ID:

dgr-mir-9c

 Coordinate:

scaffold_14978:830214-830302 +

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intron

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-25.8 -25.6 -25.6

Flybase annnotation

intron [Dgri\GH25199-in]; pre_miRNA [Dgri\mir-9c-RM]; utr5 [utr5_plus_2208]; miRNA [Dgri\miR-9c-RA]

No Repeatable elements found

Sense Strand Reads

TTTTTGTCTTAACTATATAGTTAGTACCACACACAATTGCAATTTCTTTCATTTTTGCTGTTTCTTTGGTATTCTAGCTGTAGATTGTTTCTATATCTTGTATCATCTAAAGCTTTTATACCAAAGCTCCAGCTTAAATTGCTTGCCACCGCCTGCACCCCGCCACCAACAGCAACAGCAACAAAAACA

***********************************************...((((..((((...(((((((((...((((.(((((.((.............)).))))).))))...)))))))))...))))..))))....********************************************** 		Read size # Mismatch Hit Count Total Norm Total V109

male body		 M041

female body
..............................................................TCTTTGGTATTCTAGCTGTAG.......................................................................................................... 21 0 1 11451.00 11451 6729 4722
..............................................................TCTTTGGTATTCTAGCTGTAGA......................................................................................................... 22 0 1 3941.00 3941 1750 2191
...............................................................CTTTGGTATTCTAGCTGTAG.......................................................................................................... 20 0 1 399.00 399 8 391
..............................................................TCTTTGGTATTCTAGCTGTA........................................................................................................... 20 0 1 195.00 195 64 131
...............................................................CTTTGGTATTCTAGCTGTAGA......................................................................................................... 21 0 1 188.00 188 2 186
..............................................................TCTTTGGTATTCTAGCTGTAGAT........................................................................................................ 23 0 1 109.00 109 30 79
...........................................................................................................TAAAGCTTTTATACCAAAGCT............................................................. 21 0 1 102.00 102 0 102
..............................................................TCTTTGGTATTCTAGCTCTAG.......................................................................................................... 21 1 1 77.00 77 76 1
..............................................................TCTTTGGTATTCTAGCTATAG.......................................................................................................... 21 1 1 70.00 70 70 0
...........................................................................................................TAAAGCTTTTATACCAAAGCTC............................................................ 22 0 1 62.00 62 1 61
..............................................................TCTTTGGTATTCTAGCTTTAG.......................................................................................................... 21 1 1 55.00 55 55 0
..............................................................TCTTTGGTATTCTAGCTGT............................................................................................................ 19 0 1 48.00 48 13 35
..............................................................TCTTTGGTATTCTAGCTGTAGT......................................................................................................... 22 1 1 45.00 45 24 21
..............................................................TCTTTGGTATTCTAGCTGTAGAA........................................................................................................ 23 1 1 38.00 38 12 26
................................................................TTTGGTATTCTAGCTGTAG.......................................................................................................... 19 0 1 36.00 36 9 27
................................................................TTTGGTATTCTAGCTGTAGA......................................................................................................... 20 0 1 33.00 33 10 23
..............................................................TCTTTGGTATTCTAGCTCTAGA......................................................................................................... 22 1 1 26.00 26 25 1
..............................................................TCTTTGGTCTTCTAGCTGTAG.......................................................................................................... 21 1 1 24.00 24 24 0
..............................................................TCTTTGCTATTCTAGCTGTAG.......................................................................................................... 21 1 1 22.00 22 22 0
..............................................................TCCTTGGTATTCTAGCTGTAG.......................................................................................................... 21 1 1 20.00 20 20 0
..............................................................TCTTTCGTATTCTAGCTGTAG.......................................................................................................... 21 1 1 16.00 16 16 0
..............................................................TCTTTGGTATTCTAGCTGCAG.......................................................................................................... 21 1 1 15.00 15 14 1
..............................................................TCTTTGGTATTCTAGCTATAGA......................................................................................................... 22 1 1 14.00 14 14 0
.............................................................CTCTTTGGTATTCTAGCTGTAG.......................................................................................................... 22 1 1 13.00 13 6 7
..............................................................TCTTTGGTTTTCTAGCTGTAG.......................................................................................................... 21 1 1 13.00 13 13 0
..............................................................TCTTTAGTATTCTAGCTGTAG.......................................................................................................... 21 1 1 12.00 12 12 0
..............................................................TCTTTGTTATTCTAGCTGTAG.......................................................................................................... 21 1 1 12.00 12 11 1
...............................................................TCTTGGTATTCTAGCTGTAG.......................................................................................................... 20 2 1 11.00 11 11 0
..............................................................TCTTTGGTATTCTAGCTGTAGATT....................................................................................................... 24 0 1 11.00 11 7 4
................................................................TTTGGTATTCTAGCTGTAGAT........................................................................................................ 21 0 1 11.00 11 8 3
..............................................................TCTTTGGTATCCTAGCTGTAG.......................................................................................................... 21 1 1 11.00 11 9 2
..............................................................TCTTCGGTATTCTAGCTGTAG.......................................................................................................... 21 1 1 10.00 10 9 1
..............................................................TCTTTGGTATTCTAGCTGTAT.......................................................................................................... 21 1 1 10.00 10 6 4
..............................................................TCTTTGATATTCTAGCTGTAG.......................................................................................................... 21 1 1 10.00 10 10 0
..............................................................TCTTTGGTATTCTAGCCGTAG.......................................................................................................... 21 1 1 10.00 10 6 4
............................................................................................................AAAGCTTTTATACCAAAGCT............................................................. 20 0 1 9.00 9 0 9
..............................................................TCTTTTGTATTCTAGCTGTAG.......................................................................................................... 21 1 1 9.00 9 7 2
................................................................TTTGGTATTCTAGCTGTAGATT....................................................................................................... 22 0 1 9.00 9 6 3
..............................................................TCTTTGGCATTCTAGCTGTAG.......................................................................................................... 21 1 1 9.00 9 7 2
..............................................................TCTTTGGTACTCTAGCTGTAG.......................................................................................................... 21 1 1 9.00 9 7 2
..............................................................TCTTTGGTATTCTAGCTGTAGG......................................................................................................... 22 1 1 9.00 9 1 8
...............................................................CTTTGGTATTCTAGCTGTAGAT........................................................................................................ 22 0 1 8.00 8 0 8
.................................................................TTGGTATTCTAGCTGTAG.......................................................................................................... 18 0 1 8.00 8 1 7
..............................................................TATTTGGTATTCTAGCTGTAG.......................................................................................................... 21 1 1 8.00 8 7 1
..............................................................TCTTTGGCATTCTAGCTGTAGA......................................................................................................... 22 1 1 8.00 8 7 1
..............................................................TCTTTGGTATTCTAGATGTAG.......................................................................................................... 21 1 1 7.00 7 7 0
..............................................................TCTTTGATATTCTAGCTGTAGA......................................................................................................... 22 1 1 7.00 7 7 0
.............................................................TTCTTTGGTATTCTAGCTGTAG.......................................................................................................... 22 0 1 7.00 7 0 7
..............................................................TCTTTGGTATTCTATCTGTAG.......................................................................................................... 21 1 1 7.00 7 6 1
..............................................................TCATTGGTATTCTAGCTGTAG.......................................................................................................... 21 1 1 7.00 7 7 0
..............................................................TCTTTGGTATTCTAGCTGTAA.......................................................................................................... 21 1 1 7.00 7 3 4
..............................................................TCTTTGGTGTTCTAGCTGTAG.......................................................................................................... 21 1 1 7.00 7 7 0
..............................................................TCTTCGGTATTCTAGCTGTAGA......................................................................................................... 22 1 1 6.00 6 6 0
..............................................................TCTTTGGTATTCTAGCTGTAGAG........................................................................................................ 23 1 1 6.00 6 2 4
..............................................................TCTTTGGTATTCTAGCTTTAGA......................................................................................................... 22 1 1 6.00 6 6 0
..............................................................TCTTTGGTATTCTAGCTGTCG.......................................................................................................... 21 1 1 6.00 6 5 1
..............................................................TCTTTGGTATTCTAGCTGTAC.......................................................................................................... 21 1 1 6.00 6 4 2
..............................................................TCTTTGGTATTCTACCTGTAG.......................................................................................................... 21 1 1 6.00 6 6 0
..............................................................TCCTTGGTATTCTAGCTGTAGA......................................................................................................... 22 1 1 5.00 5 4 1
..............................................................TCTTTGGTATTCTAGCTGTAGC......................................................................................................... 22 1 1 5.00 5 2 3
..............................................................TCTTTGGTATTCTAGCTG............................................................................................................. 18 0 1 5.00 5 0 5
..............................................................TCTTTCGTATTCTAGCTGTAGA......................................................................................................... 22 1 1 5.00 5 5 0
.............................................................TTCTTTGGTATTCTAGCTGTAGA......................................................................................................... 23 0 1 5.00 5 0 5
..............................................................TCTTTAGTATTCTAGCTGTAGA......................................................................................................... 22 1 1 5.00 5 5 0
...............................................................CTTTGGTATTCTAGCTGTA........................................................................................................... 19 0 1 5.00 5 0 5
..............................................................TCTTTGGTACTCTAGCTGTAGA......................................................................................................... 22 1 1 5.00 5 4 1
...............................................................CTTTGGTATTCTAGCTGTAGAA........................................................................................................ 22 1 1 4.00 4 0 4
..............................................................TCATTGGTATTCTAGCTGTAGA......................................................................................................... 22 1 1 4.00 4 4 0
.............................................................GTCTTTGGTATTCTAGCTGTAG.......................................................................................................... 22 1 1 4.00 4 0 4
.........................................................................................................TCTAAAGCTTTTATACCAAAGCT............................................................. 23 0 1 4.00 4 0 4
..............................................................TCTTTGGTATTCTAGGTGTAG.......................................................................................................... 21 1 1 4.00 4 2 2
.............................................................ATCTTTGGTATTCTAGCTGTAG.......................................................................................................... 22 1 1 4.00 4 0 4
..............................................................CCTTTGGTATTCTAGCTGTAG.......................................................................................................... 21 1 1 4.00 4 3 1
..............................................................TCGTTGGTATTCTAGCTGTAG.......................................................................................................... 21 1 1 4.00 4 4 0
..............................................................TCTTTGGTCTTCTAGCTGTAGA......................................................................................................... 22 1 1 4.00 4 4 0
..............................................................TCTTTGGTATTCTAGCTGCAGA......................................................................................................... 22 1 1 4.00 4 3 1
..............................................................TCTTTGGTATTCTGGCTGTAGA......................................................................................................... 22 1 1 4.00 4 2 2
..............................................................TCTTTGGTGTTCTAGCTGTAGA......................................................................................................... 22 1 1 4.00 4 4 0
..............................................................TCTTTGGTATTCTCGCTGTAG.......................................................................................................... 21 1 1 3.00 3 3 0
..............................................................TCTTTGCTATTCTAGCTGTAGA......................................................................................................... 22 1 1 3.00 3 3 0
..............................................................TCTTTGGTATTCTAGCTAG............................................................................................................ 19 2 1 3.00 3 3 0
..............................................................TCTTTTGTATTCTAGCTGTAGA......................................................................................................... 22 1 1 3.00 3 3 0
............................................................................................................AAAGCTTTTATACCAAAGCTC............................................................ 21 0 1 3.00 3 0 3
..............................................................TCTTTGGTATTATAGCTGTAG.......................................................................................................... 21 1 1 3.00 3 3 0
..............................................................TCTTTGGTATTCTAGCTGAAG.......................................................................................................... 21 1 1 3.00 3 2 1
...............................................................CTTTGGTATTCTAGCTGTAGT......................................................................................................... 21 1 1 3.00 3 0 3
...............................................................CTTTGGTATTCTAGCTGTAGATT....................................................................................................... 23 0 1 3.00 3 0 3
..............................................................TCTTTGTTATTCTAGCTGTAGA......................................................................................................... 22 1 1 3.00 3 2 1
..............................................................TCTTTGGTATTCTAGCTGTAGTT........................................................................................................ 23 1 1 3.00 3 1 2
..............................................................TCTTTGGTATTCCAGCTGTAGA......................................................................................................... 22 1 1 3.00 3 2 1
..............................................................TCGTTGGTATTCTAGCTGTAGA......................................................................................................... 22 1 1 3.00 3 3 0
..............................................................TCTTTGGAATTCTAGCTGTAG.......................................................................................................... 21 1 1 3.00 3 3 0
..............................................................TCTTTGGTATTCTAGTTGTAG.......................................................................................................... 21 1 1 3.00 3 2 1
.................................................................TTGGTATTCTAGCTGTAGA......................................................................................................... 19 0 1 3.00 3 0 3
..............................................................TCTTTGGTATTCTAGCTGTGG.......................................................................................................... 21 1 1 2.00 2 2 0
.............................................................................................................AAGCTTTTATACCAAAGCTC............................................................ 20 0 1 2.00 2 0 2
..............................................................TCTTTGGTTTTCTAGCTGTAGA......................................................................................................... 22 1 1 2.00 2 2 0
..............................................................TCTTTGGTATTCTAGCTGTT........................................................................................................... 20 1 1 2.00 2 1 1
...........................................................................................................TAAAGCTTTTATACCAAAGC.............................................................. 20 0 1 2.00 2 0 2
..............................................................TCTTTGGTATTCTAGATGTAGA......................................................................................................... 22 1 1 2.00 2 2 0
..............................................................TCTTTGGTATTCTAGCAGTAG.......................................................................................................... 21 1 1 2.00 2 2 0
..............................................................TCTTTGGTATTCTAGCCGTAGA......................................................................................................... 22 1 1 2.00 2 2 0
..............................................................TCTTTGGTATTCTAGCTGTAGAAT....................................................................................................... 24 1 1 2.00 2 0 2
...............................................................CTTTGGTATTCTAGCTGTAT.......................................................................................................... 20 1 1 2.00 2 0 2
..............................................................TCTTTGGTATTTTAGCTGTAG.......................................................................................................... 21 1 1 2.00 2 2 0
..............................................................TCATTGGTATTCTCGCTGTAG.......................................................................................................... 21 2 1 2.00 2 2 0
..............................................................TCTTTGGTATTCCAGCTGTAG.......................................................................................................... 21 1 1 2.00 2 2 0
..............................................................TCTTTGGTATTCTGGCTGTAG.......................................................................................................... 21 1 1 2.00 2 2 0
..............................................................TCTTTGGTATTCTAGCTGTACA......................................................................................................... 22 1 1 2.00 2 2 0
..............................................................TCTTTGGTATTCTAGCTAGA........................................................................................................... 20 2 1 2.00 2 2 0
............................................................AATCTTTGGTATTCTAGCTGTAG.......................................................................................................... 23 2 1 2.00 2 0 2
.............................................................CTCTTTGGTATTCTAGCTGTAGA......................................................................................................... 23 1 1 2.00 2 1 1
..................................................................TGGTATTCTAGCTGTAGA......................................................................................................... 18 0 1 2.00 2 0 2
..............................................................TCTTTGGTATTCTAGCTGTGGA......................................................................................................... 22 1 1 2.00 2 1 1
..............................................................TCTTTGGTATTCTAGCTGTAGAAA....................................................................................................... 24 2 1 2.00 2 1 1
..............................................................TCCTTGGTATTCTAGCTTTAG.......................................................................................................... 21 2 1 2.00 2 2 0
..............................................................TCTTTGGTATTCTATCTGTAGA......................................................................................................... 22 1 1 2.00 2 0 2
............................................................TCTCTTTGGTATTCTAGCTGTAG.......................................................................................................... 23 1 1 2.00 2 0 2
..............................................................TCTTTGGTATTCTAGCTGTATA......................................................................................................... 22 1 1 2.00 2 0 2
..............................................................TCTCTGGTATTCTAGCTGTAGA......................................................................................................... 22 1 1 2.00 2 2 0
..............................................................TCTTAGGTATTCTAGCTGTAGA......................................................................................................... 22 1 1 2.00 2 2 0
..............................................................TCTTTGGTATTCTAGCTATAGAT........................................................................................................ 23 1 1 1.00 1 1 0
.......................................................................................................CTACTAAAGCTTTTATACCAAAGCTC............................................................ 26 2 1 1.00 1 0 1
..............................................................TCTTTGGTATTCTAGCTGTAGAAAT...................................................................................................... 25 3 1 1.00 1 0 1
...............................................................CTTTGGCATTCTAGCTGTAGATTT...................................................................................................... 24 2 1 1.00 1 1 0
.............................................................ATCTTTGGTATTCTAGCTGTAGA......................................................................................................... 23 1 1 1.00 1 0 1
..............................................................TCTTTGGTATTCTAGCTGTAGTATT...................................................................................................... 25 3 1 1.00 1 0 1
..............................................................TCTTTGGTATTCTAGCTGTAGATG....................................................................................................... 24 1 1 1.00 1 0 1
..............................................................TCTTTGGTATACTAGCTGTAGA......................................................................................................... 22 1 1 1.00 1 1 0
............................................................CGTCTTTGGTATTCTAGCTGTAG.......................................................................................................... 23 2 1 1.00 1 0 1
..............................................................TCTTTGATATTCTAGCTTTAG.......................................................................................................... 21 2 1 1.00 1 1 0
..............................................................TCCTTGGTATTCTAGCTGTA........................................................................................................... 20 1 1 1.00 1 1 0
..............................................................TCTTTGGTATCCTAGCTGTAGA......................................................................................................... 22 1 1 1.00 1 0 1
..............................................................TCTTTGGGATTCTAGCTGTAGA......................................................................................................... 22 1 1 1.00 1 0 1
..............................................................TCTTTGGTATTCTAGCTGTAGGA........................................................................................................ 23 2 1 1.00 1 0 1
..............................................................TCTTTGGTATTCTAGTTCTAG.......................................................................................................... 21 2 1 1.00 1 1 0
..............................................................TCTTTGGTATCCTAGCTTTAGA......................................................................................................... 22 2 1 1.00 1 1 0
..............................................................TCTTTGGTATTCTAGCTGTAGCGA....................................................................................................... 24 3 1 1.00 1 0 1
..............................................................TCTTTGGTATTCTAGCTGTAGAGGGTTC................................................................................................... 28 3 1 1.00 1 0 1
..............................................................TCTTTGGTATTCAAGCTGTAG.......................................................................................................... 21 1 1 1.00 1 1 0
..............................................................TCTTTGGTATTCTAGCTCTAGAT........................................................................................................ 23 1 1 1.00 1 1 0
..............................................................TCTTTGGTATTTTAGCTGTAGA......................................................................................................... 22 1 1 1.00 1 1 0
..............................................................TCTTTGGTATTGTAGCTGTAG.......................................................................................................... 21 1 1 1.00 1 1 0
..............................................................TCTTTGGTATTCTAGCTGGAG.......................................................................................................... 21 1 1 1.00 1 0 1
...............................................................CTTTGGTATTCTAGCTGCAGA......................................................................................................... 21 1 1 1.00 1 1 0
................................................................................................CTTGTATCATCTAAAGCTT.......................................................................... 19 0 1 1.00 1 0 1
................................................................TTTTGTATTCTAGCTGTAG.......................................................................................................... 19 1 1 1.00 1 0 1
.............................................................TTCTTTGGTATTCTAGCTGT............................................................................................................ 20 0 1 1.00 1 0 1
..............................................................TATTTGGTATTCTAGCTGTAA.......................................................................................................... 21 2 1 1.00 1 1 0
..............................................................TCTTAGGTATTCTAGCTGTAG.......................................................................................................... 21 1 1 1.00 1 1 0
................................................................TTTGGGATTCTAGCTGTAGATT....................................................................................................... 22 1 1 1.00 1 1 0
..............................................................TCTTTGGTGTTCTAGCTGTAGAA........................................................................................................ 23 2 1 1.00 1 1 0
.............................................................CTCTTTAGTATTCTAGCTGTAG.......................................................................................................... 22 2 1 1.00 1 1 0
...............................................................TCTTGGTATTCTAGCTGTAGA......................................................................................................... 21 2 1 1.00 1 1 0
...............................................................CTTTGGTATTCTAGCTGTAGC......................................................................................................... 21 1 1 1.00 1 0 1
...........................................................................................................TAAAGCTTTTATACCAAAGCTCT........................................................... 23 1 1 1.00 1 0 1
..........................................................................................................CTAAAGCTTTTATACCAAAGCT............................................................. 22 0 1 1.00 1 0 1
..............................................................TCCTTGGTCTTCTAGCTGTAGA......................................................................................................... 22 2 1 1.00 1 1 0
..............................................................TCTTTGGTAATCTAGCTGTAG.......................................................................................................... 21 1 1 1.00 1 1 0
...............................................................CTTTGGTATTCTAGCTGTAGGG........................................................................................................ 22 2 1 1.00 1 0 1
...............................................................CTTTGCTATTCTAGCTGTAG.......................................................................................................... 20 1 1 1.00 1 0 1
...............................................................ATTTGGTATTCTAGCTGTAG.......................................................................................................... 20 1 1 1.00 1 0 1
..............................................................TCTTTGGTATTCTCGCTATAGA......................................................................................................... 22 2 1 1.00 1 1 0
..............................................................TCTTTAGTATTCTAGCTGTA........................................................................................................... 20 1 1 1.00 1 1 0
..............................................................TCTTTGGTATTCTAGCTGTAGATAA...................................................................................................... 25 2 1 1.00 1 0 1
..............................................................TCTTTGGTATTCTAGCTGTAGGG........................................................................................................ 23 2 1 1.00 1 0 1
...............................................................CTTTGGTATTCTAGCTGGAG.......................................................................................................... 20 1 1 1.00 1 1 0
..............................................................TCTTTGGTATTCTAGCTGTAGTAAG...................................................................................................... 25 3 1 1.00 1 0 1
..............................................................TCTTTGGTATTCTAGCTGTAGATC....................................................................................................... 24 1 1 1.00 1 0 1
..............................................................TCGTTGGTATTCTACCTGTAG.......................................................................................................... 21 2 1 1.00 1 1 0
..............................................................TCTTTGGTATCCTAGCTATAG.......................................................................................................... 21 2 1 1.00 1 1 0
................................................................TTTGGTGTTCTAGCTGTAGAT........................................................................................................ 21 1 1 1.00 1 1 0
..............................................................TCTTTGGTATTCTAGCTGTG........................................................................................................... 20 1 1 1.00 1 1 0
...........................................................................................................TAAAGCTTTTATACCAAAGCTT............................................................ 22 1 1 1.00 1 0 1
..............................................................TCTTTGTTATTCTAGCTGTAGT......................................................................................................... 22 2 1 1.00 1 1 0
..............................................................TCTTGGGTATTCTAGCTGTAG.......................................................................................................... 21 1 1 1.00 1 1 0
..............................................................TCTTCGGTATTCTAGCTGTA........................................................................................................... 20 1 1 1.00 1 1 0
..............................................................TCTTTGGTATTCTAGCTGTTG.......................................................................................................... 21 1 1 1.00 1 1 0
.......................................................................................................TACCTAAAGCTTTTATACCAAAGCT............................................................. 25 2 1 1.00 1 0 1
..............................................................TCTTTGGTACTCTAGCTATAG.......................................................................................................... 21 2 1 1.00 1 1 0
..............................................................TCTTTGGTATTCTAGCTGTAGTCT....................................................................................................... 24 2 1 1.00 1 0 1
..........................................................................................................TTAAAGCTTTTATACCAAAGCT............................................................. 22 1 1 1.00 1 0 1
..............................................................TCTTTGGAATTCTAGCTGTAGA......................................................................................................... 22 1 1 1.00 1 0 1
..............................................................TCTTTGGTATTCTAGCTGTAGACA....................................................................................................... 24 2 1 1.00 1 0 1
..............................................................TCTTTGGTATTCTAGCTGTAGGCG....................................................................................................... 24 3 1 1.00 1 0 1
...........................................................................................................TAAAGCTTTTATACCGAAGCTC............................................................ 22 1 1 1.00 1 0 1
..............................................................TCTCTGGTATTCTAGCTGTAA.......................................................................................................... 21 2 1 1.00 1 1 0
..............................................................TATTTGGTCTTCTAGCTGTAGA......................................................................................................... 22 2 1 1.00 1 1 0
..............................................................TCTTTGGTATACTAGCTGTAG.......................................................................................................... 21 1 1 1.00 1 1 0
..............................................................TCTTTGGTAATCTAGCTGT............................................................................................................ 19 1 2 1.00 2 2 0
..........................................................................................................ATAAAGCTTTTATACCAAAGCT............................................................. 22 1 1 1.00 1 0 1
..............................................................TCTTTGGTATTCTAGCTATA........................................................................................................... 20 1 1 1.00 1 1 0
..............................................................TCGTTGGTATTCTAGCTTTAG.......................................................................................................... 21 2 1 1.00 1 1 0
..............................................................TGTTTGGTATTCTAGCTGTAGA......................................................................................................... 22 1 1 1.00 1 1 0
..............................................................TCTTTGGTATTCTAGCTGTAGATAT...................................................................................................... 25 2 1 1.00 1 0 1
..............................................................CCTTTGGTATTCTAGCTATAG.......................................................................................................... 21 2 1 1.00 1 1 0
..............................................................TCTTTGGTATTCTAGCTGTTT.......................................................................................................... 21 2 1 1.00 1 1 0
...............................................................CTTTGGAATTCTAGCTGTAG.......................................................................................................... 20 1 1 1.00 1 0 1
...........................................................................................................TAAAGCTTTTATACCAAAGCTTTA.......................................................... 24 2 1 1.00 1 0 1
...............................................................TTTTGGTATTCTAGCTGTAG.......................................................................................................... 20 1 1 1.00 1 0 1
............................................................CTTCTTTGGTATTCTAGCTGTAG.......................................................................................................... 23 1 1 1.00 1 0 1
..............................................................TCTTTGGCATTCTAGCTGTA........................................................................................................... 20 1 1 1.00 1 1 0
..............................................................TCTTTGGTATTCTAGCTGTGA.......................................................................................................... 21 2 1 1.00 1 1 0
..............................................................TCTCTGGTATTCTAGCTGTAG.......................................................................................................... 21 1 1 1.00 1 1 0
..............................................................TCTTCGGTATTCTAGCTTTAG.......................................................................................................... 21 2 1 1.00 1 1 0
..............................................................TCCTTGCTATTCTAGCTGTAG.......................................................................................................... 21 2 1 1.00 1 1 0
..............................................................TCTTCGGTATTCTAGCTGTGGA......................................................................................................... 22 2 1 1.00 1 1 0
..............................................................TCTTTTGTATTCTCGCTGTAGATT....................................................................................................... 24 2 1 1.00 1 1 0
................................................................TTTGGTATTCTAGCTGTA........................................................................................................... 18 0 1 1.00 1 0 1
..............................................................TCTTTGGTATTCTAGCTGTAGTA........................................................................................................ 23 2 1 1.00 1 0 1
..............................................................TCTCTGGTATTCTAGCTGTAGTTTT...................................................................................................... 25 3 1 1.00 1 1 0
.............................................................CTCTTTGGTATTCTAGCTGTA........................................................................................................... 21 1 1 1.00 1 0 1
...............................................................CTTTGTTATTCTAGCTGTAGA......................................................................................................... 21 1 1 1.00 1 0 1
..............................................................TCTTTTGTATTCTAGCTCTAGA......................................................................................................... 22 2 1 1.00 1 1 0
..............................................................TCTTTCGTATTCTAGCTGCAGA......................................................................................................... 22 2 1 1.00 1 1 0
..............................................................GCTTTGGTATTCTAGCTGTAGA......................................................................................................... 22 1 1 1.00 1 0 1
..............................................................CCTTTGGTATTCTAGCTGTAGA......................................................................................................... 22 1 1 1.00 1 1 0
..............................................................TCTTTGGTATTCTAGCTCTA........................................................................................................... 20 1 1 1.00 1 1 0
..............................................................TCTTTGGTATTCTAGCGGTAG.......................................................................................................... 21 1 1 1.00 1 1 0
.............................................................GTCTTTGGTATTCTAGCTGTAGA......................................................................................................... 23 1 1 1.00 1 0 1
..............................................................TCTTTGGGATTCTAGCTGTAG.......................................................................................................... 21 1 1 1.00 1 0 1
..............................................................TCTTTGATATTCTAGATGTAG.......................................................................................................... 21 2 1 1.00 1 1 0
...........................................................................................................TAAAGCTTTTATACCAGAGCTC............................................................ 22 1 1 1.00 1 0 1
..............................................................TCTTTGGTATTCTAACTGTAGA......................................................................................................... 22 1 1 1.00 1 1 0
..............................................................TCTTTGTTATTCTACCTGTAGA......................................................................................................... 22 2 1 1.00 1 1 0
..............................................................TCTTTGGTATTCTAGCTGTAGAGAG...................................................................................................... 25 2 1 1.00 1 0 1
................................................................TTTGGTATTCTAGCTGTCGAT........................................................................................................ 21 1 1 1.00 1 1 0
..............................................................TCTTTGGTATTCTAGTTGTAGA......................................................................................................... 22 1 1 1.00 1 1 0
................................................................TCTTGTATTCTAGCTGTAG.......................................................................................................... 19 2 4 0.75 3 3 0
..............................................................TCTTTGGTATTCTAGCTTTT........................................................................................................... 20 2 2 0.50 1 1 0
..............................................................TCTTTGGTATTCCATCTGTAG.......................................................................................................... 21 2 2 0.50 1 1 0
..............................................................TCATTGGTATTCTAGCCGTA........................................................................................................... 20 2 2 0.50 1 1 0
..............................................................TCTTTGGTATTCTAGCCATAG.......................................................................................................... 21 2 2 0.50 1 1 0
..............................................................TGTTTGGTATTCTAGCTGTAGC......................................................................................................... 22 2 2 0.50 1 1 0
..............................................................CTTTTGGTATTCTAGCTGTAG.......................................................................................................... 21 2 2 0.50 1 1 0
...............................................................CTTTGGTATTCTAGCTGTAGCGA....................................................................................................... 23 3 2 0.50 1 0 1
..............................................................TCTTTGGGATTCTAGCTTTAG.......................................................................................................... 21 2 3 0.33 1 1 0
.............................................................TCTCTTGGTATTCTAGCTGTAG.......................................................................................................... 22 3 3 0.33 1 1 0
..............................................................TCTTTGGTATTCTAGCTTAG........................................................................................................... 20 3 13 0.23 3 3 0
..............................................................TCATTGGTATTCTAGCTAGA........................................................................................................... 20 3 5 0.20 1 1 0

