAA................................................................	18	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................ACGTATACTGAATGTATCCTAG...................................................................................................	22	1	2.00	2	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................ACGTATACTGAATGTATCCTA....................................................................................................	21	1	2.00	2	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................ACGTATACTGAATGTATCCTGCA..................................................................................................	23	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................GTATACTGAATGTATCCTG....................................................................................................	19	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................GTATACTGAATGTATCCTGAAC.................................................................................................	22	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................ACGTATACTGAATGTATCCTGAAC.................................................................................................	24	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

C----------TGCA--------------------------TCTAGATCCGCGACACGGCATAATT-T----TC------------AG-C----ACTTTT---------GGATA--ATGGCGATTCTGTGCGACCTCGTAAACGTATACTGAATGTATCCTGAGTGTATCCTATCCGGTATACCTTCAGTATACGTAACACGAGATAGCACGAGCAACGTGGGATGTG----------------------------------	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
.............................................................................................................................................ACGTATACTGAATGTATCCTGA...................................................................................................	22	1	3761.00	3761	6	19	871	140	137	103	38	24	822	1303	34	130	43	86	2	0	3
.............................................................................................................................................ACGTATACTGAATGTATCCTG....................................................................................................	21	1	467.00	467	3	18	236	75	22	7	1	1	27	36	10	24	0	5	0	0	2
.............................................................................................................................................ACGTATACTGAATGTATCCTGG...................................................................................................	22	1	205.00	205	3	3	199	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................ACGTATACTGAATGTATCC......................................................................................................	19	1	137.00	137	0	3	69	0	39	25	0	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................ACGTATACTGAATGTATCCT.....................................................................................................	20	1	95.00	95	1	2	6	1	23	10	8	5	13	15	6	4	0	1	0	0	0
.............................................................................................................................................ACGTATACTGAATGTATCCTGAA..................................................................................................	23	1	32.00	32	0	1	19	0	0	0	0	1	3	3	0	0	2	2	0	1	0
.............................................................................................................................................ACGTATACTGAATGTATC.......................................................................................................	18	1	32.00	32	0	1	16	0	4	5	0	0	0	0	6	0	0	0	0	0	0
...............................................................................................................................................................................CGGTATACCTTCAGTATACGTA.................................................................	22	1	26.00	26	0	0	0	0	5	1	0	0	1	1	0	1	3	14	0	0	0
..............................................................................................................................................CGTATACTGAATGTATCCTGA...................................................................................................	21	1	20.00	20	0	0	0	10	0	0	0	0	3	7	0	0	0	0	0	0	0
..............................................................................................................................................CGTATACTGAATGTATCCTGAT..................................................................................................	22	1	13.00	13	0	0	5	0	0	0	0	0	3	3	0	2	0	0	0	0	0
..................................................................................................................................................................................TATACCTTCAGTATACGTAACA..............................................................	22	1	12.00	12	0	0	0	0	0	0	0	0	2	7	0	3	0	0	0	0	0
..............................................................................................................................................CGTATACTGAATGTATCCTGAA..................................................................................................	22	1	12.00	12	0	0	4	0	0	0	0	0	4	2	0	0	0	2	0	0	0
..............................................................................................................................................CGTATACTGAATGTATCCTG....................................................................................................	20	1	11.00	11	0	1	1	8	0	0	0	0	0	1	0	0	0	0	0	0	0
...............................................................................................................................................................................CGGTATACCTTCAGTATACGTAAC...............................................................	24	1	11.00	11	0	0	4	0	3	2	0	0	1	0	0	1	0	0	0	0	0
..................................................................................................................................................................................TATACCTTCAGTATACGTAAC...............................................................	21	1	7.00	7	0	0	4	1	0	0	0	0	1	0	0	1	0	0	0	0	0
.....................................................................................................................................................TGAATGTATCCTGAGTA................................................................................................	17	3	6.67	20	0	0	0	0	0	0	9	11	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................CGGTATACCTTCAGTATACG...................................................................	20	1	6.00	6	0	0	0	1	3	1	0	0	0	0	0	0	0	1	0	0	0
...............................................................................................................................................................................CGGTATACCTTCAGTATACGTAA................................................................	23	1	6.00	6	0	0	0	0	0	0	0	0	1	2	1	1	0	1	0	0	0
.............................................................................................................................................ACGTATACTGAATGTATCCTGAT..................................................................................................	23	1	6.00	6	0	0	3	1	0	0	1	0	0	1	0	0	0	0	0	0	0
...................................................................................................................................................ACTGAATGTATCCTGA...................................................................................................	16	1	5.00	5	0	0	0	0	0	0	0	0	1	1	3	0	0	0	0	0	0
...............................................................................................................................................................................CGGTATACCTTCAGTATACGT..................................................................	21	1	5.00	5	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0
...........................................................................................................................................AAACGTATACTGAATGTATCCT.....................................................................................................	22	1	5.00	5	0	0	1	1	0	0	0	0	0	1	0	2	0	0	0	0	0
