dgr-mir-6-6

ATTTTATTTTATGTGTGATTTTTTTTTAACTCCACTCATAAATTGTTTAAAAGGAAGAGAACGCTCGCTGCTGATGTAGTTCATGATTCAAATATTTTATATCACAGTGGCTGTTCTTTTTTGTTTATCAATGATTCAACTTTGTGCAACTCATATTTTTGAAATGATGTGTAT *********************************......((((..((((.((((((((((((.(((((.((((((((.................))))))))))))))).)))))))))).)))).)))).......*********************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V109 male body	M041 female body
...................................................................................................TATCACAGTGGCTGTTCTTTTT.....................................................	22	0	6	2.50	15	5	10
...................................................................................................TATCACAGTGGCTGTTCTTTT......................................................	21	0	6	1.83	11	9	2
...................................................................................................TATCACAGTGGCTGTTCTTT.......................................................	20	0	6	0.33	2	2	0
...................................................................................................TATCACAGTGGCTGGTCTTTT......................................................	21	1	6	0.17	1	1	0
...................................................................................................TATCACTGTGGCTGTTCTTTTT.....................................................	22	1	6	0.17	1	1	0
.......................................AAATTGTTGAAAGGGAAG.....................................................................................................................	18	2	20	0.10	2	1	1

TAAAATAAAATACACACTAAAAAAAAATTGAGGTGAGTATTTAACAAATTTTCCTTCTCTTGCGAGCGACGACTACATCAAGTACTAAGTTTATAAAATATAGTGTCACCGACAAGAAAAAACAAATAGTTACTAAGTTGAAACACGTTGAGTATAAAAACTTTACTACACATA *********************************......((((..((((.((((((((((((.(((((.((((((((.................))))))))))))))).)))))))))).)))).)))).......*********************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M041 female body	V109 male body
.................................CGAGTATTTAGCAATTTTTC.........................................................................................................................	20	3	20	0.40	8	4	4
..................................GAGTATTTAGCAATTTTTC.........................................................................................................................	19	2	8	0.13	1	1	0

Species	Coordinate	ID	Type	Alignment
droGri2	scaffold_5621:3651-3824 +	dgr-mir-6-6	Known_mirbase	--------------------ATT---TTATTTTATG--TGTGATTTTTT---TTT--AAC----T-------CCACTCATAAATTGTTTAAAAGGAAGAGAACGCTCGCTGCTGATGTAGTTC-ATGATTCAAATATTT------TATATCACAGTGGCTGTTCTTTTTTGTTTATCAATGATTCAACTTTGTGCAAC-TCATATTTTTGAAATGATGTGTAT
droVir3	scaffold_12875:4112909-4113050 +	dvi-mir-6-3	Known_mirbase	TAAC--TA-AC------TTG-TG-----------------CAATTTGTTCACTTT--AAT----G-------ACGCTCGTCAATTGTTTAAAAGGAAGAGAACGTTCGCTGTTGATGTAGT-C-GACCTTTGTACTCTT------TATATCACAGTGGCTGTTCTTTTTTGTTTAGCAATTTCTCAAC-TT--------------------------------
droMoj3	scaffold_6496:20935941-20936091 -	dmo-mir-6-3	Known_mirbase	--------------------GTG---TTATCTTAAGTATGTGATTTGTTCAGTTTCAAAT----C-------GTGGCCGTAAATTGCTTAAAGAGAAGAGAACGTTCGCTGTTGATGTAGTCG-AATTCATTTAATCTT------TATATCACAGTGGCTGTTCTTTTTTGTTTAACAATTTTTCAACGTTG-------------------------------
droWil2	scf2_1100000004514:1650968-1651107 -	dwi-mir-6-3	Known_mirbase	GTT------TTACCGTTTTC-TT---TCATTTT--------------------------------------------------TTGTTTAAAAAGAAGGGAACGGTTGCTGTTGATGTAGTAT-ACCATTTTG----TTTAACAATATATCACAGTGGCTGTTCTTTTTTGTTTAACAATCAATCAACAATATAAAATTTCATA------------T------
dp5	3:12676793-12676920 -	dps-mir-6-3	Known_mirbase	TCTCCGCCGCCGCGCATTCG--------------------------------------------C-------CAAATTGAAAATTGTTCAAAAAGAAGGGAACGGTTGCTGCTGATGTAGTTC-AAGTTTTGCACAATT------TATATCACAGTGGCTGTTCTTTTTTGTTTGCCAATCGATCA-------------------------------------
droPer2	scaffold_2:8906752-8906881 +	dpe-mir-6-2	Known_mirbase	TCTCCGCCGCCGCGCATT---------CAC------------------------------------------CAAATTGAAAATTGTTCAAAAAGAAGGGAACGGTTGCTGCTGATGTAGTTC-AAGTTTCGCACAATT------TATATCACAGTGGCTGTTCTTTTTTGTTTGCCAATCGATCAAC-----------------------------------
droAna3	scaffold_13266:9732080-9732213 +	dan-mir-6-3	Known_mirbase	-----------ACGCATTTG-TG---TCACGTTG-G-----------------------TGGACA-------GAAATTGAAAATTGTTCAAAAAGAAGGGAACGGTCGCTGCTGATGTAGTT-----ATTCGCATCATT------TATATCACAGTGGCTGTTCTTTTTTGTTTGCCAATCGATCTACGTT--------------------------------
droBip1	scf7180000396427:875017-875177 +			TCTG--TG-GCACGAATTTG-TGGCATCACCTTG-G-----------------------TGGA-C-------AAAATTGAAAATTGTTCAAAAAGAAGGGAACGGTTGCTGCTGATGTAGTT-----ATTCGCCTCATT------TATATCACAGTGGCTGTTCTTTTTTGTTTGGCAATCGATCTACGTTCTGGATT---------CTGAAAGGAT------
droKik1	scf7180000302679:88650-88786 -			---G--CC-TCAG-----T-GTA---TCATCTCT-G-----------------------TTG--G-------AAAATTGAAAATTGTTCAAAAAGAAGGGAACGGTTGCTGCTGATGTAGTTCTTAAATTCACACAATT------TATATCACAGTGGCTGTTCTTTTTTGTTTGGCAATCGATCTACGTT--------------------------------
droFic1	scf7180000454039:847356-847471 -			---------------------TG---TCTCCTCA-A-----------------------TGT--G-------AAAATTGAAAATTGTTCAAAAAGAAGGGAACGGTTGCTGATGATGTAGTTT-GAAATTCTCACCATT------TATATCACAGTGGCTGTTCTTTTTTGTTTGGCAAT-------------------------------------------
droEle1	scf7180000491201:2013283-2013411 -			------------------T-GTG---TCACCTCA-A-----------------------TTT--G-------AAAATTGAAAATTGTTCAAAAAGAAGGGAACGGTTGCCGATGATGTAGTTT-GAAATTCTCACCATT------TATATCACAGTGGCTGTTCTTTTTTGTTTGGCAATCGATCTACGTT--------------------------------
droRho1	scf7180000780066:74335-74466 +			---------------ATTT-GTG---TCACCTCA-A-----------------------TTT--G-------AAAATTGAAAATTGTTCAAAAAGAAGGGAACCGTTGCTGATGATGTAGTTT-GAAATTCTCACCATT------TATATCACAGTGGCTGTTCTTTTTTATTTGGCAATCGATCTACGTT--------------------------------
droBia1	scf7180000302143:3059124-3059264 -			---G--TG-GCACGCATTTG-TG---TCACCTCA-G-----------------------TGC--G-------AAAATTGAAAATTGTCCAAAAAGAAGGGAACGGTTGCTGGTGATGTAGTTC-GAAACTCTCACAGTT------TATATCACAGTGGCTGTTCTTTTTTGTTTGCCAATCGATCTACGTT--------------------------------
droTak1	scf7180000415384:84706-84853 +			---G--TG-GCATGCATTTG-TG---TCAACTGA-A-----------------------TGT--GAAAACTGAAAATTGAAAATTGTTCAAAAAGAAGGGAACGGTTGCTGATGATGTAGTAC-GAAACTCTCACAATT------TATATCACAGTGGCTGTTCTTTTTTGTTTGGCAATCGATCTACGTT--------------------------------
droEug1	scf7180000409474:2397504-2397644 +			---G--TG-GCATGCATTTG-TG---TCACCTCA-A-----------------------TGT--G-------AAAATTGAAAATTGTTCAAAAAGAAGGGAACCGTTGCTGATGGTGTAGTTC-AAAATTCTCACAATT------TATATCACAGTGGCTGTTCTTTTTTGTTTGGCAATCGATCTACGTT--------------------------------
dm3	chr2R:15548205-15548332 -	dme-mir-6-3	Known_mirbase	--------------------GTG---TCACCTCA-G-----------------------TGC--G-------AAAATTGAAAATTGTACAAAAAGAAGGGAACGGTTGCTGATGATGTAGTTT-GAAACTCTCACAATT------TATATCACAGTGGCTGTTCTTTTTTGTTTGGCAATCGATCTACGTT--------------------------------
droSim2	2r:16195477-16195604 -	dsi-mir-6-3	Known_mirbase	--------------------GTG---TCACCTCA-G-----------------------TGC--G-------AAAATTGAAAATTGTACAAAAAGAAGGGAACGGTTGCTGATGATGTAGTTC-GAAACTCTCACAATT------TATATCACAGTGGCTGTTCTTTTTTGTTTGGCAATCGATCTACGTT--------------------------------
droSec2	scaffold_1:13062938-13063065 -	dse-mir-6-3	Known_mirbase	--------------------GTG---TCACCTCA-G-----------------------TGC--G-------AAAATTGAAAATTGTACAAAAAGAAGGGAACGGTTGCTGATGATGTAGTTC-GAAACTCTCACAATT------TATATCACAGTGGCTGTTCTTTTTTGTTTGGCAATCGATCTACGTT--------------------------------
droYak3	2R:13624441-13624584 +	dya-mir-6-3	Known_mirbase	TTTG--TG-GCCCGCATTTT-TG---TCACCTCA-G-----------------------TGC--G-------AAAATTGAAAATTGTTCAAAAAGAAGGGAACGGTTGCTGATGATGTAGTTC-GAAACTCTCTCAATT------TATATCACAGTGGCTGTTCTTTTTTATTTGGCAATCGATCTACATT--------------------------------
droEre2	scaffold_4845:9748470-9748586 -	der-mir-6-3	Known_mirbase	--------------------GTG---TCACCTTG-G-----------------------TGC--G-------AAAATTGAAAATTGTTCAAAAAGAAGGGAACGGTGGCTGATGATGTAGTTC-GAAACTCTCACAATT------TATATCACAGTGGCTGTTCTTTTTTGTTTGCCAAT-------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droGri2

