dgr-mir-6-4

GTGACTTCTGTTTGCATTTCCGTTTCCGATTTGTGGTTTATAGCCTTTAATGTAAAGAGAATAGATGCTGTGCTGTATGTTGAACGTATTGTCTATATCACAGTGGCTGTTCTTTTTGTACCAAAAGTGCCGTACAACAAAATGAGTAATGTTATCAACCGCTGCATAAA *********************************...(((.((((((..((((((((((((((..((((((..((((((...)))))).........))))))..))))))))))))))...)))).)).))).*********************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V109 male body	M041 female body
...............................................................................................TATCACAGTGGCTGTTCTTTTT.....................................................	22	0	6	2.50	15	5	10
...............................................................................................TATCACAGTGGCTGTTCTTTT......................................................	21	0	6	1.83	11	9	2
...............................................................................................TATCACAGTGGCTGTTCTTT.......................................................	20	0	6	0.33	2	2	0
...............................................................................................TATCACTGTGGCTGTTCTTTTT.....................................................	22	1	6	0.17	1	1	0
...............................................................................................TATCACAGTGGCTGGTCTTTT......................................................	21	1	6	0.17	1	1	0

CACTGAAGACAAACGTAAAGGCAAAGGCTAAACACCAAATATCGGAAATTACATTTCTCTTATCTACGACACGACATACAACTTGCATAACAGATATAGTGTCACCGACAAGAAAAACATGGTTTTCACGGCATGTTGTTTTACTCATTACAATAGTTGGCGACGTATTT *********************************...(((.((((((..((((((((((((((..((((((..((((((...)))))).........))))))..))))))))))))))...)))).)).))).*********************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M041 female body
......................................................................................................................ATGGTTTTCACCGGATGT..................................	18	2	20	0.05	1	1

Species	Coordinate	ID	Type	Alignment
droGri2	scaffold_5621:3348-3517 +	dgr-mir-6-4	Known_mirbase	GTGACTTCTGTTTGCATTTCCGTTTC-CGATTTGTGGT----TTATAGCCTTTAA--------TGTAAAGAGAATAGATGCTGTGCTG-TATGTTGAA-C-GTATTGTCTATATCACAGTGGCTGTTCTTTTTGTACCAAAAGTGCCGTACAA---------------------------CAAAATGAGT------------AAT----------------------------------GTTATCAACCGC--T--G---CATA-AA
droVir3	scaffold_12875:4112589-4112766 +	dvi-mir-6-1	Known_mirbase	GACTTAAAA--------CTATATCGCCC----AGTTATCTGTTTATAGCCTTTAA--------AGTAGAGAGAATAGACGCTGTGCTG-TATGTTTTG-C-GTATGGTCTATATCACAGTGGCTGTTCTTTTTGTACCTGAAGCGCCGTACAA---------------------------CGTTGA---T--T----TCTT----AAATTGTGAAAATTGAATAA---------ATAT---------TT-----GCT---GACAAAT
droMoj3	scaffold_6496:20936296-20936420 -	dmo-mir-6-1	Known_mirbase	TGTATATAT--------ATTTATTTCTC---TAGTGTT----TTTTCGCCTTTAA--------AGTAGAGAGAATAGATGCTGTG------AGTATAT-CTGTTGCATTTATATCACAGTGGCTGTTCTTTTTGTACCTAAATGGCCAGACAG---------------------------CA-------------------------------------------------------------------------------------
droWil2	scf2_1100000004514:1651260-1651428 -	dwi-mir-6-1	Known_mirbase	GTTTT----------------------C---AAGTGGTTTTCAACCAGCCTTTAA--------AGTAGAGAGAATAGTTGCTGTGTTT-TATGCCCTT-T-TC-AATTTCATATCACAGTGGCTGTTCTTTTTGTGCCTAAAGTGCCCCACAA---------------------------CAACAA---C--A----AC---AAC-ACATTCAAAATATTAACAAAAATATTATTT---AG--------T------G---AAGT-GT
dp5	3:12677046-12677181 -	dps-mir-6-1	Known_mirbase	----------------------------------------------AGCCTTTGA--------AGTAGAGAGAATAGTTGCTGTGCTA-TATGTCCTT-CGAC--TCTATATATCACAGTGGCTGTTCTTTTTGTACCTAAAGTGCCAAACAGCCAAG------GAATCGCGTTG------------------------TGCAGT----------------------------------GCTTCCAGTT-----ACT---GACA-AA
droPer2	scaffold_2:8906491-8906626 +	dpe-mir-6-1	Known_mirbase	----------------------------------------------AGCCTTTGA--------AGTAGAGAGAATAGTTGCTGTGCTA-TATGTCCTT-CGAC--TCTATATATCACAGTGGCTGTTCTTTTTGTACCTAAAGTGCCAAACAGCCAAG------GAATCGCGTTG------------------------TGCAGT----------------------------------GCTTCCAGTT-----ACT---CACA-AA
droAna3	scaffold_13266:9731834-9731948 +	dan-mir-6-1	Known_mirbase	----------------------------------------------------------------------------GTGGCTGTGCTG-TAAGTTTCA------AAATCTATATCACAGTGGCTGTTCTTTTTGCACCTAAAGTGCCAAACAGCCAA-ACCCGAGAAT------G-------TTC------------TG---------------------------------TGAT----TT-T---T-CGTTATCCGACGACA-AA
droBip1	scf7180000396427:874766-874894 +			-----------------------------------------------GCCTTTAA--------AGTAGAGAGAATAGTGGCTGTGCTG-TATGTTACC-A------TTCTATATCACAGTGGCTGTTCTTTTTGCACCTAAAGTGCCAAACAGCCAAGACCCAAGAAT-----------------------------TG---------------------------------TGAT----TT-T---T-CGCCATCC---GACA-GA
droKik1	scf7180000302679:88780-88944 -			AAGGCTC--ATTTGGGTTTATATTTTCT---TAGTGTG----ACATTTCTTCTACCGTGGTTAGCCCCAGGGAACTGCTGCTG--CTGATATATTA-T-CAAGAATTTCTATATCACAGTGGCTGTTCTTTTTGGTTGCACG--GC-CAAGTT-------CAGCGATT------TGTCATCAGCGC-------------------------------------------------------------------G--G---CCTC-AG
droFic1	scf7180000454039:847604-847745 -			TGAAT--------------------------------------CACAGCCTTTAA--------AGTAGAGGGAATAGTTGCTGTGCTG-TAAGTTATTTATCAAAAATCTATATCACAGTGGCTGTTCTTTTTGTACCTAAAGTGCCAAACAT---------------------------CAATGT---TT-T----TGTT-------------------------------TTTCTTTTCG-----TTCG-TATCT---GAC---A
droEle1	scf7180000491201:2013540-2013673 -			----------------------------------------------AGCCTTTAA--------AGTAGAGGGAATAGTTGCTGTGCTG-TAAGTAACT-AAACTATACCTATATCACAGTGGCTGTTCTTTTTGTACCTAAAGTGCCAAACAT---------------------------CAAAGCGGCCAATATT-TGTT-------------------------------TTCATT---T-----------TCCC---GACA-AA
droRho1	scf7180000780066:74080-74209 +			T------------------------------------------CACAGCCTTTAA--------AGTAGAGGGAATAGTTGCTGTGCTG-TAAGTTACT-A-ACTATACCTATATCACAGTGGCTGTTCTTTTTGTACCTAAAGTGCCAAACAT---------------------------CAAAGC---TC-T----AGTT-------------------------------TTATTT---T-----------TCCT---GACA-AA
droBia1	scf7180000302143:3059378-3059501 -			--------------------------------------------ACAGCCTTTAA--------AGTAGAGGGAATAGTTGCTGTGCTG-TAAGTTACC-AAGCTATATCTATATCACAGTGGCTGTTCTTTTTGTACCTAAAGTGCCTGACAT---------------------------CAGACG---TT-T----AGTT------------------------------------C---T-----------CCCT---GACA-AG
droTak1	scf7180000415384:84466-84589 +			--------------------------------------------ATAGCCTTTAA--------AGTAGAGGGAATAGTTGCTGTGCTG-TAAGTTACT-AAGCTATATCTATATCACAGTGGCTGTTCTTTTTGTACCTAAAGTGCCTAACAC---------------------------CAGTCG---T----------T-------------------------------TTAGTT---T-----------ATCT---GACA-AA
droEug1	scf7180000409474:2397252-2397379 +			T------------------------------------------CACAGCCTTTAA--------AGTAGAGGGAATAGTTGCTGTGTTG-TATGCTACT-TAACAATATCTATATCACAGTGGCTGTTCTTTTTGCATCTAAAGTGACTAACAT---------------------------CATTCG---TT-T----TGTT-------------------------------TTTT---GTT--------------T---TATA-TT
dm3	chr2R:15548463-15548597 -	dme-mir-6-1	Known_mirbase	T------------------------------------------CACAGCCTTTAA--------TGTAGAGGGAATAGTTGCTGTGCTG-TAAGTTAAT-ATACCATATCTATATCACAGTGGCTGTTCTTTTTGTACCTAAAGTGCCTAACAT---------------------------CATTAT---T--TAATTTT----------------------------------TTTTT-TTT-----TTGG--C--A---CACG-AA
droSim2	2r:16195737-16195871 -	dsi-mir-6-1	Known_mirbase	T------------------------------------------CACAGCCTTTAA--------AGTAGAGGGAATAGTTGCTGTGCTG-TAAGTTTAT-ATACCGTATCTATATCACAGTGGCTGTTCTTTTTGTACCTAAAG-GC-------------------------ATTTTACATCATTAT---T--TAATTTACT-------------------------------TTTTT---TT-T---T-C------G---CACA-CG
droSec2	scaffold_1:13063198-13063329 -	dse-mir-6-1	Known_mirbase	T------------------------------------------CACAGCCTTTAA--------AGTAGAGGGAATAGTTGCTGTGCTG-TAAGTTAAT-ATACCATATCTATATCACAGTGGCTGTTCTTTTTGTACCTAAAG-GC-------------------------ATTTTACATCATTAT---T--TAATTTACT-------------------------------TTTT---TT--------T------G---CACA-CG
droYak3	2R:13624193-13624324 +	dya-mir-6-1	Known_mirbase	T------------------------------------------CACAGCCTTTAA--------CGTAGAGGGAATAGTTGCTGTGCTG-TAAGTTAAT-AACAAATATCTATATCACAGTGGCTGTTCTTTTTGTACCTAAAGTGCCTAACAT---------------------------CATTAA---T---AATTTGTT-------------------------------GCTT----TT-T---T-T------G---CTCA-CA
droEre2	scaffold_4845:9748716-9748844 -	der-mir-6-1	Known_mirbase	----------------------------------------------AGCCTTTAA--------AGTAGAGGGAATAGTTGCCGTGCTG-TAAGTTAAT-ATATCATATCTATATCACAGTGGCTGTTCTTTTTGTACCTAAAGTGCCTAACAT---------------------------CATCAT---T--T----TGTT----GCC------------------------TTATT----------TTGG--T--G---CACG-AA