.............................................................................................................................................ACGTATACTGAATGTATCCTGC...................................................................................................	22	1	4.00	4	0	0	0	0	0	0	0	0	1	3	0	0	0	0	0	0	0
.................................................................................................................................................ATACTGAATGTATCCTGA...................................................................................................	18	1	4.00	4	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0
.....................................................................................................................................................TGAATGTATCCTGAGT.................................................................................................	16	3	3.33	10	0	0	0	0	0	0	5	5	0	0	0	0	0	0	0	0	0
.............................................................................................................................................ACGTATACTGAATGTATCCTGAG..................................................................................................	23	1	3.00	3	0	0	0	0	2	1	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................ACGTATACTGAATGTATCCTGT...................................................................................................	22	1	3.00	3	0	0	0	0	0	0	0	0	0	1	1	1	0	0	0	0	0
.............................................................................................................................................ACGTATACTGAATGT..........................................................................................................	15	1	3.00	3	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0
..............................................................................................................................................CGTATACTGAATGTATCCTGAC..................................................................................................	22	1	3.00	3	0	0	1	1	0	0	0	0	0	0	0	1	0	0	0	0	0
...........................................................................................................................................AAACGTATACTGAATGTATCCTG....................................................................................................	23	1	3.00	3	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................CGGTATACCTTCAGTATAC....................................................................	19	1	3.00	3	0	0	1	1	1	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................CGGTATACCTTCAGTATA.....................................................................	18	1	3.00	3	0	0	0	0	1	2	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................ATACCTTCAGTATACGT..................................................................	17	1	2.00	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
.............................................................................................................................................ACGTATACTGAATGTATCCTGAAC.................................................................................................	24	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................AACGTATACTGAATGTATCCTG....................................................................................................	22	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................TATACCTTCAGTATACGTAACT..............................................................	22	1	2.00	2	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0
...............................................................................................................................................GTATACTGAATGTATCCTGA...................................................................................................	20	1	2.00	2	0	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0
..............................................................................................................................................CGTATACTGAATGTATCCT.....................................................................................................	19	1	2.00	2	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................GGTATACCTTCAGTATACG...................................................................	19	1	2.00	2	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................CGTATACTGAATGTATCCTGAAA.................................................................................................	23	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................ACGTATACTGAATGTATCCGA....................................................................................................	21	1	2.00	2	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0
.............................................................................................................................................ACGTATACTGAATGTATCCTGAAA.................................................................................................	24	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................GAATGTATCCTGAGT.................................................................................................	15	3	1.67	5	0	0	0	0	0	0	2	3	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................TGAATGTATCCTGAG..................................................................................................	15	3	1.67	5	0	0	0	0	0	0	3	2	0	0	0	0	0	0	0	0	0
.............................................................................................................................................ACGTATACTGAATGTATCCTGAC..................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
...................................................................................................................................................................................ATACCTTCAGTATACGTAA................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...............................................................................................................................................................................CGGTATACCTTCAGT........................................................................	15	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
................................................................................................................................................TATACTGAATGTATCCTG....................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
................................................................................................................................................................................GGTATACCTTCAGTATACGTA.................................................................	21	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................ACGTATACTGAATGTA.........................................................................................................	16	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.............................................................................................................................................ACGTATACTGAATGTATCCTGAGGCG...............................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...................................................................................................................................................................................ATACCTTCAGTATACGTAACA..............................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................TATACTGAATGTATCCTGAAA.................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
.............................................................................................................................................ACGTATACTGAATGTATCCTGACA.................................................................................................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................TATACTGAATGTATCCTGATA.................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