--------------------ATT---TTATTTTATG--TGTGATTTTTT---TTT--AAC----T-------CCACTCATAAATTGTTTAAAAGGAAGAGAACGCTCGCTGCTGATGTAGTTC-ATGATTCAAATATTT------TATATCACAGTGGCTGTTCTTTTTTGTTTATCAATGATTCAACTTTGTGCAAC-TCATATTTTTGAAATGATGTGTAT	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
...................................................................................................................................................TATCACAGTGGCTGTTCTTTTT......................................................	22	6	2.50	15	10	5
...................................................................................................................................................TATCACAGTGGCTGTTCTTTT.......................................................	21	6	1.83	11	2	9
...................................................................................................................................................TATCACAGTGGCTGTTCTTT........................................................	20	6	0.33	2	0	2

droVir3

TAAC--TA-AC------TTG-TG-----------------CAATTTGTTCACTTT--AAT----G-------ACGCTCGTCAATTGTTTAAAAGGAAGAGAACGTTCGCTGTTGATGTAGT-C-GACCTTTGTACTCTT------TATATCACAGTGGCTGTTCTTTTTTGTTTAGCAATTTCTCAAC-TT--------------------------------	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells	SRR2096013 Ovary_Strain_9_oxidized	SRR2096014 Ovary_Strain_160_oxidized	SRR2096026 embryo_0-2h from 14 day old Strain 9 mothers	SRR2096038 embryo_0-2h from 14 day old Strain 9 mothers	SRR2096050 embryo_0-2h from 14 day old Strain 160 mothers	SRR2096055 Ovary_Min_43	SRR2096056 Ovary_Min_46	SRR2096057 Ovary_Min_50	SRR2096058 Ovary_Min_98	SRR2096059 Ovary_Min_164	SRR2096060 Ovary_Min_193	SRR2096061 embryo_0-2h from 14 day old Strain 160 mothers	SRR2096072 embryo_0-2h from 15to16 day old dysgenic mothers	SRR2096079 embryo_0-2h from 15to16 day old dysgenic mothers	SRR2096080 embryo_0-2h from 15to16 day old nondysgenic mothers	SRR2096081 embryo_0-2h from 15to16 day old nondysgenic mothers
...................................................................................................................................................TATCACAGTGGCTGTTCTTTTT......................................................	22	3	34949.67	104849	0	0	30	29917	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	14	33	193	3128	2523	3385	2842	2463	4757	2479	4868	3020	2055	2357	2021	14	9	0	6143	2	0	6	23	0	1	1566	1399	10448	8	4	4	1	5	0	6093	4242	4274	2250	2272
................................................................................................AGAGAACGTTCGCTGTTGATGTA........................................................................................................	23	1	14177.00	14177	0	0	1	161	0	0	0	0	0	0	0	0	12	125	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	85	1	30	60	207	314	0	0	6	9	1019	3437	2554	48	54	19	36	8	23	8	2	12	4	8	3	1	5	147	0	0	0	0	0	270	270	2429	0	2	2	0	3	0	1677	245	259	282	338
...................................................................................................................................................TATCACAGTGGCTGTTCTTTT.......................................................	21	3	5932.67	17798	0	0	7	5463	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	14	18	145	124	356	305	338	606	509	1047	845	599	807	645	3	3	0	1979	1	0	4	0	0	8	216	197	622	0	1	0	0	2	0	370	688	662	600	610
...................................................................................................................................................TATCACAGTGGCTGTTCTTTTTT.....................................................	23	1	4063.00	4063	0	0	0	1499	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	6	81	61	105	91	85	167	91	160	102	70	104	63	0	0	0	250	2	0	0	0	0	0	42	41	318	0	0	0	0	2	0	215	159	186	81	80
...................................................................................................................................................TATCACAGTGGCTGTTCTTTTTC.....................................................	23	3	3316.00	9948	0	0	1	3200	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	2	7	115	95	335	276	182	402	420	777	641	401	506	444	1	1	0	1877	0	0	2	0	1	0	24	35	34	0	0	0	1	0	1	21	46	56	22	21
................................................................................................AGAGAACGTTCGCTGTTGATG..........................................................................................................	21	1	1078.00	1078	0	0	0	28	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	1	0	6	1	0	0	0	0	7	94	55	59	49	45	101	47	79	52	34	33	28	0	0	0	143	36	0	1	0	0	0	6	11	55	1	0	0	0	0	0	27	22	22	16	15
...................................................................................................................................................TATCACAGTGGCTGTTCTTTTTCC....................................................	24	3	570.00	1710	0	0	0	451	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	18	20	49	55	19	49	76	180	126	75	90	60	0	0	0	392	0	0	0	0	0	0	6	2	5	0	1	0	0	0	0	7	15	4	5	3
...................................................................................................................................................TATCACAGTGGCTGTTCTTT........................................................	20	3	518.00	1554	0	0	6	361	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	3	5	11	10	15	16	18	36	31	66	66	38	44	39	0	0	0	199	0	0	0	0	0	0	27	33	43	0	0	0	0	0	0	36	92	84	137	137
...................................................................................................................................................TATCACAGTGGCTGTTCTTTTC......................................................	22	3	494.67	1484	0	0	0	1096	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	1	10	13	1	19	18	23	36	16	28	18	0	0	0	151	0	0	1	0	0	0	4	6	9	0	0	0	1	0	1	5	8	9	0	6
................................................................................................AGAGAACGTTCGCTGTTGATGT.........................................................................................................	22	1	402.00	402	0	0	0	24	0	0	0	0	0	0	0	0	2	12	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	5	3	18	18	0	0	0	0	11	32	19	3	1	1	11	1	2	1	2	0	1	0	0	0	7	40	0	0	0	0	0	9	8	57	0	0	0	0	0	0	51	19	14	11	17
................................................................................................AGAGAACGTTCGCTGTTGATGTAA.......................................................................................................	24	1	238.00	238	0	0	0	5	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	3	4	0	0	0	0	8	16	12	3	3	3	1	3	2	5	0	2	0	0	0	0	0	0	0	0	0	0	0	7	5	52	0	0	0	0	0	0	49	4	18	14	16
...............................................................................................AAGAGAACGTTCGCTGTTGATGTA........................................................................................................	24	1	197.00	197	0	0	0	2	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	4	2	0	0	0	0	17	49	43	3	1	0	2	1	1	0	0	0	1	0	0	0	2	1	0	0	0	0	0	3	5	28	0	0	0	0	0	0	20	1	2	6	0
...................................................................................................................................................TATCACAGTGGCTGTTCTTTTTA.....................................................	23	3	179.33	538	0	0	1	64	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	7	10	22	15	17	25	10	13	13	4	7	6	0	0	0	22	0	0	0	0	0	0	14	19	112	0	0	0	0	0	0	54	35	25	18	24
...................................................................................................................................................TATCACAGTGGCTGTTCTTTTTTC....................................................	24	1	130.00	130	0	0	0	41	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	1	3	4	2	5	6	11	10	4	6	2	0	0	0	24	0	0	0	0	0	0	1	2	2	0	0	0	0	0	0	0	1	1	2	0
...................................................................................................................................................TATCACAGTGGCTGTTCTTTTTCCC...................................................	25	3	126.67	380	0	0	0	27	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	8	5	12	12	4	4	29	49	53	27	31	19	0	0	0	92	0	0	0	0	0	0	0	0	5	0	0	1	0	0	1	1	0	0	0	0
...................................................................................................................................................TATCACAGTGGCTGTTCTTTTTTT....................................................	24	2	68.50	137	0	0	0	37	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	4	3	2	5	7	4	9	4	6	4	1	0	0	0	3	0	0	0	0	0	0	2	2	16	0	0	0	0	0	0	6	5	6	2	5
................................................................................................AGAGAACGTTCGCTGTTGATGTAAA-.....................................................................................................	25	1	66.00	66	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	12	5	3	2	0	2	1	1	1	0	0	0	0	0	0	0	1	0	0	0	0	0	1	2	9	0	0	0	0	0	0	6	2	5	2	8
................................................................................................AGAGAACGTTCGCTGTTGAT...........................................................................................................	20	1	64.00	64	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	3	0	0	0	5	1	5	2	3	4	1	0	0	0	13	1	0	0	0	0	0	2	0	7	0	0	0	0	0	0	2	4	2	5	2
................................................................................................AGAGAACGTTCGCTGTTGATGTC........................................................................................................	23	1	58.00	58	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	3	18	27	2	1	0	0	1	1	0	1	0	0	0	0	0	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................TATCACAGTGGCTGTTCTT.........................................................	19	3	50.33	151	0	0	1	18	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	2	2	1	3	5	6	4	10	9	9	4	0	1	0	17	0	0	1	0	0	0	1	2	6	0	0	0	0	0	0	6	8	2	21	10
.......................................................................................................................GT-C-GACCTTTGTACTCTT------TA............................................................................	20	1	45.00	45	0	0	0	4	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6	0	1	4	3	16	0	0	0	0	1	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	5	0	0	0	0	0	0	0	0	0	0	1
...............................................................................................AAGAGAACGTTCGCTGTTGATG..........................................................................................................	22	1	42.00	42	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	7	5	0	1	5	4	1	3	1	3	2	0	0	0	0	3	0	0	0	0	0	0	0	2	1	0	0	0	0	0	0	0	1	0	0	0
................................................................................................AGAGAACGTTCGCTGTTGA............................................................................................................	19	2	40.50	81	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	21	19	5	3	4	2	0	6	0	1	1	1	0	0	0	4	0	0	0	0	0	0	0	1	5	0	0	0	0	0	0	4	1	0	0	0
...................................................................................................................................................TATCACAGTGGCTGTTCTTTC.......................................................	21	3	35.33	106	0	0	0	98	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	5	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................TATCACAGTGGCTGTTCTTTTTTCC...................................................	25	1	32.00	32	0	0	0	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	4	1	0	2	1	0	2	1	2	0	0	0	9	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................TATCACAGTGGCTGTTCTTTTTAA....................................................	24	3	29.33	88	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	3	2	4	4	1	2	3	1	0	2	0	0	0	0	0	0	0	0	0	0	5	2	19	0	0	0	0	0	1	14	13	3	3	4
...................................................................................................................................................TATCACAGTGGCTGTTCTTTTCC.....................................................	23	3	28.33	85	0	0	1	44	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	1	2	0	3	6	2	3	3	0	0	0	13	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	1	1	0	0
...............................................................................................AAGAGAACGTTCGCTGTTGATGT.........................................................................................................	23	1	27.00	27	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	2	0	0	0	0	0	3	2	0	0	0	1	0	1	0	1	0	0	0	0	0	2	2	0	0	0	0	0	1	1	5	0	0	0	0	0	0	0	0	1	1	1
...................................................................................................................................................TATCACAGTGGCTGTTCTTTTA......................................................	22	3	26.00	78	0	0	0	14	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	3	1	2	0	5	1	0	1	2	0	0	0	0	0	0	0	0	0	0	4	2	13	0	0	0	0	0	0	6	7	9	2	4
...................................................................................................................................................TATCACAGTGGCTGTTCT..........................................................	18	3	21.00	63	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	4	2	1	1	2	2	0	0	0	2	0	0	0	0	0	0	1	0	13	0	0	0	0	0	0	10	2	2	6	8
...................................................................................................................................................TATCACAGTGGCTGTTCTTC........................................................	20	3	17.00	51	0	0	0	50	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................TATCACAGTGGCTGTTCTTTTG......................................................	22	3	16.33	49	0	0	0	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	2	0	2	2	0	1	0	0	2	1	0	0	0	6	0	0	0	0	0	0	0	1	3	0	0	0	0	0	0	2	10	0	5	2
................................................................................................AGAGAACGTTCGCTGTTGATGTAAA-A-...................................................................................................	26	1	14.00	14	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	2	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	2	3	1	1	0
....................................................................................................................................................ATCACAGTGGCTGTTCTTTTT......................................................	21	3	11.33	34	0	0	3	21	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	1	0	1	0	1	0	0	0	0	0	2	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	2	0	0	0	0
................................................................................................AGAGAACGTTCGCTGTTGATGC.........................................................................................................	22	1	11.00	11	0	0	0	7	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................TATCACAGTGGCTGTTCTTTTTTA....................................................	24	1	9.00	9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	2	1	1	0	0	0	0	0	0	0	0	0	0	0	0	1	1	1	0	0	0	0	0	0	0	0	0	0	0
................................................................................................AGAGAACGTTCGCTGTTGATGTAG.......................................................................................................	24	1	9.00	9	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	2	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	1	0	0	0	0	0	0	0	0	1	0
...............................................................................................AAGAGAACGTTCGCTGTTGAT...........................................................................................................	21	1	9.00	9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	1	0	0	0	0	2	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1
...................................................................................................................................................TATCACAGTGGCTGTTCTTTTTCA....................................................	24	3	9.00	27	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	2	1	1	1	2	0	3	2	0	2	0	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	1	0
................................................................................................AGAGAACGTTCGCTGTTGATGTT........................................................................................................	23	1	8.00	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	2	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................ATCACAGTGGCTGTTCTTTTTT.....................................................	22	1	8.00	8	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................ATATCACAGTGGCTGTTCTTTTT......................................................	23	3	7.67	23	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	3	1	2	1	3	1	2	1	0	0	3	0	1	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0
.......................................................................................................................................................ACAGTGGCTGTTCTTTTT......................................................	18	3	7.00	21	0	0	0	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	1	0	0	0	0	0	1	0	0	0	0	0	1	1	4	0	0	0	0	0	0	3	1	0	1	0
................................................................................................AGAGAACGTTCGCTGTTGATGTG........................................................................................................	23	1	7.00	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	3	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................TATCACAGTGGCTGTTCTTTTCCC....................................................	24	3	6.00	18	0	0	0	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	1	1	1	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0
...................................................................................................................................................TATCACAGTGGCTGTTCTTTTTTG....................................................	24	1	6.00	6	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
...................................................................................................................................................TATCACAGTGGCTGTTC...........................................................	17	3	5.67	17	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	2	4	0	0	0	0	0	0	3	0	2	2	2
...................................................................................................................................................TATCACAGTGGCTGTTCTTTTAA.....................................................	23	3	5.33	16	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	3	1	1	0	0	0	0	0	1	0	2	0	2	1
.................................................................................................................................................TATATCACAGTGGCTGTTCTTT........................................................	22	2	5.00	10	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	1	1	2	0	0
................................................................................................AGAGAACGTTCGCTGTTGATGTAT.......................................................................................................	24	1	5.00	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
...............................................................................................AAGAGAACGTTCGCTGTTGATGTAA.......................................................................................................	25	1	5.00	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	1	0	0	1
.....................................................................................................................................................TCACAGTGGCTGTTCTTTTT......................................................	20	3	5.00	15	0	0	0	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	1	1	1	0	2
...................................................................................................................................................TATCACAGTGGCTGTTCTTTTTTCCC..................................................	26	2	4.50	9	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	2	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................AGAGAACGTTCGCTGTTGATC..........................................................................................................	21	2	4.50	9	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	1	0	1	0	0	1	0	0	0	0	0	2	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................GAAGAGAACGTTCGCTGTTGATG..........................................................................................................	23	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
...................................................................................................GAACGTTCGCTGTTGATGTA........................................................................................................	20	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
.....................................................................................................ACGTTCGCTGTTGATGTA........................................................................................................	18	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
................................................................................................AGAGAACGTTCGCTGTTGATGA.........................................................................................................	22	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................AGAACGTTCGCTGTTGATGTA........................................................................................................	21	1	4.00	4	0	0	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................TATCACAGTGGCTGTTCTTTTAAA....................................................	24	3	4.00	12	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	3	0	0	0	0	0	0	1	1	0	1	2	1
...................................................................................................................................................TATCACAGTGGCTGTTCTTTTTAC....................................................	24	3	3.67	11	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	1	1	0	0	0	1	2	0	0	1	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................ATCACAGTGGCTGTTCTTTT.......................................................	20	3	3.00	9	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1
...........................................................................CTCGTCAATTGTTTAAAAGGA...............................................................................................................................	21	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	1	0	0	0