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droGri2

GTGACTTCTGTTTGCATTTCCGTTTC-CGATTTGTGGT----TTATAGCCTTTAA--------TGTAAAGAGAATAGATGCTGTGCTG-TATGTTGAA-C-GTATTGTCTATATCACAGTGGCTGTTCTTTTTGTACCAAAAGTGCCGTACAA---------------------------CAAAATGAGT------------AAT----------------------------------GTTATCAACCGC--T--G---CATA-AA	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
...............................................................................................................TATCACAGTGGCTGTTCTTTTT......................................................................................................................................	22	6	2.50	15	10	5
...............................................................................................................TATCACAGTGGCTGTTCTTTT.......................................................................................................................................	21	6	1.83	11	2	9
...............................................................................................................TATCACAGTGGCTGTTCTTT........................................................................................................................................	20	6	0.33	2	0	2

droVir3

GACTTAAAA--------CTATATCGCCC----AGTTATCTGTTTATAGCCTTTAA--------AGTAGAGAGAATAGACGCTGTGCTG-TATGTTTTG-C-GTATGGTCTATATCACAGTGGCTGTTCTTTTTGTACCTGAAGCGCCGTACAA---------------------------CGTTGA---T--T----TCTT----AAATTGTGAAAATTGAATAA---------ATAT---------TT-----GCT---GACAAAT	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells	SRR2096013 Ovary_Strain_9_oxidized	SRR2096014 Ovary_Strain_160_oxidized	SRR2096026 embryo_0-2h from 14 day old Strain 9 mothers	SRR2096038 embryo_0-2h from 14 day old Strain 9 mothers	SRR2096050 embryo_0-2h from 14 day old Strain 160 mothers	SRR2096055 Ovary_Min_43	SRR2096056 Ovary_Min_46	SRR2096057 Ovary_Min_50	SRR2096058 Ovary_Min_98	SRR2096059 Ovary_Min_164	SRR2096060 Ovary_Min_193	SRR2096061 embryo_0-2h from 14 day old Strain 160 mothers	SRR2096072 embryo_0-2h from 15to16 day old dysgenic mothers	SRR2096079 embryo_0-2h from 15to16 day old dysgenic mothers	SRR2096080 embryo_0-2h from 15to16 day old nondysgenic mothers	SRR2096081 embryo_0-2h from 15to16 day old nondysgenic mothers
...............................................................................................................TATCACAGTGGCTGTTCTTTTT......................................................................................................................................	22	3	34949.67	104849	0	0	30	29917	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	14	33	193	3128	2523	3385	2842	2463	4757	2479	4868	3020	2055	2357	2021	14	9	0	6143	2	0	6	23	0	1	1566	1399	10448	8	4	4	1	5	0	6093	4242	4274	2250	2272
....................................................................AGAGAATAGACGCTGTGCTG-TA................................................................................................................................................................................	22	1	8730.00	8730	0	0	0	239	0	0	0	0	0	0	0	0	12	87	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	48	0	25	83	138	354	0	0	4	9	424	1352	926	20	11	9	9	6	7	4	5	8	5	3	0	0	3	64	0	0	0	0	0	207	227	1859	2	3	2	2	1	4	1305	346	346	276	295
...............................................................................................................TATCACAGTGGCTGTTCTTTT.......................................................................................................................................	21	3	5932.67	17798	0	0	7	5463	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	14	18	145	124	356	305	338	606	509	1047	845	599	807	645	3	3	0	1979	1	0	4	0	0	8	216	197	622	0	1	0	0	2	0	370	688	662	600	610
...............................................................................................................TATCACAGTGGCTGTTCTTTTTC.....................................................................................................................................	23	3	3316.00	9948	0	0	1	3200	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	2	7	115	95	335	276	182	402	420	777	641	401	506	444	1	1	0	1877	0	0	2	0	1	0	24	35	34	0	0	0	1	0	1	21	46	56	22	21
....................................................................AGAGAATAGACGCTGTGCTG-T.................................................................................................................................................................................	21	1	1208.00	1208	0	0	0	56	0	0	0	0	0	0	0	0	2	33	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	1	4	10	19	0	0	1	1	55	243	200	25	20	26	33	22	31	22	17	16	14	1	0	0	26	12	0	0	0	0	0	11	10	58	0	1	0	0	0	0	47	59	60	32	38
...............................................................................................................TATCACAGTGGCTGTTCTTTTTGT....................................................................................................................................	24	1	806.00	806	0	0	0	85	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	3	43	42	30	56	26	52	21	51	20	12	12	8	0	0	0	33	0	0	0	0	0	0	14	9	76	1	0	0	0	0	1	72	49	43	19	27
....................................................................AGAGAATAGACGCTGTGCTG-..................................................................................................................................................................................	20	1	697.00	697	0	0	0	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	2	2	8	0	0	1	1	20	200	146	24	17	10	21	7	8	10	1	2	3	0	0	0	7	1	0	0	0	0	0	4	6	54	0	0	0	0	0	0	35	34	25	22	18
...............................................................................................................TATCACAGTGGCTGTTCTTTTTCC....................................................................................................................................	24	3	570.00	1710	0	0	0	451	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	18	20	49	55	19	49	76	180	126	75	90	60	0	0	0	392	0	0	0	0	0	0	6	2	5	0	1	0	0	0	0	7	15	4	5	3
...............................................................................................................TATCACAGTGGCTGTTCTTT........................................................................................................................................	20	3	518.00	1554	0	0	6	361	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	3	5	11	10	15	16	18	36	31	66	66	38	44	39	0	0	0	199	0	0	0	0	0	0	27	33	43	0	0	0	0	0	0	36	92	84	137	137
...............................................................................................................TATCACAGTGGCTGTTCTTTTC......................................................................................................................................	22	3	494.67	1484	0	0	0	1096	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	1	10	13	1	19	18	23	36	16	28	18	0	0	0	151	0	0	1	0	0	0	4	6	9	0	0	0	1	0	1	5	8	9	0	6
...............................................................................................................TATCACAGTGGCTGTTCTTTTTG.....................................................................................................................................	23	2	359.00	718	0	0	0	167	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	15	11	15	24	7	27	15	35	22	18	15	12	0	0	0	39	0	0	0	0	0	0	15	13	98	2	0	0	0	0	0	66	42	32	8	19
.................................................................TAGAGAGAATAGACGCTGTGCT....................................................................................................................................................................................	22	1	292.00	292	0	0	0	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	2	0	0	0	0	5	31	25	19	16	13	25	9	15	5	11	10	5	0	0	0	6	2	0	0	0	0	0	1	3	13	0	0	0	0	0	0	11	24	26	2	3
...............................................................................................................TATCACAGTGGCTGTTCTTTTTA.....................................................................................................................................	23	3	179.33	538	0	0	1	64	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	7	10	22	15	17	25	10	13	13	4	7	6	0	0	0	22	0	0	0	0	0	0	14	19	112	0	0	0	0	0	0	54	35	25	18	24
...............................................................................................................TATCACAGTGGCTGTTCTTTTTGTC...................................................................................................................................	25	1	178.00	178	0	0	0	13	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	16	5	16	23	8	17	10	18	7	5	7	8	0	1	0	9	0	0	0	0	0	0	3	1	2	0	0	0	0	0	0	1	5	3	0	0
....................................................................AGAGAATAGACGCTGTGCTG-TAA...............................................................................................................................................................................	23	1	176.00	176	0	0	0	2	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	2	4	18	0	0	1	0	9	25	22	1	4	1	4	1	1	2	0	0	0	0	0	0	2	1	0	0	0	0	0	1	1	26	0	0	0	0	0	0	22	2	9	6	6
....................................................................AGAGAATAGACGCTGTGC.....................................................................................................................................................................................	18	1	150.00	150	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	19	46	47	4	1	0	2	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	8	0	0	0	0	0	0	7	2	1	0	3
...............................................................................................................TATCACAGTGGCTGTTCTTTTTCCC...................................................................................................................................	25	3	126.67	380	0	0	0	27	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	8	5	12	12	4	4	29	49	53	27	31	19	0	0	0	92	0	0	0	0	0	0	0	0	5	0	0	1	0	0	1	1	0	0	0	0
....................................................................AGAGAATAGACGCTGTGCTG-TAAA..............................................................................................................................................................................	24	1	78.00	78	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	2	1	0	0	0	0	11	24	6	1	2	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	1	12	0	0	0	0	0	0	6	2	5	2	1
...............................................................................................................TATCACAGTGGCTGTTCTT.........................................................................................................................................	19	3	50.33	151	0	0	1	18	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	2	2	1	3	5	6	4	10	9	9	4	0	1	0	17	0	0	1	0	0	0	1	2	6	0	0	0	0	0	0	6	8	2	21	10
...............................................................................................................TATCACAGTGGCTGTTCTTTC.......................................................................................................................................	21	3	35.33	106	0	0	0	98	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	5	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................TCACAGTGGCTGTTCTTTTTGT....................................................................................................................................	22	1	33.00	33	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	2	3	1	1	0	3	1	1	0	0	0	0	3	0	0	0	0	0	0	2	2	3	0	0	0	0	0	0	2	0	4	0	0
...............................................................................................................TATCACAGTGGCTGTTCTTTTTAA....................................................................................................................................	24	3	29.33	88	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	3	2	4	4	1	2	3	1	0	2	0	0	0	0	0	0	0	0	0	0	5	2	19	0	0	0	0	0	1	14	13	3	3	4
...............................................................................................................TATCACAGTGGCTGTTCTTTTCC.....................................................................................................................................	23	3	28.33	85	0	0	1	44	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	1	1	2	0	3	6	2	3	3	0	0	0	13	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	1	1	0	0
...............................................................................................................TATCACAGTGGCTGTTCTTTTA......................................................................................................................................	22	3	26.00	78	0	0	0	14	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	3	1	2	0	5	1	0	1	2	0	0	0	0	0	0	0	0	0	0	4	2	13	0	0	0	0	0	0	6	7	9	2	4
....................................................................AGAGAATAGACGCTGTGCTG-TC................................................................................................................................................................................	22	1	25.00	25	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	11	0	0	0	0	0	0	11	0	0	0	0
...............................................................................................................TATCACAGTGGCTGTTCT..........................................................................................................................................	18	3	21.00	63	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	4	2	1	1	2	2	0	0	0	2	0	0	0	0	0	0	1	0	13	0	0	0	0	0	0	10	2	2	6	8
......................................................................AGAATAGACGCTGTGCTG-TATG..............................................................................................................................................................................	22	1	20.00	20	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	5	1	0	0	0	1	2	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	3	0	1	0	1
...............................................................................................................TATCACAGTGGCTGTTCTTC........................................................................................................................................	20	3	17.00	51	0	0	0	50	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................TATCACAGTGGCTGTTCTTTTG......................................................................................................................................	22	3	16.33	49	0	0	0	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	2	0	2	2	0	1	0	0	2	1	0	0	0	6	0	0	0	0	0	0	0	1	3	0	0	0	0	0	0	2	10	0	5	2
....................................................................AGAGAATAGACGCTGTGCTG-C.................................................................................................................................................................................	21	1	16.00	16	0	0	0	11	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................GAGAATAGACGCTGTGCTG-TA................................................................................................................................................................................	21	1	14.00	14	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	1	0	0	1	2
....................................................................AGAGAATAGACGCTGTGCTG-TAT...............................................................................................................................................................................	23	1	14.00	14	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	2	0	0	0	0	0	1	0	0	0	0	0	1	0	1	1	0	1	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	1	0	0
....................................................................AGAGAATAGACGCTGTGCT....................................................................................................................................................................................	19	1	13.00	13	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	1	0	1	0	1	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	3	0	0	0	0	0	0	1	1	0	0	1
....................................................................AGAGAATAGACGCTGTGCTG-TAAAA.............................................................................................................................................................................	25	1	13.00	13	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	2	0	0	1	3
.................................................................TAGAGAGAATAGACGCTGTGC.....................................................................................................................................................................................	21	1	12.00	12	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	1	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	2	0	1	0
................................................................................................................ATCACAGTGGCTGTTCTTTTT......................................................................................................................................	21	3	11.33	34	0	0	3	21	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	1	0	1	0	1	0	0	0	0	0	2	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	2	0	0	0	0
..................................................................AGAGAGAATAGACGCTGTGCTG-..................................................................................................................................................................................	22	1	11.00	11	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	3	1	0	0	1	2	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................TATCACAGTGGCTGTTCTTTTTGC....................................................................................................................................	24	2	9.50	19	0	0	0	18	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
....................................................................AGAGAATAGACGCTGTGCTG-TT................................................................................................................................................................................	22	1	9.00	9	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	1	2	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0
...............................................................................................................TATCACAGTGGCTGTTCTTTTTCA....................................................................................................................................	24	3	9.00	27	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	2	1	1	1	2	0	3	2	0	2	0	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	1	0
....................................................................AGAGAATAGACGCTGTGCTG-TAG...............................................................................................................................................................................	23	1	8.00	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	2	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	1
..................................................................................................................CACAGTGGCTGTTCTTTTTGTACC.................................................................................................................................	24	1	8.00	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	2
.................................................................................................................TCACAGTGGCTGTTCTTTTTGTC...................................................................................................................................	23	1	8.00	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	1	1	0	1	0	1	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................ATATCACAGTGGCTGTTCTTTTT......................................................................................................................................	23	3	7.67	23	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	3	1	2	1	3	1	2	1	0	0	3	0	1	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0
.................................................................TAGAGAGAATAGACGCTGTGCTC-..................................................................................................................................................................................	23	1	7.00	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	2	0	1	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................ACAGTGGCTGTTCTTTTT......................................................................................................................................	18	3	7.00	21	0	0	0	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	1	0	0	0	0	0	1	0	0	0	0	0	1	1	4	0	0	0	0	0	0	3	1	0	1	0
...............................................................................................................TATCACAGTGGCTGTTCTTTTTGA....................................................................................................................................	24	2	6.50	13	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	4	0	0	0	0	0	0	0	3	0	1	0
.....................................................................GAGAATAGACGCTGTGCTG-T.................................................................................................................................................................................	20	1	6.00	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	1	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................TATCACAGTGGCTGTTCTTTTTGTCA..................................................................................................................................	26	1	6.00	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................TATCACAGTGGCTGTTCTTTTCCC....................................................................................................................................	24	3	6.00	18	0	0	0	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	1	1	1	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0
...............................................................................................................TATCACAGTGGCTGTTC...........................................................................................................................................	17	3	5.67	17	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	2	4	0	0	0	0	0	0	3	0	2	2	2
................................................................................................................ATCACAGTGGCTGTTCTTTTTG.....................................................................................................................................	22	2	5.50	11	0	0	0	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	1	0	0	0	0
...............................................................................................................TATCACAGTGGCTGTTCTTTTAA.....................................................................................................................................	23	3	5.33	16	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	3	1	1	0	0	0	0	0	1	0	2	0	2	1
.............................................................................................................TATATCACAGTGGCTGTTCTTT........................................................................................................................................	22	2	5.00	10	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	1	1	2	0	0
................................................................................................................ATCACAGTGGCTGTTCTTTTTGT....................................................................................................................................	23	1	5.00	5	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	1	0	0	0	1
....................................................................AGAGAATAGACGCTGTGCTG-G.................................................................................................................................................................................	21	1	5.00	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................TCACAGTGGCTGTTCTTTTT......................................................................................................................................	20	3	5.00	15	0	0	0	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	1	1	1	0	2
...............................................................................................................TATCACAGTGGCTGTTCTTTTTGTT...................................................................................................................................	25	2	4.50	9	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	2	0	0	2	1	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................TATCACAGTGGCTGTTCTTTTAAA....................................................................................................................................	24	3	4.00	12	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	3	0	0	0	0	0	0	1	1	0	1	2	1
.......................................................................GAATAGACGCTGTGCTG-TA................................................................................................................................................................................	19	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	1	0	0	0	0
...........................................................................................TGTTTTG-C-GTATGGTCTA............................................................................................................................................................	18	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	1	0	0	0	0
...............................................................................................................TATCACAGTGGCTGTTCTTTTTGTCT..................................................................................................................................	26	2	4.00	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	1	1	0	1	1	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................TATCACAGTGGCTGTTCTTTTTAC....................................................................................................................................	24	3	3.67	11	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	1	1	0	0	0	1	2	0	0	1	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................ATCACAGTGGCTGTTCTTTT.......................................................................................................................................	20	3	3.00	9	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1
..................................................................AGAGAGAATAGACGCTGTGCT....................................................................................................................................................................................	21	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0
.................................................................TAGAGAGAATAGACGCTGTGCG....................................................................................................................................................................................	22	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
....................................................................AGAGAATAGACGCTGTGCTG-TATG..............................................................................................................................................................................	24	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0
......................................................................AGAATAGACGCTGTGCTG-TA................................................................................................................................................................................	20	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................ATCACAGTGGCTGTTCTTTTTC.....................................................................................................................................	22	3	3.00	9	0	0	0	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................AGAGAATAGACGCTGTGCTG-TG................................................................................................................................................................................	22	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0