....................................................................................................................................................................................TACCTTCAGTATACGTA.................................................................	17	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.............................................................................................................................................ACGTATACTGAATGTATCT......................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
..............................................................................................................................................CGTATACTGAATGTATCC......................................................................................................	18	1	1.00	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................ACGTATACTGAATGTATCCTA....................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................CGTATACTGAATGTATCCTGGT..................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
.............................................................................................................................................ACGTATACTGAATGTATCCTGAGT.................................................................................................	24	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................CGTATACTGAATGTATCCTGG...................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................AATGTATCCTGAGTA................................................................................................	15	10	0.90	9	0	0	0	0	0	0	3	6	0	0	0	0	0	0	0	0	0
...................................................................................................................................................ACTGAATGTATCCTG....................................................................................................	15	2	0.50	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
................................................................................................................................................TATACTGAATGTATCCTGAAAA................................................................................................	22	2	0.50	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
......................................................................................................................................................GAATGTATCCTGAGTA................................................................................................	16	4	0.50	2	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0
.............................................................................................................................................ACGTATACTGAATGTATTGA.....................................................................................................	20	9	0.11	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
......................................................................................................................................................GAATGTATCCTGAGTAC...............................................................................................	17	12	0.08	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0

droSec2

C----------TGCA--------------------------TCTAGATCCGCGACACGGCATAATT-T----TC------------AG-C----ACTTTT---------GGATA--ATGGCGATTCTGTGCGACCTCGTAAACGTATACTGAATGTATCCTGAGTGTATCCTATCCGGTATACCTTCAGTATACGTAACACGAGATAGCACGAGCAACGTGGGATGTG--AAACACTTT-----T----TAAT--ACATCT-	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
.............................................................................................................................................ACGTATACTGAATGTATCCTGA...................................................................................................	22	1	859.00	859	378	3	477	1
.............................................................................................................................................ACGTATACTGAATGTATCCTG....................................................................................................	21	1	247.00	247	223	1	23	0
..............................................................................................................................................CGTATACTGAATGTATCCTGA...................................................................................................	21	1	57.00	57	52	0	5	0
.............................................................................................................................................ACGTATACTGAATGTATCCT.....................................................................................................	20	1	23.00	23	16	1	6	0
..............................................................................................................................................CGTATACTGAATGTATCCTG....................................................................................................	20	1	22.00	22	22	0	0	0
.............................................................................................................................................ACGTATACTGAATGTATCCTGAT..................................................................................................	23	1	9.00	9	3	0	6	0
..............................................................................................................................................CGTATACTGAATGTATCCTGAT..................................................................................................	22	1	9.00	9	3	0	6	0
...............................................................................................................................................................................CGGTATACCTTCAGTATACGTA.................................................................	22	1	8.00	8	7	0	1	0
.............................................................................................................................................ACGTATACTGAATGTATCC......................................................................................................	19	1	6.00	6	3	0	3	0
...............................................................................................................................................................................CGGTATACCTTCAGTATACGT..................................................................	21	1	5.00	5	0	0	5	0
...............................................................................................................................................................................CGGTATACCTTCAGTATACG...................................................................	20	1	5.00	5	4	0	1	0
.............................................................................................................................................ACGTATACTGAATGTATCCTGT...................................................................................................	22	1	4.00	4	3	0	1	0
..................................................................................................................................................................................TATACCTTCAGTATACGTAAC...............................................................	21	1	4.00	4	3	0	1	0
..................................................................................................................................................................................TATACCTTCAGTATACGTAACA..............................................................	22	1	4.00	4	1	1	2	0
.............................................................................................................................................ACGTATACTGAATGTATCCTT....................................................................................................	21	1	3.00	3	3	0	0	0
.............................................................................................................................................ACGTATACTGAATGTATC.......................................................................................................	18	1	3.00	3	0	0	3	0