droMoj3

--------------------GTG---TTATCTTAAGTATGTGATTTGTTCAGTTTCAAAT----C-------GTGGCCGTAAATTGCTTAAAGAGAAGAGAACGTTCGCTGTTGATGTAGTCG-AATTCATTTAATCTT------TATATCACAGTGGCTGTTCTTTTTTGTTTAACAATTTTTCAACGTTG-------------------------------	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
...................................................................................................................................................TATCACAGTGGCTGTTCTTTTT......................................................	22	3	175659.67	526979	30	1	0	0	526946	2
...................................................................................................................................................TATCACAGTGGCTGTTCTTTT.......................................................	21	3	71420.67	214262	14	1	0	0	214242	5
...................................................................................................................................................TATCACAGTGGCTGTTCTTTTTT.....................................................	23	1	20128.00	20128	0	0	0	0	20127	1
...................................................................................................................................................TATCACAGTGGCTGTTCTTTTTC.....................................................	23	3	9565.33	28696	6	0	0	0	28690	0
...................................................................................................................................................TATCACAGTGGCTGTTCTTT........................................................	20	3	5461.67	16385	3	0	0	0	16380	2
...................................................................................................................................................TATCACAGTGGCTGTTCTTTTC......................................................	22	3	4979.00	14937	1	0	0	0	14936	0
...................................................................................................................................................TATCACAGTGGCTGTTCTTTC.......................................................	21	3	1153.67	3461	0	0	0	0	3461	0
...................................................................................................................................................TATCACAGTGGCTGTTCTTTTTCC....................................................	24	3	749.33	2248	0	0	0	0	2248	0
...................................................................................................................................................TATCACAGTGGCTGTTCTTC........................................................	20	3	612.00	1836	0	0	0	0	1836	0
................................................................................................AGAGAACGTTCGCTGTTGATGT.........................................................................................................	22	1	586.00	586	0	204	0	0	382	0
................................................................................................AGAGAACGTTCGCTGTTGATGTA........................................................................................................	23	1	565.00	565	1	146	0	0	418	0
....................................................................................................................................................ATCACAGTGGCTGTTCTTTTTT.....................................................	22	1	463.00	463	0	0	0	0	463	0
...................................................................................................................................................TATCACAGTGGCTGTTCTTTTTTC....................................................	24	1	402.00	402	0	0	0	0	402	0
....................................................................................................................................................ATCACAGTGGCTGTTCTTTTT......................................................	21	3	393.67	1181	2	0	0	0	1179	0
...................................................................................................................................................TATCACAGTGGCTGTTCTT.........................................................	19	3	276.67	830	0	1	0	0	828	1
...................................................................................................................................................TATCACAGTGGCTGTTCTTTTTA.....................................................	23	3	230.33	691	0	0	0	0	691	0
...................................................................................................................................................TATCACAGTGGCTGTTCTTTTTTT....................................................	24	2	181.50	363	2	0	0	0	361	0
................................................................................................AGAGAACGTTCGCTGTTGATG..........................................................................................................	21	1	171.00	171	0	64	0	0	107	0
....................................................................................................................................................ATCACAGTGGCTGTTCTTTT.......................................................	20	3	132.33	397	1	0	0	0	396	0
................................................................................................AGAGAACGTTCGCTGTTGATGC.........................................................................................................	22	1	129.00	129	0	0	0	0	129	0
...............................................................................................AAGAGAACGTTCGCTGTTGATGT.........................................................................................................	23	1	116.00	116	0	45	0	0	71	0
...................................................................................................................................................TATCACAGTGGCTGTTCTTTTA......................................................	22	3	89.67	269	0	0	0	0	269	0
.....................................................................................................................................................TCACAGTGGCTGTTCTTTTT......................................................	20	3	89.67	269	0	0	0	0	269	0
...................................................................................................................................................TATCACAGTGGCTGTTCTTTTTTCC...................................................	25	1	70.00	70	0	0	0	0	70	0
...................................................................................................................................................TATCACAGTGGCTGTTCTTTTCC.....................................................	23	3	68.67	206	0	0	0	0	206	0
......................................................................................................................................................CACAGTGGCTGTTCTTTTT......................................................	19	3	65.33	196	0	0	0	0	196	0
...................................................................................................................................................TATCACAGTGGCTGTTCTTTTTCCC...................................................	25	3	53.67	161	0	0	0	0	161	0
.......................................................................................................................................................ACAGTGGCTGTTCTTTTT......................................................	18	3	47.67	143	0	0	0	0	143	0
...............................................................................................AAGAGAACGTTCGCTGTTGATG..........................................................................................................	22	1	47.00	47	0	19	0	0	28	0
...................................................................................................................................................TATCACAGTGGCTGTTCTTTG.......................................................	21	3	46.67	140	0	0	0	0	140	0
.....................................................................................................................................................TCACAGTGGCTGTTCTTTT.......................................................	19	3	31.33	94	0	0	0	0	94	0
..................................................................................................................................................ATATCACAGTGGCTGTTCTTT........................................................	21	3	31.33	94	0	0	0	0	94	0
...................................................................................................................................................TATCACAGTGGCTGTTCTTTTG......................................................	22	3	28.67	86	0	0	0	0	86	0
......................................................................................................................................................CACAGTGGCTGTTCTTTT.......................................................	18	3	28.33	85	0	0	0	0	85	0
...................................................................................................................................................TATCACAGTGGCTGTTCT..........................................................	18	3	26.33	79	0	0	0	0	79	0
................................................................................................AGAGAACGTTCGCTGTTGATGTAA.......................................................................................................	24	1	24.00	24	0	6	0	0	18	0
...............................................................................................AAGAGAACGTTCGCTGTTGATGC.........................................................................................................	23	1	22.00	22	0	0	0	0	22	0
....................................................................................................................................................ATCACAGTGGCTGTTCTTTTTC.....................................................	22	3	16.00	48	0	0	0	0	48	0
................................................................................................AGAGAACGTTCGCTGTTGATGTT........................................................................................................	23	1	15.00	15	0	8	0	0	7	0
...................................................................................................................................................TATCACAGTGGCTGTTCTC.........................................................	19	3	14.67	44	0	0	0	0	44	0
.....................................................................................................................................................TCACAGTGGCTGTTCTTTTTTG....................................................	22	1	13.00	13	0	0	0	0	13	0
......................................................................................................................................................CACAGTGGCTGTTCTTTTTT.....................................................	20	1	12.00	12	0	0	0	0	12	0
.....................................................................................................................................................TCACAGTGGCTGTTCTTTTTTGT...................................................	23	1	11.00	11	0	0	0	0	11	0
....................................................................................................................................................ATCACAGTGGCTGTTCTTT........................................................	19	3	11.00	33	0	0	0	0	33	0