droMoj3

TGTATATAT--------ATTTATTTCTC---TAGTGTT----TTTTCGCCTTTAA--------AGTAGAGAGAATAGATGCTGTG------AGTATAT-CTGTTGCATTTATATCACAGTGGCTGTTCTTTTTGTACCTAAATGGCCAGACAG---------------------------CA-------------------------------------------------------------------------------------	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
...............................................................................................................TATCACAGTGGCTGTTCTTTTT......................................................................................................................................	22	3	175659.67	526979	30	1	0	0	526946	2
...............................................................................................................TATCACAGTGGCTGTTCTTTT.......................................................................................................................................	21	3	71420.67	214262	14	1	0	0	214242	5
...............................................................................................................TATCACAGTGGCTGTTCTTTTTC.....................................................................................................................................	23	3	9565.33	28696	6	0	0	0	28690	0
...............................................................................................................TATCACAGTGGCTGTTCTTT........................................................................................................................................	20	3	5461.67	16385	3	0	0	0	16380	2
...............................................................................................................TATCACAGTGGCTGTTCTTTTC......................................................................................................................................	22	3	4979.00	14937	1	0	0	0	14936	0
....................................................................AGAGAATAGATGCTGTG------AGTAT...........................................................................................................................................................................	22	1	1583.00	1583	1	355	0	0	1226	1
...............................................................................................................TATCACAGTGGCTGTTCTTTC.......................................................................................................................................	21	3	1153.67	3461	0	0	0	0	3461	0
...............................................................................................................TATCACAGTGGCTGTTCTTTTTCC....................................................................................................................................	24	3	749.33	2248	0	0	0	0	2248	0
...............................................................................................................TATCACAGTGGCTGTTCTTTTTG.....................................................................................................................................	23	2	623.50	1247	1	0	0	0	1244	2
...............................................................................................................TATCACAGTGGCTGTTCTTC........................................................................................................................................	20	3	612.00	1836	0	0	0	0	1836	0
................................................................................................................ATCACAGTGGCTGTTCTTTTT......................................................................................................................................	21	3	393.67	1181	2	0	0	0	1179	0
...............................................................................................................TATCACAGTGGCTGTTCTT.........................................................................................................................................	19	3	276.67	830	0	1	0	0	828	1
...............................................................................................................TATCACAGTGGCTGTTCTTTTTA.....................................................................................................................................	23	3	230.33	691	0	0	0	0	691	0
...............................................................................................................TATCACAGTGGCTGTTCTTTTTGT....................................................................................................................................	24	1	191.00	191	0	0	0	0	191	0
....................................................................AGAGAATAGATGCTGTG------AGTATA..........................................................................................................................................................................	23	1	164.00	164	0	12	0	0	152	0
....................................................................AGAGAATAGATGCTGTG------AGTAC...........................................................................................................................................................................	22	1	147.00	147	0	2	0	0	145	0
................................................................................................................ATCACAGTGGCTGTTCTTTT.......................................................................................................................................	20	3	132.33	397	1	0	0	0	396	0
....................................................................AGAGAATAGATGCTGTG------AGTA............................................................................................................................................................................	21	1	126.00	126	0	4	0	0	122	0
................................................................................................................ATCACAGTGGCTGTTCTTTTTG.....................................................................................................................................	22	2	95.50	191	0	0	0	0	191	0
...............................................................................................................TATCACAGTGGCTGTTCTTTTA......................................................................................................................................	22	3	89.67	269	0	0	0	0	269	0
.................................................................................................................TCACAGTGGCTGTTCTTTTT......................................................................................................................................	20	3	89.67	269	0	0	0	0	269	0
...............................................................................................................TATCACAGTGGCTGTTCTTTTCC.....................................................................................................................................	23	3	68.67	206	0	0	0	0	206	0
..................................................................................................................CACAGTGGCTGTTCTTTTT......................................................................................................................................	19	3	65.33	196	0	0	0	0	196	0
...............................................................................................................TATCACAGTGGCTGTTCTTTTTCCC...................................................................................................................................	25	3	53.67	161	0	0	0	0	161	0
...................................................................................................................ACAGTGGCTGTTCTTTTT......................................................................................................................................	18	3	47.67	143	0	0	0	0	143	0
...............................................................................................................TATCACAGTGGCTGTTCTTTG.......................................................................................................................................	21	3	46.67	140	0	0	0	0	140	0
....................................................................AGAGAATAGATGCTGTG------AGT.............................................................................................................................................................................	20	1	36.00	36	0	4	0	0	32	0
...............................................................................................................TATCACAGTGGCTGTTCTTTTTGC....................................................................................................................................	24	2	34.50	69	0	0	0	0	69	0
.................................................................................................................TCACAGTGGCTGTTCTTTTTGT....................................................................................................................................	22	1	33.00	33	0	0	0	0	33	0
..............................................................................................................ATATCACAGTGGCTGTTCTTT........................................................................................................................................	21	3	31.33	94	0	0	0	0	94	0
.................................................................................................................TCACAGTGGCTGTTCTTTT.......................................................................................................................................	19	3	31.33	94	0	0	0	0	94	0
...............................................................................................................TATCACAGTGGCTGTTCTTTTG......................................................................................................................................	22	3	28.67	86	0	0	0	0	86	0
..................................................................................................................CACAGTGGCTGTTCTTTT.......................................................................................................................................	18	3	28.33	85	0	0	0	0	85	0
...............................................................................................................TATCACAGTGGCTGTTCT..........................................................................................................................................	18	3	26.33	79	0	0	0	0	79	0
....................................................................AGAGAATAGATGCTGTG------AGC.............................................................................................................................................................................	20	1	18.00	18	0	0	0	0	18	0
...............................................................................................................TATCACAGTGGCTGTTCTTTTTGTC...................................................................................................................................	25	1	18.00	18	0	0	0	0	18	0
....................................................................AGAGAATAGATGCTGTG------AGTATT..........................................................................................................................................................................	23	1	17.00	17	0	4	0	0	13	0
................................................................................................................ATCACAGTGGCTGTTCTTTTTC.....................................................................................................................................	22	3	16.00	48	0	0	0	0	48	0
...............................................................................................................TATCACAGTGGCTGTTCTC.........................................................................................................................................	19	3	14.67	44	0	0	0	0	44	0
................................................................................................................ATCACAGTGGCTGTTCTTT........................................................................................................................................	19	3	11.00	33	0	0	0	0	33	0
.....................................................................GAGAATAGATGCTGTG------AGTAT...........................................................................................................................................................................	21	1	11.00	11	0	1	0	0	10	0
.................................................................................................................TCACAGTGGCTGTTCTTTTTG.....................................................................................................................................	21	2	10.50	21	0	0	0	0	21	0
..............................................................................................................ATATCACAGTGGCTGTTCTTTT.......................................................................................................................................	22	3	10.00	30	0	0	0	0	30	0
..................................................................................................................CACAGTGGCTGTTCTTTTTC.....................................................................................................................................	20	3	9.33	28	0	0	0	0	28	0
.................................................................................................................TCACAGTGGCTGTTCTTTTTGC....................................................................................................................................	22	2	9.00	18	0	0	0	0	18	0