Anti-sense strand reads

AAAAACAGAATTGATATATCAATCATGGTGTGTGTTAACGTTAAAGAAAGTAAAAACGACAAAGAAACCATAAGATCGACATCTAACAAAGATATAGAACATAGTAGATTTCGAAAATATGGTTTCGAGGTCGAATTTAACGAACGGTGGCGGACGTGGGGCGGTGGTTGTCGTTGTCGTTGTTTTTGT

**********************************************...((((..((((...(((((((((...((((.(((((.((.............)).))))).))))...)))))))))...))))..))))....*********************************************** 		Read size # Mismatch Hit Count Total Norm Total M041

female body
....................AATCATGATTTGTGTTAA....................................................................................................................................................... 18 2 20 0.05 1 1

Re-alignment of all predicted orthologs

Species Coordinate ID Type Alignment
droGri2 scaffold_14978:830164-830352 + dgr-mir-9c Known_mirbase -TTTTTGTC----TTA--ACTATATAG----------T---TAGT--------ACCACACACAATTGCAATTTCTTTCATTTTTGCTGTTTCTTTGGTATTCTAGCTGTAGATTGTTT-C------TATATCTTGTATCATCTAAAGCTTTTATACCAAAGCTCCAGCTTAAATTGCTTGCCACCGCCT---------GCAC--CCCGCCACCAACAG----------C-----AACAGCAACAAAAA------CA
droVir3 scaffold_12963:12863800-12863982 - dvi-mir-9c Known_mirbase -GTTTTGTC----TCA--CCCACACACACACACACACAC-A----CACACA------------A-T--------TTTCATTTTTGCTGTTTCTTTGGTATTCTAGCTGTAGATTGTTT-T------TACAGTTTGTATCATCTAAAGCTTTTATACCAAAGCTCCAGCTTAAATTGCTTGCCACCGCCC---------GCAC---CCG-------CCA---ACATCAGC-----ATCAACAAAAACAA------AG
droMoj3 scaffold_6500:7201312-7201480 + dmo-mir-9c Known_mirbase -TTTTTGTC----TCA--CCC-------------------------------------ACACAATTGCCAC-TCTTTCATTTTTGCTGTTTCTTTGGTATTCTAGCTGTAGATTGTTT-T------CACATATTGTATCATCTAAAGCTTTTATACCAAAGCTCCAGCTTAAATTGCTTGACACCGCCC-AACCGCTCGCACAATCCG-------CCA---ACAT-----------------CAGT-A------AA
droWil2 scf2_1100000004874:30484-30617 - dwi-mir-9c-1 -T------------------------------------------------------------------------------TTTTGCTGTTTCTTTGGTATTCTAGCTGTAGATTGTTT-TT---TGCACATTGTATATCATCTAAAGCTTTTATACCAAAGCTCCAGCTTAAATTGCTTGCCAACGCACCC---------------CAAAAA---CAA----------AAT--AAAATG---CAACAA------AA
dp5 4_group3:8443145-8443324 + dps-mir-9c Known_mirbase -CTCTCCCA----TTCGCTGTCTGTC---------------GACT--------TCCATGCACTTTTTGTTCTCCTTTAATTTTTGCTGTTTCTTTGGTATTCTAGCTGTAGATTGTTT-TT---TGCACATTGTATATCATCTAAAGCTTTTATACCAAAGCTCCAGCTTAAATTGCTTAACAACGCACCAA-----------------------CAA----------CA-----ACAACAACAGTAA------CT
droPer2 scaffold_1:9894310-9894449 + dpe-mir-9c Known_mirbase -T-------------------------------------------C-------------------C--------TTTAATTTTTGCTGTTTCTTTGGTATTCTAGCTGTAGATTGTTT-TT---TGCACATTGTATATCATCTAAAGCTTTTATACCAAAGCTCCAGCTTAAATTGCTTAACAACGCACCAA-----------------------CAA----------CAA--CAACAGTAACTACAG------TA
droAna3 scaffold_12916:15865436-15865580 - dan-mir-9c Known_mirbase ----------------------------------------------GCACTCC--C-------TTT--------CATTATTTTTGCTGTTTCTTTGGTATTCTAGCTGTAGATTGTTT-CA---CGCACATTGTATATCATCTAAAGCTTTTATACCAAAGCTCCAGCTTAAATTGCTTAACAACGCACCAA-----------------------CAA----------CA-----ACAACAACAACAA------CA
droBip1 scf7180000396717:104176-104353 - -TTTTTGGT----TCA--CTCTTCTCC----------TCAC----CGCACC--TCCTTCTACTTTTT-----T-CATTATTTTTGCTGTTTCTTTGGTATTCTAGCTGTAGATTGTTTTCA---CGCACATTGTATATCATCTAAAGCTTTTATACCAAAGCTCCAGCTTAAATTGCTTAACAACGCACCAC-----------------------CA-----------------AACAACAACAACAA------CA
droKik1 scf7180000302382:528738-528853 + -T-------------------------------------------CGCACTCT----------CTT--------TATCATTTTTGCTGTTTCTTTGGTATTCTAGCTGTAGATTGTTT-CAC-ACGCACATTGTATATCATCTAAAGCTTTTATACCAAAGCTCCAGCTTAAATTGCTTA----------------------------------------------------------------------------
droFic1 scf7180000454078:623507-623618 + -T-------------------------------------------CGCACT------------TCT--------TATCATTTTTGCTGTTTCTTTGGTATTCTAGCTGTAGATTGTTT-CA---CGCACATTGTATATCATCTAAAGCTTTTATACCAAAGCTACAGCTTAAATTGCTTA----------------------------------------------------------------------------
droEle1 scf7180000490579:646069-646201 - -T-------------------------------------------CGCACT------------ATT--------TATCATTTTTGCTGTTTCTTTGGTATTCTAGCTGTAGATTGTTT-CA---CGCACATTGTATATCATCTAAAGCTTTTATACCAAAGCTCCAGCTTAAATTGCTTAACAACGCACCAG-----------------------CAA------------------------CAAAA--------A
droRho1 scf7180000768553:8863-9009 + -T-------------------------------------------CGCACT------------TTT--------TATCATTTTTGCTGTTTCTTTGGTATTCTAGCTGTAGATTGTTT-CA---CGCACATTGTATATCATCTAAAGCTTTTATACCAAAGCTCCAGCTTAAATTGCTTAACAACGCACCAG-----------------------CAA----------CAA--AAACAGCCACAGGAA------TG
droBia1 scf7180000301468:857466-857620 + -T-------------------------------------------TGCACT------------ACT--------TATCATTTTTGCTGTTTCTTTGGTATTCTAGCTGTAGATTGTTT-CACGACGCACATTGTATATCATCTAAAGCTTTTATACCAAAGCTCCAGCTTAAATTGCTTAACAACGCACCAG-----------------------CTACCAACCT---C----AGACAGCCACAAATA------CA
droTak1 scf7180000415914:422145-422290 + -T--------------------------------------------GCACT------------ATT--------TATCATTTTTGCTGTTTCTTTGGTATTCTAGCTGTAGATTGTTT-CA---CGCACATTGTATATCATCTAAAGCTTTTATACCAAAGCTCCAGCTTAAATTGCTTAACAACGCACAAG-----------------------CAA----------AAACCAAACAGCCACAAAA--------A
droEug1 scf7180000408961:271825-271926 + -T-------------------------------------------TGCACT------------ATT--------TATCATTTTTGCTGTTTCTTTGGTATTCTAGCTGTAGATTGTTT-CA---CGCACATTGTATATCATCTAAAGCTTTTATACCAAAGCTCCAGCTT--------------------------------------------------------------------------------------
dm3 chr2L:16697910-16698024 + dme-mir-9c Known_mirbase -T-------------------------------------------TGCACT------------ATT--------TATCATTTTTGCTGTTTCTTTGGTATTCTAGCTGTAGATTGTTT-CA---CGCACATTGTATATCATCTAAAGCTTTTATACCAAAGCTCCAGCTTAAATTGCTTAACA-------------------------------------------------------------------------
droSim2 2l:16264673-16264857 + dsi_32480 -TTTTTTTT----TCGGTTCTTTGCTCACATTTCTCCTC-T----TGCACT------------ATT--------TATCATTTTTGCTGTTTCTTTGGTATTCTAGCTGTAGATTGTTT-CA---CGCACATTGTATATCATCTAAAGCTTTTATACCAAAGCTCCAGCTTAAATTGCTTAACAACGCACCAA-----------------------CCC----------A----AAACAGCCACAAATACAGGAATG
droSec2 scaffold_7:344855-345043 + dse-mir-9c Known_mirbase -TTTTTTTTTTTTTCGGTTCTTTGCTCACATTTCTCCTC-T----TGCACT------------ATT--------TATCATTTTTGCTGTTTCTTTGGTATTCTAGCTGTAGATTGTTT-CA---CGCACATTGTATATCATCTAAAGCTTTTATACCAAAGCTCCAGCTTAAATTGCTTAACAACGCACCAA-----------------------CCC----------A----AAACAGCCACAAATACAGGAATG
droYak3 2R:4405050-4405182 - dya-mir-9c Known_mirbase -T-------------------------------------------TGCACT------------ATT--------TATCATTTTTGCTGTTTCTTTGGTATTCTAGCTGTAGATTGTTT-CG---CGCACATTGTATATCATCTAAAGCTTTTATACCAAAGCTCCAGCTTAAATTGCTTAACAGCGCACCAA-----------------------CCA--------------------------AAAA------CA
droEre2 scaffold_4845:19767520-19767666 + der-mir-9c Known_mirbase AT-------------------------------------------TGCACC------------TTT--------TATCATTTTTGCTGTTTCTTTGGTATTCTAGCTGTAGATTGTTT-CG---CGCACATTGTATATCATCTAAAGCTTTTATACCAAAGCTCCAGCTTAAATTGCTTAACAACGCACCAA-----------------------CCA----------AA---AAACAGCCACAAATA------CA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droGri2
-TTTTTGTC----TTA--ACTATATAG----------T---TAGT--------ACCACACACAATTGCAATTTCTTTCATTTTTGCTGTTTCTTTGGTATTCTAGCTGTAGATTGTTT-C------TATATCTTGTATCATCTAAAGCTTTTATACCAAAGCTCCAGCTTAAATTGCTTGCCACCGCCT---------GCAC--CCCGCCACCAACAG----------C-----AACAGCAACAAAAA------CASizeHit CountTotal NormTotalM041

Female-body		V109

Male-body
..........................................................................................TCTTTGGTATTCTAGCTGTAG.................................................................................................................................................21111451.001145147226729
..........................................................................................TCTTTGGTATTCTAGCTGTAGA................................................................................................................................................2213941.00394121911750
...........................................................................................CTTTGGTATTCTAGCTGTAG.................................................................................................................................................201399.003993918
..........................................................................................TCTTTGGTATTCTAGCTGTA..................................................................................................................................................201195.0019513164
...........................................................................................CTTTGGTATTCTAGCTGTAGA................................................................................................................................................211188.001881862
..........................................................................................TCTTTGGTATTCTAGCTGTAGAT...............................................................................................................................................231109.001097930
..............................................................................................................................................TAAAGCTTTTATACCAAAGCT.............................................................................................211102.001021020
..............................................................................................................................................TAAAGCTTTTATACCAAAGCTC............................................................................................22162.0062611
..........................................................................................TCTTTGGTATTCTAGCTGT...................................................................................................................................................19148.00483513
..........................................................................................TCTTTGGTATTCTAGCTGTAGT................................................................................................................................................22145.00452124
..........................................................................................TCTTTGGTATTCTAGCTGTAGAA...............................................................................................................................................23138.00382612
............................................................................................TTTGGTATTCTAGCTGTAG.................................................................................................................................................19136.0036279
............................................................................................TTTGGTATTCTAGCTGTAGA................................................................................................................................................20133.00332310
..........................................................................................TCTTTGGTATTCTAGCTGTAGATT..............................................................................................................................................24111.001147
............................................................................................TTTGGTATTCTAGCTGTAGAT...............................................................................................................................................21111.001138
..........................................................................................TCTTTGGTATTCTAGCTGTAT.................................................................................................................................................21110.001046
...............................................................................................................................................AAAGCTTTTATACCAAAGCT.............................................................................................2019.00990
............................................................................................TTTGGTATTCTAGCTGTAGATT..............................................................................................................................................2219.00936
..........................................................................................TCTTTGGTATTCTAGCTGTAGG................................................................................................................................................2219.00981
...........................................................................................CTTTGGTATTCTAGCTGTAGAT...............................................................................................................................................2218.00880
.............................................................................................TTGGTATTCTAGCTGTAG.................................................................................................................................................1818.00871
.........................................................................................TTCTTTGGTATTCTAGCTGTAG.................................................................................................................................................2217.00770
..........................................................................................TCTTTGGTATTCTAGCTGTAA.................................................................................................................................................2117.00743
..........................................................................................TCTTTGGTATTCTAGCTGTAGAG...............................................................................................................................................2316.00642
..........................................................................................TCTTTGGTATTCTAGCTGTAC.................................................................................................................................................2116.00624
..........................................................................................TCTTTGGTATTCTAGCTGTAGC................................................................................................................................................2215.00532
..........................................................................................TCTTTGGTATTCTAGCTG....................................................................................................................................................1815.00550
.........................................................................................TTCTTTGGTATTCTAGCTGTAGA................................................................................................................................................2315.00550
...........................................................................................CTTTGGTATTCTAGCTGTA..................................................................................................................................................1915.00550
...........................................................................................CTTTGGTATTCTAGCTGTAGAA...............................................................................................................................................2214.00440
............................................................................................................................................TCTAAAGCTTTTATACCAAAGCT.............................................................................................2314.00440
..........................................................................................TCTTTGGTATTCTAGCTAG...................................................................................................................................................1913.00303
...............................................................................................................................................AAAGCTTTTATACCAAAGCTC............................................................................................2113.00330
...........................................................................................CTTTGGTATTCTAGCTGTAGT................................................................................................................................................2113.00330
...........................................................................................CTTTGGTATTCTAGCTGTAGATT..............................................................................................................................................2313.00330
.............................................................................................TTGGTATTCTAGCTGTAGA................................................................................................................................................1913.00330
................................................................................................................................................AAGCTTTTATACCAAAGCTC............................................................................................2012.00220
..........................................................................................TCTTTGGTATTCTAGCTGTT..................................................................................................................................................2012.00211
..............................................................................................................................................TAAAGCTTTTATACCAAAGC..............................................................................................2012.00220
...........................................................................................CTTTGGTATTCTAGCTGTAT.................................................................................................................................................2012.00220
..............................................................................................TGGTATTCTAGCTGTAGA................................................................................................................................................1812.00220
..........................................................................................TCTTTGGTATTCTAGCTGTAGAAA..............................................................................................................................................2412.00211
..........................................................................................TCTTTGGTATTCTAGCTGTAGAAAT.............................................................................................................................................2511.00110
..........................................................................................TCTTTGGTATTCTAGCTGTAGATG..............................................................................................................................................2411.00110
..........................................................................................TCTTTGGTATTCTAGCTGTAGGA...............................................................................................................................................2311.00110
..........................................................................................TCTTTGGTATTCTAGCTGTAGCGA..............................................................................................................................................2411.00110
...................................................................................................................................CTTGTATCATCTAAAGCTT..........................................................................................................1911.00110
.........................................................................................TTCTTTGGTATTCTAGCTGT...................................................................................................................................................2011.00110
...........................................................................................CTTTGGTATTCTAGCTGTAGC................................................................................................................................................2111.00110
..............................................................................................................................................TAAAGCTTTTATACCAAAGCTCT...........................................................................................2311.00110
.............................................................................................................................................CTAAAGCTTTTATACCAAAGCT.............................................................................................2211.00110
...........................................................................................CTTTGGTATTCTAGCTGTAGGG...............................................................................................................................................2211.00110
..........................................................................................TCTTTGGTATTCTAGCTGTAGATAA.............................................................................................................................................2511.00110
..........................................................................................TCTTTGGTATTCTAGCTGTAGGG...............................................................................................................................................2311.00110
..........................................................................................TCTTTGGTATTCTAGCTGTAGATC..............................................................................................................................................2411.00110
..........................................................................................TCTTTGGTATTCTAGCTGTG..................................................................................................................................................2011.00101
..............................................................................................................................................TAAAGCTTTTATACCAAAGCTT............................................................................................2211.00110
..........................................................................................TCTTTGGTATTCTAGCTGTAGACA..............................................................................................................................................2411.00110
..........................................................................................TCTTTGGTATTCTAGCTGTAGGCG..............................................................................................................................................2411.00110
..........................................................................................TCTTTGGTATTCTAGCTGTAGATAT.............................................................................................................................................2511.00110
..........................................................................................TCTTTGGTATTCTAGCTGTTT.................................................................................................................................................2111.00101
..........................................................................................TCTTTGGTATTCTAGCTGTGA.................................................................................................................................................2111.00101
............................................................................................TTTGGTATTCTAGCTGTA..................................................................................................................................................1811.00110
..........................................................................................TCTTTGGTATTCTAGCTGTAGTA...............................................................................................................................................2311.00110
...........................................................................................CTTTGGTATTCTAGCTGTAGCGA..............................................................................................................................................2320.50110
..........................................................................................TCTTTGGTATTCTAGCTTAG..................................................................................................................................................20130.23303
droVir3
-GTTTTGTC----TCA--CCCACACACACACACACACAC-A----CACACA------------A-T--------TTTCATTTTTGCTGTTTCTTTGGTATTCTAGCTGTAGATTGTTT-T------TACAGTTTGTATCATCTAAAGCTTTTATACCAAAGCTCCAGCTTAAATTGCTTGCCACCGCCC---------GCAC---CCG-------CCA---ACATCAGC-----ATCAACAAAAACAA------AGSizeHit CountTotal NormTotalM027