..................................................................................................................................................................................TATACCTTCAGTATACGTAACT..............................................................	22	1	3.00	3	3	0	0	0
...............................................................................................................................................................................CGGTATACCTTCAGTATACGTAAC...............................................................	24	1	2.00	2	1	0	1	0
...............................................................................................................................................GTATACTGAATGTATCCTGA...................................................................................................	20	1	2.00	2	1	0	1	0
..............................................................................................................................................CGTATACTGAATGTATCCT.....................................................................................................	19	1	2.00	2	2	0	0	0
...........................................................................................................................................AAACGTATACTGAATGTATCCT.....................................................................................................	22	1	2.00	2	0	0	2	0
.............................................................................................................................................ACGTATACTGAATGTATCCTC....................................................................................................	21	1	2.00	2	2	0	0	0
.............................................................................................................................................ACGTATACTGAATGTATCCTGAC..................................................................................................	23	1	1.00	1	1	0	0	0
...............................................................................................................................................GTATACTGAATGTATCCTG....................................................................................................	19	1	1.00	1	1	0	0	0
.............................................................................................................................................ACGTATACTGAATGTATCCTGG...................................................................................................	22	1	1.00	1	1	0	0	0
.............................................................................................................................................ACGTATACTGAATGTATCCTGAAG.................................................................................................	24	1	1.00	1	0	0	1	0
.............................................................................................................................................ACGTATACTGAATGTATCCTGAA..................................................................................................	23	1	1.00	1	1	0	0	0
............................................................................................................................................AACGTATACTGAATGTATCCTG....................................................................................................	22	1	1.00	1	1	0	0	0
...............................................................................................................................GTGCGACCTCGTAAACGTA....................................................................................................................	19	1	1.00	1	0	0	1	0
..............................................................................................................................................CGTATACTGAATGTATCCTGAGT.................................................................................................	23	1	1.00	1	0	0	1	0
..............................................................................................................................................CGTATACTGAATGTATCCTGAA..................................................................................................	22	1	1.00	1	1	0	0	0
.............................................................................................................................................ACGTATACTGAATGTATCCTGC...................................................................................................	22	1	1.00	1	1	0	0	0
...........................................................................................................................................AAACGTATACTGAATGTATCCTGT...................................................................................................	24	1	1.00	1	0	0	1	0
..............................................................................................................................................................................................................AGCACGAGCAACGTGGGATGTG--................................	22	1	1.00	1	0	0	1	0
.............................................................................................................................................ACGTATACTGAATGTATCCTGAG..................................................................................................	23	1	1.00	1	0	0	1	0
...............................................................................................................................................................................CGGTATACCTTCAGTATACGTAA................................................................	23	1	1.00	1	1	0	0	0
.................................................................................................................................................ATACTGAATGTATCCTGA...................................................................................................	18	1	1.00	1	0	0	1	0
..............................................................................................................................................CGTATACTGAATGTATCCTGAG..................................................................................................	22	1	1.00	1	0	0	1	0
................................................................................................................................................TATACTGAATGTATCCTGA...................................................................................................	19	1	1.00	1	0	0	1	0
................................................................................................................................................................................GGTATACCTTCAGTATACGTA.................................................................	21	1	1.00	1	1	0	0	0
...................................................................................................................................................................................ATACCTTCAGTATACGTAACA..............................................................	21	1	1.00	1	0	0	1	0
..............................................................................................................................................CGTATACTGAATGTATCCTGG...................................................................................................	21	1	1.00	1	1	0	0	0

droYak3

C----------CACA--------------------------TCTCGATCCGCGACGACGCGTAATT-T----TC------------AG-C----ACTTTT---------GGACT--AAGGCGATTCTGTGCGACCTCGTAAACGTATACTGAATGTATCCTGAGTGTATCCTATCCGGTATACCTTCAGTATACGTAACACGAGAAAGCACGAGCAACGTGGGATGTG----------------------------------	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
.............................................................................................................................................ACGTATACTGAATGTATCCTGA...................................................................................................	22	1	4354.00	4354	2	282	3921	130	0	0	0	3	0	16	0
.............................................................................................................................................ACGTATACTGAATGTATCC......................................................................................................	19	1	496.00	496	0	2	493	0	0	0	0	0	0	1	0