droWil2

GTTTT----------------------C---AAGTGGTTTTCAACCAGCCTTTAA--------AGTAGAGAGAATAGTTGCTGTGTTT-TATGCCCTT-T-TC-AATTTCATATCACAGTGGCTGTTCTTTTTGTGCCTAAAGTGCCCCACAA---------------------------CAACAA---C--A----AC---AAC-ACATTCAAAATATTAACAAAAATATTATTT---AG--------T------G---AAGT-GT	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
...............................................................................................................TATCACAGTGGCTGTTCTTTTT......................................................................................................................................	22	3	35155.67	105467	0	1807	0	103655	5
...............................................................................................................TATCACAGTGGCTGTTCTTTT.......................................................................................................................................	21	3	8217.00	24651	0	344	1	24304	2
...............................................................................................................TATCACAGTGGCTGTTCTTT........................................................................................................................................	20	3	1168.67	3506	0	59	5	3441	1
...............................................................................................................TATCACAGTGGCTGTTCTTTTTA.....................................................................................................................................	23	3	1099.33	3298	0	10	0	3288	0
....................................................................AGAGAATAGTTGCTGTGTTT-TATG..............................................................................................................................................................................	24	1	379.00	379	0	0	0	379	0
...............................................................................................................TATCACAGTGGCTGTTCTT.........................................................................................................................................	19	3	320.00	960	0	6	0	950	4
...............................................................................................................TATCACAGTGGCTGTTCTTTTTAA....................................................................................................................................	24	3	217.00	651	0	5	0	646	0
...............................................................................................................TATCACAGTGGCTGTTCTTTTA......................................................................................................................................	22	3	189.67	569	0	4	0	565	0
...............................................................................................................TATCACAGTGGCTGTTCT..........................................................................................................................................	18	3	128.33	385	0	3	0	382	0
...............................................................................................................TATCACAGTGGCTGTTCTTTTTG.....................................................................................................................................	23	2	83.50	167	0	6	0	161	0
................................................................................................................ATCACAGTGGCTGTTCTTTTT......................................................................................................................................	21	3	70.33	211	0	143	0	68	0
...............................................................................................................TATCACAGTGGCTGTTCTTTTTAAA...................................................................................................................................	25	3	46.00	138	0	0	0	138	0
...................................................................................................................ACAGTGGCTGTTCTTTTT......................................................................................................................................	18	3	45.00	135	0	1	0	134	0
....................................................................AGAGAATAGTTGCTGTGTTT-T.................................................................................................................................................................................	21	1	45.00	45	0	0	0	45	0
...............................................................................................................TATCACAGTGGCTGTTCTTTTAA.....................................................................................................................................	23	3	41.67	125	0	0	0	125	0
...............................................................................................................TATCACAGTGGCTGTTCTTTTC......................................................................................................................................	22	3	40.33	121	0	1	0	120	0
...............................................................................................................TATCACAGTGGCTGTTCTTTTTC.....................................................................................................................................	23	3	32.33	97	0	0	0	97	0
....................................................................AGAGAATAGTTGCTGTGTTT-TATGA.............................................................................................................................................................................	25	1	21.00	21	0	0	0	21	0
...............................................................................................................TATCACAGTGGCTGTTCTTTTG......................................................................................................................................	22	3	18.67	56	0	0	0	56	0
................................................................................................................ATCACAGTGGCTGTTCTTTT.......................................................................................................................................	20	3	16.00	48	0	31	0	17	0
....................................................................AGAGAATAGTTGCTGTGTTT-TAT...............................................................................................................................................................................	23	1	16.00	16	0	0	0	16	0
...............................................................................................................TATCACAGTGGCTGTTCTTTTTGT....................................................................................................................................	24	1	12.00	12	0	5	0	7	0
....................................................................AGAGAATAGTTGCTGTGTTT-TA................................................................................................................................................................................	22	1	11.00	11	0	0	0	11	0
.................................................................................................................TCACAGTGGCTGTTCTTTTT......................................................................................................................................	20	3	10.33	31	0	12	0	19	0
...............................................................................................................TATCACAGTGGCTGTTCTTTA.......................................................................................................................................	21	3	9.33	28	0	1	0	27	0
..............................................................................................................ATATCACAGTGGCTGTTCTTTT.......................................................................................................................................	22	3	8.67	26	0	0	0	26	0
...............................................................................................................TATCACAGTGGCTGTTCTTTTAAA....................................................................................................................................	24	3	7.33	22	0	0	0	22	0
....................................................................AGAGAATAGTTGCTGTGTTT-TATGAA............................................................................................................................................................................	26	1	7.00	7	0	0	0	7	0
..................................................................................................................CACAGTGGCTGTTCTTTTT......................................................................................................................................	19	3	6.00	18	0	0	0	18	0
..............................................................................................................ATATCACAGTGGCTGTTCTTT........................................................................................................................................	21	3	4.67	14	0	0	0	14	0
...............................................................................................................TATCACAGTGGCTGTTCTTTC.......................................................................................................................................	21	3	4.33	13	0	0	0	13	0
....................................................................AGAGAATAGTTGCTGTGTTT-..................................................................................................................................................................................	20	1	4.00	4	0	0	0	4	0
....................................................................AGAGAATAGTTGCTGTGTTT-TATA..............................................................................................................................................................................	24	1	4.00	4	0	0	0	4	0
...............................................................................................................TATCACAGTGGCTGTTCTTTTTCC....................................................................................................................................	24	3	3.67	11	0	0	0	11	0
...............................................................................................................TATCACAGTGGCTGTTCTTTTTGA....................................................................................................................................	24	2	3.50	7	0	0	0	7	0
...............................................................................................................TATCACAGTGGCTGTTCTTTAA......................................................................................................................................	22	4	3.25	13	0	0	0	13	0
................................................................................................................ATCACAGTGGCTGTTCTTT........................................................................................................................................	19	3	2.67	8	0	7	0	1	0
...................................................................................................................ACAGTGGCTGTTCTTTTTA.....................................................................................................................................	19	3	2.67	8	0	0	0	8	0
................................................................................................................ATCACAGTGGCTGTTCTTTTTG.....................................................................................................................................	22	2	2.50	5	0	0	0	5	0
........................................................................AATAGTTGCTGTGTTT-TATG..............................................................................................................................................................................	20	1	2.00	2	0	0	0	2	0
.................................................................................................................TCACAGTGGCTGTTCTTTT.......................................................................................................................................	19	3	2.00	6	0	0	0	6	0
.....................................................................GAGAATAGTTGCTGTGTTT-TATG..............................................................................................................................................................................	23	1	2.00	2	0	0	0	2	0
..................................................................................................................CACAGTGGCTGTTCTTTT.......................................................................................................................................	18	3	1.67	5	0	0	0	5	0
..............................................................................................................ATATCACAGTGGCTGTTCTTTTT......................................................................................................................................	23	3	1.33	4	0	2	0	2	0
..............................................................................................................ATATCACAGTGGCTGTTCTT.........................................................................................................................................	20	3	1.33	4	0	0	0	4	0
.................................................................................................................TCACAGTGGCTGTTCTTTTTAA....................................................................................................................................	22	3	1.33	4	0	0	0	4	0
...............................................................................................................TATCACAGTGGCTGTTCTTTTTAC....................................................................................................................................	24	3	1.00	3	0	1	0	2	0
.................................................................................................................TCACAGTGGCTGTTCTTTTTG.....................................................................................................................................	21	2	1.00	2	0	0	0	2	0
....................................................................AGAGAATAGTTGCTGTGTTT-TATT..............................................................................................................................................................................	24	1	1.00	1	0	0	0	1	0
....................................................................AGAGAATAGTTGCTGTGTTT-TATGC.............................................................................................................................................................................	25	1	1.00	1	0	0	0	1	0
................................................................................................................ATCACAGTGGCTGTTCTTTTTGT....................................................................................................................................	23	1	1.00	1	0	0	0	1	0
.................................................................................................................TCACAGTGGCTGTTCTTTTTGT....................................................................................................................................	22	1	1.00	1	0	1	0	0	0
...............................................................................................................TATCACAGTGGCTGTTCTTTG.......................................................................................................................................	21	3	1.00	3	0	0	0	3	0
.................................................................................................................TCACAGTGGCTGTTCTTTTTGTG...................................................................................................................................	23	1	1.00	1	0	0	0	1	0
...............................................................................................................TATCACAGTGGCTGTTCTTTTTAAC...................................................................................................................................	25	3	1.00	3	0	0	0	3	0
....................................................................AGAGAATAGTTGCTGTGTTT-TATGAAA...........................................................................................................................................................................	27	1	1.00	1	0	0	0	1	0
...............................................................................................................TATCACAGTGGCTGTTCTTTTGA.....................................................................................................................................	23	3	0.67	2	0	0	0	2	0
...................................................................................................................ACAGTGGCTGTTCTTTTA......................................................................................................................................	18	3	0.67	2	0	0	0	2	0
...............................................................................................................TATCACAGTGGCTGTTCTTTTCC.....................................................................................................................................	23	3	0.67	2	0	0	0	2	0