Male-body		M028

Head		M047

Female-body		M061

Embryo		SRR060654

Ovary		SRR060655

Testis		SRR060656

Ovary		SRR060657

Testis		SRR060658

Ovary		SRR060659

Testis		SRR060660

Ovary		SRR060661

Embryo		SRR060662

Embryo		SRR060663

Embryo		SRR060664

Male-body		SRR060665

Female-body		SRR060666

Male-body		SRR060667

Female-body		SRR060668

Male-body		SRR060669

Female-body		SRR060670

Testis		SRR060671

Male-body		SRR060672

Female-body		SRR060673

Ovary		SRR060674

Ovary		SRR060675

Ovary		SRR060676

Ovary		SRR060677

Ovary		SRR060678

Testis		SRR060679

Testis		SRR060680

Testis		SRR060681

Testis		SRR060682

Embryo		SRR060683

Testis		SRR060684

Embryo		SRR060685

Embryo		SRR060686

Embryo		SRR060687

Embryo		SRR060688

Ovary		SRR060689

Testis		SRR1106712

embryo_0-2h		SRR1106713

embryo_0-2h		SRR1106714

embryo_2-4h		SRR1106715

embryo_4-6h		SRR1106716

embryo_4-6h		SRR1106717

embryo_6-8h		SRR1106718

embryo_6-8h		SRR1106719

embryo_8-10h		SRR1106720

embryo_8-10h		SRR1106721

embryo_10-12h		SRR1106722

embryo_10-12h		SRR1106723

embryo_12-14h		SRR1106724

embryo_12-14h		SRR1106725

embryo_14-16h		SRR1106726

embryo_14-16h		SRR1106727

larvae		SRR1106728

larvae		SRR1106729

mixed whole adult body		SRR1106730

embryo_16-30h		V047

Embryo		V053

Head		V116

Male-body		GSM1528803

follicle cells		SRR2096013

Ovary_Strain_9_oxidized		SRR2096014

Ovary_Strain_160_oxidized		SRR2096026

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096038

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096050

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096055

Ovary_Min_43		SRR2096056

Ovary_Min_46		SRR2096057

Ovary_Min_50		SRR2096058

Ovary_Min_98		SRR2096059

Ovary_Min_164		SRR2096060

Ovary_Min_193		SRR2096061

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096072

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096079

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096080

embryo_0-2h from 15to16 day old nondysgenic mothers		SRR2096081

embryo_0-2h from 15to16 day old nondysgenic mothers
..........................................................................................TCTTTGGTATTCTAGCTGTAGA................................................................................................................................................2211494838.001494838254632501493120891178414002037059798921645331542914572265431266982731551042176116323188278913712813509157344811335216563996473113186337112824511797457642440217510380345285529474398750431755438270297249179129272651159478615552555158761424524310133500206753198382144174137447192050157603280389314134253021930390
..........................................................................................TCTTTGGTATTCTAGCTGTAG.................................................................................................................................................211527669.0052766934717652105095356979219917063701415627501495760527633127694602175772871226131160631139894824355164255442705660132914899837843899372246454772367774117241142829262232152946245224132891716264621792787365705832882289893119420495345323529325616218502993229111175278985111992322822559
..........................................................................................TCTTTGGTATTCTAGCTGTAGAAA..............................................................................................................................................241115534.00115534121386914146829976201731258785649959742211133171009135573321201127484812662199321448448140062064350840122424181814761499732300117248812014959151695716006873721592546146015431607155860272793322086928701
..........................................................................................TCTTTGGTATTCTAGCTGTAGAA...............................................................................................................................................23160413.0060413919540353565113115554110699711020111058012166231163342782416911293651391496191762424328443629751741171681001112881060178130107441101344481851200712708901665108320992602313669816524
..........................................................................................TCTTTGGTATTCTAGCTG....................................................................................................................................................18133224.0033224339662448110822101100110070286441884722132529146151403265533985447742384127131240690000102843064236176679842784602441328092628598367349
..........................................................................................TCTTTGGTATTCTAGCTGTAGAT...............................................................................................................................................23132449.0032449343540579279313101010122411023401891117042318352230213425455155884612516631147227125201198464113839106181014538710716207200193339249925762632217223881739153520951799182363383422112032
..........................................................................................TCTTTGGTATTCTAGCTGTAGAAAA.............................................................................................................................................25120087.002008700305158241544142191853670000017002054421636702743711561163689701472434102641532011111100000001201005282533034264910771031347382778677641051812751368
..........................................................................................TCTTTGGTATTCTAGCTGTAGATA..............................................................................................................................................24112426.0012426315318502444935118491060100103001750366160551065044804755281414143035000120001223000305816371630120028434920518928620359857272318051659
............................................................................................TTTGGTATTCTAGCTGTAGATT..............................................................................................................................................2215431.00543127814185475338127223500003010119181240515269154161214111720031412001231320004151401216254214313718672301394569492198108113257272
..........................................................................................TCTTTGGTATTCTAGCTGTAGATT..............................................................................................................................................2413726.003726964231243344209747153102306143619183426181251924416321626561401212112403311200111147112152983033512232352091592191621897786268261
..............................................................................................................................................TAAAGCTTTTATACCAAAGCTC............................................................................................2213168.00316800806261170511010411916251315028381219197298252482994483253123603610500000001000000000000004433635900084718400000
..........................................................................................TCTTTGGTATTCTAGCTGTAGATAAA............................................................................................................................................2613104.00310400223701017024164000000000204831923400019936111417173880000000000000000000020003922578505220163541161408992237224
............................................................................................TTTGGTATTCTAGCTGTAGA................................................................................................................................................2012855.0028553101034175616384931603120110005027242233155381051930914111510200001020001020039450133911499139309258179215224164905567138135
..........................................................................................TCTTTGGTATTCTAGCTGTAGATAA.............................................................................................................................................2512820.00282000151171380604278000000201204345935913021572951822261269810000000000011000000300130173203031971310610281179781171177
..........................................................................................TCTTTGGTATTCTAGCTGTA..................................................................................................................................................2012554.0025541037141985171123225465133102813715153414918239253839737936642337232312185791101010112024100024223139044110496676566403070465233367677
..........................................................................................TCTTTGGTATTCTAGCTGTAGC................................................................................................................................................2212224.0022241551021916307291170210112103401331734112213202122594011002010116010000008820002712822381711710171017638197
..............................................................................................................................................TAAAGCTTTTATACCAAAGCT.............................................................................................2112080.00208011456467247511200051261346231224148121207016916366472358621819287312711000000000001000001024071664510649373571001
..........................................................................................TCTTTGGTATTCTAGCTGTAGT................................................................................................................................................2211883.001883226122925670213531226026111505341377162227113158715852121000021111110101001261770713151158102996978559484644241125121
..........................................................................................TCTTTGGTATTCTAGCTGTAGACA..............................................................................................................................................2411749.00174951348116000101200000020015401101034399158292360001000100000100000101011215226149444735404748986086158197
..........................................................................................TCTTTGGTATTCTAGCTGTAGAC...............................................................................................................................................2311687.00168753822192229190664012200010750119991419745035984392997205100011101302101001047122126645754929365761281003313275447
..........................................................................................TCTTTGGTATTCTAGCTGTAGG................................................................................................................................................2211672.001672419415140283371143201000000010026732102313424722137000000101000001101152601211987849875578985510122530
............................................................................................TTTGGTATTCTAGCTGTAGAT...............................................................................................................................................2111662.001662138713533142313230001171081392746994819281291094000000002100000100232202178310912914111265869679904946122118
...........................................................................................CTTTGGTATTCTAGCTGTAGA................................................................................................................................................2111616.00161621126739070131401110000030010101329237636501114812110000100010000000000122032253231416132017011710
..........................................................................................TCTTTGGTATTCTAGCTGTAGAAG..............................................................................................................................................2411452.001452006601208010020000000003714801201006101581700000000000000000001300045251233139382216132230875671169174
..........................................................................................TCTTTGGTATTCTAGCTGT...................................................................................................................................................1911406.0014069312941114815220519811062175648103911181491581098118211311020223223111210233233011364230150191118791077531771916
...........................................................................................CTTTGGTATTCTAGCTGTAG.................................................................................................................................................2011090.00109033910042800301630010004004633259712217109535000000000000000000015300010065327303253
..........................................................................................TCTTTGGTATTCTAGCTGTAGATC..............................................................................................................................................2411054.001054460207131570041201000000440031222392413353240010651011001110101000000200424440372357776759117852114172625
............................................................................................TTTGGTATTCTAGCTGTAGATA..............................................................................................................................................221982.0098201101001435164000000000321650000204134100010000000000000000000034737010152804247592869524210496
..........................................................................................TCTTTGGTATTCTAGCTGTAT.................................................................................................................................................211980.00980056111650713146110783256113444240434531641218955521828000000000000000000096265012212620022220161028
..........................................................................................TCTTTGGTATTCTAGCTGTAA.................................................................................................................................................211953.0095332264122200724191320530251125251115113327103233112027493617120000000000000000020889045587244912133923214293954
..........................................................................................TCTTTGGTATTCTAGCTGTAGAAC..............................................................................................................................................241934.0093400164013030201300000000073144100120552230300000010000100000004000501621351033833192119215533267283
..........................................................................................TCTTTGGTATTCTAGCTGTAGAG...............................................................................................................................................231812.0081201142120161134421071001004002211810145527183151321122220000000000000100000101013108097331419131622173027206749
............................................................................................TTTGGTATTCTAGCTGTAG.................................................................................................................................................191476.0047600632823201004313401010051024732101070154875174919000000000000000000046701121811181017341314926129
..........................................................................................TCTTTGGTATTCTAGCTGTAGCAA..............................................................................................................................................241449.00449000071180104000000000100231000000011225342830000000000000000000001000001007959000000330000
.............................................................................................TTGGTATTCTAGCTGTAGA................................................................................................................................................191422.0042211412192440110200230000000045135863230337513740000000000000000000100011171014269116815515111511
..........................................................................................TCTTTGGTATTCTAGCTGTAGAGA..............................................................................................................................................241315.003150040200020114200000010010241100210264211000000000000000000002000315147227166266161092631
..........................................................................................TCTTTGGTATTCTAGCTGTAGACC..............................................................................................................................................241309.0030916034110000001000000030010000321200000022001111000230002015100101051725247526363055431
..........................................................................................TCTTTGGTATTCTAGCTGTAGATG..............................................................................................................................................241300.003000040206020001400000010033044130060556141000000010000000000041000926342314348164149162721
..........................................................................................TCTTTGGTATTCTAGCTGTAGAAAC.............................................................................................................................................251290.0029000231020001020000000000221200000101300900000000000010000001000010526514391634912132638
..........................................................................................TCTTTGGTATTCTAGC......................................................................................................................................................161264.00264000000000000000000000000000000000000000012111615101715112014341391555792600000000000000000000
............................................................................................TTTGGTATTCTAGCTGTAGAAA..............................................................................................................................................221226.002260011120401406123000000000611531000503107250100000000000000000010001251620143230389105912
............................................................................................TTTGGTATTCTAGCTGTAGAA...............................................................................................................................................211226.00226001000100000030000000000111200001002101000000000100000000000000122122151921641314131162220
..........................................................................................TCTTTGGTATTCTAGCTGTAGCA...............................................................................................................................................231226.00226000000100000000000000001000000000111738000000000000000000000100000667736000010130000
..........................................................................................TCTTTGGTATTCTAGCTGTAC.................................................................................................................................................211213.0021315421542100000033021100320010104111130611111800000000000000000004131011103601000071201
..........................................................................................TCTTTGGTATTCTAGCTGTAGAACA.............................................................................................................................................251180.00180002000200000000000000003000000000042827111600000000000000000000000000141393516211014513
...........................................................................................CTTTGGTATTCTAGCTGTAGAAA..............................................................................................................................................231171.001710096010203000100000000002425200006021113711000000000000000000010000010110000101141
.............................................................................................TTGGTATTCTAGCTGTAG.................................................................................................................................................181170.001700017062190200122000000100132363300352134674000000000000000000002102835630142152044
..........................................................................................TCTTTGGTATTCTAGCTGTAGAAAT.............................................................................................................................................251166.00166001000001010100100001001219200003049647000000000000000000000000422725104400345311010
..............................................................................................TGGTATTCTAGCTGTAGA................................................................................................................................................181160.0016000180901600010020100002001883571300234712010000000000000000000001002036000300170176
..........................................................................................TCTTTGGTATTCTAGCTGTAGATAT.............................................................................................................................................251156.0015600000031101010000000000112330010804235701000000000100000000000037152315030002548157
............................................................................................TTTGGTATTCTAGCTGTAGATAAA............................................................................................................................................241122.0012200000000000010000000000012510000100234500000000000000000000000001171790020006681714
..........................................................................................TCTTTGGTATTCTAGCTGTAGACAA.............................................................................................................................................251109.00109002030000000000000000006101000003017649000000000000000000001000201715410000043568
............................................................................................TTTGGTATTCTAGCTGTAGATC..............................................................................................................................................221109.00109400040301110100000005005011025020101002300000000000000000000000043279821105120111
............................................................................................TTTGGTATTCTAGCTGTAGATTAAA...........................................................................................................................................251107.00107000000000011100000000000108200003021823000000000000000000001000031616600010093487
..............................................................................................................................................TAAAGCTTTTATACCAAAGCTA............................................................................................221106.001060029000000000000000000000119010010028210100000000000000000000000193000000100000000
............................................................................................TTTGGTATTCTAGCTGTAGATTA.............................................................................................................................................231103.0010300100010202012000000000010200000200311000000000000000000000200002741143237884559
..........................................................................................TCTTTGGTATTCTAGCT.....................................................................................................................................................17193.00930000000000000000000000000000000000000000100000000000100000000003311111600000013111517
............................................................................................TTTGGTATTCTAGCTGTAGATAA.............................................................................................................................................23192.0092001010200000010000000002212000004013337000000000000000000000000229810000000434116
...............................................................................................................................................AAAGCTTTTATACCAAAGCTC............................................................................................21185.008500840000000000000000000000000000000000100000000000000000000000000000000000000000
..........................................................................................TCTTTGGTATTCTAGCTGTAGATTAAA...........................................................................................................................................27179.0079003000000000000000000000001300003034300000000000000000000000000012071000011042247
................................................................................................................TTGTTT-T------TACAGTTTGTATCATC..................................................................................................................23178.007800210000000000001000001045785302201320200000000000000000000000019600002020000000
..........................................................................................TCTTTGGTATTCTAGCTGTAGATTAA............................................................................................................................................26174.00740011000000000000000000010403010040586430000000000000000000000000283510000031352
............................................................................................TTTGGTATTCTAGCTGTAGATTAA............................................................................................................................................24171.00710000000000001000000000011221000030243520000000000000000000010000088502000033167
..........................................................................................TCTTTGGTATTCTAGCTGTAGATTT.............................................................................................................................................25171.00710020200000001000000001010420022400303221000000002110000000000110674430000020133
............................................................................................................................................TCTAAAGCTTTTATACCAAAGCT.............................................................................................23168.006800108000000100011000001102137110210232110000000000000000000000006510122000100000
..........................................................................................TCTTTGGTATTCTAGCTGTATG................................................................................................................................................22265.0013000000030100011200000000132243303100510010000000000000000000011002312019000000180001
...........................................................................................CTTTGGTATTCTAGCTGTAGAT...............................................................................................................................................22163.006300260001000000000000000000352010002010110000000000000000000000000032470001200010
..........................................................................................TCTTTGGTATTCTAGCTGTAGATCT.............................................................................................................................................25160.00601002020000000000000000000000131201000002000000000000000000000000034533403642251
..........................................................................................TCTTTGGTATTCTAGCTGTAGATTA.............................................................................................................................................25159.005900000000000020000001000010221001100201000000000000000000000100011105401052114135
..........................................................................................TCTTTGGTATTCTAGCTGTAGATAAG............................................................................................................................................26159.0059000000000000000000000000001000000010112000000000000000000000000001610501010028235
..........................................................................................TCTTTGGTATTCTAGCTGTAGATCA.............................................................................................................................................25156.00561010100000000000000000020100220101282421000000000000000000000000032600141223010
..........................................................................................TCTTTGGTATTCTAGCTGTAGGAA..............................................................................................................................................24155.005500000020300001000000000100000000100210600000000000000000000000040031100000024914
..............................................................................................................................................TAAAGCTTTTATACCAAAGCTCA...........................................................................................23154.005400200000000000000000001030411000105211100000000000000000000000022900000000000000
.............................................................................................TTGGTATTCTAGCTGTAGAAA..............................................................................................................................................21154.00540051001010000100000000022120000020252120000000000000000000000004143400000040004
..............................................................................................................................................TAAAGCTTTTATACCAAAGC..............................................................................................20153.005300162000000000021010002111152310220122000000000000000000000000000102200000000000
...........................................................................................CTTTGGTATTCTAGCTGTAGAA...............................................................................................................................................22152.005200421000000000000000000000001000010000100000000000000000000000000001100000101020
.............................................................................................................................................CTAAAGCTTTTATACCAAAGCT.............................................................................................22150.00500061100000000010000000107276100010102110000000000000000000000002400002003000000
.........................................................................................TTCTTTGGTATTCTAGCTGTAGA................................................................................................................................................23145.004500140000000000000000000000001000000000000020030514020101000000000221020010000021
..........................................................................................TCTTTGGTATTCTAGCTGTAGTA...............................................................................................................................................23145.00450110000000000000000000010000110100001110000000000000000000010000036400200112295
...............................................................................................GGTATTCTAGCTGTAGA................................................................................................................................................17144.00440000000000000000000000000000000000000000000000000000000000000001568900000070233
...............................................................................................................................................AAAGCTTTTATACCAAAGCT.............................................................................................20138.003800341000000000000000000001001000000001000000000000000000000000000000000000000000
..........................................................................................TCTTTGGTATTCTAGCTAG...................................................................................................................................................19337.67113001030140924032100001320931364502334112113000000000000000000000200300200000000000
..........................................................................................TCTTTGGTATTCTAGCTGTAGGA...............................................................................................................................................23134.00340000001000000000000000000100001000110000000000000000000000010000012100000015468
droMoj3
-TTTTTGTC----TCA--CCC-------------------------------------ACACAATTGCCAC-TCTTTCATTTTTGCTGTTTCTTTGGTATTCTAGCTGTAGATTGTTT-T------CACATATTGTATCATCTAAAGCTTTTATACCAAAGCTCCAGCTTAAATTGCTTGACACCGCCC-AACCGCTCGCACAATCCG-------CCA---ACAT-----------------CAGT-A------AASizeHit CountTotal NormTotalM046