.............................................................................................................................................ACGTATACTGAATGTATCCTG....................................................................................................	21	1	412.00	412	0	287	108	13	0	1	0	1	0	2	0
...........................................................................................................................................AAACGTATACTGAATGTATCCT.....................................................................................................	22	1	95.00	95	0	0	94	1	0	0	0	0	0	0	0
..............................................................................................................................................CGTATACTGAATGTATCCTGA...................................................................................................	21	1	79.00	79	0	44	34	1	0	0	0	0	0	0	0
.............................................................................................................................................ACGTATACTGAATGTATCCT.....................................................................................................	20	1	75.00	75	0	22	38	2	0	0	0	2	0	11	0
..................................................................................................................................................................................TATACCTTCAGTATACGTAACAC.............................................................	23	1	65.00	65	0	0	65	0	0	0	0	0	0	0	0
.............................................................................................................................................ACGTATACTGAATGTATC.......................................................................................................	18	1	47.00	47	0	0	45	1	0	0	0	0	0	1	0
..................................................................................................................................................................................TATACCTTCAGTATACGTAAC...............................................................	21	1	35.00	35	0	0	34	1	0	0	0	0	0	0	0
.............................................................................................................................................ACGTATACTGAATGTATCCTGAA..................................................................................................	23	1	35.00	35	0	2	33	0	0	0	0	0	0	0	0
..............................................................................................................................................CGTATACTGAATGTATCCTG....................................................................................................	20	1	29.00	29	0	27	1	1	0	0	0	0	0	0	0
...........................................................................................................................................AAACGTATACTGAATGTATCCC.....................................................................................................	22	1	28.00	28	0	0	28	0	0	0	0	0	0	0	0
...........................................................................................................................................AAACGTATACTGAATGTATCC......................................................................................................	21	1	22.00	22	0	0	22	0	0	0	0	0	0	0	0
..................................................................................................................................................................................TATACCTTCAGTATACGTAACT..............................................................	22	1	21.00	21	0	0	21	0	0	0	0	0	0	0	0
.............................................................................................................................................ACGTATACTGAATGTATCCTGAT..................................................................................................	23	1	18.00	18	0	0	16	2	0	0	0	0	0	0	0
..............................................................................................................................................CGTATACTGAATGTATCCTGAT..................................................................................................	22	1	17.00	17	0	0	11	6	0	0	0	0	0	0	0
..............................................................................................................................................CGTATACTGAATGTATCCTGAA..................................................................................................	22	1	15.00	15	0	0	14	1	0	0	0	0	0	0	0
...............................................................................................................................................................................CGGTATACCTTCAGTATACGTAAC...............................................................	24	1	14.00	14	0	0	14	0	0	0	0	0	0	0	0
.............................................................................................................................................ACGTATACTGAATGTATCCTGC...................................................................................................	22	1	13.00	13	0	0	12	0	0	0	0	0	0	1	0
..................................................................................................................................................................................TATACCTTCAGTATACGTAACC..............................................................	22	1	11.00	11	0	0	11	0	0	0	0	0	0	0	0
.............................................................................................................................................ACGTATACTGAATGTATCCTGAC..................................................................................................	23	1	10.00	10	0	1	8	1	0	0	0	0	0	0	0
.............................................................................................................................................ACGTATACTGAATGTATCCC.....................................................................................................	20	1	10.00	10	0	0	10	0	0	0	0	0	0	0	0
..................................................................................................................................................................................TATACCTTCAGTATACGTAACA..............................................................	22	1	9.00	9	0	3	5	1	0	0	0	0	0	0	0
..............................................................................................................................................CGTATACTGAATGTATCCTGAC..................................................................................................	22	1	8.00	8	0	0	8	0	0	0	0	0	0	0	0
...............................................................................................................................................................................CGGTATACCTTCAGTATACGTA.................................................................	22	1	8.00	8	0	0	6	1	0	0	0	0	0	1	0
...............................................................................................................................................................................CGGTATACCTTCAGTATACGT..................................................................	21	1	8.00	8	0	2	4	2	0	0	0	0	0	0	0
...............................................................................................................................................................................CGGTATACCTTCAGTATACG...................................................................	20	1	6.00	6	0	3	3	0	0	0	0	0	0	0	0
.............................................................................................................................................ACGTATACTGAATGTA.........................................................................................................	16	1	6.00	6	0	0	0	0	0	0	0	0	0	6	0
...............................................................................................................................................GTATACTGAATGTATCCTGA...................................................................................................	20	1	6.00	6	0	4	2	0	0	0	0	0	0	0	0