dp5

----------------------------------------------AGCCTTTGA--------AGTAGAGAGAATAGTTGCTGTGCTA-TATGTCCTT-CGAC--TCTATATATCACAGTGGCTGTTCTTTTTGTACCTAAAGTGCCAAACAGCCAAG------GAATCGCGTTG------------------------TGCAGT----------------------------------GCTTCCAGTT-----ACT---GACA-AA	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
...............................................................................................................TATCACAGTGGCTGTTCTTTTT......................................................................................................................................	22	3	38201.33	114604	0	6815	107701	78	3	0	7	0	0	0
...............................................................................................................TATCACAGTGGCTGTTCTTTT.......................................................................................................................................	21	3	6091.00	18273	0	1237	17000	29	2	0	5	0	0	0
...............................................................................................................TATCACAGTGGCTGTTCTTTTC......................................................................................................................................	22	3	1760.00	5280	0	4	5272	4	0	0	0	0	0	0
....................................................................AGAGAATAGTTGCTGTGCTA-TA................................................................................................................................................................................	22	1	867.00	867	0	5	123	0	739	0	0	0	0	0
....................................................................AGAGAATAGTTGCTGTGCTA-T.................................................................................................................................................................................	21	1	486.00	486	0	10	214	0	262	0	0	0	0	0
...............................................................................................................TATCACAGTGGCTGTTCTTT........................................................................................................................................	20	3	403.00	1209	0	134	1074	1	0	0	0	0	0	0
...............................................................................................................TATCACAGTGGCTGTTCTTTTTG.....................................................................................................................................	23	2	249.00	498	0	79	419	0	0	0	0	0	0	0
...............................................................................................................TATCACAGTGGCTGTTCTTTTTGT....................................................................................................................................	24	1	242.00	242	0	23	219	0	0	0	0	0	0	0
................................................................................................................ATCACAGTGGCTGTTCTTTTT......................................................................................................................................	21	3	194.00	582	0	505	77	0	0	0	0	0	0	0
...............................................................................................................TATCACAGTGGCTGTTCTTTC.......................................................................................................................................	21	3	169.33	508	0	2	506	0	0	0	0	0	0	0
...............................................................................................................TATCACAGTGGCTGTTCTTTTTC.....................................................................................................................................	23	3	159.00	477	0	12	464	1	0	0	0	0	0	0
...............................................................................................................TATCACAGTGGCTGTTCTTTTTA.....................................................................................................................................	23	3	100.00	300	0	22	277	0	0	0	1	0	0	0
....................................................................AGAGAATAGTTGCTGTGCTA-C.................................................................................................................................................................................	21	1	70.00	70	0	0	70	0	0	0	0	0	0	0
...............................................................................................................TATCACAGTGGCTGTTCTTC........................................................................................................................................	20	3	62.00	186	0	0	184	2	0	0	0	0	0	0
....................................................................AGAGAATAGTTGCTGTGCTA-TAT...............................................................................................................................................................................	23	1	51.00	51	0	0	3	0	48	0	0	0	0	0
....................................................................AGAGAATAGTTGCTGTGCTA-..................................................................................................................................................................................	20	1	50.00	50	0	1	23	0	26	0	0	0	0	0
................................................................................................................ATCACAGTGGCTGTTCTTTT.......................................................................................................................................	20	3	40.00	120	0	106	14	0	0	0	0	0	0	0
..............................................................................................................ATATCACAGTGGCTGTTCTTTT.......................................................................................................................................	22	3	30.33	91	0	7	84	0	0	0	0	0	0	0
...............................................................................................................TATCACAGTGGCTGTTCTT.........................................................................................................................................	19	3	27.67	83	0	24	59	0	0	0	0	0	0	0
...............................................................................................................TATCACAGTGGCTGTTCTTTTTGC....................................................................................................................................	24	2	26.50	53	0	0	53	0	0	0	0	0	0	0
...............................................................................................................TATCACAGTGGCTGTTCTTTTA......................................................................................................................................	22	3	24.67	74	0	6	68	0	0	0	0	0	0	0
.....................................................................GAGAATAGTTGCTGTGCTA-TAT...............................................................................................................................................................................	22	1	18.00	18	0	1	1	0	16	0	0	0	0	0
.................................................................................................................TCACAGTGGCTGTTCTTTTT......................................................................................................................................	20	3	17.00	51	0	32	19	0	0	0	0	0	0	0
....................................................................AGAGAATAGTTGCTGTGCTA-TT................................................................................................................................................................................	22	1	14.00	14	0	0	1	0	13	0	0	0	0	0
..............................................................................................................ATATCACAGTGGCTGTTCTTTTT......................................................................................................................................	23	3	13.67	41	0	8	33	0	0	0	0	0	0	0
.....................................................................GAGAATAGTTGCTGTGCTA-T.................................................................................................................................................................................	20	1	13.00	13	0	1	5	0	7	0	0	0	0	0
.................................................................................................................TCACAGTGGCTGTTCTTTTTGT....................................................................................................................................	22	1	12.00	12	0	1	11	0	0	0	0	0	0	0
...............................................................................................................TATCACAGTGGCTGTTCTTTTTCC....................................................................................................................................	24	3	10.67	32	0	6	26	0	0	0	0	0	0	0
...............................................................................................................TATCACAGTGGCTGTTCTTTTG......................................................................................................................................	22	3	10.33	31	0	9	22	0	0	0	0	0	0	0
................................................................................................................ATCACAGTGGCTGTTCTTT........................................................................................................................................	19	3	8.33	25	0	22	3	0	0	0	0	0	0	0
.....................................................................GAGAATAGTTGCTGTGCTA-TA................................................................................................................................................................................	21	1	8.00	8	0	0	2	0	6	0	0	0	0	0
...............................................................................................................TATCACAGTGGCTGTTCTTTG.......................................................................................................................................	21	3	8.00	24	0	1	23	0	0	0	0	0	0	0
..................................................................................................................CACAGTGGCTGTTCTTTTT......................................................................................................................................	19	3	7.67	23	0	10	13	0	0	0	0	0	0	0
...............................................................................................................TATCACAGTGGCTGTTCT..........................................................................................................................................	18	3	7.00	21	0	8	13	0	0	0	0	0	0	0
....................................................................AGAGAATAGTTGCTGTGCTA-TC................................................................................................................................................................................	22	1	7.00	7	0	0	1	0	6	0	0	0	0	0
..............................................................................................................ATATCACAGTGGCTGTTCTTT........................................................................................................................................	21	3	5.33	16	0	0	16	0	0	0	0	0	0	0
...................................................................................................................ACAGTGGCTGTTCTTTTT......................................................................................................................................	18	3	5.00	15	0	3	12	0	0	0	0	0	0	0
...............................................................................................................TATCACAGTGGCTGTTCTTTTTGA....................................................................................................................................	24	2	4.50	9	0	0	9	0	0	0	0	0	0	0
....................................................................AGAGAATAGTTGCTGTGCTA-TAAA..............................................................................................................................................................................	24	1	4.00	4	0	0	1	0	3	0	0	0	0	0
...............................................................................................................TATCACAGTGGCTGTTCTTTTTAA....................................................................................................................................	24	3	4.00	12	0	2	10	0	0	0	0	0	0	0
................................................................................................................ATCACAGTGGCTGTTCTTTTTG.....................................................................................................................................	22	2	4.00	8	0	7	1	0	0	0	0	0	0	0
...............................................................................................................TATCACAGTGGCTGTTCTTTTTGTA...................................................................................................................................	25	1	3.00	3	0	0	3	0	0	0	0	0	0	0
...............................................................................................................TATCACAGTGGCTGTTCTTTTCC.....................................................................................................................................	23	3	3.00	9	0	1	8	0	0	0	0	0	0	0
....................................................................AGAGAATAGTTGCTGTGCTA-TAAAA.............................................................................................................................................................................	25	1	3.00	3	0	0	0	0	3	0	0	0	0	0
....................................................................AGAGAATAGTTGCTGTGC.....................................................................................................................................................................................	18	1	3.00	3	0	0	3	0	0	0	0	0	0	0
....................................................................AGAGAATAGTTGCTGTGCTA-TAA...............................................................................................................................................................................	23	1	3.00	3	0	0	2	0	1	0	0	0	0	0
................................................................................................................ATCACAGTGGCTGTTCTTTTTGT....................................................................................................................................	23	1	3.00	3	0	2	1	0	0	0	0	0	0	0
...............................................................................................................TATCACAGTGGCTGTTCTTTTAA.....................................................................................................................................	23	3	2.00	6	0	2	3	0	0	0	1	0	0	0
....................................................................AGAGAATAGTTGCTGTGCTA-TAC...............................................................................................................................................................................	23	1	2.00	2	0	0	1	0	1	0	0	0	0	0
....................................................................AGAGAATAGTTGCTGTGCTA-TG................................................................................................................................................................................	22	1	2.00	2	0	0	1	0	1	0	0	0	0	0
................................................................................................................ATCACAGTGGCTGTTCTTTTC......................................................................................................................................	21	3	2.00	6	0	1	5	0	0	0	0	0	0	0
....................................................................AGAGAATAGTTGCTGTGCT....................................................................................................................................................................................	19	1	2.00	2	0	0	1	0	1	0	0	0	0	0
...............................................................................................................TATCACAGTGGCTGTTCTTTTTGTC...................................................................................................................................	25	1	2.00	2	0	0	2	0	0	0	0	0	0	0
...............................................................................................................TATCACAGTGGCTGTTCTC.........................................................................................................................................	19	3	1.67	5	0	0	5	0	0	0	0	0	0	0
................................................................................................................ATCACAGTGGCTGTTCTT.........................................................................................................................................	18	3	1.67	5	0	5	0	0	0	0	0	0	0	0
.................................................................................................................TCACAGTGGCTGTTCTTTTTG.....................................................................................................................................	21	2	1.50	3	0	1	2	0	0	0	0	0	0	0
................................................................................................................ATCACAGTGGCTGTTCTTTTTC.....................................................................................................................................	22	3	1.33	4	0	3	1	0	0	0	0	0	0	0
...............................................................................................................TATCACAGTGGCTGTTCTTTCC......................................................................................................................................	22	3	1.33	4	0	0	4	0	0	0	0	0	0	0
...............................................................................................................TATCACAGTGGCTGTTCTTTTTCCC...................................................................................................................................	25	3	1.33	4	0	0	4	0	0	0	0	0	0	0