Female-body		V041

Embryo		V049

Head		V056

Head		M060

Embryo		V110

Male-body
..........................................................................................TCTTTGGTATTCTAGCTGTAGA................................................................................................................................................22156810.00568102626841969561220219722198
..........................................................................................TCTTTGGTATTCTAGCTGTAG.................................................................................................................................................21142360.00423602225752261901246355204993
..........................................................................................TCTTTGGTATTCTAGCTGTAGAAA..............................................................................................................................................2413001.0030012172314141939785
..........................................................................................TCTTTGGTATTCTAGCTGTAGAA...............................................................................................................................................2312943.0029439606755189511
..........................................................................................TCTTTGGTATTCTAGCTGTAGAT...............................................................................................................................................2312336.00233614315192176559
...........................................................................................CTTTGGTATTCTAGCTGTAGA................................................................................................................................................2112322.0023222219101983
...........................................................................................CTTTGGTATTCTAGCTGTAG.................................................................................................................................................2011791.0017911765612143
..............................................................................................................................................TAAAGCTTTTATACCAAAGCT.............................................................................................2111767.001767322141414260
..............................................................................................................................................TAAAGCTTTTATACCAAAGCTC............................................................................................2211015.0010151092009040
..........................................................................................TCTTTGGTATTCTAGCTGTAGAAAA.............................................................................................................................................251756.0075668520223314
..........................................................................................TCTTTGGTATTCTAGCTGTA..................................................................................................................................................201630.0063030419173717776
..............................................................................................................................................TAAAGCTTTTATACCAAAGCC.............................................................................................211407.0040700004070
............................................................................................TTTGGTATTCTAGCTGTAGA................................................................................................................................................201320.0032015931241177
..........................................................................................TCTTTGGTATTCTAGCTGTAGATA..............................................................................................................................................241266.0026613125011054
...........................................................................................CTTTGGTATTCTAGCTGTAGAAA..............................................................................................................................................231242.0024224100010
............................................................................................TTTGGTATTCTAGCTGTAGATT..............................................................................................................................................221220.0022032552310721
..........................................................................................TCTTTGGTATTCTAGCTGTAGATT..............................................................................................................................................241180.001805426587512
..........................................................................................TCTTTGGTATTCTAGCTGTAA.................................................................................................................................................211169.001691151266219
..............................................................................................................................................TAAAGCTTTTATACCAAAGC..............................................................................................201150.0015070001430
............................................................................................TTTGGTATTCTAGCTGTAG.................................................................................................................................................191146.001461061525810
..........................................................................................TCTTTGGTATTCTAGCTGTAGAC...............................................................................................................................................231144.00144303201027
...........................................................................................CTTTGGTATTCTAGCTGTAGAT...............................................................................................................................................221133.0013312800050
..........................................................................................TCTTTGGTATTCTAGCTGT...................................................................................................................................................191132.00132784512303
..........................................................................................TCTTTGGTATTCTAGCTGTAGT................................................................................................................................................221130.00130313074499
............................................................................................................................................TCTAAAGCTTTTATACCAAAGCT.............................................................................................231128.00128181001090
..........................................................................................TCTTTGGTATTCTAGCTGTAT.................................................................................................................................................211126.001262084925195
..........................................................................................TCTTTGGTATTCTAGCTGTAGC................................................................................................................................................221121.001212120137555
..........................................................................................TCTTTGGTATTCTAGCTGTAGATAAA............................................................................................................................................261104.001048731184
...........................................................................................CTTTGGTATTCTAGCTGTAGAA...............................................................................................................................................22185.00857800070
.............................................................................................................................................CTAAAGCTTTTATACCAAAGCT.............................................................................................22184.008411100720
..........................................................................................TCTTTGGTATTCTAGCTGTAGATAA.............................................................................................................................................25182.0082561301120
................................................................................................................TTGTTT-T------CACATATTGTATCATC..................................................................................................................23180.00803600710
............................................................................................TTTGGTATTCTAGCTGTAGAT...............................................................................................................................................21177.007724932363
.............................................................................................TTGGTATTCTAGCTGTAGA................................................................................................................................................19170.007033101305
..........................................................................................TCTTTGGTATTCTAGCTGTAGATC..............................................................................................................................................24170.0070180431332
..........................................................................................TCTTTGGTATTCTAGCTG....................................................................................................................................................18167.00672011630
............................................................................................................................................TCTAAAGCTTTTATACCAAAGC..............................................................................................22159.00590000590
..........................................................................................TCTTTGGTATTCTAGCTGTAGG................................................................................................................................................22158.0058191543152
..........................................................................................TCTTTGGTATTCTAGCTGTAC.................................................................................................................................................21149.00494101412
...........................................................................................CTTTGGTATTCTAGCTGTAGAAAA.............................................................................................................................................24236.00727200000
.............................................................................................TTGGTATTCTAGCTGTAG.................................................................................................................................................18131.00311831063
...............................................................................................................................................AAAGCTTTTATACCAAAGCT.............................................................................................20131.00312500060
..........................................................................................TCTTTGGTATTCTAGCTGTAGAG...............................................................................................................................................23129.00292032220
............................................................................................................................................TCTAAAGCTTTTATACCAAAGCC.............................................................................................23128.00280000280
..............................................................................................TGGTATTCTAGCTGTAGA................................................................................................................................................18126.002615000110
..........................................................................................TCTTTGGTATTCTAGCTGTAGAAC..............................................................................................................................................24124.00242301180
..............................................................................................................................................TAAAGCTTTTATACCAAAGCTT............................................................................................22124.002410000140
..........................................................................................TCTTTGGTATTCTAGCTGTAGAAG..............................................................................................................................................24119.00191110070
............................................................................................TTTGGTATTCTAGCTGTAGATA..............................................................................................................................................22118.0018580050
...........................................................................................CTTTGGTATTCTAGCTGTA..................................................................................................................................................19118.00181800000
.............................................................................................................................................CTAAAGCTTTTATACCAAAGCTC............................................................................................23117.00172000150
...............................................................................................................................................AAAGCTTTTATACCAAAGCTC............................................................................................21117.00171200050
.............................................................................................................................................CTAAAGCTTTTATACCAAAGCC.............................................................................................22117.00170000170
.............................................................................................................................................CTAAAGCTTTTATACCAAAGC..............................................................................................21116.00161000141
.........................................................................................TTCTTTGGTATTCTAGCTGTAGA................................................................................................................................................23116.00161600000
............................................................................................TTTGGTATTCTAGCTGTAGAA...............................................................................................................................................21115.0015710070
............................................................................................TTTGGTATTCTAGCTGTAGAAA..............................................................................................................................................22214.50292410040
...........................................................................................CTTTGGTATTCTAGCTGTAGATA..............................................................................................................................................23113.00131300000
..............................................................................................................................................TAAAGCTTTTATACCAAAG...............................................................................................19113.00131100020
..........................................................................................TCTTTGGTATTCTAGCTGTT..................................................................................................................................................20112.0012701031
..............................................................................................................................................TAAAGCTTTTATACCAAAGCTA............................................................................................22110.0010500050
.........................................................................................TTCTTTGGTATTCTAGCTGTAG.................................................................................................................................................22110.00101000000
..........................................................................................TCTTTGGTATTCTAGCTGTATG................................................................................................................................................2229.50190300160
...........................................................................................CTTTGGTATTCTAGCTGTAGATAAA............................................................................................................................................2519.009900000
............................................................................................TTTGGTATTCTAGCTGTAGATC..............................................................................................................................................2219.009101070
..........................................................................................TCTTTGGTATTCTAGCTGTAGACA..............................................................................................................................................2418.008120050
...........................................................................................CTTTGGTATTCTAGCTGTAGT................................................................................................................................................2117.007700000
............................................................................................TTTGGTATTCTAGCTGTAGAC...............................................................................................................................................2117.007000070
..........................................................................................TCTTTGGTATTCTAGCTGTAGAAAC.............................................................................................................................................2517.007210040
.............................................................................................TTGGTATTCTAGCTGTAGAA...............................................................................................................................................2017.007300040
..........................................................................................TCTTTGGTATTCTAGCTGTAGTA...............................................................................................................................................2317.007120031
..........................................................................................TCTTTGGTATTCTAGCTGTAGTAA..............................................................................................................................................2417.007420001
..............................................................................................................................................TAAAGCTTTTATACCAAAGCTCC...........................................................................................2316.006000060
.............................................................................................TTGGTATTCTAGCTGTAGAT...............................................................................................................................................2016.006600000
..........................................................................................TCTTTGGTATTCTAGCTGTATC................................................................................................................................................2226.0012131151
..........................................................................................TCTTTGGTATTCTAGCTGTAGGAA..............................................................................................................................................2416.006230001
...........................................................................................CTTTGGTATTCTAGCTGTAGAG...............................................................................................................................................2216.006600000
..............................................................................................................................................TAAAGCTTTTATACCAAAGCTCT...........................................................................................2316.006000060
...........................................................................................CTTTGGTATTCTAGCTGTAA.................................................................................................................................................2016.006600000
...........................................................................................CTTTGGTATTCTAGCTGTAGATAA.............................................................................................................................................2416.006600000
...........................................................................................CTTTGGTATTCTAGCTGTAGATT..............................................................................................................................................2316.006500010
..............................................................................................TGGTATTCTAGCTGTAGAT...............................................................................................................................................1915.005500000
............................................................................................TTTGGTATTCTAGCTGTAGATTAAA...........................................................................................................................................2515.005500000
..........................................................................................TCTTTGGTATTCTAGCTGTAGAGA..............................................................................................................................................2415.005210020
..............................................................................................................................................TAAAGCTTTTATACCAAAGCTCA...........................................................................................2315.005200030
.............................................................................................TTGGTATTCTAGCTGTAGATT..............................................................................................................................................2115.005500000
..........................................................................................TCTTTGGTATTCTAGCTGTATT................................................................................................................................................2215.005301010
..........................................................................................TCTTTGGTATTCTAGCTGTAGAAAT.............................................................................................................................................2514.004300010
............................................................................................................................................TCTAAAGCTTTTATACCAAAGCTC............................................................................................2414.004000040
..........................................................................................TCTTTGGTATTCTAGCTGTAGTC...............................................................................................................................................2314.004300001
droWil2
-T------------------------------------------------------------------------------TTTTGCTGTTTCTTTGGTATTCTAGCTGTAGATTGTTT-TT---TGCACATTGTATATCATCTAAAGCTTTTATACCAAAGCTCCAGCTTAAATTGCTTGCCAACGCACCC---------------CAAAAA---CAA----------AAT--AAAATG---CAACAA------AASizeHit CountTotal NormTotalM020

Head		M045

Female-body		V117

Male-body		V118

Embryo		V119

Head
..........................................................................................TCTTTGGTATTCTAGCTGTAG.................................................................................................................................................21248832.5097665432451171127132745612540
..........................................................................................TCTTTGGTATTCTAGCTGTAGA................................................................................................................................................22233818.00676361234518245993339122141
..........................................................................................TCTTTGGTATTCTAGCTGTAGAAA..............................................................................................................................................2423126.50625367125011491015
..........................................................................................TCTTTGGTATTCTAGCTG....................................................................................................................................................1821843.50368736832020
..........................................................................................TCTTTGGTATTCTAGCTGTAGAT...............................................................................................................................................232871.0017423557291360540
...........................................................................................CTTTGGTATTCTAGCTGTAGA................................................................................................................................................212802.5016053154324611
..........................................................................................TCTTTGGTATTCTAGCTGTAGAA...............................................................................................................................................232775.50155156803667511
..........................................................................................TCTTTGGTATTCTAGCTGTAGG................................................................................................................................................222652.5013051246163346
...........................................................................................CTTTGGTATTCTAGCTGTAG.................................................................................................................................................202541.50108312101552724
..........................................................................................TCTTTGGTATTCTAGCTGTAGAAAA.............................................................................................................................................252296.50593225113381
............................................................................................TTTGGTATTCTAGCTGTAGATT..............................................................................................................................................222279.005587415740557
..........................................................................................TCTTTGGTATTCTAGCTGTA..................................................................................................................................................202226.00452152132259647
..........................................................................................TCTTTGGTATTCTAGCTGTAGATA..............................................................................................................................................242220.00440611413181
..............................................................................................................................................TAAAGCTTTTATACCAAAGCT.............................................................................................212174.003482190014214
............................................................................................TTTGGTATTCTAGCTGTAGA................................................................................................................................................202138.5027713142210416
..........................................................................................TCTTTGGTATTCTAGCTGT...................................................................................................................................................192106.5021316626579
..........................................................................................TCTTTGGTATTCTAGCTGTAGATT..............................................................................................................................................242105.00210544179018
..........................................................................................TCTTTGGTATTCTAGCTGTAGT................................................................................................................................................222100.50201152193198
..........................................................................................TCTTTGGTATTCTAGCTGTAC.................................................................................................................................................212100.5020117733144
..........................................................................................TCTTTGGTATTCTAGCTGTAA.................................................................................................................................................21277.50155214744241
............................................................................................TTTGGTATTCTAGCTGTAG.................................................................................................................................................19276.0015266264434
..........................................................................................TCTTTGGTATTCTAGCTGTAGATAA.............................................................................................................................................25266.501330350980
..............................................................................................................................................TAAAGCTTTTATACCAAAGCTC............................................................................................22259.5011901010135
...........................................................................................CTTTGGTATTCTAGCTGTAGAAA..............................................................................................................................................23251.50103098050
..........................................................................................TCTTTGGTATTCTAGCTGTAGATAAA............................................................................................................................................26246.50930390540
............................................................................................TTTGGTATTCTAGCTGTAGAT...............................................................................................................................................21240.508110193436
...........................................................................................CTTTGGTATTCTAGCTGTAGAT...............................................................................................................................................22239.00781650120
..........................................................................................TCTTTGGTATTCTAGCTGTAT.................................................................................................................................................21235.507141014511
...........................................................................................CTTTGGTATTCTAGCTGTAGAA...............................................................................................................................................22234.0068065030
..........................................................................................TCTTTGGTATTCTAGCTGTAGAG...............................................................................................................................................23233.50674161451
..........................................................................................TCTTTGGTATTCTAGCTGTAGAAG..............................................................................................................................................24222.0044080360
..........................................................................................TCTTTGGTATTCTAGCTGTAGAC...............................................................................................................................................23220.50411550210
.............................................................................................TTGGTATTCTAGCTGTAGA................................................................................................................................................19220.5041028292
..........................................................................................TCTTTGGTATTCTAGCTGTAGC................................................................................................................................................22218.50371240183
................................................................................................................TTGTTT-TT---TGCACATTGTATATCATC..................................................................................................................26218.5037040330
..........................................................................................TCTTTGGTATTCTAGCTGTAGAAC..............................................................................................................................................24218.5037520300
............................................................................................TTTGGTATTCTAGCTGTAGATA..............................................................................................................................................22215.0030120261
..........................................................................................TCTTTGGTATTCTAGCTAG...................................................................................................................................................19315.00450203211
.............................................................................................TTGGTATTCTAGCTGTAG.................................................................................................................................................18213.5027316053
............................................................................................TTTGGTATTCTAGCTGTAGAAA..............................................................................................................................................22213.50270110160
..........................................................................................TCTTTGGTATTCTAGCTGTAGATC..............................................................................................................................................24213.0026119141
...........................................................................................CTTTGGTATTCTAGCTGTAGAAAA.............................................................................................................................................24212.5025022030
..........................................................................................TCTTTGGTATTCTAGCTGG...................................................................................................................................................19211.5023230000
..........................................................................................TCTTTGGTATTCTAGCTGTAGACA..............................................................................................................................................24211.5023330170
...........................................................................................CTTTGGTATTCTAGCTGTAGATA..............................................................................................................................................23210.0020015050
..........................................................................................TCTTTGGTATTCTAGCTGTAGAGA..............................................................................................................................................2429.0018110160
..............................................................................................TGGTATTCTAGCTGTAGA................................................................................................................................................1828.5017016010
............................................................................................TTTGGTATTCTAGCTGTAGAA...............................................................................................................................................2128.001608080
..........................................................................................TCTTTGGTATTCTAGCTGTAGATG..............................................................................................................................................2428.0016040120
.........................................................................................TTCTTTGGTATTCTAGCTGTAGA................................................................................................................................................2327.5015015000
..............................................................................................................................................TAAAGCTTTTATACCAAAGC..............................................................................................2027.001407070
............................................................................................................................................TCTAAAGCTTTTATACCAAAGCT.............................................................................................2327.001406071
..........................................................................................TCTTTGGTATTCTAGCTGTATG................................................................................................................................................2236.6720100190
............................................................................................TTTGGTATTCTAGCTGTAGATTA.............................................................................................................................................2326.5013000130
...............................................................................................................................................AAAGCTTTTATACCAAAGCT.............................................................................................2026.0012012000
...........................................................................................CTTTGGTATTCTAGCTGTA..................................................................................................................................................1925.5011010010
..........................................................................................TCTTTGGTATTCTAGCTGC...................................................................................................................................................1935.0015150000
..........................................................................................TCTTTGGTATTCTAGCTGTAGAAAT.............................................................................................................................................2525.001003070
..........................................................................................TCTTTGGTATTCTAGCTGTAGAAAC.............................................................................................................................................2525.001005050
..............................................................................................................................................TAAAGCTTTTATACCAAAG...............................................................................................1925.001002071
.............................................................................................................................................CTAAAGCTTTTATACCAAAGCT.............................................................................................2224.00803050
...........................................................................................CTTTGGTATTCTAGCTGTAGATAA.............................................................................................................................................2423.50704030
...........................................................................................CTTTGGTATTCTAGCTGT...................................................................................................................................................1823.50707000
.........................................................................................TTCTTTGGTATTCTAGCTGTAG.................................................................................................................................................2223.50707000
...............................................................................................................................................AAAGCTTTTATACCAAAGCTC............................................................................................2123.00606000
...........................................................................................CTTTGGTATTCTAGCTGTAGATAAA............................................................................................................................................2523.00603030
..........................................................................................TCTTTGGTATTCTAGCTGTAGCAA..............................................................................................................................................2423.00600060
..........................................................................................TCTTTGGTATTCTAGCTGTAGATAT.............................................................................................................................................2522.50500041
..........................................................................................TCTTTGGTATTCTAGCTGTG..................................................................................................................................................2022.50530101
..........................................................................................TCTTTGGTATTCTAGCTGTT..................................................................................................................................................2022.50521200
..............................................................................................................................................TAAAGCTTTTATACCAAAGCTA............................................................................................2222.50505000
..........................................................................................TCTTTGGTATTCTAGCTGTAGGA...............................................................................................................................................2322.50510040
.............................................................................................TTGGTATTCTAGCTGTAGATT..............................................................................................................................................2122.00400040
..........................................................................................TCTTTGGTATTCTAGCTGTAGATTA.............................................................................................................................................2522.00401030
...........................................................................................CTTTGGTATTCTAGCTGTAGATT..............................................................................................................................................2322.00402020
..........................................................................................TCTTTGGTATTCTAGCTGTAGGAA..............................................................................................................................................2422.00400040
............................................................................................TTTGGTATTCTAGCTGTAGATTAA............................................................................................................................................2422.00400040
..........................................................................................TCTTTGGTATTCTAGCTA....................................................................................................................................................1831.67541000
..........................................................................................TCTTTGGTATTCTAGCTGTAGATTAA............................................................................................................................................2621.50300030
..........................................................................................TCTTTGGTATTCTAGCTGAG..................................................................................................................................................2021.50330000
............................................................................................TTTGGTATTCTAGCTGTAGG................................................................................................................................................2021.50330000
............................................................................................TTTGGTATTCTAGCTGTAGATAAA............................................................................................................................................2421.50300030
..............................................................................................................................................TAAAGCTTTTATACCAAA................................................................................................1821.50300030
.............................................................................................TTGGTATTCTAGCTGTAGAT...............................................................................................................................................2021.50301020
..........................................................................................TCTTTGGTATTCTAGCTGTAGATAAC............................................................................................................................................2621.50300030
..........................................................................................TCTTTGGTATTCTAGCTGTGA.................................................................................................................................................2121.50301020
............................................................................................................................................TCTAAAGCTTTTATACCAAAG...............................................................................................2121.50301002
..............................................................................................TGGTATTCTAGCTGTAGAT...............................................................................................................................................1921.00201001
dp5
-CTCTCCCA----TTCGCTGTCTGTC---------------GACT--------TCCATGCACTTTTTGTTCTCCTTTAATTTTTGCTGTTTCTTTGGTATTCTAGCTGTAGATTGTTT-TT---TGCACATTGTATATCATCTAAAGCTTTTATACCAAAGCTCCAGCTTAAATTGCTTAACAACGCACCAA-----------------------CAA----------CA-----ACAACAACAGTAA------CTSizeHit CountTotal NormTotalM022

Male-body		M040

Female-body		M059

Embryo		M062

Head		V043

Embryo		V051

Head		V112

Male-body		SRR902010

Ovary		SRR902011

Testis		SRR902012

CNS imaginal disc
..........................................................................................TCTTTGGTATTCTAGCTGTAG.................................................................................................................................................211233608.00233608638141937177018067099696993440501223018132
..........................................................................................TCTTTGGTATTCTAGCTGTAGA................................................................................................................................................221163371.001633714215932121641252969355117828582567462582
...........................................................................................CTTTGGTATTCTAGCTGTAG.................................................................................................................................................20112259.001225911210120617732840
...........................................................................................CTTTGGTATTCTAGCTGTAGA................................................................................................................................................2115487.00548715264306015915138
..........................................................................................TCTTTGGTATTCTAGCTGTAGAT...............................................................................................................................................2314219.004219714789046381511172981139
..........................................................................................TCTTTGGTATTCTAGCTGTA..................................................................................................................................................2013457.0034571320628714472996574378157
..........................................................................................TCTTTGGTATTCTAGCTGTAGAAA..............................................................................................................................................2412880.00288012177581102284513644
..........................................................................................TCTTTGGTATTCTAGCTGTAGAA...............................................................................................................................................2312540.002540214291103587371471143
............................................................................................TTTGGTATTCTAGCTGTAGA................................................................................................................................................2011876.0018760413701209346751014
..........................................................................................TCTTTGGTATTCTAGCTGTAA.................................................................................................................................................2111252.001252198921129217119712
..............................................................................................................................................TAAAGCTTTTATACCAAAGCT.............................................................................................2111012.00101206352904311502620
............................................................................................TTTGGTATTCTAGCTGTAG.................................................................................................................................................191899.008991707209126882342
..........................................................................................TCTTTGGTATTCTAGCTGTAGT................................................................................................................................................221682.006824424171138922112369
..........................................................................................TCTTTGGTATTCTAGCTGTAGAAAA.............................................................................................................................................251593.00593047390120386100
..............................................................................................................................................TAAAGCTTTTATACCAAAGCTC............................................................................................221514.005140234166940083135
..........................................................................................TCTTTGGTATTCTAGCTGT...................................................................................................................................................191451.0045143111578182421430
.............................................................................................TTGGTATTCTAGCTGTAGA................................................................................................................................................191429.00429087003008320236
..........................................................................................TCTTTGGTATTCTAGCTGTAGATT..............................................................................................................................................241386.0038601071105271137764
...........................................................................................CTTTGGTATTCTAGCTGTAGAT...............................................................................................................................................221353.0035302665040163131
..........................................................................................TCTTTGGTATTCTAGCTGTAGATA..............................................................................................................................................241253.002530102130210097812
............................................................................................TTTGGTATTCTAGCTGTAGATT..............................................................................................................................................221246.00246228606231003366
.............................................................................................TTGGTATTCTAGCTGTAG.................................................................................................................................................181216.0021601571020040511
...........................................................................................CTTTGGTATTCTAGCTGTAGAAA..............................................................................................................................................231196.00196019410000100
............................................................................................TTTGGTATTCTAGCTGTAGAT...............................................................................................................................................211183.0018304420401551364
...........................................................................................CTTTGGTATTCTAGCTGTA..................................................................................................................................................191182.00182018200000000
...........................................................................................CTTTGGTATTCTAGCTGTAGAA...............................................................................................................................................221153.00153015300000000
..........................................................................................TCTTTGGTATTCTAGCTGTAGG................................................................................................................................................221130.001301280102211508
.........................................................................................TTCTTTGGTATTCTAGCTGTAG.................................................................................................................................................221118.00118011110000321
..........................................................................................TCTTTGGTATTCTAGCTG....................................................................................................................................................18197.00976212110110325
..........................................................................................TCTTTGGTATTCTAGCTGTAT.................................................................................................................................................21195.00950265032619151
..............................................................................................................................................TAAAGCTTTTATACCAAAGCC.............................................................................................21191.009101819000000
...........................................................................................CTTTGGTATTCTAGCTGTAA.................................................................................................................................................20180.008008000000000
.............................................................................................................................................CTAAAGCTTTTATACCAAAGCT.............................................................................................22177.0077037301200700
..........................................................................................TCTTTGGTATTCTAGCTGTAGATAAA............................................................................................................................................26174.0074058100001500
..........................................................................................TCTTTGGTATTCTAGCTGTAGATAA.............................................................................................................................................25162.0062040304011400
..............................................................................................TGGTATTCTAGCTGTAGA................................................................................................................................................18162.0062028000008521
................................................................................................................TTGTTT-TT---TGCACATTGTATATCATC..................................................................................................................26159.005902510501000
..........................................................................................TCTTTGGTATTCTAGCTGTAGAC...............................................................................................................................................23153.0053020201010911
..........................................................................................TCTTTGGTATTCTAGCTGTAC.................................................................................................................................................21153.005318320803100
..........................................................................................TCTTTGGTATTCTAGCTGTAGC................................................................................................................................................22152.0052019112523217
...........................................................................................CTTTGGTATTCTAGCTGTAGT................................................................................................................................................21145.004504100000310
...........................................................................................CTTTGGTATTCTAGCTGTAGAAAA.............................................................................................................................................24144.004404400000000
..........................................................................................TCTTTGGTATTCTAGCTGTT..................................................................................................................................................20143.004303301104220
..............................................................................................................................................TAAAGCTTTTATACCAAAGC..............................................................................................20143.0043015243000010
..........................................................................................TCTTTGGTATTCTAGCTGTAGGAG..............................................................................................................................................24242.008400000008400
...............................................................................................................................................AAAGCTTTTATACCAAAGCT.............................................................................................20142.004204020000000
.........................................................................................TTCTTTGGTATTCTAGCTGTAGA................................................................................................................................................23141.004103500000105
...........................................................................................CTTTGGTATTCTAGCTGTAGATA..............................................................................................................................................23132.003202400200600
............................................................................................................................................TCTAAAGCTTTTATACCAAAGCT.............................................................................................23129.0029016120100000
...........................................................................................CTTTGGTATTCTAGCTGTAGATAAA............................................................................................................................................25128.002802210000500
..........................................................................................TCTTTGGTATTCTAGCTGTAGAG...............................................................................................................................................23127.002701300301901
..........................................................................................TCTTTGGTATTCTAGCTGTAGATC..............................................................................................................................................24126.002602200000220
..........................................................................................TCTTTGGTATTCTAGCTGTAGAAG..............................................................................................................................................24124.002401500200502
.............................................................................................TTGGTATTCTAGCTGTAGAT...............................................................................................................................................20123.002309100001111
..........................................................................................TCTTTGGTATTCTAGCTGTAGTAA..............................................................................................................................................24123.002307101001400
...........................................................................................CTTTGGTATTCTAGCTGTAGATAA.............................................................................................................................................24121.002102000100000
..........................................................................................TCTTTGGTATTCTAGCTGTAGATG..............................................................................................................................................24120.002001000001630
...........................................................................................CTTTGGTATTCTAGCTGT...................................................................................................................................................18119.001901900000000
............................................................................................TTTGGTATTCTAGCTGTAGAAA..............................................................................................................................................22119.001901500000301
...............................................................................................................................................AAAGCTTTTATACCAAAGCTC............................................................................................21118.001801800000000
............................................................................................TTTGGTATTCTAGCTGTA..................................................................................................................................................18118.001801600001010
..........................................................................................TCTTTGGTATTCTAGCTGTAGATCTG............................................................................................................................................26115.001500000001500
............................................................................................TTTGGTATTCTAGCTGTAGATA..............................................................................................................................................22115.00150720100410
..........................................................................................TCTTTGGTATTCTAGCTGTAGTA...............................................................................................................................................23114.00140400100810
..........................................................................................TCTTTGGTATTCTAGCTGTAGATTG.............................................................................................................................................25114.00140800000420
..........................................................................................TCTTTGGTATTCTAGCT.....................................................................................................................................................17114.00140000000716
............................................................................................TTTGGTATTCTAGCTGTAGAA...............................................................................................................................................21113.00130600000511
.............................................................................................TTGGTATTCTAGCTGTAGAAA..............................................................................................................................................21111.00110700000400
..........................................................................................TCTTTGGTATTCTAGCTGTAGATCC.............................................................................................................................................25110.001000000000100
..........................................................................................TCTTTGGTATTCTAGCTGTAGATCT.............................................................................................................................................25110.00100100000540
..............................................................................................................................................TAAAGCTTTTATACCAAAG...............................................................................................19110.00100200100322
..............................................................................................................................................TAAAGCTTTTATACCAAAGCTCC...........................................................................................23110.00100341000020
..........................................................................................TCTTTGGTATTCTAGCTGTAGAAC..............................................................................................................................................24110.00100420100300
...........................................................................................CTTTGGTATTCTAGCTGTAGATT..............................................................................................................................................23110.00100800001100
..............................................................................................................................................TAAAGCTTTTATACCAAAGCTCA...........................................................................................2319.0090400000500
..............................................................................................................................................TAAAGCTTTTATACCAAAGCTA............................................................................................2219.0090810000000
..........................................................................................TCTTTGGTATTCTAGCTGTAGTG...............................................................................................................................................2319.0090000000810
..........................................................................................TCTTTGGTATTCTAGCTGC...................................................................................................................................................1918.0080062000000
.............................................................................................TTGGTATTCTAGCTGTAGATT..............................................................................................................................................2118.0080500000003
...........................................................................................CTTTGGTATTCTAGCTGTAGG................................................................................................................................................2118.0080800000000
.................................................................................................TATTCTAGCTGTAGA................................................................................................................................................1518.0080000000215
..............................................................................................TGGTATTCTAGCTGTAGAT...............................................................................................................................................1918.0080300000302
..........................................................................................TCTTTGGTATTCTAGCTGTAGATACC............................................................................................................................................2618.0080000000350
..........................................................................................TCTTTGGTATTCTAGCTAG...................................................................................................................................................1928.00160800003311
..........................................................................................TCTTTGGTATTCTAGCTGTAGACA..............................................................................................................................................2418.0080600100100
..............................................................................................TGGTATTCTAGCTGTAG.................................................................................................................................................1717.0070000000601
..........................................................................................TCTTTGGTATTCTAGC......................................................................................................................................................1617.0070000000502
.........................................................................................TTCTTTGGTATTCTAGCTGTA..................................................................................................................................................2117.0070300000400
..........................................................................................TCTTTGGTATTCTAGCTGTAGATCCC............................................................................................................................................2617.0070000000070
..............................................................................................................................................TAAAGCTTTTATACCAAAGCTT............................................................................................2217.0070310000300
.............................................................................................TTGGTATTCTAGCTGTAGAA...............................................................................................................................................2017.0070310000201
...........................................................................................CTTTGGTATTCTAGCTGTAGAC...............................................................................................................................................2216.0060210100200
.............................................................................................................................................CTAAAGCTTTTATACCAAAGC..............................................................................................2116.0060420000000
..........................................................................................TCTTTGGTATTCTAGCTGTAGATTT.............................................................................................................................................2516.0060300000030
...............................................................................................GGTATTCTAGCTGTAGA................................................................................................................................................1716.0060000000015
............................................................................................................................................TCTAAAGCTTTTATACCAAAGC..............................................................................................2216.0060320100000
.............................................................................................................................................CTAAAGCTTTTATACCAAAGCC.............................................................................................2216.0060060000000
..........................................................................................TCTTTGGTATTCTAGCTGTAGATTC.............................................................................................................................................2516.0060100000140
............................................................................................................................................TCTAAAGCTTTTATACCAAAGCC.............................................................................................2316.0060060000000
................................................................................................GTATTCTAGCTGTAGA................................................................................................................................................1616.0060000000204
............................................................................................TTTGGTATTCTAGCTGTAGATAAA............................................................................................................................................2416.0060600000000
..........................................................................................TCTTTGGTATTCTAGCTGTATG................................................................................................................................................2225.50110010900100
................................................................................................................................................AAGCTTTTATACCAAAGCTC............................................................................................2015.0050300000200
..........................................................................................TCTTTGGTATTCTAGCTGTAGCA...............................................................................................................................................2315.0050100100300
droPer2
-T-------------------------------------------C-------------------C--------TTTAATTTTTGCTGTTTCTTTGGTATTCTAGCTGTAGATTGTTT-TT---TGCACATTGTATATCATCTAAAGCTTTTATACCAAAGCTCCAGCTTAAATTGCTTAACAACGCACCAA-----------------------CAA----------CAA--CAACAGTAACTACAG------TASizeHit CountTotal NormTotalM021