..............................................................................................................................................CGTATACTGAATGTATCCTGACC.................................................................................................	23	1	5.00	5	0	0	5	0	0	0	0	0	0	0	0
.............................................................................................................................................ACGTATACTGAATGTATCCTGG...................................................................................................	22	1	5.00	5	2	1	2	0	0	0	0	0	0	0	0
.............................................................................................................................................ACGTATACTGAATGT..........................................................................................................	15	1	3.00	3	0	0	0	0	0	0	0	0	0	3	0
.............................................................................................................................................ACGTATACTGAATGTATCCTGT...................................................................................................	22	1	3.00	3	0	2	1	0	0	0	0	0	0	0	0
...........................................................................................................................................AAACGTATACTGAATGTATCCTG....................................................................................................	23	1	3.00	3	0	0	3	0	0	0	0	0	0	0	0
.............................................................................................................................................ACGTATACTGAATGTATCCTGAGT.................................................................................................	24	1	3.00	3	0	0	2	1	0	0	0	0	0	0	0
.............................................................................................................................................ACGTATACTGAATGTATCCTT....................................................................................................	21	1	2.00	2	0	1	1	0	0	0	0	0	0	0	0
............................................................................................................................................AACGTATACTGAATGTATCCTG....................................................................................................	22	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0
..............................................................................................................................................CGTATACTGAATGTATCC......................................................................................................	18	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0
................................................................................................................................................TATACTGAATGTATCCTGA...................................................................................................	19	1	2.00	2	0	1	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................................TATACCTTCAGTATACGTAACACT............................................................	24	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0
...............................................................................................................................................................................CGGTATACCTTCAGTATACGTAACT..............................................................	25	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0
.............................................................................................................................................ACGTATACTGAATGTATCCTA....................................................................................................	21	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0
..............................................................................................................................................CGTATACTGAATGTATCCTGATA.................................................................................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................TATACTGAATGTATCCTGAA..................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................TAAACGTATACTGAATGTATCC......................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................ACGTATACTGAATGTATCCTGAAA.................................................................................................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................GTATACTGAATGTATCCTG....................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
...........................................................................................................................................AAACGTATACTGAATGTATC.......................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................AACGTATACTGAATGTATCCT.....................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................GTATACTGAATGTATCCTGAG..................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.............................................................................................................................................ACGTATACTGAATGTATCCTGAGTGTATC............................................................................................	29	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................ACGTATACTGAATGTATCCTC....................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................ACGTATACTGAATGTATCT......................................................................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................ATACTGAATGTATCCTGA...................................................................................................	18	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................ATACCTTCAGTATACGTAACAC.............................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................CGTATACTGAATGTATCCT.....................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..............................................................................................................................................CGTATACTGAATGTATCCTGACA.................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.................................................................................................................................................ATACTGAATGTATCCTGAGTGTATCCT..........................................................................................	27	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................ACGTATACTGAATGTATCCTGAGGCC...............................................................................................	26	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................ACGTATACTGAATGTATCCTGAG..................................................................................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................CGGTATACCTTCAGTATACGTAC................................................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................CGTATACTGAATGTATCCTGTT..................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................TATACTGAATGTATCCTG....................................................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..................................................................................................................................................TACTGAATGTATCCTGAT..................................................................................................	18	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................GTATACTGAATGTATCCTGATC.................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................CGTATACTGAATGTATCCTGAGA.................................................................................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................AAACGTATACTGAATGTATCCTGA...................................................................................................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0

droEre2