droPer2

----------------------------------------------AGCCTTTGA--------AGTAGAGAGAATAGTTGCTGTGCTA-TATGTCCTT-CGAC--TCTATATATCACAGTGGCTGTTCTTTTTGTACCTAAAGTGCCAAACAGCCAAG------GAATCGCGTTG------------------------TGCAGT----------------------------------GCTTCCAGTT-----ACT---CACA-AA	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
...............................................................................................................TATCACAGTGGCTGTTCTTTTT......................................................................................................................................	22	3	146.00	438	9	413	0	0	1	15
....................................................................AGAGAATAGTTGCTGTGCTA-TA................................................................................................................................................................................	22	1	106.00	106	1	0	105	0	0	0
....................................................................AGAGAATAGTTGCTGTGCTA-T.................................................................................................................................................................................	21	1	53.00	53	3	0	45	0	3	2
...............................................................................................................TATCACAGTGGCTGTTCTTTT.......................................................................................................................................	21	3	25.00	75	8	62	0	0	0	5
................................................................................................................ATCACAGTGGCTGTTCTTTTT......................................................................................................................................	21	3	14.67	44	0	44	0	0	0	0
....................................................................AGAGAATAGTTGCTGTGCTA-TAT...............................................................................................................................................................................	23	1	14.00	14	0	0	14	0	0	0
...............................................................................................................TATCACAGTGGCTGTTCTTTTTG.....................................................................................................................................	23	2	5.00	10	0	7	0	0	0	3
...............................................................................................................TATCACAGTGGCTGTTCTTT........................................................................................................................................	20	3	5.00	15	6	8	0	0	0	1
....................................................................AGAGAATAGTTGCTGTGCTA-..................................................................................................................................................................................	20	1	5.00	5	2	0	3	0	0	0
.....................................................................GAGAATAGTTGCTGTGCTA-T.................................................................................................................................................................................	20	1	3.00	3	0	0	3	0	0	0
................................................................................................................ATCACAGTGGCTGTTCTTTT.......................................................................................................................................	20	3	3.00	9	0	9	0	0	0	0
.....................................................................GAGAATAGTTGCTGTGCTA-TAT...............................................................................................................................................................................	22	1	2.00	2	0	0	2	0	0	0
...............................................................................................................TATCACAGTGGCTGTTCTTTTTGT....................................................................................................................................	24	1	2.00	2	0	2	0	0	0	0
....................................................................AGAGAATAGTTGCTGTGCTA-G.................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
...............................................................................................................TATCACAGTGGCTGTTCTT.........................................................................................................................................	19	3	1.00	3	0	3	0	0	0	0
....................................................................AGAGAATAGTTGCTGTGCTA-TT................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0
....................................................................AGAGAATAGTTGCTGTGCTT-..................................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0
....................................................................AGAGAATAGTTGCTGTGCTA-TATC..............................................................................................................................................................................	24	1	1.00	1	0	0	1	0	0	0
................................................................................................................ATCACAGTGGCTGTTCTTTTTG.....................................................................................................................................	22	2	1.00	2	0	2	0	0	0	0
.................................................................................................................TCACAGTGGCTGTTCTTTTT......................................................................................................................................	20	3	0.67	2	0	2	0	0	0	0
.................................................................................................................TCACAGTGGCTGTTCTTTTTGA....................................................................................................................................	22	2	0.50	1	0	1	0	0	0	0
.................................................................................................................TCACAGTGGCTGTTCTTTT.......................................................................................................................................	19	3	0.33	1	0	1	0	0	0	0
...............................................................................................................TATCACAGTGGCTGTTCTTTTA......................................................................................................................................	22	3	0.33	1	0	1	0	0	0	0
..............................................................................................................ATATCACAGTGGCTGTTCTTTT.......................................................................................................................................	22	3	0.33	1	0	1	0	0	0	0
...............................................................................................................TATCACAGTGGCTGTTCTTTTG......................................................................................................................................	22	3	0.33	1	0	1	0	0	0	0
...............................................................................................................TATCACAGTGGCTGTTCTTTTTA.....................................................................................................................................	23	3	0.33	1	0	1	0	0	0	0
..................................................................................................................CACAGTGGCTGTTCTTTTT......................................................................................................................................	19	3	0.33	1	0	1	0	0	0	0
...............................................................................................................TATCACAGTGGCTGTTCTTC........................................................................................................................................	20	3	0.33	1	1	0	0	0	0	0

droAna3

----------------------------------------------------------------------------GTGGCTGTGCTG-TAAGTTTCA------AAATCTATATCACAGTGGCTGTTCTTTTTGCACCTAAAGTGCCAAACAGCCAA-ACCCGAGAAT------G-------TTC------------TG---------------------------------TGAT----TT-T---T-CGTTATCCGACGACA-AA	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
...............................................................................................................TATCACAGTGGCTGTTCTTTTT......................................................................................................................................	22	3	15043.33	45130	367	44752	0	0	7	4
...............................................................................................................TATCACAGTGGCTGTTCTTTT.......................................................................................................................................	21	3	3049.33	9148	97	9039	2	0	2	8
...............................................................................................................TATCACAGTGGCTGTTCTTTTC......................................................................................................................................	22	3	462.00	1386	0	1386	0	0	0	0
...............................................................................................................TATCACAGTGGCTGTTCTTT........................................................................................................................................	20	3	276.00	828	26	792	0	0	8	2
...............................................................................................................TATCACAGTGGCTGTTCTTTC.......................................................................................................................................	21	3	57.67	173	0	172	0	0	0	1
...............................................................................................................TATCACAGTGGCTGTTCTTC........................................................................................................................................	20	3	37.00	111	0	111	0	0	0	0
................................................................................................................ATCACAGTGGCTGTTCTTTTT......................................................................................................................................	21	3	35.67	107	40	67	0	0	0	0
...............................................................................................................TATCACAGTGGCTGTTCTTTTTC.....................................................................................................................................	23	3	34.67	104	0	104	0	0	0	0
...............................................................................................................TATCACAGTGGCTGTTCTTTTTA.....................................................................................................................................	23	3	33.67	101	3	98	0	0	0	0
...............................................................................................................TATCACAGTGGCTGTTCTT.........................................................................................................................................	19	3	17.33	52	8	39	0	0	2	3
...............................................................................................................TATCACAGTGGCTGTTCTTTTTG.....................................................................................................................................	23	2	14.00	28	2	24	0	0	1	1
.................................................................................................................TCACAGTGGCTGTTCTTTTTGC....................................................................................................................................	22	1	12.00	12	0	12	0	0	0	0
..................................................................................................................CACAGTGGCTGTTCTTTTT......................................................................................................................................	19	3	8.67	26	0	26	0	0	0	0
.................................................................................................................TCACAGTGGCTGTTCTTTTT......................................................................................................................................	20	3	8.00	24	5	19	0	0	0	0
...............................................................................................................TATCACAGTGGCTGTTCT..........................................................................................................................................	18	3	6.00	18	0	18	0	0	0	0
................................................................................................................ATCACAGTGGCTGTTCTTTT.......................................................................................................................................	20	3	6.00	18	7	11	0	0	0	0
...................................................................................................................ACAGTGGCTGTTCTTTTT......................................................................................................................................	18	3	6.00	18	0	18	0	0	0	0
...............................................................................................................TATCACAGTGGCTGTTCTTTTA......................................................................................................................................	22	3	5.33	16	0	15	0	0	0	1
...............................................................................................................TATCACAGTGGCTGTTCTTTTTGC....................................................................................................................................	24	1	5.00	5	0	5	0	0	0	0
...............................................................................................................TATCACAGTGGCTGTTCTTTG.......................................................................................................................................	21	3	4.33	13	0	13	0	0	0	0
...............................................................................................................TATCACAGTGGCTGTTCTTTTG......................................................................................................................................	22	3	3.33	10	1	9	0	0	0	0
...............................................................................................................TATCACAGTGGCTGTTCTTTTTAA....................................................................................................................................	24	3	3.00	9	1	7	0	0	1	0
...............................................................................................................TATCACAGTGGCTGTTCTTTTTGT....................................................................................................................................	24	2	2.50	5	0	5	0	0	0	0
................................................................................................................ATCACAGTGGCTGTTCTTT........................................................................................................................................	19	3	2.00	6	3	3	0	0	0	0
.................................................................................................................TCACAGTGGCTGTTCTTTT.......................................................................................................................................	19	3	1.67	5	0	5	0	0	0	0
..............................................................................................................ATATCACAGTGGCTGTTCTTTT.......................................................................................................................................	22	3	1.67	5	0	5	0	0	0	0
...............................................................................................................TATCACAGTGGCTGTTCTC.........................................................................................................................................	19	3	1.00	3	0	3	0	0	0	0
................................................................................................................ATCACAGTGGCTGTTCTTTTC......................................................................................................................................	21	3	1.00	3	0	3	0	0	0	0
...............................................................................................................TATCACAGTGGCTGTTCTTTTAA.....................................................................................................................................	23	3	0.67	2	0	2	0	0	0	0
..............................................................................................................ATATCACAGTGGCTGTTCTTT........................................................................................................................................	21	3	0.67	2	0	2	0	0	0	0
...............................................................................................................TATCACAGTGGCTGTTCTTTAC......................................................................................................................................	22	3	0.67	2	0	2	0	0	0	0
..................................................................................................................CACAGTGGCTGTTCTTTT.......................................................................................................................................	18	3	0.67	2	0	2	0	0	0	0
...............................................................................................................TATCACAGTGGCTGTTCTTTTTGA....................................................................................................................................	24	2	0.50	1	0	1	0	0	0	0
...............................................................................................................TATCACAGTGGCTGTTCTTTTGA.....................................................................................................................................	23	3	0.33	1	0	1	0	0	0	0

droBip1

-----------------------------------------------GCCTTTAA--------AGTAGAGAGAATAGTGGCTGTGCTG-TATGTTACC-A------TTCTATATCACAGTGGCTGTTCTTTTTGCACCTAAAGTGCCAAACAGCCAAGACCCAAGAAT-----------------------------TG---------------------------------TGAT----TT-T---T-CGCCATCC---GACA-GA	Size	Hit Count	Total Norm	Total
No Reads

droKik1

AAGGCTC--ATTTGGGTTTATATTTTCT---TAGTGTG----ACATTTCTTCTACCGTGGTTAGCCCCAGGGAACTGCTGCTG--CTGATATATTA-T-CAAGAATTTCTATATCACAGTGGCTGTTCTTTTTGGTTGCACG--GC-CAAGTT-------CAGCGATT------TGTCATCAGCGC-------------------------------------------------------------------G--G---CCTC-AG	Size	Hit Count	Total Norm	Total
No Reads

droFic1

TGAAT--------------------------------------CACAGCCTTTAA--------AGTAGAGGGAATAGTTGCTGTGCTG-TAAGTTATTTATCAAAAATCTATATCACAGTGGCTGTTCTTTTTGTACCTAAAGTGCCAAACAT---------------------------CAATGT---TT-T----TGTT-------------------------------TTTCTTTTCG-----TTCG-TATCT---GAC---A	Size	Hit Count	Total Norm	Total
No Reads

droEle1

----------------------------------------------AGCCTTTAA--------AGTAGAGGGAATAGTTGCTGTGCTG-TAAGTAACT-AAACTATACCTATATCACAGTGGCTGTTCTTTTTGTACCTAAAGTGCCAAACAT---------------------------CAAAGCGGCCAATATT-TGTT-------------------------------TTCATT---T-----------TCCC---GACA-AA	Size	Hit Count	Total Norm	Total
No Reads

droRho1

T------------------------------------------CACAGCCTTTAA--------AGTAGAGGGAATAGTTGCTGTGCTG-TAAGTTACT-A-ACTATACCTATATCACAGTGGCTGTTCTTTTTGTACCTAAAGTGCCAAACAT---------------------------CAAAGC---TC-T----AGTT-------------------------------TTATTT---T-----------TCCT---GACA-AA	Size	Hit Count	Total Norm	Total
No Reads

droBia1

--------------------------------------------ACAGCCTTTAA--------AGTAGAGGGAATAGTTGCTGTGCTG-TAAGTTACC-AAGCTATATCTATATCACAGTGGCTGTTCTTTTTGTACCTAAAGTGCCTGACAT---------------------------CAGACG---TT-T----AGTT------------------------------------C---T-----------CCCT---GACA-AG	Size	Hit Count	Total Norm	Total
No Reads