Embryo		M042

Female-body		V042

Embryo		V050

Head		V057

Head		V111

Male-body
..........................................................................................TCTTTGGTATTCTAGCTGTAG.................................................................................................................................................21176087.0076087270992946035032005344610574
..........................................................................................TCTTTGGTATTCTAGCTGTAGA................................................................................................................................................22122292.00222928941894310435246902151
...........................................................................................CTTTGGTATTCTAGCTGTAG.................................................................................................................................................2012514.00251413247633019
..........................................................................................TCTTTGGTATTCTAGCTG....................................................................................................................................................1812194.002194218730130
..........................................................................................TCTTTGGTATTCTAGCTGTAGG................................................................................................................................................2211167.0011671114438020
..........................................................................................TCTTTGGTATTCTAGCTGTAGAAA..............................................................................................................................................2411069.001069631329941410
..........................................................................................TCTTTGGTATTCTAGCTGTA..................................................................................................................................................201810.0081058393304160228
...........................................................................................CTTTGGTATTCTAGCTGTAGA................................................................................................................................................211762.0076227562002
..........................................................................................TCTTTGGTATTCTAGCTGTAGAT...............................................................................................................................................231556.005561682932081849
..........................................................................................TCTTTGGTATTCTAGCTGTAGAA...............................................................................................................................................231482.0048216825441658
..........................................................................................TCTTTGGTATTCTAGCTGTAGT................................................................................................................................................221322.003221021137253441
..........................................................................................TCTTTGGTATTCTAGCTGTAA.................................................................................................................................................211284.00284162151521224
..............................................................................................................................................TAAAGCTTTTATACCAAAGCT.............................................................................................211226.0022602203210
..........................................................................................TCTTTGGTATTCTAGCTGT...................................................................................................................................................191191.001919554711159
............................................................................................TTTGGTATTCTAGCTGTAG.................................................................................................................................................191160.00160612110887
..........................................................................................TCTTTGGTATTCTAGCTGTAGAAAA.............................................................................................................................................251131.0013158619003
..........................................................................................TCTTTGGTATTCTAGCTGTAC.................................................................................................................................................211103.001038462182
..........................................................................................TCTTTGGTATTCTAGCTGTAT.................................................................................................................................................21188.0088214764712
..............................................................................................................................................TAAAGCTTTTATACCAAAGCTC............................................................................................22169.00691680000
............................................................................................TTTGGTATTCTAGCTGTAGA................................................................................................................................................20163.00632493324
..........................................................................................TCTTTGGTATTCTAGCTGTAGATT..............................................................................................................................................24139.003918413211
..........................................................................................TCTTTGGTATTCTAGCTGTAGATA..............................................................................................................................................24137.003712214000
...........................................................................................CTTTGGTATTCTAGCTGTAGAA...............................................................................................................................................22134.00341330000
...........................................................................................CTTTGGTATTCTAGCTGTAGAAA..............................................................................................................................................23134.00340340000
..........................................................................................TCTTTGGTATTCTAGCTGTAGACA..............................................................................................................................................24132.00323200000
...........................................................................................CTTTGGTATTCTAGCTGTAGAT...............................................................................................................................................22129.00291280000
...........................................................................................CTTTGGTATTCTAGCTGTA..................................................................................................................................................19128.00280280000
..........................................................................................TCTTTGGTATTCTAGCTGTAGC................................................................................................................................................22128.00283931111
.............................................................................................TTGGTATTCTAGCTGTAG.................................................................................................................................................18127.00272221020
..........................................................................................TCTTTGGTATTCTAGCTGTAGAC...............................................................................................................................................23122.00221551010
..........................................................................................TCTTTGGTATTCTAGCTGTAGAAC..............................................................................................................................................24121.00212001000
...........................................................................................CTTTGGTATTCTAGCTGTAA.................................................................................................................................................20121.00210210000
..........................................................................................TCTTTGGTATTCTAGCTGTAGATAAA............................................................................................................................................26119.00192161000
............................................................................................TTTGGTATTCTAGCTGTAGATT..............................................................................................................................................22119.0019640027
.........................................................................................TTCTTTGGTATTCTAGCTGTAG.................................................................................................................................................22119.00190190000
..........................................................................................TCTTTGGTATTCTAGCTGTAGATAA.............................................................................................................................................25117.00170125000
..........................................................................................TCTTTGGTATTCTAGCTGTAGAAG..............................................................................................................................................24113.00131012000
.............................................................................................TTGGTATTCTAGCTGTAGA................................................................................................................................................19113.0013191002
............................................................................................TTTGGTATTCTAGCTGTAGAT...............................................................................................................................................21113.0013070015
...........................................................................................CTTTGGTATTCTAGCTGTAGAAAA.............................................................................................................................................24113.00130130000
..........................................................................................TCTTTGGTATTCTAGCTGC...................................................................................................................................................1919.009900000
...............................................................................................................................................AAAGCTTTTATACCAAAGCT.............................................................................................2018.008080000
.........................................................................................TTCTTTGGTATTCTAGCTGTAGA................................................................................................................................................2317.007070000
..........................................................................................TCTTTGGTATTCTAGCTGTCT.................................................................................................................................................2117.007002050
................................................................................................................TTGTTT-TT---TGCACATTGTATATCATC..................................................................................................................2617.007070000
..........................................................................................TCTTTGGTATTCTAGCTGTT..................................................................................................................................................2016.006030030
..........................................................................................TCTTTGGTATTCTAGCTGTAGAG...............................................................................................................................................2316.006060000
..........................................................................................TCTTTGGTATTCTAGCTGTAGAGA..............................................................................................................................................2416.006501000
............................................................................................TTTGGTATTCTAGCTGTAGATA..............................................................................................................................................2216.006411000
..............................................................................................................................................TAAAGCTTTTATACCAAAG...............................................................................................1916.006024000
..........................................................................................TCTTTGGTATTCTAGCTGTAGATC..............................................................................................................................................2416.006200004
..........................................................................................TCTTTGGTATTCTAGCTA....................................................................................................................................................1816.006600000
..........................................................................................TCTTTGGTATTCTAGCTGG...................................................................................................................................................1935.67171600010
..........................................................................................TCTTTGGTATTCTAGCTTAG..................................................................................................................................................2055.40270270000
............................................................................................TTTGGTATTCTAGCTGTAGAA...............................................................................................................................................2115.005140000
..........................................................................................TCTTTGGTATTCTAGCTGTAAC................................................................................................................................................2214.004400000
..............................................................................................TGGTATTCTAGCTGTAGA................................................................................................................................................1814.004040000
..............................................................................................................................................TAAAGCTTTTATACCAAAGC..............................................................................................2014.004040000
..........................................................................................TCTTTGGTATTCTAGCTGTG..................................................................................................................................................2014.004200020
...........................................................................................CTTTGGTATTCTAGCTGTAGT................................................................................................................................................2113.003030000
..........................................................................................TCTTTGGTATTCTAGCTGTAGGA...............................................................................................................................................2313.003120000
..........................................................................................TCTTTGGTATTCTAGCTGTAGAAAC.............................................................................................................................................2513.003210000
.............................................................................................................................................CTAAAGCTTTTATACCAAAGCT.............................................................................................2213.003030000
..........................................................................................TCTTTGGTATTCTAGCTGTAGCA...............................................................................................................................................2313.003012000
..........................................................................................TCTTTGGTATTCTAGCTAG...................................................................................................................................................1962.50150150000
..........................................................................................TCTTTGGTATTCTAGCTGTAGATTT.............................................................................................................................................2512.002020000
..........................................................................................TCTTTGGTATTCTAGCTGTAGAGG..............................................................................................................................................2412.002200000
..........................................................................................TCTTTGGTATTCTAGCTGTACT................................................................................................................................................2212.002000020
..........................................................................................TCTTTGGTATTCTAGCTGTAGACAA.............................................................................................................................................2512.002110000
droAna3
----------------------------------------------GCACTCC--C-------TTT--------CATTATTTTTGCTGTTTCTTTGGTATTCTAGCTGTAGATTGTTT-CA---CGCACATTGTATATCATCTAAAGCTTTTATACCAAAGCTCCAGCTTAAATTGCTTAACAACGCACCAA-----------------------CAA----------CA-----ACAACAACAACAA------CASizeHit CountTotal NormTotalM044

Female-body		M058

Embryo		V039

Embryo		V055

Head		V105

Male-body		V106

Head
..........................................................................................TCTTTGGTATTCTAGCTGTAGA................................................................................................................................................22122707.002270765261066028757181161767
..........................................................................................TCTTTGGTATTCTAGCTGTAG.................................................................................................................................................21121059.0021059571337192620170032034104
..........................................................................................TCTTTGGTATTCTAGCTGTAGAA...............................................................................................................................................2312580.0025801812208173846
..........................................................................................TCTTTGGTATTCTAGCTGTAGAAA..............................................................................................................................................2412257.0022572271252766624
..............................................................................................................................................TAAAGCTTTTATACCAAAGCT.............................................................................................211688.0068823635102117
..........................................................................................TCTTTGGTATTCTAGCTGTAGAT...............................................................................................................................................231620.0062021532233211514
...........................................................................................CTTTGGTATTCTAGCTGTAGA................................................................................................................................................211600.00600572261001
...........................................................................................CTTTGGTATTCTAGCTGTAG.................................................................................................................................................201519.00519497105142
..........................................................................................TCTTTGGTATTCTAGCTGTA..................................................................................................................................................201412.004121355410399183
..........................................................................................TCTTTGGTATTCTAGCTGTAT.................................................................................................................................................211266.00266415111195166
..........................................................................................TCTTTGGTATTCTAGCTGTAGAAAA.............................................................................................................................................251240.002406011960100
..........................................................................................TCTTTGGTATTCTAGCTGTAGATA..............................................................................................................................................241205.002052113251001
..............................................................................................................................................TAAAGCTTTTATACCAAAGCTC............................................................................................221200.00200101891000
..............................................................................................................................................TAAAGCTTTTATACCAAAGC..............................................................................................201178.0017811752000
..............................................................................................................................................TAAAGCTTTTATACCAAAGCC.............................................................................................211176.0017601760000
..........................................................................................TCTTTGGTATTCTAGCTGTAGT................................................................................................................................................221121.00121242524231510
..........................................................................................TCTTTGGTATTCTAGCTGTAGATT..............................................................................................................................................241120.0012035455111212
..........................................................................................TCTTTGGTATTCTAGCTGTAA.................................................................................................................................................211112.0011221241262623
............................................................................................TTTGGTATTCTAGCTGTAGA................................................................................................................................................201101.00101532821143
..........................................................................................TCTTTGGTATTCTAGCTGT...................................................................................................................................................19198.00983022522109
..........................................................................................TCTTTGGTATTCTAGCTGTAC.................................................................................................................................................21180.0080042681212
..........................................................................................TCTTTGGTATTCTAGCTGTAGAC...............................................................................................................................................23175.00751704000
..........................................................................................TCTTTGGTATTCTAGCTGTAGC................................................................................................................................................22166.0066231191220
............................................................................................TTTGGTATTCTAGCTGTAG.................................................................................................................................................19161.00613666337
..........................................................................................TCTTTGGTATTCTAGCTGTAGG................................................................................................................................................22161.0061251014741
..........................................................................................TCTTTGGTATTCTAGCTGTAGAAC..............................................................................................................................................24142.00420348000
..........................................................................................TCTTTGGTATTCTAGCTG....................................................................................................................................................18138.00381321400
..........................................................................................TCTTTGGTATTCTAGCTGTAGATAA.............................................................................................................................................25137.00372278000
............................................................................................TTTGGTATTCTAGCTGTAGATT..............................................................................................................................................22137.003741131612
.............................................................................................TTGGTATTCTAGCTGTAGA................................................................................................................................................19136.003612211011
...........................................................................................CTTTGGTATTCTAGCTGTAGAA...............................................................................................................................................22129.00292090000
............................................................................................................................................TCTAAAGCTTTTATACCAAAGCT.............................................................................................23127.00271250001
.............................................................................................................................................CTAAAGCTTTTATACCAAAGCT.............................................................................................22127.00270270000
..........................................................................................TCTTTGGTATTCTAGCTGTAGATAAA............................................................................................................................................26126.00264148000
..........................................................................................TCTTTGGTATTCTAGCTGTAGAG...............................................................................................................................................23124.00245105013
..........................................................................................TCTTTGGTATTCTAGCTGTAGAAG..............................................................................................................................................24123.00232174000
...........................................................................................CTTTGGTATTCTAGCTGTAGAT...............................................................................................................................................22121.00211740000
..........................................................................................TCTTTGGTATTCTAGCTGTAGACA..............................................................................................................................................24119.00191117000
...........................................................................................CTTTGGTATTCTAGCTGTAGAAA..............................................................................................................................................23118.00181530000
............................................................................................................................................TCTAAAGCTTTTATACCAAAGC..............................................................................................22117.00170160010
................................................................................................................TTGTTT-CA---CGCACATTGTATATCATC..................................................................................................................26116.0016790000
...........................................................................................CTTTGGTATTCTAGCTGTA..................................................................................................................................................19111.00111100000
..........................................................................................TCTTTGGTATTCTAGCTGTAGAAAC.............................................................................................................................................25110.0010091000
............................................................................................TTTGGTATTCTAGCTGTAGAA...............................................................................................................................................21110.0010361000
............................................................................................................................................TCTAAAGCTTTTATACCAAAGCC.............................................................................................23110.00100100000
..............................................................................................TGGTATTCTAGCTGTAGA................................................................................................................................................1819.009342000
..........................................................................................TCTTTGGTATTCTAGCTGTT..................................................................................................................................................2019.009500031
..........................................................................................TCTTTGGTATTCTAGCTAG...................................................................................................................................................1917.007300022
..........................................................................................TCTTTGGTATTCTAGCTGTAGCA...............................................................................................................................................2317.007015100
..........................................................................................TCTTTGGTATTCTAGCTGTCT.................................................................................................................................................2117.007003400
.............................................................................................................................................CTAAAGCTTTTATACCAAAGCC.............................................................................................2217.007070000
..........................................................................................TCTTTGGTATTCTAGCTGC...................................................................................................................................................1917.007070000
.............................................................................................TTGGTATTCTAGCTGTAG.................................................................................................................................................1817.007320011
..........................................................................................TCTTTGGTATTCTAGCTGTAGAGA..............................................................................................................................................2417.007043000
............................................................................................TTTGGTATTCTAGCTGTAGAAA..............................................................................................................................................2216.006123000
..........................................................................................TCTTTGGTATTCTAGCTGTAGCAA..............................................................................................................................................2425.5011029000
................................................................................................................TTGTTT-CA---CGCACATTGTATATC.....................................................................................................................2315.005140000
..........................................................................................TCTTTGGTATTCTAGCTGTAGATC..............................................................................................................................................2415.005131000
.............................................................................................TTGGTATTCTAGCTGTAGAA...............................................................................................................................................2015.005140000
..............................................................................................................................................TAAAGCTTTTATACCAAAG...............................................................................................1915.005011012
..........................................................................................TCTTTGGTATTCTAGCTGTATC................................................................................................................................................2215.005102200
..........................................................................................TCTTTGGTATTCTAGCTGTATT................................................................................................................................................2215.005201101
...........................................................................................CTTTGGTATTCTAGCTGTAGATT..............................................................................................................................................2315.005410000
..........................................................................................TCTTTGGTATTCTAGCTGTAGTAA..............................................................................................................................................2415.005005000
.............................................................................................................................................CTAAAGCTTTTATACCAAAGC..............................................................................................2115.005050000
...........................................................................................CTTTGGTATTCTAGCTGTAGAAAA.............................................................................................................................................2414.004400000
.........................................................................................TTCTTTGGTATTCTAGCTGTAGA................................................................................................................................................2314.004400000
............................................................................................TTTGGTATTCTAGCTGTAGAT...............................................................................................................................................2114.004130000
..........................................................................................TCTTTGGTATTCTAGCTGTGA.................................................................................................................................................2113.003200001
..........................................................................................TCTTTGGTATTCTAGCTGTAGTA...............................................................................................................................................2313.003201000
.............................................................................................................................................CTAAAGCTTTTATACCAAAGCTC............................................................................................2313.003030000
..........................................................................................TCTTTGGTATTCTAGCTGTTT.................................................................................................................................................2113.003111000
droBip1
-TTTTTGGT----TCA--CTCTTCTCC----------TCAC----CGCACC--TCCTTCTACTTTTT-----T-CATTATTTTTGCTGTTTCTTTGGTATTCTAGCTGTAGATTGTTTTCA---CGCACATTGTATATCATCTAAAGCTTTTATACCAAAGCTCCAGCTTAAATTGCTTAACAACGCACCAC-----------------------CA-----------------AACAACAACAACAA------CASizeHit CountTotal NormTotal
No Reads
droKik1
-T-------------------------------------------CGCACTCT----------CTT--------TATCATTTTTGCTGTTTCTTTGGTATTCTAGCTGTAGATTGTTT-CAC-ACGCACATTGTATATCATCTAAAGCTTTTATACCAAAGCTCCAGCTTAAATTGCTTA----------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droFic1
-T-------------------------------------------CGCACT------------TCT--------TATCATTTTTGCTGTTTCTTTGGTATTCTAGCTGTAGATTGTTT-CA---CGCACATTGTATATCATCTAAAGCTTTTATACCAAAGCTACAGCTTAAATTGCTTA----------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEle1
-T-------------------------------------------CGCACT------------ATT--------TATCATTTTTGCTGTTTCTTTGGTATTCTAGCTGTAGATTGTTT-CA---CGCACATTGTATATCATCTAAAGCTTTTATACCAAAGCTCCAGCTTAAATTGCTTAACAACGCACCAG-----------------------CAA------------------------CAAAA--------ASizeHit CountTotal NormTotal
No Reads
droRho1
-T-------------------------------------------CGCACT------------TTT--------TATCATTTTTGCTGTTTCTTTGGTATTCTAGCTGTAGATTGTTT-CA---CGCACATTGTATATCATCTAAAGCTTTTATACCAAAGCTCCAGCTTAAATTGCTTAACAACGCACCAG-----------------------CAA----------CAA--AAACAGCCACAGGAA------TGSizeHit CountTotal NormTotal
No Reads
droBia1
-T-------------------------------------------TGCACT------------ACT--------TATCATTTTTGCTGTTTCTTTGGTATTCTAGCTGTAGATTGTTT-CACGACGCACATTGTATATCATCTAAAGCTTTTATACCAAAGCTCCAGCTTAAATTGCTTAACAACGCACCAG-----------------------CTACCAACCT---C----AGACAGCCACAAATA------CASizeHit CountTotal NormTotal
No Reads
droTak1
-T--------------------------------------------GCACT------------ATT--------TATCATTTTTGCTGTTTCTTTGGTATTCTAGCTGTAGATTGTTT-CA---CGCACATTGTATATCATCTAAAGCTTTTATACCAAAGCTCCAGCTTAAATTGCTTAACAACGCACAAG-----------------------CAA----------AAACCAAACAGCCACAAAA--------ASizeHit CountTotal NormTotal
No Reads
droEug1
-T-------------------------------------------TGCACT------------ATT--------TATCATTTTTGCTGTTTCTTTGGTATTCTAGCTGTAGATTGTTT-CA---CGCACATTGTATATCATCTAAAGCTTTTATACCAAAGCTCCAGCTT--------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
dm3
-T-------------------------------------------TGCACT------------ATT--------TATCATTTTTGCTGTTTCTTTGGTATTCTAGCTGTAGATTGTTT-CA---CGCACATTGTATATCATCTAAAGCTTTTATACCAAAGCTCCAGCTTAAATTGCTTAACA-------------------------------------------------------------------------SizeHit CountTotal NormTotalGSM154618