C----------TGCA--------------------------TCTGGATCCGCGACGACGTATAATT-T----TC------------AG-C----ACTTTT---------GGATT--AAGGCGATTCTGTGCGACCTCGTAAACGTATACTGAATGTATCCTGAGTGTATCCTATCCGGTATACCTTCAGTATACGTAACACGAGAAAGCACGAGCAACGTGGGATGTG----------------------------------	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
.............................................................................................................................................ACGTATACTGAATGTATCCTGA...................................................................................................	22	1	1839.00	1839	1431	324	0	77	5	2	0
.............................................................................................................................................ACGTATACTGAATGTATCCTG....................................................................................................	21	1	645.00	645	618	15	0	8	3	1	0
..............................................................................................................................................CGTATACTGAATGTATCCTGA...................................................................................................	21	1	144.00	144	135	8	0	1	0	0	0
..............................................................................................................................................CGTATACTGAATGTATCCTG....................................................................................................	20	1	56.00	56	56	0	0	0	0	0	0
.............................................................................................................................................ACGTATACTGAATGTATCC......................................................................................................	19	1	34.00	34	2	31	0	0	1	0	0
.............................................................................................................................................ACGTATACTGAATGTATCCT.....................................................................................................	20	1	31.00	31	23	4	0	2	1	1	0
...........................................................................................................................................AAACGTATACTGAATGTATCCT.....................................................................................................	22	1	15.00	15	2	11	0	2	0	0	0
..................................................................................................................................................................................TATACCTTCAGTATACGTAACA..............................................................	22	1	10.00	10	3	5	0	2	0	0	0
.............................................................................................................................................ACGTATACTGAATGTATCCTGAA..................................................................................................	23	1	8.00	8	8	0	0	0	0	0	0
..................................................................................................................................................................................TATACCTTCAGTATACGTAACAC.............................................................	23	1	8.00	8	0	8	0	0	0	0	0
.............................................................................................................................................ACGTATACTGAATGTATCCTT....................................................................................................	21	1	8.00	8	7	0	0	1	0	0	0
.............................................................................................................................................ACGTATACTGAATGTATCCTGT...................................................................................................	22	1	8.00	8	5	3	0	0	0	0	0
...............................................................................................................................................GTATACTGAATGTATCCTGA...................................................................................................	20	1	8.00	8	8	0	0	0	0	0	0
..................................................................................................................................................................................TATACCTTCAGTATACGTAAC...............................................................	21	1	8.00	8	0	8	0	0	0	0	0
...............................................................................................................................................................................CGGTATACCTTCAGTATACG...................................................................	20	1	5.00	5	5	0	0	0	0	0	0
.............................................................................................................................................ACGTATACTGAATGTATCCTGAT..................................................................................................	23	1	5.00	5	4	1	0	0	0	0	0
.............................................................................................................................................ACGTATACTGAATGTATCCTGG...................................................................................................	22	1	4.00	4	3	0	0	1	0	0	0
...............................................................................................................................................................................CGGTATACCTTCAGTATACGTA.................................................................	22	1	4.00	4	4	0	0	0	0	0	0
...............................................................................................................................................GTATACTGAATGTATCCTG....................................................................................................	19	1	3.00	3	3	0	0	0	0	0	0
...............................................................................................................................................................................CGGTATACCTTCAGTATACGTAAC...............................................................	24	1	2.00	2	0	2	0	0	0	0	0
..............................................................................................................................................CGTATACTGAATGTATCCT.....................................................................................................	19	1	2.00	2	2	0	0	0	0	0	0
.................................................................................................................................................ATACTGAATGTATCCTGA...................................................................................................	18	1	2.00	2	1	1	0	0	0	0	0
................................................................................................................................................TATACTGAATGTATCCTGA...................................................................................................	19	1	2.00	2	2	0	0	0	0	0	0
...........................................................................................................................................AAACGTATACTGAATGTATCC......................................................................................................	21	1	2.00	2	0	2	0	0	0	0	0
.............................................................................................................................................ACGTATACTGAATGTATC.......................................................................................................	18	1	2.00	2	0	2	0	0	0	0	0
...................................................................................................................................................................................ATACCTTCAGTATACGTAACAC.............................................................	22	1	2.00	2	0	2	0	0	0	0	0
................................................................................................................................................................................GGTATACCTTCAGTATACG...................................................................	19	1	2.00	2	2	0	0	0	0	0	0