droTak1

--------------------------------------------ATAGCCTTTAA--------AGTAGAGGGAATAGTTGCTGTGCTG-TAAGTTACT-AAGCTATATCTATATCACAGTGGCTGTTCTTTTTGTACCTAAAGTGCCTAACAC---------------------------CAGTCG---T----------T-------------------------------TTAGTT---T-----------ATCT---GACA-AA	Size	Hit Count	Total Norm	Total
No Reads

droEug1

T------------------------------------------CACAGCCTTTAA--------AGTAGAGGGAATAGTTGCTGTGTTG-TATGCTACT-TAACAATATCTATATCACAGTGGCTGTTCTTTTTGCATCTAAAGTGACTAACAT---------------------------CATTCG---TT-T----TGTT-------------------------------TTTT---GTT--------------T---TATA-TT	Size	Hit Count	Total Norm	Total
No Reads

dm3

T------------------------------------------CACAGCCTTTAA--------TGTAGAGGGAATAGTTGCTGTGCTG-TAAGTTAAT-ATACCATATCTATATCACAGTGGCTGTTCTTTTTGTACCTAAAGTGCCTAACAT---------------------------CATTAT---T--TAATTTT----------------------------------TTTTT-TTT-----TTGG--C--A---CACG-AA	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
...............................................................................................................TATCACAGTGGCTGTTCTTTTT......................................................................................................................................	22	3	20801.00	62403	0	0	0	0	8	1	357	2224	923	525	1	3	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	47	2	17	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	154	592	112	442	121	6275	93	4304	615	4	1	618	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	97	0	80	0	77	0	123	0	0	0	0	0	0	0	0	6	37004	6481	7	9	13	0	0	60	0	59	0	0	0	0	1	0	0	0	3	17	5	38	4	21	2	5	36	10	4	2	4	3	8	68	269	366	6	8	5	9	13	24	0
....................................................................AGGGAATAGTTGCTGTGCTG-TA................................................................................................................................................................................	22	1	19494.00	19494	0	0	0	0	0	0	75	158	1	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	205	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3076	389	73	39	2947	4	1	1	0	1	1	0	0	0	0	0	0	0	3	1	121	0	7	1	1	417	442	8	0	0	205	6	9	292	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	105	309	273	53	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	2	1	5	0	13	6	0	0	0	0	0	0	0	41	27	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	10123	4	0	2	5	0	0	2	0	0	0	0	0	0	0	0	0	0	2	1	0	4	0	3	0	0	0	1	1	0	0	0	0	2	1	2	0	0	1	0	0	0	0
....................................................................AGGGAATAGTTGCTGTGCTG-..................................................................................................................................................................................	20	1	5013.00	5013	0	0	0	0	0	0	1	7	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4166	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	81	10	0	5	28	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	13	4	6	0	0	6	0	0	12	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	59	79	21	5	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	490	1	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................TATCACAGTGGCTGTTCTTTT.......................................................................................................................................	21	3	4534.67	13604	0	0	0	0	3	0	46	283	290	234	3	4	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	15	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	33	120	21	35	34	787	18	563	151	0	0	203	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	43	0	28	0	28	0	49	0	0	0	0	0	0	0	0	4	6017	3827	3	1	8	0	0	20	0	16	0	0	0	0	0	0	0	1	4	11	4	20	3	19	2	1	22	7	2	6	8	9	2	86	300	142	3	10	2	15	7	21	0
....................................................................AGGGAATAGTTGCTGTGCTG-T.................................................................................................................................................................................	21	1	1791.00	1791	0	0	0	0	0	0	5	9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	164	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	183	38	15	4	243	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	10	0	1	2	0	32	17	6	0	0	16	2	0	41	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6	74	102	40	9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	763	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................GGGAATAGTTGCTGTGCTG-TA................................................................................................................................................................................	21	1	1069.00	1069	0	0	0	0	0	0	10	12	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	254	42	10	6	414	2	0	0	0	1	0	0	0	1	0	1	0	0	0	0	2	0	0	0	0	32	96	2	0	0	27	4	0	52	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	92	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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...............................................................................................................TATCACAGTGGCTGTTCTTTTG......................................................................................................................................	22	3	25.00	75	0	0	0	0	1	0	8	28	12	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	9	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
....................................................................AGGGAATAGTTGCTGTGCTG-TG................................................................................................................................................................................	22	1	25.00	25	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	8	0	1	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................GGAATAGTTGCTGTGCTG-TA................................................................................................................................................................................	20	1	21.00	21	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	8	3	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................GGGAATAGTTGCTGTGCTG-..................................................................................................................................................................................	19	1	20.00	20	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	2	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................AGGGAATAGTTGCTGTGCTG-TAAG..............................................................................................................................................................................	24	1	20.00	20	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	13	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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...............................................................................................................TATCACAGTGGCTGTTCTTTC.......................................................................................................................................	21	3	13.67	41	0	0	0	0	2	0	2	4	2	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	15	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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droSim2

T------------------------------------------CACAGCCTTTAA--------AGTAGAGGGAATAGTTGCTGTGCTG-TAAGTTTAT-ATACCGTATCTATATCACAGTGGCTGTTCTTTTTGTACCTAAAG-GC-------------------------ATTTTACATCATTAT---T--TAATTTACT-------------------------------TTTTT---TT-T---T-C------G---CACA-CG	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
...............................................................................................................TATCACAGTGGCTGTTCTTTTT......................................................................................................................................	22	3	816.00	2448	0	0	79	797	27	222	825	375	53	60	1	3	1	5	0	0	0
....................................................................AGGGAATAGTTGCTGTGCTG-TA................................................................................................................................................................................	22	1	453.00	453	1	2	421	0	0	0	3	0	3	8	0	15	0	0	0	0	0
...............................................................................................................TATCACAGTGGCTGTTCTTTT.......................................................................................................................................	21	3	162.67	488	1	0	81	119	9	45	124	73	12	15	4	1	0	4	0	0	0
...............................................................................................................TATCACAGTGGCTGTTCTTTTTG.....................................................................................................................................	23	2	66.00	132	0	0	8	51	0	2	40	18	7	5	1	0	0	0	0	0	0
...............................................................................................................TATCACAGTGGCTGTTCTT.........................................................................................................................................	19	3	61.33	184	0	0	2	1	27	135	6	2	6	4	1	0	0	0	0	0	0
....................................................................AGGGAATAGTTGCTGTGCTG-TAA...............................................................................................................................................................................	23	1	60.00	60	0	0	57	0	0	0	0	0	1	0	1	1	0	0	0	0	0
....................................................................AGGGAATAGTTGCTGTGCTG-..................................................................................................................................................................................	20	1	59.00	59	0	0	54	0	0	0	0	0	0	0	0	5	0	0	0	0	0
....................................................................AGGGAATAGTTGCTGTGCTG-T.................................................................................................................................................................................	21	1	51.00	51	0	0	40	0	0	0	0	0	7	1	0	3	0	0	0	0	0
...............................................................................................................TATCACAGTGGCTGTTCTTTTTA.....................................................................................................................................	23	3	50.67	152	0	0	0	1	0	0	90	61	0	0	0	0	0	0	0	0	0
...............................................................................................................TATCACAGTGGCTGTTCTTT........................................................................................................................................	20	3	50.67	152	0	0	33	12	3	57	16	14	9	5	2	0	0	1	0	0	0
...............................................................................................................TATCACAGTGGCTGTTCTTTTTAA....................................................................................................................................	24	3	43.33	130	0	0	0	0	0	0	78	52	0	0	0	0	0	0	0	0	0
...............................................................................................................TATCACAGTGGCTGTTCT..........................................................................................................................................	18	3	39.00	117	0	0	0	0	6	105	1	4	0	0	1	0	0	0	0	0	0
...............................................................................................................TATCACAGTGGCTGTTCTTTTTGT....................................................................................................................................	24	1	38.00	38	0	0	2	12	0	0	12	8	1	3	0	0	0	0	0	0	0
....................................................................AGGGAATAGTTGCTGTGC.....................................................................................................................................................................................	18	1	20.00	20	0	0	20	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................GTGGCTGTTCTTTTT......................................................................................................................................	15	3	18.67	56	0	0	0	0	0	0	0	0	27	28	1	0	0	0	0	0	0
................................................................................................................ATCACAGTGGCTGTTCTTTTT......................................................................................................................................	21	3	18.33	55	0	0	0	55	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................GGGAATAGTTGCTGTGCTG-TA................................................................................................................................................................................	21	1	16.00	16	0	0	15	0	0	0	0	0	0	0	0	1	0	0	0	0	0
...............................................................................................................TATCACAGTGGCTGT.............................................................................................................................................	15	3	15.00	45	0	0	0	0	0	0	0	0	12	30	2	0	1	0	0	0	0
...............................................................................................................TATCACAGTGGCTGTTCTTTTAA.....................................................................................................................................	23	3	13.33	40	0	0	0	0	0	0	21	19	0	0	0	0	0	0	0	0	0
...............................................................................................................TATCACAGTGGCTGTTCTTTTAAA....................................................................................................................................	24	3	12.67	38	0	0	0	0	0	0	21	17	0	0	0	0	0	0	0	0	0
....................................................................AGGGAATAGTTGCTGTGCTG-TAAA..............................................................................................................................................................................	24	1	11.00	11	0	0	10	0	0	0	0	0	0	0	0	1	0	0	0	0	0
....................................................................AGGGAATAGTTGCTGTGCTG-G.................................................................................................................................................................................	21	1	10.00	10	0	0	10	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................TATCACAGTGGCTGTTCTTTTA......................................................................................................................................	22	3	7.33	22	0	0	0	0	0	0	12	8	1	0	1	0	0	0	0	0	0
....................................................................AGGGAATAGTTGCTGTGCTG-C.................................................................................................................................................................................	21	1	7.00	7	0	0	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................GTGGCTGTTCTTTTTGT....................................................................................................................................	17	1	6.00	6	0	0	0	0	0	0	0	0	3	3	0	0	0	0	0	0	0
.......................................................................GAATAGTTGCTGTGCTG-TA................................................................................................................................................................................	19	1	5.00	5	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................TATCACAGTGGCTGTTCTTTTTGTAA..................................................................................................................................	26	1	3.00	3	0	0	0	0	0	0	2	1	0	0	0	0	0	0	0	0	0
....................................................................AGGGAATAGTTGCTGTGCTG-TT................................................................................................................................................................................	22	1	3.00	3	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................AGGGAATAGTTGCTGTGCTG-TAC...............................................................................................................................................................................	23	1	3.00	3	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................ATCACAGTGGCTGTTCTTTT.......................................................................................................................................	20	3	2.67	8	0	0	0	5	3	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................TATCACAGTGGCTGTT............................................................................................................................................	16	3	2.67	8	0	0	0	0	0	0	1	0	0	5	2	0	0	0	0	0	0
................................................................................................................ATCACAGTGGCTGTTCTTTTTG.....................................................................................................................................	22	2	2.50	5	0	0	0	4	0	0	0	1	0	0	0	0	0	0	0	0	0
....................................................................AGGGAATAGTTGCTGTGG.....................................................................................................................................................................................	18	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................TATCACAGTGGCTGTTCTTTTTGTA...................................................................................................................................	25	1	2.00	2	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0
.................................................................................................................TCACAGTGGCTGTTCTTTTT......................................................................................................................................	20	3	1.33	4	0	0	0	3	0	0	1	0	0	0	0	0	0	0	0	0	0
...............................................................................................................TATCACAGTGGCTGTTCTTTA.......................................................................................................................................	21	3	1.33	4	0	0	0	0	0	0	2	2	0	0	0	0	0	0	0	0	0
...............................................................................................................TATCACAGTGGCTGTTCTTTTTGTT...................................................................................................................................	25	2	1.00	2	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0
................................................................................................................ATCACAGTGGCTGTTCTTTTTGT....................................................................................................................................	23	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................GGGAATAGTTGCTGTGCTG-TAA...............................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................TATCACAGTGGCTGTTCTTTTTGA....................................................................................................................................	24	2	1.00	2	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0
.....................................................................GGGAATAGTTGCTGTGCTG-..................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
.....................................................................GGGAATAGTTGCTGTGCTG-TT................................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................TATCTATATCACAGTGGCTGTT............................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................AGGGAATAGTTGCTGTGCT....................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
......................................................................................................................GTGGCTGTTCTTTTTG.....................................................................................................................................	16	2	1.00	2	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0
.................................................................TAGAGGGAATAGTTGCTGTGCT....................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
....................................................................AGGGAATAGTTGCTGTGCTG-TG................................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................ATAGTTGCTGTGCTG-TAA...............................................................................................................................................................................	18	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................TGGCTGTTCTTTTTGT....................................................................................................................................	16	2	1.00	2	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0
...........................................................................................AGTTTAT-ATACCGTATCTA............................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
...............................................................................................................TATCACAGTGGCTGTTCTTTTC......................................................................................................................................	22	3	0.67	2	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0
...................................................................................................................ACAGTGGCTGTTCTTTTT......................................................................................................................................	18	3	0.67	2	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0
...............................................................................................................TATCACAGTGGCTGTTCTTC........................................................................................................................................	20	3	0.67	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................TATCACAGTGGCTGTTCTTTG.......................................................................................................................................	21	3	0.67	2	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................ATCACAGTGGCTGTTCTTTTTA.....................................................................................................................................	22	3	0.67	2	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0