droWil2

GTT------TTACCGTTTTC-TT---TCATTTT--------------------------------------------------TTGTTTAAAAAGAAGGGAACGGTTGCTGTTGATGTAGTAT-ACCATTTTG----TTTAACAATATATCACAGTGGCTGTTCTTTTTTGTTTAACAATCAATCAACAATATAAAATTTCATA------------T------	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
...................................................................................................................................................TATCACAGTGGCTGTTCTTTTT......................................................	22	3	35155.67	105467	0	1807	0	103655	5
...................................................................................................................................................TATCACAGTGGCTGTTCTTTT.......................................................	21	3	8217.00	24651	0	344	1	24304	2
...................................................................................................................................................TATCACAGTGGCTGTTCTTTTTT.....................................................	23	1	1572.00	1572	0	26	0	1545	1
...................................................................................................................................................TATCACAGTGGCTGTTCTTT........................................................	20	3	1168.67	3506	0	59	5	3441	1
...................................................................................................................................................TATCACAGTGGCTGTTCTTTTTA.....................................................	23	3	1099.33	3298	0	10	0	3288	0
................................................................................................AGGGAACGGTTGCTGTTGATGTA........................................................................................................	23	1	841.00	841	0	0	0	841	0
...................................................................................................................................................TATCACAGTGGCTGTTCTT.........................................................	19	3	320.00	960	0	6	0	950	4
...................................................................................................................................................TATCACAGTGGCTGTTCTTTTTAA....................................................	24	3	217.00	651	0	5	0	646	0
...................................................................................................................................................TATCACAGTGGCTGTTCTTTTA......................................................	22	3	189.67	569	0	4	0	565	0
...................................................................................................................................................TATCACAGTGGCTGTTCT..........................................................	18	3	128.33	385	0	3	0	382	0
................................................................................................AGGGAACGGTTGCTGTTGATGT.........................................................................................................	22	1	85.00	85	0	0	0	85	0
....................................................................................................................................................ATCACAGTGGCTGTTCTTTTT......................................................	21	3	70.33	211	0	143	0	68	0
................................................................................................AGGGAACGGTTGCTGTTGATG..........................................................................................................	21	1	54.00	54	0	0	0	54	0
...................................................................................................................................................TATCACAGTGGCTGTTCTTTTTAAA...................................................	25	3	46.00	138	0	0	0	138	0
.......................................................................................................................................................ACAGTGGCTGTTCTTTTT......................................................	18	3	45.00	135	0	1	0	134	0
...................................................................................................................................................TATCACAGTGGCTGTTCTTTTAA.....................................................	23	3	41.67	125	0	0	0	125	0
...................................................................................................................................................TATCACAGTGGCTGTTCTTTTC......................................................	22	3	40.33	121	0	1	0	120	0
...................................................................................................................................................TATCACAGTGGCTGTTCTTTTTC.....................................................	23	3	32.33	97	0	0	0	97	0
................................................................................................AGGGAACGGTTGCTGTTGATGTAA.......................................................................................................	24	1	31.00	31	0	0	0	31	0
...................................................................................................................................................TATCACAGTGGCTGTTCTTTTTTA....................................................	24	1	30.00	30	0	0	0	30	0
...................................................................................................................................................TATCACAGTGGCTGTTCTTTTG......................................................	22	3	18.67	56	0	0	0	56	0
....................................................................................................................................................ATCACAGTGGCTGTTCTTTT.......................................................	20	3	16.00	48	0	31	0	17	0
...................................................................................................................................................TATCACAGTGGCTGTTCTTTTTTT....................................................	24	2	10.50	21	0	1	0	20	0
.....................................................................................................................................................TCACAGTGGCTGTTCTTTTT......................................................	20	3	10.33	31	0	12	0	19	0
......................................................................................................................................................CACAGTGGCTGTTCTTTTTTGT...................................................	22	1	10.00	10	0	0	0	10	0
...................................................................................................................................................TATCACAGTGGCTGTTCTTTA.......................................................	21	3	9.33	28	0	1	0	27	0
..................................................................................................................................................ATATCACAGTGGCTGTTCTTTT.......................................................	22	3	8.67	26	0	0	0	26	0
...................................................................................................................................................TATCACAGTGGCTGTTCTTTTTTAA...................................................	25	1	8.00	8	0	0	0	8	0
...................................................................................................................................................TATCACAGTGGCTGTTCTTTTAAA....................................................	24	3	7.33	22	0	0	0	22	0
................................................................................................AGGGAACGGTTGCTGTTGA............................................................................................................	19	1	7.00	7	0	0	0	7	0
....................................................................................................................................................ATCACAGTGGCTGTTCTTTTTT.....................................................	22	1	7.00	7	0	3	0	4	0
................................................................................................AGGGAACGGTTGCTGTTGATGTAAA......................................................................................................	25	1	6.00	6	0	0	0	6	0
......................................................................................................................................................CACAGTGGCTGTTCTTTTT......................................................	19	3	6.00	18	0	0	0	18	0
.............................................................................................AGAAGGGAACGGTTGCTGTTGA............................................................................................................	22	1	5.00	5	0	0	0	5	0
..................................................................................................................................................ATATCACAGTGGCTGTTCTTT........................................................	21	3	4.67	14	0	0	0	14	0
...................................................................................................................................................TATCACAGTGGCTGTTCTTTC.......................................................	21	3	4.33	13	0	0	0	13	0
...............................................................................................AAGGGAACGGTTGCTGTTGATG..........................................................................................................	22	1	4.00	4	0	0	0	4	0
................................................................................................AGGGAACGGTTGCTGTTGAT...........................................................................................................	20	1	4.00	4	0	0	0	4	0
.......................................................................................................................................................ACAGTGGCTGTTCTTTTTT.....................................................	19	1	4.00	4	0	0	0	4	0
...................................................................................................................................................TATCACAGTGGCTGTTCTTTTTCC....................................................	24	3	3.67	11	0	0	0	11	0
...................................................................................................................................................TATCACAGTGGCTGTTCTTTAA......................................................	22	4	3.25	13	0	0	0	13	0
...............................................................................................AAGGGAACGGTTGCTGTTGATGTA........................................................................................................	24	1	3.00	3	0	0	0	3	0
.....................................................................................................................................................TCACAGTGGCTGTTCTTTTTT.....................................................	21	1	3.00	3	0	1	0	2	0
...................................................................................................................................................TATCACAGTGGCTGTTCTTTTTTG....................................................	24	1	3.00	3	0	1	0	2	0
....................................................................................................................................................ATCACAGTGGCTGTTCTTT........................................................	19	3	2.67	8	0	7	0	1	0
.......................................................................................................................................................ACAGTGGCTGTTCTTTTTA.....................................................	19	3	2.67	8	0	0	0	8	0
.............................................................................................AGAAGGGAACGGTTGCTGTTGAT...........................................................................................................	23	1	2.00	2	0	0	0	2	0
.....................................................................................................................................................TCACAGTGGCTGTTCTTTT.......................................................	19	3	2.00	6	0	0	0	6	0
...........................CATTTT--------------------------------------------------TTGTTTAAAAAGA...............................................................................................................................	19	1	2.00	2	0	0	0	2	0
.......................................................................................................................GTAT-ACCATTTTG----TTTAACAATA............................................................................	23	1	2.00	2	0	0	0	2	0
.................................................................................................GGGAACGGTTGCTGTTGATGTA........................................................................................................	22	1	2.00	2	0	0	0	2	0
................................................................................................AGGGAACGGTTGCTGTTGATGTG........................................................................................................	23	1	2.00	2	0	0	0	2	0
......................................................................................................................................................CACAGTGGCTGTTCTTTT.......................................................	18	3	1.67	5	0	0	0	5	0
..................................................................................................................................................ATATCACAGTGGCTGTTCTTTTT......................................................	23	3	1.33	4	0	2	0	2	0
..................................................................................................................................................ATATCACAGTGGCTGTTCTT.........................................................	20	3	1.33	4	0	0	0	4	0
.....................................................................................................................................................TCACAGTGGCTGTTCTTTTTAA....................................................	22	3	1.33	4	0	0	0	4	0
...................................................................................................................................................TATCACAGTGGCTGTTCTTTTTTAC...................................................	25	1	1.00	1	0	0	0	1	0
...................................................................................................................................................TATCACAGTGGCTGTTCTTTTTTGT...................................................	25	1	1.00	1	0	0	0	1	0
................................................................................................AGGGAACGGTTGCTGTTGATGTAT.......................................................................................................	24	1	1.00	1	0	0	0	1	0
......................................................................................................................................................CACAGTGGCTGTTCTTTTTTG....................................................	21	1	1.00	1	0	0	0	1	0
................................................................................................AGGGAACGGTTGCTGTTGATGTAG.......................................................................................................	24	1	1.00	1	0	0	0	1	0
............................................................................................................................................AACAATATATCACAGTGGCTGTTCTTTT.......................................................	28	1	1.00	1	0	0	0	1	0
..........................TCATTTT--------------------------------------------------TTGTTTAAAAAGA...............................................................................................................................	20	1	1.00	1	0	0	0	1	0
......................................................................................................................................................CACAGTGGCTGTTCTTTTTTAA...................................................	22	1	1.00	1	0	0	0	1	0
...................................................................................................................................................TATCACAGTGGCTGTTCTTTTTTC....................................................	24	1	1.00	1	0	0	0	1	0
................................................................................................AGGGAACGGTTGCTGTTGATGTT........................................................................................................	23	1	1.00	1	0	0	0	1	0
................................................................................................AGGGAACGGTTGCTGTTGATGTGT.......................................................................................................	24	1	1.00	1	0	0	0	1	0
................................................................................................AGGGAACGGTTGCTGTTGATGC.........................................................................................................	22	1	1.00	1	0	0	0	1	0
.....................................................................................................ACGGTTGCTGTTGATGTA........................................................................................................	18	1	1.00	1	0	0	0	1	0
...................................................................................................................................................TATCACAGTGGCTGTTCTTTTTAAC...................................................	25	3	1.00	3	0	0	0	3	0
...................................................................................................................................................TATCACAGTGGCTGTTCTTTG.......................................................	21	3	1.00	3	0	0	0	3	0