Ovary		GSM154620

Ovary		GSM154621

Ovary		GSM154622

Ovary		GSM180328

Head		GSM180329

Mixed-body		GSM180330

Embryo		GSM180331

Embryo		GSM180332

Embryo		GSM180333

Embryo		GSM180334

Larvae		GSM180335

Disc		GSM180336

Pupae		GSM180337

S2		GSM239041

Head		GSM239050

Head		GSM239051

S2		GSM239052

S2		GSM246084

Head		GSM266765

S2		GSM280082

Ovary		GSM280083

Ovary		GSM280084

Ovary		GSM280085

Testis		GSM280086

Ovary		GSM280087

S2-NP		GSM280088

S2-NP		GSM312995

Head		GSM313160

Head		GSM313161

Head		GSM313162

Head		GSM313163

Head		GSM313164

Head		GSM313165

Head		GSM343287

Embryo		GSM379050

Ovary		GSM379051

Ovary		GSM379052

Ovary		GSM379053

Ovary		GSM379054

Ovary		GSM379055

Ovary		GSM379056

Ovary		GSM379057

Ovary		GSM379058

Ovary		GSM379059

Ovary		GSM379060

Ovary		GSM379061

Ovary		GSM379062

Ovary		GSM379063

Ovary		GSM379064

Ovary		GSM379065

Ovary		GSM379066

Ovary		GSM379067

Ovary		GSM424739

S2		GSM424740

S2		GSM424741

S2		GSM467729

Female-body		GSM467730

Female-body		GSM467731

Female-body		M002

CS		M003

Male-body		M004

Male-body		M005

ML-DmD32		M006

ML-DmD32		M029

OSC		M030

OSC		M031

OSC		M032

S2-R+		M033

S2-R+		M034

S2-R+		M035

S2-R+		M036

S2-R+		M037

S2-R+		M038

S2-R+		M039

S2-R+		M048

S2-R+		OSS2

OSS		OSS6

OSS		OSS7

OSS		OSS8

OSS		S1

Head		S10

Embryo		S11

Embryo		S12

Embryo		S13

Embryo		S14

Embryo		S15

S2-GMR		S16

Kc		S17

Larvae		S18

Larvae		S19

Pupae		S2

Head		S20

Pupae		S21

Disc		S22

Head		S23

Female-body		S24

Male-body		S25

Larvae		S26

Larvae		S27

Pupae		S28

Pupae		S29

Head		S3

Male-body		S30

S2-GMR		S31

S2		S32

S2		S33

Kc		S34

Kc		S35

Kc		S4

Female-body		S5

Disc		S6

Embryo		S7

Embryo		S8

S2		S9

Embryo		SRR001337

Head		SRR001338

Head		SRR001339

Head		SRR001340

Head		SRR001341

Head		SRR001342

Head		SRR001343

Head		SRR001344

Head		SRR001345

Head		SRR001346

Head		SRR001347

Head		SRR001348

Head		SRR001349

Head		SRR001664

Head		SRR010951

Ovary		SRR010952

Ovary		SRR010953

Ovary		SRR010954

Ovary		SRR010955

Ovary		SRR010956

Ovary		SRR010957

Ovary		SRR010958

Ovary		SRR010959

Ovary		SRR010960

Ovary		SRR014268

Embryo		SRR014269

Embryo		SRR014270

Embryo		SRR014271

Embryo		SRR014272

Embryo		SRR014273

Ovary		SRR014274

Ovary		SRR014275

Ovary		SRR014276

Ovary		SRR014277

Ovary		SRR014278

Ovary		SRR014279

Ovary		SRR014280

Ovary		SRR014281

Ovary		SRR014282

Ovary		SRR023197

S2		SRR023399

S2		SRR023400

S2		SRR023402

S2		SRR023407

S2		SRR029028

S2		SRR029029

S2		SRR029030

S2		SRR029031

S2		SRR029032

S2		SRR029033

S2		SRR029608

Head		SRR029633

Head		SRR030145

gb3		SRR031692

Head		SRR031693

Head		SRR031694

Head		SRR031696

Head		SRR031697

Head		SRR031698

Head		SRR031699

Head		SRR031700

Head		SRR031701

Head		SRR031702

Head		SRR031703

Head		SRR031704

Head		SRR032092

S2		SRR032093

S2		SRR032094

S2		SRR032095

S2-NP		SRR032096

S2-NP		SRR032152

Head		SRR060643

Testis		SRR060644

Ovary		SRR060645

Testis		SRR060646

Ovary		SRR060647

Ovary		SRR060648

Ovary		SRR060649

Ovary		SRR060650

Testis		SRR060651

Ovary		SRR060652

Testis		SRR060653

Ovary		SRR065151

Ovary		SRR065152

Ovary		SRR065153

Ovary		SRR065154

Ovary		SRR065155

Ovary		SRR065800

Ovary		SRR065801

Ovary		SRR065802

Ovary		SRR065803

Ovary		SRR065804

Ovary		SRR065805

Ovary		SRR065806

Ovary		SRR065807

Ovary		SRR097865

S2-NP		SRR097866

S2-NP		SRR097867

S2-NP		SRR298536

Ovary		SRR298537

Ovary		SRR298711

Ovary		SRR298712

Ovary		SRR317110

Ovary		SRR317111

Ovary		SRR317112

Ovary		SRR317113

Ovary		SRR317114

Ovary		SRR317115

Ovary		SRR317116

Ovary		SRR317117

Ovary		SRR341115

S2		SRR341116

S2		SRR341117

S2		SRR341118

S2		SRR351332

Mixed-body		SRR351333

Mixed-body		T004

OSC		T005

CME-L1		V001

Embryo		V002

Embryo		V003

S2		V006

Female-body		V007

Head		V008

S2		V009

CME-L1		V010

ML-DmD20-C5		V011

Sg4		V012

Male-body		V013

Head		V014

DTT		V015

DreRFHV		V018

Kc167		V019

GM2		V020

S2-R+		V021

ML-DmD21		V022

ML-DmD32		V023

Head		V024

Kc167		V025

S2-R+		V026

1182-2H		V027

ML-DmD21		V028

CME-W1-Cl.8+		V029

ML-DmD9		V030

ML-DmD8		V031

GM2		V032

S1		V033

CME-W1-Cl.8+		V034

ML-DmD16-C3		V035

ML-DmD32		V036

ML-DmD20-C5		V037

S2		V038

S2		V063

Ovary		V0632

Ovary		V064

Ovary		V0642

Ovary		V065

Ovary		V0652

Ovary		V066

Ovary		V0662

Ovary		V067

S2-NP		V073

mbn2		V074

S3		V075

ML-DmBG1-C1		V076

ML-DmBG3-C2		V077

Head		V078

Head		V079

Head		V080

Head		V081

Embryo		V082

Embryo		V083

Male-body		V084

Female-body		V085

CME-W2		V086

Female-body		V088

Ovary		V0882

Ovary		V089

Ovary		V0892

Ovary		V090

Male-body		V091

fGS/OSS		V092

Male-body		V093

Male-body		V094

S2-R+		V095

S2-R+		V096

Ovary		V097

Ovary		V098

Ovary		V125

ML-DmD9		V126

CME-L1		V127

G2		V128

S3		V129

ML-DmBG1-C1		V130

ML-DmBG3-C2		V131

ML-DmD16-C3		V132

ML-DmD32		V133

Sg4		V134

ML-DmD8		V135

CME-W2		V136

Male-body		V137

Head		V138

Male-body		V139

Female-body		V140

Female-body		V141

Female-body		V142

Female-body		V144

OSC		V145

S2		V146

S1		V147

1182-2H		V148

mbn2		GSM1528798

follicle cells
..........................................................................................TCTTTGGTATTCTAGCTGTAGA................................................................................................................................................2213805244.00380524400302454771296025391564010510160400014202521494667122221954119762674102560245784823711135244222177812667184955646157189777248935415702153212124896113605522420973690000000000000000083208438664567562518333821183120919131384185815135967378227103413021435551714112311623693379318002103230646350850297061785292884421311417206414110215819173179128160134144164420612806279930812402140127211373815501974799462713019609221091807726161381817754254461107588442078347920873326061837386065443764966490455251128649290295106401898776040362768213912191116891325719589333927176125815903154743901375734561788471229804222167422341360427791461313032601825183208816022970247298666518083652613428281566773242401435270556280033402194983932359139652886270431247531162817464395988127852923643270627016662909185577591152261807011672575487451614615064981127181517569941809425952219431954646242174601472462124050592281072600101971339146789111181427328156801496843721609185018813161205124335168821202185524663334208881381514793713313056740187875735915490639614247358581772313313471173382131732581909700124159167031127715827476148642124897856937
..........................................................................................TCTTTGGTATTCTAGCTGTAG.................................................................................................................................................2112962311.0029623110000672415572017114581442553000806182737013213251146311653452545857112814812248131636761833197976634042760311992141421580417146404564356543391088588401030285000000000000000002196217517661794724732283574425622241149461632391721174537648826569625830190171129315360110726137017922123860105520133908676107571215833225345392525915613424347652738693510241731056190821633772915143745173026159623519716181644365723641313570911707717115021685698904842821011182509312961504821173538654651077161514222992297633742040109152427151116176668733180910726473354340125198195026225990561193964266202236532795205138555909239050943940925022280002617650667433443382653198313073662133594100203519013411315126657723514267194175563538619863427784942278623231357246373919516098323786038638885233854637969287729666140983771027203102873212673346489226056844277163609270860714893214913733574394424364516622383418436053266118917606252824912840975791456605134951118811175292721252885485475103637711561483654684119537156178113924317847957355463373826427330519790691807118135142021315335458116913796736037
..........................................................................................TCTTTGGTATTCTAGCTGTAGAAA..............................................................................................................................................241112058.0011205800000386100000000000391122800340000000572414552811612835196432276250883522561043718155000000000000000000000001816141201485526551500201030675140010601052827111122136401000020401032026612912835552534881727173417291064414324576152254194382592511723100070000076020037120105000000512793379551671136769427511543131056409644175003613183971890839713708381423138637645062600262200784217103104341058871477131429112540135743395517121243061317531471007732371437810083807719812628425836121644119483706180934661851111851764432304762142225711278713051133916115251398426963171914936395
..........................................................................................TCTTTGGTATTCTAGCTGTAGAT...............................................................................................................................................23184249.00842490000323642353900110039781052500300027900208418212249844536851791381861771943053486242036900010450000000000000000067263549454811062396547973851223759629133291187631841302833631802934274326436631630101000513101218215976751201142232242371291402687515535915077520433958826829910518734610045441392333127043009112802312332823543601954334421795135202031361832615345671001310017110644114994210075294615871434199723552136164960046610632641180080602246534951411441696244628138235316439592381772783133465631451827927320281867262790327041037426610003841124133253202261161315141333791213328154628741120200030958204443437219818372061549262463266331198624132330375401346195826913410533466453113159193
..............................................................................................................................................TAAAGCTTTTATACCAAAGCTC............................................................................................22172194.007219400006320281034125110002002150000900062000077117109141475184121230222090001100000000000000000016038159991254711373228001111632914321895904017111472618257159543620052124811768504130332534264654013622612138546010000000010242000032029032172174213921332810146130000030929040131060400420070601000303100801510000012800000113300000010004716611231185284238354227410400000740208222201321020012211322115117151133341497372510276010327012080003111312401001318394122210102112000100024173317
..........................................................................................TCTTTGGTATTCTAGCTGTAGAA...............................................................................................................................................23129933.0029933000001820510210000000718420160000000552429583634611073221649184766807841120000000000000000000000019720516716911644781491355202482413465602810121915183123713163353600600101000604404781218871120156396452465148161147278173154130176010014558623013600345162001700017050605002410212442342613551821132206594171005100863261142221312796861260137016131217572412810166201790035151130618311421318171763125327945820577112653840451917725876120169518482020475313252938216712517145372547512855307544981513112156816752211248125412791481210613312156021687945423192455884
..........................................................................................TCTTTGGTATTCTAGCTGTA..................................................................................................................................................20123576.00235760000400110100100000016287160971283119342214781714181815138614013112324336310314329154500300000000000000000003347333511842226548421332128211500151821471320526110224326281505017140108491516447459812181617381879884826838280827227556913146546131750133721731963022161473932198177190125598427213810541602401190246202001268518011100375427222112575542450720125939136325682610915600002024811148775131254172272131532481233471138514440971557316510122137082638372268282057372080352316664884355851421201445122844026146948189901238710262635655378702495673127397824633522388796781981021101522765635648
..........................................................................................TCTTTGGTATTCTAGCTGTAGATC..............................................................................................................................................24122521.00225210000000000000000000000000000000000000001020000001010000000000000000000000000100000000010000000000000000000000000000000000000000000020000010000010000000002000000000000000000000000000000000100000000000000010000003005100333643270000156476758000000000000000000000000201100021000143639250000200000000005102010000202000100000000000010003010
..........................................................................................TCTTTGGTATTCTAGCTGTAGC................................................................................................................................................22117508.001750800000000001000000000450111040000000331791571028335698164394202182411420000000000000000000000001312580100103220111141500000100270100010021218902000008020140061378101038163430616121496119482684814811691511002133483070000000010014300311419000012400010729000000304155310238971611111100001020055196498114843642930361115726661669264950410747937251203171167711210477719911051445719358423604696493762275359179943733275211452391196775112389131241353047121281911436370970
............................................................................................TTTGGTATTCTAGCTGTAGATT..............................................................................................................................................22110466.0010466000000000000020000003500022600000001912164551538150168111815511980900000000000000000000069460001202002010102200000001521100100000000000200020000000104051326664476232421724423651211235131070800010400050101000010802211415000113390002213700400021141014270101714974582492751371073512700300000332701725122201821201153273181534918129057213958133913533828546654455105793993646134961687401236774120308154356477105321721652441931971313011216056209154107185201110617385326142132275661370
..........................................................................................TCTTTGGTATTCTAGCTGTAGT................................................................................................................................................2219739.00973900000000000011100000020522400000000271826341431411263036662581316281473100000000000000000000000242911301152129981150072415500679431211143502000606200000315014500311311322017101844837335383489287634867171301107021017180160035130501501143192324328500103930000023720001004101119716485322535691311354001010018902844553461921810135151138567661626952999788178611261634810813685610441985116264716103721417111210233410149161054260452603124222785106175691634171997013631117142910301625523797280
..........................................................................................TCTTTGGTATTCTAGCTGTAGAAAA.............................................................................................................................................2519593.00959300000013000000000000926200000000000182546013114251123754032276293000000000000000000000002223045984320001000007000002000031500030021010000000000000001103110054242266127679628119194551112181700000000000200200010100000000000191148790006104290000016759801000010021271543055205912313370000000009415000000003100200000201114244111392114622680732312354717651030000028500051108244117206020111372564440120001103012036861461000110
..........................................................................................TCTTTGGTATTCTAGCTGTAGATA..............................................................................................................................................2418669.0086690000001000010000000013700000000000213152191652514103322271717111580000000000000000000000023370141412413010100000600000000123502030040020002010000010431014119110267568984829553825301192421191210000004022020003000000000000022012400103124813226132941000100100146425188629237030111995524181280100239200011081215100040110121003172060104331612473411861258331591103001101100001831664373020001114727791025061330000934312436234410
..............................................................................................................................................TAAAGCTTTTATACCAAAGCT.............................................................................................2118302.0083020000000000000110000042813003002270920072734352446143553241939133734664951150000000000000000000000029530325020103061385510112141000147015262849693231360300000000111770021001013276454691136785050462912111718000002815543721272409103098277213040208136062421120003133300000851000000114410116141424205786783081154628000174000012161513611213601465561060131725121413210529803720171260383391384531138155116111478141619320309368362211100174781323512251543071002302661310715200
............................................................................................TTTGGTATTCTAGCTGTAGA................................................................................................................................................2017755.00775500000000000000000000614201090100000626215210161021242211503034252325651200000000000000000000000161610140000414300000000000000001220000000000000000000001000012971208506758511297309939928828129142283911417096101301000648100000013041153192101121000201338000000212432133963671155106524614972080000167152219189213819361266161064715323804417414213105228139171324473255344116291192037752310212544517539138227161759151381169265913025376666278012244540211549218919311
..........................................................................................TCTTTGGTATTCTAGCTGTAT.................................................................................................................................................2117334.007334000011000100010000003485601084000000001726124610191234191534342811192824510000000000000000000000065412031112055104002422001000003710100001040000100013128160040011210761531442736106121103106101511616163512442151430511221022062026050123022610307215181881800307200000055228003011311236314136171311717221301001950451874612845202712716107274226228431945311403592713573321485851002026717766203591931401712813537921538992476633710872192735241411153142614365117325798161019811130301350
..........................................................................................TCTTTGGTATTCTAGCTGTAA.................................................................................................................................................2115332.005332000066151000010010000271100000000003419834157121217761260000000000000000000000000621212262900001802131100051101353234002042000111010020010012433623334026151028572101520600100400200419070022020305014020810251814400911280000092900110061136133448119205410139139000101005506302233204611271302638722713167361015755913845114054465228115562316261521751364195992761181302318161649211442011214213432284189291413522116142671260
................................................................................................................TTGTTT-CA---CGCACATTGTATATCATC..................................................................................................................2615260.005260000000000000000000000010000010000001302003172202224121600000000000000000000000815680200112001000102000220040500001300200000010000100419300112023022024122732789000000000000010000000011008020000010200400000000113100000000011400864643201336520290405143113616314000000020152201306004514002122020450010000010000021000064000072005050030031901000001200001000413100
..........................................................................................TCTTTGGTATTCTAGCTGTAGATT..............................................................................................................................................2415077.00507700000100000100000000322000300023000242315712708511661413100031200000000000000000151771700000214010002117000000165102020004000000101102101154014100214328111741213020512133712132604200854250100140203075000120467195411000152781321002232500000017307141651138943811148051194400611800122207111274316632321703781315353192517131310521576921256267582171925191424535590201438315551100147511285118128651048025452937178012264631029129282215471311327360
..........................................................................................TCTTTGGTATTCTAGCTGTAGG................................................................................................................................................2215064.0050640000011001001000100031000010000000169342120932733422864191388000000000000000000000003424040416420310030630059001558043510100100000000001100664665190216162082120672106181412000011104306010210011200120053262550040030000019530001000313921311613281085613223000098020081522149305105299176547131323369172337136411635911126791517100407610143182230353221286727152218815686261115914570247016121740191448522682413142211551530
...........................................................................................CTTTGGTATTCTAGCTGTAGA................................................................................................................................................2114924.00492400000001000000000000082000410000000317242121483813620162476000020000000000000000001025814010505251040111410081003427031100180010001010100002027101813101425222012135233383453116381842100304004211000116110205000430315111000122100000015220000009183117321366239191207287242010000003100033220102663630643131191811561011212112525482638238059340524271222177111115819433117117005231816315040125613101435161744154111211815241317412
...........................................................................................CTTTGGTATTCTAGCTGTAG.................................................................................................................................................2013672.003672000000000002000000000502001200000016431033210521576320000000000000000000000044330402312302012112300134040010000100001000000000000000305305031381511106751154324101115002110815046401335031000401106179520030215000001600100076355166748177847446790000000010110140120211112303105257218371041110544274315654263822232301159543992114415582280291762317113131491047851731175782498826211214447406
............................................................................................TTTGGTATTCTAGCTGTAG.................................................................................................................................................1913578.003578000000000000000001008134000421891010014313561251443048533150000000000000000000000005262010020010000001100020100010020110000000000000000001200000411420435316328101983132211510240110115301100540141114130100509144951450080224000000100030003826641291242483724183050060000540030241123573344574113891314061718193170488412681822528182619412899101324864184951164081357318655796618611463051219567518918252014297921150
..........................................................................................TCTTTGGTATTCTAGCTGT...................................................................................................................................................1913471.00347100000000000000000000440111040323700710421156250442653000020000000000000000000172519130005001410120015200401203462000101004401012105124151416622200003212570215697973464502017182310512320420272336212302010115328119500707220002117002100911418111531255731351722197210278000083343421617206383532144591260144168215318619421712363145314480319831172611281251076122131820152453253523137374533587161327331931125259221519327252652
..........................................................................................TCTTTGGTATTCTAGCTGTAC.................................................................................................................................................2113018.0030180000000000000200000000000000000000010041120010323221110100000000000000000000000100100000000010000100002000100000000101000000001000001000301031489678175642794180000060100001305000201001000500031296000201500000270000004000013272422224219264410000000100001061002201063021033583191358009550810729151275398341583296331135211343013527160561627101112421813887144751197303214796931721140
..........................................................................................TCTTTGGTATTCTAGCTGTAGAC...............................................................................................................................................2312687.00268700000000000000000000240000000000001576211655517011124960000000000000000000000009105901402100001000010001100103002000001000000000000000010322220014191032178722138181130000200132100100010000010010301015270002110111039121000000002921135944303556873310131111836700200120340000230013050085591189147830341954218536208341570831410107301105581344926121483846408156131724170013594652228100
............................................................................................TTTGGTATTCTAGCTGTAGAT...............................................................................................................................................2112384.0023840000000000000000000002210060000000131104118200573474300000000000000000000000887300000003000001021000020001002000000010000001000010000012140133694195108358632888131004000100002102000200202041411000001100000660000001511480445233094814531122800222004311014320030201411431615502671813454231552913919135352039582151231156221922039226921141420305132179431111827181133211133431621359130
..........................................................................................TCTTTGGTATTCTAGCTGTAGATATC............................................................................................................................................2612159.00215900000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001532626000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................TTGGTATTCTAGCTGTAGA................................................................................................................................................1912091.00209100000000000000000000116000010000000011032122102225513100000000000000000000000895800000012000000000000000001300100000000000000010100013302271011616661317141105161214500000000110200000510000000100320010002012401000120000001311317610461350140010000001000000000011001112003207014264930794793317525205262221483030001410140178110321511316442465391116311600010631417620
..........................................................................................TCTTTGGTATTCTAGCTGTAGATAA.............................................................................................................................................2511524.0015240000001210000000000025000000000000112451000141005110230000000000000000000000000010410748000000000400000000110000010020000000000000001000501202323061293130300300000000000000000000000000000100115013000110200000254300000000012124121105254229920000100020000001000000000001002010010010004316526714321014580011000101810004163318410000005235541200200111001074412000010
..........................................................................................TCTTTGGTATTCTAGCTGTAGATAAA............................................................................................................................................2611192.001192000000010000000000000340000000000002272001121205200000000000000000000000000000000530040000000001000007000001000100900000000000000000020000041420254531012013200000000000000000000000000000000001201300003060001017420000000005010265114316117570000000000000000000000000000010001000000004110817653816942100010000030000492716360000104522601000001000000031428000000
..........................................................................................TCTTTGGTATTCTAGCTGTAGAG...............................................................................................................................................2311136.001136000000000000000000002010000000000003124612012644422330000000000000000000000036220300100000000100000000000000010000401000000100001208732244046921626415091350010000010010000000000104000010016490000004100208160020000001612111631912243174600000000100110210000001100010130352441331016501129136312640411400001111112946172807122265047734320942241060314854115640
..........................................................................................TCTTTGGTATTCTAGCTGTAGACA..............................................................................................................................................241950.00950000000000000000000001110000000000000031011200204120010000000000000000000000000000023000000000000000000000000000000000000000000000000000021001284312020111120000000000000000000000000000000001030000000000001900000000001103292110403924560000000001011100000000000000001000100211002115511691714143800000000014000052715371701000021514101100210100003632000200
..............................................................................................................................................TAAAGCTTTTATACCAAAGCTT............................................................................................221900.0090000000020010100000000000000000000000010000000000000000000000000000000000000002372311921650200012320020000000000162590102000100000000000000000000000011000000000000000000000100010000030000020000000000000000000000000000000000100100530001100000000000010000000000000000000000000001010202000001000000000100000000000100000000000000000000000000
.............................................................................................TTGGTATTCTAGCTGTAG.................................................................................................................................................181839.008390000000000000000000033000001000000001001010000100100000000000000000000000000222000000000000000000000000002000000000000000000000000212000000213401606111120200000000000001010344000000063001111300000030000001000000010329502000033000000001000001200000000001001001108300510222061588879969212001100050014121711402243822134427321612702101321207010
..............................................................................................TGGTATTCTAGCTGTAGA................................................................................................................................................181634.0063400000000000000000000411000000000000000000011000100004000000000000000000000000537100000000000000000000000000000000000000000000000000010000020041543725402470121000000001000000100000000001003801000000000040240000000012523011000100001000010000000000000011001000001053202003121935024026101000010022002152421020026154202100000300000000003200
..........................................................................................TCTTTGGTATTCTAGCTGTAGAAC..............................................................................................................................................241597.005970000000000000000000002000000000000000200111320112176020000000000000000000000000010010000000000000000000000000000000000010000000000000100000002710390301001310000000000000000000000000000000010500010000000000020000000003000018735420000043100000010001000020000001010100010000101788124111436170000101004100015410383110000166700010000100001102003020
..............................................................................................................................................TAAAGCTTTTATACCAAAGC..............................................................................................201521.0052100000000010000000000010000000000002300211000103000014000000000000000000000000687080390006210100000011000010011513140010000000000000001000330000005210012102002200000000200000000014050002000000110000000000100000000000000010100191900020111010000000000001000001000300000001041111101121326050000500001000200100011110001200100000000010000105030
..........................................................................................TCTTTGGTATTCTAGCTG....................................................................................................................................................181491.004910000000000000000000034000000101010011400000010100000100000000000000000000000713390000010000000102000000001020000000001000000000200045766011024102002120111101101000030000402000001103020208302210100001000000230000000031032122365211222221000100200000000011021001161630106324711236231404209231235001364311120040313100011000000000202618002
...........................................................................................CTTTGGTATTCTAGCTGTAGAT...............................................................................................................................................221375.003750000000000000000000000100010000000000101120011100021300000000000000000000000121515600000000001000000000000111000020000000000000000000010000000001002311101001001000120000000000000000000000000000120100000000044000000000321010691610842800000000000001000010000000000000000011000041861122211300001000000000039080301122189113100200100000100104018
..........................................................................................TCTTTGGTATTCTAGCTGTAGATAT.............................................................................................................................................251351.0035100000000000000000000000000000000000000000100000000001000000000000000000000000001010000000000000000000000000000010000000000000000000000001002400000000000200000000000000010000000000000000100100000100000000000000000001003463438413728360000285001000000000000000000000000002010011162115180010000100000002100000000000200000010000100020000300
.............................................................................................................................................CTAAAGCTTTTATACCAAAGCT.............................................................................................221324.0032400000000000000000000010100200000000121142111020105201000000000000000000000005135000001010000000000000000010020000000000000000000000000000000110013120030000000000000001010000000002100000500010000000000000000000000022002048540103460080000100101130000000010000010210041111320301260110011500000000103200030003211100350101200000000003000
..............................................................................................................................................TAAAGCTTTTATACCAAAGCTCA...........................................................................................231319.003190000000100000100000000000000000000000111000001000000000000000000000000000000493632270224140543000001010000180114272811021001100000000000000000000000000000011000000000000000000000000000000000000000000000000000000000000000000000000230106100000000000000000000000000000000000000000010003000000000001000000000000000000000000000000000000000000
..........................................................................................TCTTTGGTATTCTAGCTAG...................................................................................................................................................192312.00624000000000000000000000100000000000001000012100002010000000000000000000000000001010000000000000100000000000000000001000000000001000000000000004361063623020000010010002500101020243102000303005167120002006000007270000006142403123166143411000000000200001000000000000001000002002000072113020842861375113101400120200010202510211471017943322726106129134620
..........................................................................................TCTTTGGTATTCTAGCTGTAGAAG..............................................................................................................................................241300.003000000000000000000000002000000000000001000010000012001000000000000000000000000021000000100000000001000000000000000000000000000000000000300100123000102202000000000000000000000000000100000001000000001200000391000000003100613595102340000000001000000000012000000000000010011001125162261811110000000021000261211000000037101010000300001001101010
..........................................................................................TCTTTGGTATTCTAGCTGTAGTAA..............................................................................................................................................241298.00298000000000000000000000000000000000001011000010401310010000000000000000000000000000000010000000000000000000000000000100000000000000000100001001312571150402000000000000000100000000000100000001200000001000000150000000000000000011030000000000010000000000100001000000000110006693194641130001000011000001734100000113000000000000011200001000
............................................................................................TTTGGTATTCTAGCTGTAGAAA..............................................................................................................................................221296.00296000000000000000000001000000000000002020100011403000100000000000000000000000000000000000000000000000000000000000000000000000000000000003000059715311110000000000000000000000000000000000000001010000000000000120000000000100202010020000000000000000000000000000000001010000001013738412030000000001100002715000000332000000010000001501000000
..........................................................................................TCTTTGGTATTCTAGCTGTAGAGA..............................................................................................................................................241290.002900000000000000000000000100000000000000030000200002000000000000000000000000000000002000200000000020000000000000010000000000000000000024000110011100010002020000000000000000000000000000000001301000000000000316000000000310035025035000000000000000000000000000000101100000000831918939314000001000600003573600100001312001000110210102214100000
..........................................................................................TCTTTGGTATTCTAGCTGTAGCAA..............................................................................................................................................242288.505770000000000000000000000000000000000001100000002015100100000000000000000000000000000000000000000000000000000000000000000000000000000011000200375931010001001000000000000000000000000000000000011000000000000160000000000000100000070000000010000000000000100000000001010010112012775381312180000000014000045844215000000024000000000000000301002000
..........................................................................................TCTTTGGTATTCTAGCTGTATG................................................................................................................................................222288.005760000000000000000000010010000000000000001010100021001010000000000000000000000011300100000100000001000000000000000000001000020000001000100001017701365540100000000000000120100000000000000100001310000100000018000000110010000000000000000004104113410002010450200953901188852093252033517500100312321261013518624121111010161921522052019006001101012000
............................................................................................TTTGGTATTCTAGCTGTAGATC..............................................................................................................................................221282.002820000000000000000000010000000000000000000000000011000000000000000000000000000413100050000000000000000000000000000000000000000000000000000000000000010011010000000000000000000000000000000001100000000000000311000000000021000000000000013462000000000000000000000000000000000000325647290010000000000100101000001000010000010000000000010000
............................................................................................................................................TCTAAAGCTTTTATACCAAAGCT.............................................................................................231277.00277000000000000000000000000002000000000331202200202110000000000000000000000000000320000000000000100000000000000000000000000000000000000000000000300120020010100000000020000000000000020000002010000000020000040000000000010032343520037400000001011000120000100200000010000071100019575192102010100010000000310000019011100000000000000000100000
..............................................................................................................................................TAAAGCTTTTATACCAAAGCTA............................................................................................221275.00275000000410001000000000000000000000000000001100001000010000000000000000000000043453542080239020010000210001105514153111200700000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000100000140204000000000000000000000000000100000000000000000000000000
..........................................................................................TCTTTGGTATTCTAGCTGTAGATTG.............................................................................................................................................251270.00270000000000000000000000210000000000001000400011002310100007540000000000000000000000000020000000000000000000000000000000000000000000020000300209381121300440200000000000000000000001201000000021206000101000004000120000121003033422000000000005000000000000000000000000000000000111200000101000300100223401200008510200000000000002204000010
..............................................................................................................................................TAAAGCTTTTATACCAAAG...............................................................................................191251.00251000000000000000000000000000000000010120000000000010100000000000000000000000015115120206420600000011000242085101432020011000000000000200020000010201601100000070000001060000000000101000100402001100000001000000000000000005000011301021101000000000001000110220112000000102000011041304030000401001000100300000022000000000000000100000049000
droSim2
-TTTTTTTT----TCGGTTCTTTGCTCACATTTCTCCTC-T----TGCACT------------ATT--------TATCATTTTTGCTGTTTCTTTGGTATTCTAGCTGTAGATTGTTT-CA---CGCACATTGTATATCATCTAAAGCTTTTATACCAAAGCTCCAGCTTAAATTGCTTAACAACGCACCAA-----------------------CCC----------A----AAACAGCCACAAATACAGGAATGSizeHit CountTotal NormTotalM023