...........................................................................................................................................AAACGTATACTGAATGTATCCTC....................................................................................................	23	1	1.00	1	0	0	0	1	0	0	0
.............................................................................................................................................ACGTATACTGAATGTATCCTGAC..................................................................................................	23	1	1.00	1	1	0	0	0	0	0	0
.............................................................................................................................................ACGTATACTGAATGTATCCTGAG..................................................................................................	23	1	1.00	1	1	0	0	0	0	0	0
................................................................................................................................................TATACTGAATGTATCCTG....................................................................................................	18	1	1.00	1	1	0	0	0	0	0	0
................................................................................................................................................TATACTGAATGTATCCTGAAA.................................................................................................	21	1	1.00	1	1	0	0	0	0	0	0
..............................................................................................................................................CGTATACTGAATGTATCCTGACA.................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0
....................................................................................................................................................................................TACCTTCAGTATACGTAACT..............................................................	20	1	1.00	1	1	0	0	0	0	0	0
..........................................................................................................................................TAAACGTATACTGAATGTATCC......................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0
...........................................................................................................................................AAACGTATACTGAATGTATCCC.....................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0
...........................................................................................................................................AAACGTATACTGAATGTATCCTGA...................................................................................................	24	1	1.00	1	1	0	0	0	0	0	0
...............................................................................................................................................................................CGGTATACCTTCAGTATA.....................................................................	18	1	1.00	1	0	0	0	0	1	0	0
..............................................................................................................................................CGTATACTGAATGTATCCTGAG..................................................................................................	22	1	1.00	1	1	0	0	0	0	0	0
...............................................................................................................................................GTATACTGAATGTATCCTGAA..................................................................................................	21	1	1.00	1	1	0	0	0	0	0	0
.....................................................................................................................................................................................ACCTTCAGTATACGTAACA..............................................................	19	1	1.00	1	0	1	0	0	0	0	0
....................................................................................................................................................................................TACCTTCAGTATACGTAAC...............................................................	19	1	1.00	1	0	1	0	0	0	0	0
...................................................................................................................................................................................ATACCTTCAGTATACGTAAC...............................................................	20	1	1.00	1	1	0	0	0	0	0	0
..............................................................................................................................................CGTATACTGAATGTATCCTGT...................................................................................................	21	1	1.00	1	1	0	0	0	0	0	0
.............................................................................................................................................ACGTATACTGAATGTATCCTGAGTA................................................................................................	25	1	1.00	1	1	0	0	0	0	0	0
..............................................................................................................................................CGTATACTGAATGTATCC......................................................................................................	18	1	1.00	1	0	1	0	0	0	0	0
.............................................................................................................................................ACGTATACTGAATGTATCCTGC...................................................................................................	22	1	1.00	1	1	0	0	0	0	0	0
...............................................................................................................................................................................CGGTATACCTTCAGTATACGT..................................................................	21	1	1.00	1	0	0	0	1	0	0	0
...............................................................................................................................................GTATACTGAATGTATCCTGATA.................................................................................................	22	1	1.00	1	1	0	0	0	0	0	0
..............................................................................................................................................CGTATACTGAATGTATCCTGAA..................................................................................................	22	1	1.00	1	1	0	0	0	0	0	0
..................................................................................................................................................................................TATACCTTCAGTATACGTAACT..............................................................	22	1	1.00	1	0	1	0	0	0	0	0
..............................................................................................................................................CGTATACTGAATGTATCCTGAT..................................................................................................	22	1	1.00	1	1	0	0	0	0	0	0
..............................................................................................................................................................................CCGGTATACCTTCAGTATACGTAAC...............................................................	25	1	1.00	1	0	1	0	0	0	0	0
.............................................................................................................................................ACGTATACTGAATGTATCCC.....................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0
.............................................................................................................................................ACGTATACTGAATGTATCCTC....................................................................................................	21	1	1.00	1	1	0	0	0	0	0	0
.............................................................................................................................................ACGTATACTGAATGTATCTG.....................................................................................................	20	2	0.50	1	1	0	0	0	0	0	0

dgr-mir-iab-4

scaffold_14906:12815119-12815186 +

Known

Unknown

antisense_to_3pUTR

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-30.5	-30.3	-29.9