dp5

TCTCCGCCGCCGCGCATTCG--------------------------------------------C-------CAAATTGAAAATTGTTCAAAAAGAAGGGAACGGTTGCTGCTGATGTAGTTC-AAGTTTTGCACAATT------TATATCACAGTGGCTGTTCTTTTTTGTTTGCCAATCGATCA-------------------------------------	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
...................................................................................................................................................TATCACAGTGGCTGTTCTTTTT......................................................	22	3	38201.33	114604	0	6815	107701	78	3	0	7	0	0	0
...................................................................................................................................................TATCACAGTGGCTGTTCTTTT.......................................................	21	3	6091.00	18273	0	1237	17000	29	2	0	5	0	0	0
...................................................................................................................................................TATCACAGTGGCTGTTCTTTTTT.....................................................	23	1	4325.00	4325	0	55	4266	2	0	0	2	0	0	0
...................................................................................................................................................TATCACAGTGGCTGTTCTTTTC......................................................	22	3	1760.00	5280	0	4	5272	4	0	0	0	0	0	0
................................................................................................AGGGAACGGTTGCTGCTGATGTA........................................................................................................	23	1	431.00	431	0	15	280	0	135	0	0	0	0	1
...................................................................................................................................................TATCACAGTGGCTGTTCTTT........................................................	20	3	403.00	1209	0	134	1074	1	0	0	0	0	0	0
....................................................................................................................................................ATCACAGTGGCTGTTCTTTTT......................................................	21	3	194.00	582	0	505	77	0	0	0	0	0	0	0
...................................................................................................................................................TATCACAGTGGCTGTTCTTTC.......................................................	21	3	169.33	508	0	2	506	0	0	0	0	0	0	0
...................................................................................................................................................TATCACAGTGGCTGTTCTTTTTC.....................................................	23	3	159.00	477	0	12	464	1	0	0	0	0	0	0
...................................................................................................................................................TATCACAGTGGCTGTTCTTTTTA.....................................................	23	3	100.00	300	0	22	277	0	0	0	1	0	0	0
...................................................................................................................................................TATCACAGTGGCTGTTCTTC........................................................	20	3	62.00	186	0	0	184	2	0	0	0	0	0	0
...................................................................................................................................................TATCACAGTGGCTGTTCTTTTTTT....................................................	24	2	57.50	115	0	2	112	1	0	0	0	0	0	0
....................................................................................................................................................ATCACAGTGGCTGTTCTTTT.......................................................	20	3	40.00	120	0	106	14	0	0	0	0	0	0	0
..................................................................................................................................................ATATCACAGTGGCTGTTCTTTT.......................................................	22	3	30.33	91	0	7	84	0	0	0	0	0	0	0
...................................................................................................................................................TATCACAGTGGCTGTTCTT.........................................................	19	3	27.67	83	0	24	59	0	0	0	0	0	0	0
...................................................................................................................................................TATCACAGTGGCTGTTCTTTTA......................................................	22	3	24.67	74	0	6	68	0	0	0	0	0	0	0
................................................................................................AGGGAACGGTTGCTGCTGATGT.........................................................................................................	22	1	19.00	19	0	1	12	0	6	0	0	0	0	0
.....................................................................................................................................................TCACAGTGGCTGTTCTTTTT......................................................	20	3	17.00	51	0	32	19	0	0	0	0	0	0	0
..................................................................................................................................................ATATCACAGTGGCTGTTCTTTTT......................................................	23	3	13.67	41	0	8	33	0	0	0	0	0	0	0
................................................................................................AGGGAACGGTTGCTGCTGATG..........................................................................................................	21	1	12.00	12	0	0	6	0	6	0	0	0	0	0
....................................................................................................................................................ATCACAGTGGCTGTTCTTTTTT.....................................................	22	1	12.00	12	0	5	7	0	0	0	0	0	0	0
...................................................................................................................................................TATCACAGTGGCTGTTCTTTTTCC....................................................	24	3	10.67	32	0	6	26	0	0	0	0	0	0	0
...................................................................................................................................................TATCACAGTGGCTGTTCTTTTG......................................................	22	3	10.33	31	0	9	22	0	0	0	0	0	0	0
....................................................................................................................................................ATCACAGTGGCTGTTCTTT........................................................	19	3	8.33	25	0	22	3	0	0	0	0	0	0	0
...................................................................................................................................................TATCACAGTGGCTGTTCTTTG.......................................................	21	3	8.00	24	0	1	23	0	0	0	0	0	0	0
......................................................................................................................................................CACAGTGGCTGTTCTTTTT......................................................	19	3	7.67	23	0	10	13	0	0	0	0	0	0	0
...................................................................................................................................................TATCACAGTGGCTGTTCT..........................................................	18	3	7.00	21	0	8	13	0	0	0	0	0	0	0
...................................................................................................................................................TATCACAGTGGCTGTTCTTTTTTC....................................................	24	1	7.00	7	0	0	7	0	0	0	0	0	0	0
......................................................................................................................................................CACAGTGGCTGTTCTTTTTTGT...................................................	22	1	6.00	6	0	0	6	0	0	0	0	0	0	0
..................................................................................................................................................ATATCACAGTGGCTGTTCTTT........................................................	21	3	5.33	16	0	0	16	0	0	0	0	0	0	0
.......................................................................................................................................................ACAGTGGCTGTTCTTTTT......................................................	18	3	5.00	15	0	3	12	0	0	0	0	0	0	0
................................................................................................AGGGAACGGTTGCTGCTGATGTAA.......................................................................................................	24	1	4.00	4	0	0	1	0	3	0	0	0	0	0
...................................................................................................................................................TATCACAGTGGCTGTTCTTTTTAA....................................................	24	3	4.00	12	0	2	10	0	0	0	0	0	0	0
................................................................................................AGGGAACGGTTGCTGCTGATGTT........................................................................................................	23	1	4.00	4	0	0	2	0	2	0	0	0	0	0
...................................................................................................................................................TATCACAGTGGCTGTTCTTTTCC.....................................................	23	3	3.00	9	0	1	8	0	0	0	0	0	0	0
................................................................................................AGGGAACGGTTGCTGCTGATGTC........................................................................................................	23	1	3.00	3	0	0	2	0	1	0	0	0	0	0
...................................................................................................................................................TATCACAGTGGCTGTTCTTTTTTGTA..................................................	26	1	2.00	2	0	0	2	0	0	0	0	0	0	0
...................................................................................................................................................TATCACAGTGGCTGTTCTTTTAA.....................................................	23	3	2.00	6	0	2	3	0	0	0	1	0	0	0
................................................................................................AGGGAACGGTTGCTGCTGATGC.........................................................................................................	22	1	2.00	2	0	0	2	0	0	0	0	0	0	0
....................................................................................................................................................ATCACAGTGGCTGTTCTTTTC......................................................	21	3	2.00	6	0	1	5	0	0	0	0	0	0	0
..................................................................................................................................................ATATCACAGTGGCTGTTCTTTTTT.....................................................	24	1	2.00	2	0	0	2	0	0	0	0	0	0	0
.....................................................................................................................................................TCACAGTGGCTGTTCTTTTTTGT...................................................	23	1	2.00	2	0	0	2	0	0	0	0	0	0	0
....................................................................................................................................................ATCACAGTGGCTGTTCTT.........................................................	18	3	1.67	5	0	5	0	0	0	0	0	0	0	0
...................................................................................................................................................TATCACAGTGGCTGTTCTC.........................................................	19	3	1.67	5	0	0	5	0	0	0	0	0	0	0
...................................................................................................................................................TATCACAGTGGCTGTTCTTTTTTTC...................................................	25	2	1.50	3	0	0	3	0	0	0	0	0	0	0
...................................................................................................................................................TATCACAGTGGCTGTTCTTTCC......................................................	22	3	1.33	4	0	0	4	0	0	0	0	0	0	0
....................................................................................................................................................ATCACAGTGGCTGTTCTTTTTC.....................................................	22	3	1.33	4	0	3	1	0	0	0	0	0	0	0
...................................................................................................................................................TATCACAGTGGCTGTTCTTTTTCCC...................................................	25	3	1.33	4	0	0	4	0	0	0	0	0	0	0

droPer2

TCTCCGCCGCCGCGCATT---------CAC------------------------------------------CAAATTGAAAATTGTTCAAAAAGAAGGGAACGGTTGCTGCTGATGTAGTTC-AAGTTTCGCACAATT------TATATCACAGTGGCTGTTCTTTTTTGTTTGCCAATCGATCAAC-----------------------------------	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
...................................................................................................................................................TATCACAGTGGCTGTTCTTTTT......................................................	22	3	146.00	438	9	413	0	0	1	15
...................................................................................................................................................TATCACAGTGGCTGTTCTTTT.......................................................	21	3	25.00	75	8	62	0	0	0	5
................................................................................................AGGGAACGGTTGCTGCTGATGTA........................................................................................................	23	1	15.00	15	4	0	11	0	0	0
....................................................................................................................................................ATCACAGTGGCTGTTCTTTTT......................................................	21	3	14.67	44	0	44	0	0	0	0
...................................................................................................................................................TATCACAGTGGCTGTTCTTT........................................................	20	3	5.00	15	6	8	0	0	0	1
................................................................................................AGGGAACGGTTGCTGCTGATG..........................................................................................................	21	1	4.00	4	1	0	2	0	1	0
...................................................................................................................................................TATCACAGTGGCTGTTCTTTTTT.....................................................	23	1	4.00	4	2	2	0	0	0	0
....................................................................................................................................................ATCACAGTGGCTGTTCTTTT.......................................................	20	3	3.00	9	0	9	0	0	0	0
................................................................................................AGGGAACGGTTGCTGCTGATGTAA.......................................................................................................	24	1	2.00	2	0	0	2	0	0	0
................................................................................................AGGGAACGGTTGCTGCTGATGT.........................................................................................................	22	1	1.00	1	0	0	1	0	0	0
................................................................................................AGGGAACGGTTGCTGCTGATGTAGT......................................................................................................	25	1	1.00	1	0	0	1	0	0	0
...................................................................................................................................................TATCACAGTGGCTGTTCTT.........................................................	19	3	1.00	3	0	3	0	0	0	0
.....................................................................................................................................................TCACAGTGGCTGTTCTTTTT......................................................	20	3	0.67	2	0	2	0	0	0	0
...................................................................................................................................................TATCACAGTGGCTGTTCTTC........................................................	20	3	0.33	1	1	0	0	0	0	0
......................................................................................................................................................CACAGTGGCTGTTCTTTTT......................................................	19	3	0.33	1	0	1	0	0	0	0
..................................................................................................................................................ATATCACAGTGGCTGTTCTTTT.......................................................	22	3	0.33	1	0	1	0	0	0	0
.....................................................................................................................................................TCACAGTGGCTGTTCTTTT.......................................................	19	3	0.33	1	0	1	0	0	0	0
...................................................................................................................................................TATCACAGTGGCTGTTCTTTTA......................................................	22	3	0.33	1	0	1	0	0	0	0
...................................................................................................................................................TATCACAGTGGCTGTTCTTTTTA.....................................................	23	3	0.33	1	0	1	0	0	0	0
...................................................................................................................................................TATCACAGTGGCTGTTCTTTTG......................................................	22	3	0.33	1	0	1	0	0	0	0

droAna3

-----------ACGCATTTG-TG---TCACGTTG-G-----------------------TGGACA-------GAAATTGAAAATTGTTCAAAAAGAAGGGAACGGTCGCTGCTGATGTAGTT-----ATTCGCATCATT------TATATCACAGTGGCTGTTCTTTTTTGTTTGCCAATCGATCTACGTT--------------------------------	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
...................................................................................................................................................TATCACAGTGGCTGTTCTTTTT......................................................	22	3	15043.33	45130	367	44752	0	0	7	4
...................................................................................................................................................TATCACAGTGGCTGTTCTTTT.......................................................	21	3	3049.33	9148	97	9039	2	0	2	8
...................................................................................................................................................TATCACAGTGGCTGTTCTTTTTT.....................................................	23	1	2039.00	2039	9	2030	0	0	0	0
...................................................................................................................................................TATCACAGTGGCTGTTCTTTTC......................................................	22	3	462.00	1386	0	1386	0	0	0	0
...................................................................................................................................................TATCACAGTGGCTGTTCTTT........................................................	20	3	276.00	828	26	792	0	0	8	2
................................................................................................AGGGAACGGTCGCTGCTGATGTA........................................................................................................	23	1	65.00	65	1	43	20	0	0	1
...................................................................................................................................................TATCACAGTGGCTGTTCTTTC.......................................................	21	3	57.67	173	0	172	0	0	0	1
...................................................................................................................................................TATCACAGTGGCTGTTCTTC........................................................	20	3	37.00	111	0	111	0	0	0	0
....................................................................................................................................................ATCACAGTGGCTGTTCTTTTT......................................................	21	3	35.67	107	40	67	0	0	0	0
...................................................................................................................................................TATCACAGTGGCTGTTCTTTTTC.....................................................	23	3	34.67	104	0	104	0	0	0	0
...................................................................................................................................................TATCACAGTGGCTGTTCTTTTTA.....................................................	23	3	33.67	101	3	98	0	0	0	0
...................................................................................................................................................TATCACAGTGGCTGTTCTTTTTTT....................................................	24	1	32.00	32	0	32	0	0	0	0
...................................................................................................................................................TATCACAGTGGCTGTTCTT.........................................................	19	3	17.33	52	8	39	0	0	2	3
................................................................................................AGGGAACGGTCGCTGCTGATGT.........................................................................................................	22	1	10.00	10	0	9	1	0	0	0
....................................................................................................................................................ATCACAGTGGCTGTTCTTTTTT.....................................................	22	1	9.00	9	4	5	0	0	0	0
......................................................................................................................................................CACAGTGGCTGTTCTTTTT......................................................	19	3	8.67	26	0	26	0	0	0	0
.....................................................................................................................................................TCACAGTGGCTGTTCTTTTT......................................................	20	3	8.00	24	5	19	0	0	0	0
................................................................................................AGGGAACGGTCGCTGCTGATGC.........................................................................................................	22	1	7.00	7	0	7	0	0	0	0
.......................................................................................................................................................ACAGTGGCTGTTCTTTTT......................................................	18	3	6.00	18	0	18	0	0	0	0
...................................................................................................................................................TATCACAGTGGCTGTTCT..........................................................	18	3	6.00	18	0	18	0	0	0	0
....................................................................................................................................................ATCACAGTGGCTGTTCTTTT.......................................................	20	3	6.00	18	7	11	0	0	0	0
...................................................................................................................................................TATCACAGTGGCTGTTCTTTTA......................................................	22	3	5.33	16	0	15	0	0	0	1
...................................................................................................................................................TATCACAGTGGCTGTTCTTTG.......................................................	21	3	4.33	13	0	13	0	0	0	0
...................................................................................................................................................TATCACAGTGGCTGTTCTTTTG......................................................	22	3	3.33	10	1	9	0	0	0	0
...................................................................................................................................................TATCACAGTGGCTGTTCTTTTTAA....................................................	24	3	3.00	9	1	7	0	0	1	0
....................................................................................................................................................ATCACAGTGGCTGTTCTTT........................................................	19	3	2.00	6	3	3	0	0	0	0
.....................................................................................................................................................TCACAGTGGCTGTTCTTTT.......................................................	19	3	1.67	5	0	5	0	0	0	0
..................................................................................................................................................ATATCACAGTGGCTGTTCTTTT.......................................................	22	3	1.67	5	0	5	0	0	0	0
................................................................................................AGGGAACGGTCGCTGCTGATGTAA.......................................................................................................	24	1	1.00	1	0	1	0	0	0	0
...................................................................................................................................................TATCACAGTGGCTGTTCTTTTTTC....................................................	24	2	1.00	2	0	2	0	0	0	0
................................................................................................AGGGAACGGTCGCTGCTGAT...........................................................................................................	20	1	1.00	1	0	1	0	0	0	0
...................................................................................................................................................TATCACAGTGGCTGTTCTTTTTTG....................................................	24	1	1.00	1	0	1	0	0	0	0
...................................................................................................................................................TATCACAGTGGCTGTTCTC.........................................................	19	3	1.00	3	0	3	0	0	0	0
......................................................................................................................................................CACAGTGGCTGTTCTTTTTTT....................................................	21	1	1.00	1	0	1	0	0	0	0
.......................................................................................................................................................ACAGTGGCTGTTCTTTTTT.....................................................	19	1	1.00	1	0	1	0	0	0	0
....................................................................................................................................................ATCACAGTGGCTGTTCTTTTC......................................................	21	3	1.00	3	0	3	0	0	0	0
......................................................................................................................................................CACAGTGGCTGTTCTTTTTT.....................................................	20	1	1.00	1	0	1	0	0	0	0