Head		M024

Male-body		M025

Embryo		M053

Female-body		O001

Testis		O002

Head		SRR553485

Ovary		SRR553486

Ovary		SRR553487

Ovary		SRR553488

Ovary		SRR618934

Ovary		V044

Embryo		SRR902008

Ovary		SRR902009

Testis		SRR1275487

Male larvae		SRR1275485

Male prepupae		SRR1275483

Male prepupae
..........................................................................................TCTTTGGTATTCTAGCTGTAGA................................................................................................................................................2211354901.001354901162797162102358228440038133229384834374315324626288408924591205131322
..........................................................................................TCTTTGGTATTCTAGCTGTAG.................................................................................................................................................211781402.007814023128592387171480100020877118052115718596408949171565171100123
..........................................................................................TCTTTGGTATTCTAGCTGTAGAAA..............................................................................................................................................241175737.001757378396794326570026579205827848336034262644917034001
..........................................................................................TCTTTGGTATTCTAGCTGTAGAA...............................................................................................................................................23145225.0045225100371789131400847570131638393853706919098011
..........................................................................................TCTTTGGTATTCTAGCTGTA..................................................................................................................................................20137788.003778816057167960096897753951658324451181130215
..........................................................................................TCTTTGGTATTCTAGCTGTAGAAAA.............................................................................................................................................25123262.002326224460496002169169611182679243514111000
..........................................................................................TCTTTGGTATTCTAGCTGTAGG................................................................................................................................................22120268.0020268188898117137140040386518711600000
..........................................................................................TCTTTGGTATTCTAGCTG....................................................................................................................................................18114763.00147633136105792891003782842111112480079527
..........................................................................................TCTTTGGTATTCTAGCTGTAGAT...............................................................................................................................................23110627.00106272101111120347001845165029101983371293318000
..........................................................................................TCTTTGGTATTCTAGCTGTAGATA..............................................................................................................................................2418570.0085700417045002286173429521332321320000
..........................................................................................TCTTTGGTATTCTAG.......................................................................................................................................................1515120.00512000000012047417954051972011001
............................................................................................TTTGGTATTCTAGCTGTAGA................................................................................................................................................2012386.0023861024610200889896234127501884000
..........................................................................................TCTTTGGTATTCTAGCTGTAA.................................................................................................................................................2112342.0023421646034002552531033620422221000
..........................................................................................TCTTTGGTATTCTAGCTGTAGATAA.............................................................................................................................................2512295.0022950027600201151109080312500000
..........................................................................................TCTTTGGTATTCTAGCTGT...................................................................................................................................................1912169.0021691343912713004503683802144161417213
...........................................................................................CTTTGGTATTCTAGCTGTAGA................................................................................................................................................2112121.00212191271805006140905923410100
............................................................................................TTTGGTATTCTAGCTGTAGATT..............................................................................................................................................2211939.0019394710161400708581229147322000000
..........................................................................................TCTTTGGTATTCTAGCTGTAGATAAA............................................................................................................................................2611660.001660001320001381278634935100000
..........................................................................................TCTTTGGTATTCTAGCTGTAGAC...............................................................................................................................................2311509.0015091811251160037026835718328601000
..........................................................................................TCTTTGGTATTCTAGCTGTAGT................................................................................................................................................2211218.00121828217618638009370148134542719000
..........................................................................................TCTTTGGTATTCTAGCT.....................................................................................................................................................1711048.00104800000012495113644530043128136
.............................................................................................TTGGTATTCTAGCTGTAGA................................................................................................................................................1911033.001033001480092754254743320000
..........................................................................................TCTTTGGTATTCTAGCTGTAGATT..............................................................................................................................................2411027.00102733278313002732282501018308000
...........................................................................................CTTTGGTATTCTAGCTGTAG.................................................................................................................................................201839.008399113607006049523310500000
..........................................................................................TCTTTGGTATTCTAGCTGTAGAG...............................................................................................................................................231735.007351035290014712323513425411000
..........................................................................................TCTTTGGTATTCTAGCTGTAC.................................................................................................................................................211698.006981954232760044511499100000
............................................................................................TTTGGTATTCTAGCTGTAGAT...............................................................................................................................................211681.0068160212002222281186715101000
............................................................................................TTTGGTATTCTAGCTGTAG.................................................................................................................................................191672.00672100623002412456437281413000
..........................................................................................TCTTTGGTATTCTAGCTGTAGAAC..............................................................................................................................................241619.00619302513007079132675324000
..........................................................................................TCTTTGGTATTCTAGCTGTAGACA..............................................................................................................................................241607.00607102084003845210980300000
...............................................................................................GGTATTCTAGCTGTAGA................................................................................................................................................171598.00598000000652230535000000
..............................................................................................TGGTATTCTAGCTGTAGA................................................................................................................................................181579.0057900010022103131484000000
..........................................................................................TCTTTGGTATTCTAGCTGTAGC................................................................................................................................................221558.005583413431007869178107211301000
..........................................................................................TCTTTGGTATTCTAGCTGTAGAAG..............................................................................................................................................241536.005360199110085891686710600000
..............................................................................................................................................TAAAGCTTTTATACCAAAGCTC............................................................................................221446.004461001700136530846734000
................................................................................................GTATTCTAGCTGTAGA................................................................................................................................................161393.003930000001273527312000000
..........................................................................................TCTTTGGTATTCTAGCTGTAT.................................................................................................................................................211359.003598424800062662114522701000
...........................................................................................CTTTGGTATTCTAGCTGTAGAAA..............................................................................................................................................231288.00288000238005623133000000
.............................................................................................TTGGTATTCTAGCTGTAG.................................................................................................................................................181282.0028220850036271917165300000
............................................................................................TTTGGTATTCTAGCTGTAGAAA..............................................................................................................................................221236.002360041200583978367200000
..............................................................................................................................................TAAAGCTTTTATACCAAAGCT.............................................................................................211227.002271133800321613141900000
..........................................................................................TCTTTGGTATTCTAGCTGTAGAAAC.............................................................................................................................................251217.002170039200332569432220000
.................................................................................................TATTCTAGCTGTAGA................................................................................................................................................152214.5042900000079621882575000000
............................................................................................TTTGGTATTCTAGCTGTAGAA...............................................................................................................................................211183.00183001600695824231010000
...............................................................................................GGTATTCTAGCTGTAG.................................................................................................................................................161176.001760000002334164000000
..............................................................................................TGGTATTCTAGCTGTAG.................................................................................................................................................171157.0015700000054158125000000
...........................................................................................CTTTGGTATTCTAGCTGTAGAA...............................................................................................................................................221157.0015700312900331090000000
............................................................................................TTTGGTATTCTAGCTGTAGATA..............................................................................................................................................221152.001520019000523624173100000
..........................................................................................TCTTTGGTATTCTAGC......................................................................................................................................................161150.0015000000034351090014318
................................................................................................GTATTCTAGCTGTAG.................................................................................................................................................151119.001190000004167101000000
..........................................................................................TCTTTGGTATTCTAGCTGTAGAGA..............................................................................................................................................241114.001142015100242131137000000
............................................................................................TTTGGTATTCTAGCTGTAGATC..............................................................................................................................................221102.00102315000012090000000
..........................................................................................TCTTTGGTATTCTAGCTGTAGAAAT.............................................................................................................................................25180.00800050005826323001000
..........................................................................................TCTTTGGTATTCTAGCTGTAGACAA.............................................................................................................................................25175.00750010007634234000000
..................................................................................................................................................GCTTTTATACCAAAGCTC............................................................................................18173.0073000000000073000000
..........................................................................................TCTTTGGTATTCTAGCTGG...................................................................................................................................................19172.00722174200000002000000
............................................................................................TTTGGTATTCTAGCTGTAGATTA.............................................................................................................................................23164.0064001000251810100000000
..........................................................................................TCTTTGGTATTCTAGCTGTAGATG..............................................................................................................................................24161.006100100025121193000000
............................................................................................TTTGGTATTCTAGCTGTAGAAAA.............................................................................................................................................23161.006100020012102692000000
............................................................................................TTTGGTATTCTAGCTGTA..................................................................................................................................................18161.006100000022206211000000
...................................................................................................................................................CTTTTATACCAAAGCTC............................................................................................17161.0061000000000061000000
..........................................................................................TCTTTGGTATTCTAGCTGTAGATAT.............................................................................................................................................25159.00590000001992190010000
..........................................................................................TCTTTGGTATTCTAGCTGTAGTAA..............................................................................................................................................24158.00580002005425162400000
..........................................................................................TCTTTGGTATTCTAGCTGTATG................................................................................................................................................22257.501151021001000109100000
..........................................................................................TCTTTGGTATTCTAGCTGTGA.................................................................................................................................................21156.0056112000633832000000
...........................................................................................CTTTGGTATTCTAGCTGTAGAT...............................................................................................................................................22155.0055003220089625000000
.............................................................................................TTGGTATTCTAGCTGTAGAAA..............................................................................................................................................21251.5010300310069111657000000
.............................................................................................TTGGTATTCTAGCTGTA..................................................................................................................................................17150.0050000000540140000000
..........................................................................................TCTTTGGTATTCTAGCTGTAGAACA.............................................................................................................................................25145.00450011000451960000000
..........................................................................................TCTTTGGTATTCTAGCTGTAGATC..............................................................................................................................................24142.00420070009111122000000
...........................................................................................CTTTGGTATTCTAGCTGTAGAAAA.............................................................................................................................................24140.0040000320020230100000
..........................................................................................TCTTTGGTATTCTAGCTGTG..................................................................................................................................................20138.0038128000304317000000
..........................................................................................TCTTTGGTATTCTAGCTGTAGATTA.............................................................................................................................................25138.0038000000129980000000
....................................................................................................................................................TTTTATACCAAAGCTC............................................................................................16135.0035000000000035000000
..................................................................................................................................................GCTTTTATACCAAAGCT.............................................................................................17135.0035000000000035000000
.............................................................................................TTGGTATTCTAGCTGTAGAT...............................................................................................................................................20131.003100000056857000000
..........................................................................................TCTTTGGTATTCTAGCTGC...................................................................................................................................................19230.50613032700000000010000
..........................................................................................TCTTTGGTATTCTAGCTGTAGGAA..............................................................................................................................................24130.0030001100121182400000
.............................................................................................TTGGTATTCTAGCTGTAGAA...............................................................................................................................................20130.003000100063866000000
............................................................................................TTTGGTATTCTAGCTGTAGATAA.............................................................................................................................................23127.0027000000371160000000
............................................................................................TTTGGTATTCTAGCTGTAGATTAAA...........................................................................................................................................25127.0027000000471240000000
.........................................................................................TTCTTTGGTATTCTAGCTGTAG.................................................................................................................................................22126.0026000110043611000000
..........................................................................................TCTTTGGTATTCTAGCTGTAGTA...............................................................................................................................................23125.002521400014741100000
..........................................................................................TCTTTGGTATTCTAGCTGTAGATAC.............................................................................................................................................25124.002400400096320000000
...................................................................................................................................................CTTTTATACCAAAGCT.............................................................................................16124.0024000000000024000000
droSec2
-TTTTTTTTTTTTTCGGTTCTTTGCTCACATTTCTCCTC-T----TGCACT------------ATT--------TATCATTTTTGCTGTTTCTTTGGTATTCTAGCTGTAGATTGTTT-CA---CGCACATTGTATATCATCTAAAGCTTTTATACCAAAGCTCCAGCTTAAATTGCTTAACAACGCACCAA-----------------------CCC----------A----AAACAGCCACAAATACAGGAATGSizeHit CountTotal NormTotalM054