droBip1

TCTG--TG-GCACGAATTTG-TGGCATCACCTTG-G-----------------------TGGA-C-------AAAATTGAAAATTGTTCAAAAAGAAGGGAACGGTTGCTGCTGATGTAGTT-----ATTCGCCTCATT------TATATCACAGTGGCTGTTCTTTTTTGTTTGGCAATCGATCTACGTTCTGGATT---------CTGAAAGGAT------	Size	Hit Count	Total Norm	Total
No Reads

droKik1

---G--CC-TCAG-----T-GTA---TCATCTCT-G-----------------------TTG--G-------AAAATTGAAAATTGTTCAAAAAGAAGGGAACGGTTGCTGCTGATGTAGTTCTTAAATTCACACAATT------TATATCACAGTGGCTGTTCTTTTTTGTTTGGCAATCGATCTACGTT--------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droFic1

---------------------TG---TCTCCTCA-A-----------------------TGT--G-------AAAATTGAAAATTGTTCAAAAAGAAGGGAACGGTTGCTGATGATGTAGTTT-GAAATTCTCACCATT------TATATCACAGTGGCTGTTCTTTTTTGTTTGGCAAT-------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droEle1

------------------T-GTG---TCACCTCA-A-----------------------TTT--G-------AAAATTGAAAATTGTTCAAAAAGAAGGGAACGGTTGCCGATGATGTAGTTT-GAAATTCTCACCATT------TATATCACAGTGGCTGTTCTTTTTTGTTTGGCAATCGATCTACGTT--------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droRho1

---------------ATTT-GTG---TCACCTCA-A-----------------------TTT--G-------AAAATTGAAAATTGTTCAAAAAGAAGGGAACCGTTGCTGATGATGTAGTTT-GAAATTCTCACCATT------TATATCACAGTGGCTGTTCTTTTTTATTTGGCAATCGATCTACGTT--------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droBia1

---G--TG-GCACGCATTTG-TG---TCACCTCA-G-----------------------TGC--G-------AAAATTGAAAATTGTCCAAAAAGAAGGGAACGGTTGCTGGTGATGTAGTTC-GAAACTCTCACAGTT------TATATCACAGTGGCTGTTCTTTTTTGTTTGCCAATCGATCTACGTT--------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droTak1

---G--TG-GCATGCATTTG-TG---TCAACTGA-A-----------------------TGT--GAAAACTGAAAATTGAAAATTGTTCAAAAAGAAGGGAACGGTTGCTGATGATGTAGTAC-GAAACTCTCACAATT------TATATCACAGTGGCTGTTCTTTTTTGTTTGGCAATCGATCTACGTT--------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droEug1

---G--TG-GCATGCATTTG-TG---TCACCTCA-A-----------------------TGT--G-------AAAATTGAAAATTGTTCAAAAAGAAGGGAACCGTTGCTGATGGTGTAGTTC-AAAATTCTCACAATT------TATATCACAGTGGCTGTTCTTTTTTGTTTGGCAATCGATCTACGTT--------------------------------	Size	Hit Count	Total Norm	Total
No Reads

dm3

--------------------GTG---TCACCTCA-G-----------------------TGC--G-------AAAATTGAAAATTGTACAAAAAGAAGGGAACGGTTGCTGATGATGTAGTTT-GAAACTCTCACAATT------TATATCACAGTGGCTGTTCTTTTTTGTTTGGCAATCGATCTACGTT--------------------------------	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
................................................................................................AGGGAACGGTTGCTGATGATGTA........................................................................................................	23	1	38897.00	38897	0	0	0	0	3	0	332	428	5	8	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	345	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	7583	1250	135	102	3889	2	1	0	1	1	0	0	0	4	0	0	2	0	5	8	266	0	9	7	19	1004	1171	15	0	0	475	19	8	1090	0	0	1	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	28	1172	1412	901	213	0	2	0	0	0	0	0	5	1	0	0	0	0	0	0	0	0	0	0	0	0	1	2	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	2	0	2	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	68	32	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0	3	4	0	1	1	3	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	1	0	0	0	1	2	0	16730	9	0	1	14	0	0	0	1	0	0	1	0	0	0	0	0	2	0	3	2	8	2	1	1	2	6	6	3	2	2	0	2	10	1	19	0	5	1	0	1	0	0
...................................................................................................................................................TATCACAGTGGCTGTTCTTTTT......................................................	22	3	20801.00	62403	0	0	0	0	8	1	357	2224	923	525	1	3	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	47	2	17	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	154	592	112	442	121	6275	93	4304	615	4	1	618	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	97	0	80	0	77	0	123	0	0	0	0	0	0	0	0	6	37004	6481	7	9	13	0	0	60	0	59	0	0	0	0	1	0	0	0	3	17	5	38	4	21	2	5	36	10	4	2	4	3	8	68	269	366	6	8	5	9	13	24	0
...................................................................................................................................................TATCACAGTGGCTGTTCTTTTTT.....................................................	23	1	6947.00	6947	0	0	0	0	5	0	72	1753	512	128	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	21	64	7	20	25	708	5	462	18	0	1	29	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	0	1	2479	619	2	0	1	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	1	0	1	0	0	0	0	0	1	0	0
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...............................................................................................AAGGGAACGGTTGCTGATGATG..........................................................................................................	22	1	30.00	30	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	10	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................ATCACAGTGGCTGTTCTTTTT......................................................	21	3	29.67	89	0	0	0	0	0	0	0	3	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	4	1	5	3	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	57	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0
.................................................................................................GGGAACGGTTGCTGATGATGT.........................................................................................................	21	1	27.00	27	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	8	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................AGGGAACGGTTGCTGATGATGTAAA......................................................................................................	25	1	25.00	25	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	2	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................TATCACAGTGGCTGTTCTTTTG......................................................	22	3	25.00	75	0	0	0	0	1	0	8	28	12	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	9	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
................................................................................................AGGGAACGGTTGCTGATGATGC.........................................................................................................	22	1	22.00	22	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................TATCACAGTGGCTGTTCTTTTTTC....................................................	24	1	21.00	21	0	0	0	0	0	0	1	0	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	14	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................GTTT-GAAACTCTCACAATT------TA............................................................................	21	1	21.00	21	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	7	0	0	0	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................ATCACAGTGGCTGTTCTTTTTT.....................................................	22	1	21.00	21	0	0	0	0	0	0	0	4	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	9	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

--------------------GTG---TCACCTCA-G-----------------------TGC--G-------AAAATTGAAAATTGTACAAAAAGAAGGGAACGGTTGCTGATGATGTAGTTC-GAAACTCTCACAATT------TATATCACAGTGGCTGTTCTTTTTTGTTTGGCAATCGATCTACGTT--------------------------------	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
...................................................................................................................................................TATCACAGTGGCTGTTCTTTTT......................................................	22	3	816.00	2448	0	0	79	797	27	222	825	375	53	60	1	3	1	5	0	0	0
...................................................................................................................................................TATCACAGTGGCTGTTCTTTT.......................................................	21	3	162.67	488	1	0	81	119	9	45	124	73	12	15	4	1	0	4	0	0	0
................................................................................................AGGGAACGGTTGCTGATGATGTA........................................................................................................	23	1	137.00	137	0	0	17	1	0	0	9	2	13	13	0	76	2	4	0	0	0
...................................................................................................................................................TATCACAGTGGCTGTTCTTTTTT.....................................................	23	1	96.00	96	0	0	76	8	0	2	4	4	1	0	0	0	0	1	0	0	0
...................................................................................................................................................TATCACAGTGGCTGTTCTT.........................................................	19	3	61.33	184	0	0	2	1	27	135	6	2	6	4	1	0	0	0	0	0	0
...................................................................................................................................................TATCACAGTGGCTGTTCTTT........................................................	20	3	50.67	152	0	0	33	12	3	57	16	14	9	5	2	0	0	1	0	0	0
...................................................................................................................................................TATCACAGTGGCTGTTCTTTTTA.....................................................	23	3	50.67	152	0	0	0	1	0	0	90	61	0	0	0	0	0	0	0	0	0
...................................................................................................................................................TATCACAGTGGCTGTTCTTTTTAA....................................................	24	3	43.33	130	0	0	0	0	0	0	78	52	0	0	0	0	0	0	0	0	0
...................................................................................................................................................TATCACAGTGGCTGTTCT..........................................................	18	3	39.00	117	0	0	0	0	6	105	1	4	0	0	1	0	0	0	0	0	0
................................................................................................AGGGAACGGTTGCTGATGATG..........................................................................................................	21	1	25.00	25	0	0	3	0	0	0	0	0	5	3	0	13	0	1	0	0	0
................................................................................................AGGGAACGGTTGCTGATGATGT.........................................................................................................	22	1	22.00	22	0	0	1	1	0	0	1	1	5	1	0	12	0	0	0	0	0
..........................................................................................................................................................GTGGCTGTTCTTTTT......................................................	15	3	18.67	56	0	0	0	0	0	0	0	0	27	28	1	0	0	0	0	0	0
....................................................................................................................................................ATCACAGTGGCTGTTCTTTTT......................................................	21	3	18.33	55	0	0	0	55	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................TATCACAGTGGCTGT.............................................................	15	3	15.00	45	0	0	0	0	0	0	0	0	12	30	2	0	1	0	0	0	0
...................................................................................................................................................TATCACAGTGGCTGTTCTTTTAA.....................................................	23	3	13.33	40	0	0	0	0	0	0	21	19	0	0	0	0	0	0	0	0	0
...................................................................................................................................................TATCACAGTGGCTGTTCTTTTAAA....................................................	24	3	12.67	38	0	0	0	0	0	0	21	17	0	0	0	0	0	0	0	0	0
...................................................................................................................................................TATCACAGTGGCTGTTCTTTTA......................................................	22	3	7.33	22	0	0	0	0	0	0	12	8	1	0	1	0	0	0	0	0	0
................................................................................................AGGGAACGGTTGCTGATGAT...........................................................................................................	20	1	4.00	4	0	0	2	0	0	0	0	0	1	0	0	1	0	0	0	0	0
................................................................................................AGGGAACGGTTGCTGATGATGTAT.......................................................................................................	24	1	3.00	3	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0
....................................................................................................................................................ATCACAGTGGCTGTTCTTTT.......................................................	20	3	2.67	8	0	0	0	5	3	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................TATCACAGTGGCTGTT............................................................	16	3	2.67	8	0	0	0	0	0	0	1	0	0	5	2	0	0	0	0	0	0
...................................................................................................................................................TATCACAGTGGCTGTTCTTTTTTT....................................................	24	2	2.50	5	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................GTTC-GAAACTCTCACAATT------TA............................................................................	21	1	2.00	2	0	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0
................................................................................................AGGGAACGGTTGCTGATGATGTAA.......................................................................................................	24	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0
............................ACCTCA-G-----------------------TGC--G-------AAAATTG................................................................................................................................................	18	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................AAGGGAACGGTTGCTGATGATGTA........................................................................................................	24	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0
...................................................................................................................................................TATCACAGTGGCTGTTCTTTTTTAA...................................................	25	2	1.50	3	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................TCACAGTGGCTGTTCTTTTT......................................................	20	3	1.33	4	0	0	0	3	0	0	1	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................TATCACAGTGGCTGTTCTTTA.......................................................	21	3	1.33	4	0	0	0	0	0	0	2	2	0	0	0	0	0	0	0	0	0
.......................................................................................................................GTTC-GAAACTCTCACAATT------..............................................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................TGTTTGGCAATCGATCTACG..................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
................................................................................................AGGGAACGGTTGCTGATGATGTT........................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
................................................................................................AGGGAACGGTTGCTGATGATGTAGT......................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
...............................................................................................AAGGGAACGGTTGCTGATGATG..........................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
.......................................................................................................................GTTC-GAAACTCTCACAATT------T.............................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................AGGGAACGGTTGCTGATGG............................................................................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................AAGGGAACGGTTGCTGATGAT...........................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
...................................................................................................................................................TATCACAGTGGCTGTTCTTTTTTA....................................................	24	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
.............................................................................................AGAAGGGAACGGTTGCTGATGA............................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
....................................................................................................AACGGTTGCTGATGATGTA........................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
.............................................................................................AGAAGGGAACGGTTGCTGATG.............................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
....................................................................................................................................................ATCACAGTGGCTGTTCTTTTTA.....................................................	22	3	0.67	2	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0
...................................................................................................................................................TATCACAGTGGCTGTTCTTTG.......................................................	21	3	0.67	2	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0

droSec2

--------------------GTG---TCACCTCA-G-----------------------TGC--G-------AAAATTGAAAATTGTACAAAAAGAAGGGAACGGTTGCTGATGATGTAGTTC-GAAACTCTCACAATT------TATATCACAGTGGCTGTTCTTTTTTGTTTGGCAATCGATCTACGTT--------------------------------	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
...................................................................................................................................................TATCACAGTGGCTGTTCTTTTT......................................................	22	3	27140.33	81421	1713	14	78922	772
...................................................................................................................................................TATCACAGTGGCTGTTCTTTT.......................................................	21	3	8065.33	24196	227	10	23821	138
...................................................................................................................................................TATCACAGTGGCTGTTCTTT........................................................	20	3	1417.00	4251	23	3	4190	35
...................................................................................................................................................TATCACAGTGGCTGTTCTTTTTT.....................................................	23	1	502.00	502	6	1	494	1
................................................................................................AGGGAACGGTTGCTGATGATGTA........................................................................................................	23	1	262.00	262	14	2	242	4
...................................................................................................................................................TATCACAGTGGCTGTTCTT.........................................................	19	3	259.67	779	3	0	757	19
...................................................................................................................................................TATCACAGTGGCTGTTCTTTTTA.....................................................	23	3	126.33	379	2	0	368	9
.......................................................................................................................................................ACAGTGGCTGTTCTTTTT......................................................	18	3	112.00	336	0	0	334	2
....................................................................................................................................................ATCACAGTGGCTGTTCTTTTT......................................................	21	3	92.00	276	147	0	128	1
...................................................................................................................................................TATCACAGTGGCTGTTCT..........................................................	18	3	67.33	202	1	0	196	5
................................................................................................AGGGAACGGTTGCTGATGATGT.........................................................................................................	22	1	35.00	35	0	0	35	0
...................................................................................................................................................TATCACAGTGGCTGTTCTTTTA......................................................	22	3	32.33	97	2	0	94	1
...................................................................................................................................................TATCACAGTGGCTGTTCTTTTC......................................................	22	3	29.00	87	1	0	85	1
.....................................................................................................................................................TCACAGTGGCTGTTCTTTTT......................................................	20	3	19.67	59	10	0	48	1
................................................................................................AGGGAACGGTTGCTGATGATG..........................................................................................................	21	1	15.00	15	0	0	15	0
...................................................................................................................................................TATCACAGTGGCTGTTCTTTTTAA....................................................	24	3	14.00	42	0	0	41	1
....................................................................................................................................................ATCACAGTGGCTGTTCTTTT.......................................................	20	3	11.33	34	23	0	11	0
...................................................................................................................................................TATCACAGTGGCTGTTCTTTTTC.....................................................	23	3	11.00	33	1	0	32	0
...................................................................................................................................................TATCACAGTGGCTGTTCTTTTG......................................................	22	3	7.33	22	2	0	20	0
...................................................................................................................................................TATCACAGTGGCTGTTCTTTTTTT....................................................	24	2	7.00	14	0	0	14	0
......................................................................................................................................................CACAGTGGCTGTTCTTTTT......................................................	19	3	6.33	19	2	0	17	0
.....................................................................................................................................................TCACAGTGGCTGTTCTTTT.......................................................	19	3	5.33	16	2	0	14	0
...................................................................................................................................................TATCACAGTGGCTGTTCTTTA.......................................................	21	3	4.33	13	0	0	13	0
...................................................................................................................................................TATCACAGTGGCTGTTCTTTTTTG....................................................	24	1	4.00	4	0	0	4	0
...............................................................................................AAGGGAACGGTTGCTGATGATGTA........................................................................................................	24	1	4.00	4	0	0	4	0
....................................................................................................................................................ATCACAGTGGCTGTTCTTTTTT.....................................................	22	1	4.00	4	1	0	3	0
................................................................................................AGGGAACGGTTGCTGATGAT...........................................................................................................	20	1	4.00	4	0	1	3	0
................................................................................................AGGGAACGGTTGCTGATGATGTAA.......................................................................................................	24	1	4.00	4	0	0	4	0
...................................................................................................................................................TATCACAGTGGCTGTTCTTTC.......................................................	21	3	3.67	11	0	0	11	0
...................................................................................................................................................TATCACAGTGGCTGTTCTTTTAA.....................................................	23	3	3.33	10	0	0	10	0
................................................................................................AGGGAACGGTTGCTGATGATGTAG.......................................................................................................	24	1	3.00	3	0	0	3	0
....................................................................................................................................................ATCACAGTGGCTGTTCTTT........................................................	19	3	2.33	7	5	0	2	0
......................................................................................................................................................CACAGTGGCTGTTCTTTT.......................................................	18	3	2.33	7	1	0	6	0
...................................................................................................................................................TATCACAGTGGCTGTTCTTTTTTA....................................................	24	1	2.00	2	0	0	2	0
...................................................................................................................................................TATCACAGTGGCTGTTCTTTG.......................................................	21	3	2.00	6	2	0	4	0
...................................................................................................................................................TATCACAGTGGCTGTTCTTTTTTC....................................................	24	1	1.00	1	0	0	1	0
...................................................................................................................................................TATCACAGTGGCTGTTCTTTTTTGT...................................................	25	1	1.00	1	0	0	1	0
...............................................................................................AAGGGAACGGTTGCTGATGATG..........................................................................................................	22	1	1.00	1	0	0	1	0
..........................................................................................................................................T------TATATCACAGTGGCTGTTCT..........................................................	21	1	1.00	1	0	0	1	0
.....................................................................................................................................................TCACAGTGGCTGTTCTTTTTTG....................................................	22	1	1.00	1	0	0	1	0
...................................................................................................................................................TATCACAGTGGCTGTTCTTA........................................................	20	3	1.00	3	0	0	3	0
...................................................................................................................................................TATCACAGTGGCTGTTCTTC........................................................	20	3	1.00	3	0	0	2	1
..................................................................................................................................................ATATCACAGTGGCTGTTCTTTT.......................................................	22	3	1.00	3	0	0	3	0
................................................................................................AGGGAACGGTTGCTGATGATGTAT.......................................................................................................	24	1	1.00	1	0	0	1	0
....................................................................................................................................................ATCACAGTGGCTGTTCTTTTTA.....................................................	22	3	1.00	3	0	0	3	0
...................................................................................................................................................TATCACAGTGGCTGTTCTTTTAAA....................................................	24	3	0.67	2	0	0	2	0