Female-body		V113

Male-body		V114

Embryo		V115

Head
..........................................................................................TCTTTGGTATTCTAGCTGTAGA................................................................................................................................................22141461.0041461256263162103502323
..........................................................................................TCTTTGGTATTCTAGCTGTAG.................................................................................................................................................21128410.00284109292621667976105
...........................................................................................CTTTGGTATTCTAGCTGTAGA................................................................................................................................................2112150.00215021311171
..........................................................................................TCTTTGGTATTCTAGCTGTAGAAA..............................................................................................................................................2411311.00131134547808111
..........................................................................................TCTTTGGTATTCTAGCTGTAGAA...............................................................................................................................................231828.00828634917411
...........................................................................................CTTTGGTATTCTAGCTGTAG.................................................................................................................................................201760.00760754042
..........................................................................................TCTTTGGTATTCTAGCTGTAGAT...............................................................................................................................................231612.006124492811223
..........................................................................................TCTTTGGTATTCTAGCTGTA..................................................................................................................................................201364.00364187753567
............................................................................................TTTGGTATTCTAGCTGTAGA................................................................................................................................................201178.00178118153411
..........................................................................................TCTTTGGTATTCTAGCTGTAGAAAA.............................................................................................................................................251117.00117522594
..........................................................................................TCTTTGGTATTCTAGCTGTAT.................................................................................................................................................211117.00117106524
..........................................................................................TCTTTGGTATTCTAGCTGTAGT................................................................................................................................................221106.001065025922
..............................................................................................................................................TAAAGCTTTTATACCAAAGCT.............................................................................................21197.0097730177
............................................................................................TTTGGTATTCTAGCTGTAG.................................................................................................................................................19186.00862743025
..........................................................................................TCTTTGGTATTCTAGCTGTAA.................................................................................................................................................21173.007354487
..........................................................................................TCTTTGGTATTCTAGCTGTAGATA..............................................................................................................................................24168.0068343247
..........................................................................................TCTTTGGTATTCTAGCTGT...................................................................................................................................................19166.00663411021
..............................................................................................................................................TAAAGCTTTTATACCAAAGCTC............................................................................................22162.006254251
..........................................................................................TCTTTGGTATTCTAGCTGTAGATT..............................................................................................................................................24158.005819161211
............................................................................................TTTGGTATTCTAGCTGTAGATT..............................................................................................................................................22158.005859377
...........................................................................................CTTTGGTATTCTAGCTGTAGAA...............................................................................................................................................22146.004646000
..........................................................................................TCTTTGGTATTCTAGCTGTAGG................................................................................................................................................22143.0043154204
...........................................................................................CTTTGGTATTCTAGCTGTAGAT...............................................................................................................................................22134.003433010
..........................................................................................TCTTTGGTATTCTAGCTGTAGAC...............................................................................................................................................23133.003324063
.............................................................................................TTGGTATTCTAGCTGTAGA................................................................................................................................................19129.002927110
..........................................................................................TCTTTGGTATTCTAGCTGTAGAG...............................................................................................................................................23123.002315080
...........................................................................................CTTTGGTATTCTAGCTGTAGAAA..............................................................................................................................................23120.002019010
.........................................................................................TTCTTTGGTATTCTAGCTGTAGA................................................................................................................................................23118.001818000
..........................................................................................TCTTTGGTATTCTAGCTGTAC.................................................................................................................................................21115.00156513
..........................................................................................TCTTTGGTATTCTAGCTGTAGATAA.............................................................................................................................................25115.00156072
..........................................................................................TCTTTGGTATTCTAGCTG....................................................................................................................................................18115.00158034
..........................................................................................TCTTTGGTATTCTAGCTAG...................................................................................................................................................19214.502986114
............................................................................................TTTGGTATTCTAGCTGTAGAT...............................................................................................................................................21114.001410202
..........................................................................................TCTTTGGTATTCTAGCTGTAGC................................................................................................................................................22112.00122613
..............................................................................................TGGTATTCTAGCTGTAGA................................................................................................................................................18111.001111000
...........................................................................................CTTTGGTATTCTAGCTGTAGG................................................................................................................................................21111.001111000
..........................................................................................TCTTTGGTATTCTAGCTGTAGAAC..............................................................................................................................................24111.001110100
.........................................................................................TTCTTTGGTATTCTAGCTGTAG.................................................................................................................................................2219.0099000
...........................................................................................CTTTGGTATTCTAGCTGTA..................................................................................................................................................1919.0099000
............................................................................................TTTGGTATTCTAGCTGTAGAAA..............................................................................................................................................2218.0082051
.............................................................................................TTGGTATTCTAGCTGTAG.................................................................................................................................................1818.0085030
..........................................................................................TCTTTGGTATTCTAGCTGTAGATAAA............................................................................................................................................2617.0071060
..........................................................................................TCTTTGGTATTCTAGCTGTAGAGA..............................................................................................................................................2417.0071150
..........................................................................................TCTTTGGTATTCTAGCTGTATG................................................................................................................................................2226.001210110
................................................................................................................TTGTTT-CA---CGCACATTGTATATCATC..................................................................................................................2616.0061041
..........................................................................................TCTTTGGTATTCTAGCTGTT..................................................................................................................................................2016.0062301
..........................................................................................TCTTTGGTATTCTAGCTGTAGAAG..............................................................................................................................................2416.0063030
..........................................................................................TCTTTGGTATTCTAGCTGTAGACA..............................................................................................................................................2416.0063030
..........................................................................................TCTTTGGTATTCTAGCTGTATT................................................................................................................................................2216.0065100
...........................................................................................CTTTGGTATTCTAGCTGTAA.................................................................................................................................................2015.0055000
............................................................................................TTTGGTATTCTAGCTGTAGATA..............................................................................................................................................2214.0042020
..........................................................................................TCTTTGGTATTCTAGCTTAG..................................................................................................................................................2093.563226411
..........................................................................................TCTTTGGTATTCTAGCTGTGA.................................................................................................................................................2113.0032100
..............................................................................................................................................TAAAGCTTTTATACCAAAGCG.............................................................................................2113.0033000
...............................................................................................................................................AAAGCTTTTATACCAAAGCT.............................................................................................2013.0033000
............................................................................................TTTGGTATTCTAGCTGTAGAA...............................................................................................................................................2113.0033000
...............................................................................................................................................AAAGCTTTTATACCAAAGCTC............................................................................................2113.0033000
..........................................................................................TCTTTGGTATTCTAGCTGTAGTA...............................................................................................................................................2313.0031101
..........................................................................................TCTTTGGTATTCTAGCTGTAGAAAT.............................................................................................................................................2513.0031020
..............................................................................................................................................TAAAGCTTTTATACCAAAGC..............................................................................................2013.0032010
..........................................................................................TCTTTGGTATTCTAGCTGTAGACAA.............................................................................................................................................2513.0032010
...........................................................................................CTTTGGTATTCTAGCTGTT..................................................................................................................................................1912.0022000
................................................................................................................TTGTTT-CA---CGCACATTGTAT........................................................................................................................2012.0020002
..........................................................................................TCTTTGGTATTCTAGCTGTAGAAAC.............................................................................................................................................2512.0021010
...........................................................................................CTTTGGTATTCTAGCTGTAT.................................................................................................................................................2012.0022000
...........................................................................................CTTTGGTATTCTAGCTGTAGATT..............................................................................................................................................2312.0022000
..........................................................................................TCTTTGGTATTCTAGCTGTAGATC..............................................................................................................................................2412.0020110
..........................................................................................TCTTTGGTATTCTAGCTGTAGATG..............................................................................................................................................2412.0021010
..............................................................................................................................................TAAAGCTTTTATACCAAAG...............................................................................................1912.0020020
..........................................................................................TCTTTGGTATTCTAGCTGA...................................................................................................................................................1912.0020011
droYak3
-T-------------------------------------------TGCACT------------ATT--------TATCATTTTTGCTGTTTCTTTGGTATTCTAGCTGTAGATTGTTT-CG---CGCACATTGTATATCATCTAAAGCTTTTATACCAAAGCTCCAGCTTAAATTGCTTAACAGCGCACCAA-----------------------CCA--------------------------AAAA------CASizeHit CountTotal NormTotalM026

Head		M043

Female-body		M056

Embryo		V046

Embryo		V052

Head		V058

Head		V120

Male-body		SRR1275488

Male larvae		SRR1275486

Male prepupae		SRR1275484

Male prepupae		GSM1528802

follicle cells
..........................................................................................TCTTTGGTATTCTAGCTGTAGA................................................................................................................................................22148038.00480384624209311616833714637881203316480
..........................................................................................TCTTTGGTATTCTAGCTGTAG.................................................................................................................................................21136330.0036330132931123627743222961165331830008
..........................................................................................TCTTTGGTATTCTAGCTGTAGAA...............................................................................................................................................2312096.0020962660113975021270100
...........................................................................................CTTTGGTATTCTAGCTGTAGA................................................................................................................................................2111902.001902218583820110000
..........................................................................................TCTTTGGTATTCTAGCTGTAGAT...............................................................................................................................................2311309.001309100674459331215150010
..........................................................................................TCTTTGGTATTCTAGCTG....................................................................................................................................................1811131.0011311051345002061230
..........................................................................................TCTTTGGTATTCTAGCTGTAGAAA..............................................................................................................................................2411010.0010101153626916641090005
...........................................................................................CTTTGGTATTCTAGCTGTAG.................................................................................................................................................201980.009803968420030000
..........................................................................................TCTTTGGTATTCTAGCTGTAGG................................................................................................................................................221791.007916876816136100000
..............................................................................................................................................TAAAGCTTTTATACCAAAGCT.............................................................................................211659.00659019045652330000
..............................................................................................................................................TAAAGCTTTTATACCAAAGCTC............................................................................................221409.00409020719730000110
..........................................................................................TCTTTGGTATTCTAGCTGTA..................................................................................................................................................201370.003704814211515712231007
..........................................................................................TCTTTGGTATTCTAGCT.....................................................................................................................................................171235.0023500000002422090
..........................................................................................TCTTTGGTATTCTAGCTGTAGT................................................................................................................................................221197.001978059218217100000
................................................................................................................TTGTTT-CG---CGCACATTGTATATCATC..................................................................................................................261190.0019058155100000021
..........................................................................................TCTTTGGTATTCTAGCTGTAGATA..............................................................................................................................................241158.0015807662161120000
............................................................................................TTTGGTATTCTAGCTGTAGA................................................................................................................................................201149.00149210023122280000
..........................................................................................TCTTTGGTATTCTAGCTGTAC.................................................................................................................................................211134.001349303421310000
..............................................................................................................................................TAAAGCTTTTATACCAAAGCC.............................................................................................211132.001320013200000000
..........................................................................................TCTTTGGTATTCTAGCTGTAGAC...............................................................................................................................................231125.001255910640100000
..........................................................................................TCTTTGGTATTCTAGCTGTAGAAAA.............................................................................................................................................251110.001101781870110004
..........................................................................................TCTTTGGTATTCTAGCTGTAT.................................................................................................................................................211108.001081292355540000
..........................................................................................TCTTTGGTATTCTAGCTGT...................................................................................................................................................191102.0010236251714762130
..........................................................................................TCTTTGGTATTCTAGCTGTAGC................................................................................................................................................221102.00102411501232020000
............................................................................................TTTGGTATTCTAGCTGTAG.................................................................................................................................................19188.00880614102560000
..........................................................................................TCTTTGGTATTCTAGCTGTAGATT..............................................................................................................................................24172.007220182431330000
...........................................................................................CTTTGGTATTCTAGCTGTAGAT...............................................................................................................................................22165.0065062300000000
..........................................................................................TCTTTGGTATTCTAGC......................................................................................................................................................16162.0062000000060560
..........................................................................................TCTTTGGTATTCTAGCTGTAA.................................................................................................................................................21157.00572221583160000
...........................................................................................CTTTGGTATTCTAGCTGTAGAA...............................................................................................................................................22154.0054051300000000
.............................................................................................TTGGTATTCTAGCTGTAGA................................................................................................................................................19142.0042032720100000
...........................................................................................CTTTGGTATTCTAGCTGTAGAAA..............................................................................................................................................23140.0040036220000000
............................................................................................TTTGGTATTCTAGCTGTAGATT..............................................................................................................................................22137.0037942011020000
..............................................................................................................................................TAAAGCTTTTATACCAAAGC..............................................................................................20135.0035072800000000
.........................................................................................TTCTTTGGTATTCTAGCTGTAGA................................................................................................................................................23126.0026026000000000
..........................................................................................TCTTTGGTATTCTAGCTGTAGAG...............................................................................................................................................23123.0023110611130000
.............................................................................................TTGGTATTCTAGCTGTAG.................................................................................................................................................18122.0022119200000000
............................................................................................TTTGGTATTCTAGCTGTAGAT...............................................................................................................................................21120.002028810100000
............................................................................................................................................TCTAAAGCTTTTATACCAAAGCT.............................................................................................23118.0018011600100000
...............................................................................................................................................AAAGCTTTTATACCAAAGCTC............................................................................................21118.0018016200000000
..........................................................................................TCTTTGGTATTCTAGCTGTAGAAC..............................................................................................................................................24117.0017201410000000
..........................................................................................TCTTTGGTATTCTAGCTGTAGATAA.............................................................................................................................................25117.0017010430000000
...............................................................................................................................................AAAGCTTTTATACCAAAGCT.............................................................................................20115.0015013200000000
..........................................................................................TCTTTGGTATTCTAGCTGTAGACA..............................................................................................................................................24115.001513470000000
...........................................................................................CTTTGGTATTCTAGCTGTA..................................................................................................................................................19115.0015014100000000
..........................................................................................TCTTTGGTATTCTAGCTGTAGATTG.............................................................................................................................................25114.0014020001000011
.............................................................................................................................................CTAAAGCTTTTATACCAAAGCT.............................................................................................22113.0013001300000000
..........................................................................................TCTTTGGTATTCTAGCTGTAGATAAA............................................................................................................................................26111.0011010100000000
..............................................................................................TGGTATTCTAGCTGTAGA................................................................................................................................................18111.0011010100000000
............................................................................................................................................TCTAAAGCTTTTATACCAAAGC..............................................................................................22110.0010001000000000
..........................................................................................TCTTTGGTATTCTAGCTGTAGAAG..............................................................................................................................................2419.00904410000000
.........................................................................................TTCTTTGGTATTCTAGCTGTAG.................................................................................................................................................2219.00909000000000
..........................................................................................TCTTTGGTATTCTAGCTGTAGCA...............................................................................................................................................2317.00700700000000
................................................................................................................TTGTTT-CG---CGCACATTGTATATC.....................................................................................................................2317.00740300000000
..........................................................................................TCTTTGGTATTCTAGCTGC...................................................................................................................................................1926.501350800000000
..........................................................................................TCTTTGGTATTCTAGCTGTAGGA...............................................................................................................................................2316.00603200010000
..........................................................................................TCTTTGGTATTCTAGCTGTAGAAAC.............................................................................................................................................2516.00600510000000
..........................................................................................TCTTTGGTATTCTAGCTGTTT.................................................................................................................................................2116.00600010410000
..........................................................................................TCTTTGGTATTCTAGCTGTAGGAA..............................................................................................................................................2415.00501040000000
...........................................................................................CTTTGGTATTCTAGCTGTAGATA..............................................................................................................................................2315.00505000000000
...........................................................................................CTTTGGTATTCTAGCTGTAGATT..............................................................................................................................................2315.00505000000000
..............................................................................................................................................TAAAGCTTTTATACCAAAGCTCT...........................................................................................2315.00502300000000
..............................................................................................................................................TAAAGCTTTTATACCAAAG...............................................................................................1915.00502000000030
..........................................................................................TCTTTGGTATTCTAGCTGG...................................................................................................................................................1914.00440000000000
..............................................................................................................................................TAAAGCTTTTATACCAAAGCTA............................................................................................2214.00401300000000
...........................................................................................CTTTGGTATTCTAGCTGTAGT................................................................................................................................................2114.00403000100000
............................................................................................TTTGGTATTCTAGCTGTAGAA...............................................................................................................................................2114.00403100000000
..........................................................................................TCTTTGGTATTCTAGCTGTAGAGA..............................................................................................................................................2414.00401300000000
................................................................................................................TTGTTT-CG---CGCACATTGTAT........................................................................................................................2014.00411101000000
..........................................................................................TCTTTGGTATTCTAGCTGTAGATC..............................................................................................................................................2414.00400400000000
..............................................................................................................................................TAAAGCTTTTATACCAAAGCTCC...........................................................................................2314.00400400000000
............................................................................................TTTGGTATTCTAGCTGTAGATA..............................................................................................................................................2214.00400130000000
.............................................................................................TTGGTATTCTAGCTGTAGATT..............................................................................................................................................2113.00302100000000
............................................................................................TTTGGTATTCTAGCTGTAGAAA..............................................................................................................................................2213.00303000000000
..........................................................................................TCTTTGGTATTCTAGCTGTATT................................................................................................................................................2213.00301010100000
.............................................................................................................................................CTAAAGCTTTTATACCAAAGCC.............................................................................................2213.00300300000000
droEre2
AT-------------------------------------------TGCACC------------TTT--------TATCATTTTTGCTGTTTCTTTGGTATTCTAGCTGTAGATTGTTT-CG---CGCACATTGTATATCATCTAAAGCTTTTATACCAAAGCTCCAGCTTAAATTGCTTAACAACGCACCAA-----------------------CCA----------AA---AAACAGCCACAAATA------CASizeHit CountTotal NormTotalM055

Female-body		M057

Embryo		V060

Head		V040

Embryo		V107

Male-body		V108

Head		GSM1528801

follicle cells
..........................................................................................TCTTTGGTATTCTAGCTGTAG.................................................................................................................................................21156043.00560432603821117131167124831441912
..........................................................................................TCTTTGGTATTCTAGCTGTAGA................................................................................................................................................22148074.0048074360781030737103557313333130
...........................................................................................CTTTGGTATTCTAGCTGTAGA................................................................................................................................................2112997.0029972981113470
..........................................................................................TCTTTGGTATTCTAGCTGTAGAT...............................................................................................................................................2312659.002659116328161289471304
...........................................................................................CTTTGGTATTCTAGCTGTAG.................................................................................................................................................2012103.002103206104220160
..........................................................................................TCTTTGGTATTCTAGCTGTAGAAA..............................................................................................................................................2411207.00120710745338174921
..........................................................................................TCTTTGGTATTCTAGCTGTAGAA...............................................................................................................................................2311016.00101685651526241341
..........................................................................................TCTTTGGTATTCTAGCTGTA..................................................................................................................................................201675.006753988123157970
..........................................................................................TCTTTGGTATTCTAGCTGTAT.................................................................................................................................................211459.004592641525817670
..............................................................................................................................................TAAAGCTTTTATACCAAAGCT.............................................................................................211288.0028820553146190
..........................................................................................TCTTTGGTATTCTAGCTGTAGAAAA.............................................................................................................................................251246.00246238001016
............................................................................................TTTGGTATTCTAGCTGTAGA................................................................................................................................................201191.0019116132212110
............................................................................................TTTGGTATTCTAGCTGTAG.................................................................................................................................................191174.001748909439330
..........................................................................................TCTTTGGTATTCTAGCTGTAGATT..............................................................................................................................................241141.0014144561273127
..........................................................................................TCTTTGGTATTCTAGCTGTAGT................................................................................................................................................221139.0013969210432220
..........................................................................................TCTTTGGTATTCTAGCTGTAA.................................................................................................................................................211130.001309411715120
...........................................................................................CTTTGGTATTCTAGCTGTAGAT...............................................................................................................................................221126.001261050000021
..........................................................................................TCTTTGGTATTCTAGCTGT...................................................................................................................................................191124.001245724338200
..............................................................................................................................................TAAAGCTTTTATACCAAAGCTC............................................................................................221117.00117813211110
...........................................................................................CTTTGGTATTCTAGCTGTAGAAA..............................................................................................................................................23198.009898000000
..........................................................................................TCTTTGGTATTCTAGCTGTAGATA..............................................................................................................................................24193.009378208230
...........................................................................................CTTTGGTATTCTAGCTGTAGAA...............................................................................................................................................22184.008481000012
..........................................................................................TCTTTGGTATTCTAGCTGTAGATTG.............................................................................................................................................25145.0045903031812
..........................................................................................TCTTTGGTATTCTAGCTGTAGAC...............................................................................................................................................23135.0035134001116
............................................................................................TTTGGTATTCTAGCTGTAGATT..............................................................................................................................................22134.0034902012110
.............................................................................................TTGGTATTCTAGCTGTAGA................................................................................................................................................19132.003225101230
..........................................................................................TCTTTGGTATTCTAGCTGTAGG................................................................................................................................................22132.003222105130
..........................................................................................TCTTTGGTATTCTAGCTGTAC.................................................................................................................................................21130.003015300390
..........................................................................................TCTTTGGTATTCTAGCTGTAGAG...............................................................................................................................................23129.002925001030
..........................................................................................TCTTTGGTATTCTAGCTGTAGC................................................................................................................................................22125.002581210130
.........................................................................................TTCTTTGGTATTCTAGCTGTAGA................................................................................................................................................23125.002525000000
..........................................................................................TCTTTGGTATTCTAGCTGTAGATTGT............................................................................................................................................26123.002350001017
.............................................................................................TTGGTATTCTAGCTGTAG.................................................................................................................................................18122.002213011430
...........................................................................................CTTTGGTATTCTAGCTGTAGAAAA.............................................................................................................................................24122.002222000000
..........................................................................................TCTTTGGTATTCTAGCTGTAGATAA.............................................................................................................................................25121.002121000000
................................................................................................................TTGTTT-CG---CGCACATTGTATATCATC..................................................................................................................26121.00215902122
..........................................................................................TCTTTGGTATTCTAGCTGTAGATAAA............................................................................................................................................26121.002120100000
.........................................................................................TTCTTTGGTATTCTAGCTGTAG.................................................................................................................................................22121.002121000000
............................................................................................TTTGGTATTCTAGCTGTAGAT...............................................................................................................................................21120.002012300410
..........................................................................................TCTTTGGTATTCTAGCTG....................................................................................................................................................18117.001742001100
...........................................................................................CTTTGGTATTCTAGCTGTAGG................................................................................................................................................21115.001515000000
..............................................................................................................................................TAAAGCTTTTATACCAAAGCC.............................................................................................21115.001501500000
..............................................................................................................................................TAAAGCTTTTATACCAAAGC..............................................................................................20115.00157400040
...........................................................................................CTTTGGTATTCTAGCTGTA..................................................................................................................................................19114.001414000000
..........................................................................................TCTTTGGTATTCTAGCTAG...................................................................................................................................................19311.6735150009110
..........................................................................................TCTTTGGTATTCTAGCTGTAGATTGTT...........................................................................................................................................27111.00115000105
...........................................................................................CTTTGGTATTCTAGCTGTAA.................................................................................................................................................2019.0099000000
...............................................................................................................................................AAAGCTTTTATACCAAAGCT.............................................................................................2019.0099000000
...............................................................................................................................................AAAGCTTTTATACCAAAGCTC............................................................................................2118.0088000000
...........................................................................................CTTTGGTATTCTAGCTGTAGATA..............................................................................................................................................2318.0088000000
..........................................................................................TCTTTGGTATTCTAGCTGTAGATTT.............................................................................................................................................2517.0072010103
..........................................................................................TCTTTGGTATTCTAGCTTAG..................................................................................................................................................2096.7861420001180
..........................................................................................TCTTTGGTATTCTAGCTGTAGAAC..............................................................................................................................................2416.0065000010
..........................................................................................TCTTTGGTATTCTAGCTGTATT................................................................................................................................................2216.0064010100
..............................................................................................TGGTATTCTAGCTGTAGA................................................................................................................................................1816.0065000100
..............................................................................................................................................TAAAGCTTTTATACCAAAG...............................................................................................1915.0055000000
............................................................................................TTTGGTATTCTAGCTGTAGAAA..............................................................................................................................................2215.0054001000
...........................................................................................CTTTGGTATTCTAGCTGT...................................................................................................................................................1815.0055000000
..........................................................................................TCTTTGGTATTCTAGCTGTAGACA..............................................................................................................................................2415.0054000001
..........................................................................................TCTTTGGTATTCTAGCTGTT..................................................................................................................................................2015.0053000110
................................................................................................................TTGTTT-CG---CGCACATTGTATATC.....................................................................................................................2315.0050011120
............................................................................................................................................TCTAAAGCTTTTATACCAAAGCT.............................................................................................2315.0052300000
...........................................................................................CTTTGGTATTCTAGCTGTAT.................................................................................................................................................2014.0044000000
..........................................................................................TCTTTGGTATTCTAGCTGTAGAAG..............................................................................................................................................2414.0042001100
............................................................................................TTTGGTATTCTAGCTGTAGATA..............................................................................................................................................2213.0032100000
............................................................................................TTTGGTATTCTAGCTGTA..................................................................................................................................................1813.0032001000
...........................................................................................CTTTGGTATTCTAGCTGTAGATT..............................................................................................................................................2313.0032000100
..........................................................................................TCTTTGGTATTCTAGCTGTATG................................................................................................................................................2223.0060003030
.................................................................................................................TGTTT-CG---CGCACATTGTATATCATC..................................................................................................................2513.0032100000

Generated: 10/20/2015 at 10:13 PM