droYak3

TTTG--TG-GCCCGCATTTT-TG---TCACCTCA-G-----------------------TGC--G-------AAAATTGAAAATTGTTCAAAAAGAAGGGAACGGTTGCTGATGATGTAGTTC-GAAACTCTCTCAATT------TATATCACAGTGGCTGTTCTTTTTTATTTGGCAATCGATCTACATT--------------------------------	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
...................................................................................................................................................TATCACAGTGGCTGTTCTTTTT......................................................	22	3	88528.67	265586	0	234	265335	5	0	0	12	0	0	0	0
...................................................................................................................................................TATCACAGTGGCTGTTCTTTT.......................................................	21	3	15870.00	47610	0	63	47538	1	0	0	8	0	0	0	0
...................................................................................................................................................TATCACAGTGGCTGTTCTTTTTT.....................................................	23	1	10507.00	10507	0	2	10505	0	0	0	0	0	0	0	0
...................................................................................................................................................TATCACAGTGGCTGTTCTTTTC......................................................	22	3	2566.67	7700	0	0	7700	0	0	0	0	0	0	0	0
...................................................................................................................................................TATCACAGTGGCTGTTCTTT........................................................	20	3	1006.67	3020	0	15	3003	1	0	0	1	0	0	0	0
................................................................................................AGGGAACGGTTGCTGATGATGTA........................................................................................................	23	1	878.00	878	0	0	776	102	0	0	0	0	0	0	0
...................................................................................................................................................TATCACAGTGGCTGTTCTTTC.......................................................	21	3	276.00	828	0	0	828	0	0	0	0	0	0	0	0
................................................................................................AGGGAACGGTTGCTGATGATGT.........................................................................................................	22	1	177.00	177	0	1	159	17	0	0	0	0	0	0	0
...................................................................................................................................................TATCACAGTGGCTGTTCTTTTTC.....................................................	23	3	165.00	495	0	1	494	0	0	0	0	0	0	0	0
...................................................................................................................................................TATCACAGTGGCTGTTCTTC........................................................	20	3	138.33	415	0	0	415	0	0	0	0	0	0	0	0
...................................................................................................................................................TATCACAGTGGCTGTTCTTTTTTT....................................................	24	2	104.50	209	0	0	209	0	0	0	0	0	0	0	0
....................................................................................................................................................ATCACAGTGGCTGTTCTTTTT......................................................	21	3	92.00	276	0	9	267	0	0	0	0	0	0	0	0
...................................................................................................................................................TATCACAGTGGCTGTTCTTTTTA.....................................................	23	3	90.33	271	0	2	269	0	0	0	0	0	0	0	0
...................................................................................................................................................TATCACAGTGGCTGTTCTT.........................................................	19	3	62.00	186	0	2	184	0	0	0	0	0	0	0	0
................................................................................................AGGGAACGGTTGCTGATGATG..........................................................................................................	21	1	49.00	49	1	0	40	8	0	0	0	0	0	0	0
.......................................................................................................................................................ACAGTGGCTGTTCTTTTT......................................................	18	3	47.00	141	0	1	140	0	0	0	0	0	0	0	0
................................................................................................AGGGAACGGTTGCTGATGATGC.........................................................................................................	22	1	33.00	33	0	0	33	0	0	0	0	0	0	0	0
...................................................................................................................................................TATCACAGTGGCTGTTCTTTTA......................................................	22	3	31.33	94	0	0	94	0	0	0	0	0	0	0	0
.....................................................................................................................................................TCACAGTGGCTGTTCTTTTT......................................................	20	3	22.33	67	0	0	67	0	0	0	0	0	0	0	0
.............................................................................................AGAAGGGAACGGTTGCTGATGAT...........................................................................................................	23	1	22.00	22	0	0	19	2	0	1	0	0	0	0	0
......................................................................................................................................................CACAGTGGCTGTTCTTTTT......................................................	19	3	21.00	63	0	1	62	0	0	0	0	0	0	0	0
...................................................................................................................................................TATCACAGTGGCTGTTCTTTG.......................................................	21	3	16.67	50	0	0	50	0	0	0	0	0	0	0	0
...............................................................................................AAGGGAACGGTTGCTGATGATGT.........................................................................................................	23	1	15.00	15	0	0	13	2	0	0	0	0	0	0	0
...................................................................................................................................................TATCACAGTGGCTGTTCTTTTTTC....................................................	24	1	13.00	13	0	0	13	0	0	0	0	0	0	0	0
....................................................................................................................................................ATCACAGTGGCTGTTCTTTT.......................................................	20	3	12.67	38	0	2	36	0	0	0	0	0	0	0	0
....................................................................................................................................................ATCACAGTGGCTGTTCTTTTTT.....................................................	22	1	12.00	12	0	1	11	0	0	0	0	0	0	0	0
......................................................................................................................................................CACAGTGGCTGTTCTTTTTT.....................................................	20	1	9.00	9	0	0	9	0	0	0	0	0	0	0	0
.............................................................................................AGAAGGGAACGGTTGCTGATGA............................................................................................................	22	1	9.00	9	0	0	7	2	0	0	0	0	0	0	0
.............................................................................................AGAAGGGAACGGTTGCTGATG.............................................................................................................	21	1	9.00	9	0	0	7	2	0	0	0	0	0	0	0
................................................................................................AGGGAACGGTTGCTGATGA............................................................................................................	19	1	8.00	8	0	0	7	1	0	0	0	0	0	0	0
...................................................................................................................................................TATCACAGTGGCTGTTCT..........................................................	18	3	7.33	22	0	1	21	0	0	0	0	0	0	0	0
.......................................................................................................................................................ACAGTGGCTGTTCTTTTTT.....................................................	19	1	7.00	7	0	0	7	0	0	0	0	0	0	0	0
...............................................................................................AAGGGAACGGTTGCTGATGATGTA........................................................................................................	24	1	6.00	6	0	0	4	2	0	0	0	0	0	0	0
..................................................................................................................................................ATATCACAGTGGCTGTTCTTTT.......................................................	22	3	5.67	17	0	0	17	0	0	0	0	0	0	0	0
...................................................................................................................................................TATCACAGTGGCTGTTCTTTTG......................................................	22	3	5.67	17	0	0	17	0	0	0	0	0	0	0	0
....................................................................................................................................................ATCACAGTGGCTGTTCTTTTC......................................................	21	3	4.67	14	0	0	14	0	0	0	0	0	0	0	0
................................................................................................AGGGAACGGTTGCTGATGAT...........................................................................................................	20	1	4.00	4	0	0	4	0	0	0	0	0	0	0	0
.....................................................................................................................................................TCACAGTGGCTGTTCTTTTTT.....................................................	21	1	4.00	4	0	0	4	0	0	0	0	0	0	0	0
................................................................................................AGGGAACGGTTGCTGATGATGTT........................................................................................................	23	1	4.00	4	0	0	4	0	0	0	0	0	0	0	0
.............................................................................................AGAAGGGAACGGTTGCTGATGAC...........................................................................................................	23	1	3.00	3	0	0	3	0	0	0	0	0	0	0	0
....................................................................................................................................................ATCACAGTGGCTGTTCTTTTTTT....................................................	23	2	3.00	6	0	0	6	0	0	0	0	0	0	0	0

droEre2

--------------------GTG---TCACCTTG-G-----------------------TGC--G-------AAAATTGAAAATTGTTCAAAAAGAAGGGAACGGTGGCTGATGATGTAGTTC-GAAACTCTCACAATT------TATATCACAGTGGCTGTTCTTTTTTGTTTGCCAAT-------------------------------------------	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
...................................................................................................................................................TATCACAGTGGCTGTTCTTTTT......................................................	22	3	10965.67	32897	4900	27970	0	5	6	16	0
...................................................................................................................................................TATCACAGTGGCTGTTCTTTT.......................................................	21	3	2527.67	7583	713	6863	0	1	5	1	0
...................................................................................................................................................TATCACAGTGGCTGTTCTTTTTT.....................................................	23	1	1065.00	1065	35	1030	0	0	0	0	0
...................................................................................................................................................TATCACAGTGGCTGTTCTTTTC......................................................	22	3	198.00	594	9	585	0	0	0	0	0
...................................................................................................................................................TATCACAGTGGCTGTTCTTT........................................................	20	3	195.67	587	75	505	0	1	2	4	0
....................................................................................................................................................ATCACAGTGGCTGTTCTTTTT......................................................	21	3	131.67	395	370	25	0	0	0	0	0
................................................................................................AGGGAACGGTGGCTGATGATGTA........................................................................................................	23	1	44.00	44	8	8	0	28	0	0	0
...................................................................................................................................................TATCACAGTGGCTGTTCTTTC.......................................................	21	3	26.00	78	1	77	0	0	0	0	0
...................................................................................................................................................TATCACAGTGGCTGTTCTTTTTC.....................................................	23	3	19.00	57	1	56	0	0	0	0	0
...................................................................................................................................................TATCACAGTGGCTGTTCTTTTTA.....................................................	23	3	18.67	56	16	38	0	0	0	2	0
....................................................................................................................................................ATCACAGTGGCTGTTCTTTT.......................................................	20	3	17.33	52	41	11	0	0	0	0	0
...................................................................................................................................................TATCACAGTGGCTGTTCTTC........................................................	20	3	16.33	49	0	48	0	1	0	0	0
...................................................................................................................................................TATCACAGTGGCTGTTCTT.........................................................	19	3	14.33	43	10	30	0	1	1	1	0
................................................................................................AGGGAACGGTGGCTGATGATGT.........................................................................................................	22	1	11.00	11	3	5	0	3	0	0	0
.....................................................................................................................................................TCACAGTGGCTGTTCTTTTT......................................................	20	3	10.67	32	23	9	0	0	0	0	0
...................................................................................................................................................TATCACAGTGGCTGTTCTTTTTTT....................................................	24	2	9.00	18	0	17	0	1	0	0	0
................................................................................................AGGGAACGGTGGCTGATGATG..........................................................................................................	21	1	6.00	6	1	2	0	3	0	0	0
...................................................................................................................................................TATCACAGTGGCTGTTCTTTTA......................................................	22	3	5.33	16	6	10	0	0	0	0	0
....................................................................................................................................................ATCACAGTGGCTGTTCTTTTTT.....................................................	22	1	5.00	5	4	1	0	0	0	0	0
...................................................................................................................................................TATCACAGTGGCTGTTCTTTTTTG....................................................	24	1	4.00	4	2	2	0	0	0	0	0
...................................................................................................................................................TATCACAGTGGCTGTTCTTTG.......................................................	21	3	2.33	7	4	3	0	0	0	0	0
......................................................................................................................................................CACAGTGGCTGTTCTTTTT......................................................	19	3	2.00	6	1	5	0	0	0	0	0
....................................................................................................................................................ATCACAGTGGCTGTTCTTT........................................................	19	3	2.00	6	6	0	0	0	0	0	0
................................................................................................AGGGAACGGTGGCTGATGATGC.........................................................................................................	22	1	2.00	2	0	2	0	0	0	0	0
...................................................................................................................................................TATCACAGTGGCTGTTCTTTTTCC....................................................	24	3	1.67	5	0	5	0	0	0	0	0
..................................................................................................................................................ATATCACAGTGGCTGTTCTTTTT......................................................	23	3	1.33	4	2	2	0	0	0	0	0
..................................................................................................................................................ATATCACAGTGGCTGTTCTTTT.......................................................	22	3	1.33	4	1	3	0	0	0	0	0
.......................................................................................................................................................ACAGTGGCTGTTCTTTTT......................................................	18	3	1.33	4	0	4	0	0	0	0	0
...................................................................................................................................................TATCACAGTGGCTGTTCTTTCC......................................................	22	3	1.00	3	0	3	0	0	0	0	0
.................................................................................................GGGAACGGTGGCTGATGATGTA........................................................................................................	22	1	1.00	1	1	0	0	0	0	0	0
.......................................................................................................................GTTC-GAAACTCTCACAATT------TA............................................................................	21	1	1.00	1	1	0	0	0	0	0	0
.......................................................................................................................................AATT------TATATCACAGTGGCTGTTCTTTTT......................................................	28	1	1.00	1	0	1	0	0	0	0	0
...................................................................................................................................................TATCACAGTGGCTGTTCTTTA.......................................................	21	3	1.00	3	0	3	0	0	0	0	0
................................................................................................AGGGAACGGTGGCTGATGATGTAT.......................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0
...................................................................................................GAACGGTGGCTGATGATG..........................................................................................................	18	1	1.00	1	0	0	0	1	0	0	0
...................................................................................................................................................TATCACAGTGGCTGTTCT..........................................................	18	3	1.00	3	2	1	0	0	0	0	0
......................................................................................................................................................CACAGTGGCTGTTCTTTTTTGT...................................................	22	1	1.00	1	0	1	0	0	0	0	0
................................................................................................AGGGAACGGTGGCTGATGA............................................................................................................	19	1	1.00	1	0	0	0	1	0	0	0
................................................................................................AGGGAACGGTGGCTGATGATGTAG.......................................................................................................	24	1	1.00	1	0	0	0	1	0	0	0
.................................................................................................GGGAACGGTGGCTGATGATGT.........................................................................................................	21	1	1.00	1	1	0	0	0	0	0	0
...................................................................................................................................................TATCACAGTGGCTGTTCTTTTTTC....................................................	24	1	1.00	1	0	1	0	0	0	0	0
.....................................................................................................................................................TCACAGTGGCTGTTCTTTTTTGT...................................................	23	1	1.00	1	0	1	0	0	0	0	0
...................................................................................................................................................TATCACAGTGGCTGTTCTTTTCC.....................................................	23	3	0.67	2	0	2	0	0	0	0	0
...................................................................................................................................................TATCACAGTGGCTGTTCTTTTTAA....................................................	24	3	0.67	2	2	0	0	0	0	0	0
.....................................................................................................................................................TCACAGTGGCTGTTCTTTT.......................................................	19	3	0.67	2	0	2	0	0	0	0	0

dgr-mir-6-6

scaffold_5621:3701-3774 +

Known

Unknown

intergenic

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-27.3	-27.2	-27.1