droSec2

T------------------------------------------CACAGCCTTTAA--------AGTAGAGGGAATAGTTGCTGTGCTG-TAAGTTAAT-ATACCATATCTATATCACAGTGGCTGTTCTTTTTGTACCTAAAG-GC-------------------------ATTTTACATCATTAT---T--TAATTTACT-------------------------------TTTT---TT--------T------G---CACA-CG	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
...............................................................................................................TATCACAGTGGCTGTTCTTTTT......................................................................................................................................	22	3	27140.33	81421	1713	14	78922	772
...............................................................................................................TATCACAGTGGCTGTTCTTTT.......................................................................................................................................	21	3	8065.33	24196	227	10	23821	138
...............................................................................................................TATCACAGTGGCTGTTCTTTTTG.....................................................................................................................................	23	2	3579.50	7159	101	1	6979	78
...............................................................................................................TATCACAGTGGCTGTTCTTT........................................................................................................................................	20	3	1417.00	4251	23	3	4190	35
...............................................................................................................TATCACAGTGGCTGTTCTTTTTGT....................................................................................................................................	24	1	1338.00	1338	39	0	1270	29
...............................................................................................................TATCACAGTGGCTGTTCTT.........................................................................................................................................	19	3	259.67	779	3	0	757	19
...............................................................................................................TATCACAGTGGCTGTTCTTTTTA.....................................................................................................................................	23	3	126.33	379	2	0	368	9
...................................................................................................................ACAGTGGCTGTTCTTTTT......................................................................................................................................	18	3	112.00	336	0	0	334	2
................................................................................................................ATCACAGTGGCTGTTCTTTTT......................................................................................................................................	21	3	92.00	276	147	0	128	1
....................................................................AGGGAATAGTTGCTGTGCTG-TA................................................................................................................................................................................	22	1	71.00	71	2	0	69	0
...............................................................................................................TATCACAGTGGCTGTTCT..........................................................................................................................................	18	3	67.33	202	1	0	196	5
...............................................................................................................TATCACAGTGGCTGTTCTTTTTGA....................................................................................................................................	24	2	54.50	109	1	0	108	0
...............................................................................................................TATCACAGTGGCTGTTCTTTTA......................................................................................................................................	22	3	32.33	97	2	0	94	1
...............................................................................................................TATCACAGTGGCTGTTCTTTTC......................................................................................................................................	22	3	29.00	87	1	0	85	1
................................................................................................................ATCACAGTGGCTGTTCTTTTTG.....................................................................................................................................	22	2	22.50	45	16	0	29	0
.................................................................................................................TCACAGTGGCTGTTCTTTTT......................................................................................................................................	20	3	19.67	59	10	0	48	1
...................................................................................................................ACAGTGGCTGTTCTTTTTG.....................................................................................................................................	19	2	16.50	33	0	0	33	0
...............................................................................................................TATCACAGTGGCTGTTCTTTTTAA....................................................................................................................................	24	3	14.00	42	0	0	41	1
...................................................................................................................ACAGTGGCTGTTCTTTTTGT....................................................................................................................................	20	1	13.00	13	0	0	13	0
....................................................................AGGGAATAGTTGCTGTGCTG-..................................................................................................................................................................................	20	1	12.00	12	1	0	10	1
................................................................................................................ATCACAGTGGCTGTTCTTTTTGT....................................................................................................................................	23	1	12.00	12	4	0	8	0
................................................................................................................ATCACAGTGGCTGTTCTTTT.......................................................................................................................................	20	3	11.33	34	23	0	11	0
...............................................................................................................TATCACAGTGGCTGTTCTTTTTC.....................................................................................................................................	23	3	11.00	33	1	0	32	0
...............................................................................................................TATCACAGTGGCTGTTCTTTTTGTT...................................................................................................................................	25	2	10.00	20	0	0	19	1
....................................................................AGGGAATAGTTGCTGTGCTG-T.................................................................................................................................................................................	21	1	9.00	9	0	0	9	0
...............................................................................................................TATCACAGTGGCTGTTCTTTTG......................................................................................................................................	22	3	7.33	22	2	0	20	0
...............................................................................................................TATCACAGTGGCTGTTCTTTTTGTA...................................................................................................................................	25	1	7.00	7	0	0	6	1
..................................................................................................................CACAGTGGCTGTTCTTTTT......................................................................................................................................	19	3	6.33	19	2	0	17	0
.................................................................................................................TCACAGTGGCTGTTCTTTT.......................................................................................................................................	19	3	5.33	16	2	0	14	0
...............................................................................................................TATCACAGTGGCTGTTCTTTTTGC....................................................................................................................................	24	2	5.00	10	0	0	10	0
.................................................................................................................TCACAGTGGCTGTTCTTTTTGT....................................................................................................................................	22	1	5.00	5	1	0	4	0
...............................................................................................................TATCACAGTGGCTGTTCTTTA.......................................................................................................................................	21	3	4.33	13	0	0	13	0
...............................................................................................................TATCACAGTGGCTGTTCTTTC.......................................................................................................................................	21	3	3.67	11	0	0	11	0
...............................................................................................................TATCACAGTGGCTGTTCTTTTAA.....................................................................................................................................	23	3	3.33	10	0	0	10	0
..................................................................................................................CACAGTGGCTGTTCTTTT.......................................................................................................................................	18	3	2.33	7	1	0	6	0
................................................................................................................ATCACAGTGGCTGTTCTTT........................................................................................................................................	19	3	2.33	7	5	0	2	0
.....................................................................GGGAATAGTTGCTGTGCTG-TA................................................................................................................................................................................	21	1	2.00	2	0	0	1	1
....................................................................AGGGAATAGTTGCTGTGCT....................................................................................................................................................................................	19	1	2.00	2	0	0	2	0
...............................................................................................................TATCACAGTGGCTGTTCTTTG.......................................................................................................................................	21	3	2.00	6	2	0	4	0
...............................................................................................................TATCACAGTGGCTGTTCTTA........................................................................................................................................	20	3	1.00	3	0	0	3	0
..................................................................................................................CACAGTGGCTGTTCTTTTTG.....................................................................................................................................	20	2	1.00	2	1	0	1	0
...................................................................................................................ACAGTGGCTGTTCTTTTTGTA...................................................................................................................................	21	1	1.00	1	0	0	1	0
................................................................................................................ATCACAGTGGCTGTTCTTTTTA.....................................................................................................................................	22	3	1.00	3	0	0	3	0
.................................................................TAGAGGGAATAGTTGCTGTGC.....................................................................................................................................................................................	21	1	1.00	1	0	0	1	0
.................................................................................................................TCACAGTGGCTGTTCTTTTTG.....................................................................................................................................	21	2	1.00	2	1	0	1	0
.....................................................................................................................AGTGGCTGTTCTTTTTGT....................................................................................................................................	18	1	1.00	1	0	0	0	1
...............................................................................................................TATCACAGTGGCTGTTCTTC........................................................................................................................................	20	3	1.00	3	0	0	2	1

droYak3

T------------------------------------------CACAGCCTTTAA--------CGTAGAGGGAATAGTTGCTGTGCTG-TAAGTTAAT-AACAAATATCTATATCACAGTGGCTGTTCTTTTTGTACCTAAAGTGCCTAACAT---------------------------CATTAA---T---AATTTGTT-------------------------------GCTT----TT-T---T-T------G---CTCA-CA	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
...............................................................................................................TATCACAGTGGCTGTTCTTTTT......................................................................................................................................	22	3	88528.67	265586	0	234	265335	5	0	0	12	0	0	0	0
...............................................................................................................TATCACAGTGGCTGTTCTTTT.......................................................................................................................................	21	3	15870.00	47610	0	63	47538	1	0	0	8	0	0	0	0
...............................................................................................................TATCACAGTGGCTGTTCTTTTC......................................................................................................................................	22	3	2566.67	7700	0	0	7700	0	0	0	0	0	0	0	0
....................................................................AGGGAATAGTTGCTGTGCTG-TA................................................................................................................................................................................	22	1	1641.00	1641	1	0	1583	57	0	0	0	0	0	0	0
...............................................................................................................TATCACAGTGGCTGTTCTTT........................................................................................................................................	20	3	1006.67	3020	0	15	3003	1	0	0	1	0	0	0	0
....................................................................AGGGAATAGTTGCTGTGCTG-T.................................................................................................................................................................................	21	1	363.00	363	0	0	348	15	0	0	0	0	0	0	0
...............................................................................................................TATCACAGTGGCTGTTCTTTC.......................................................................................................................................	21	3	276.00	828	0	0	828	0	0	0	0	0	0	0	0
...............................................................................................................TATCACAGTGGCTGTTCTTTTTG.....................................................................................................................................	23	2	209.00	418	0	2	416	0	0	0	0	0	0	0	0
...............................................................................................................TATCACAGTGGCTGTTCTTTTTC.....................................................................................................................................	23	3	165.00	495	0	1	494	0	0	0	0	0	0	0	0
...............................................................................................................TATCACAGTGGCTGTTCTTC........................................................................................................................................	20	3	138.33	415	0	0	415	0	0	0	0	0	0	0	0
...............................................................................................................TATCACAGTGGCTGTTCTTTTTGT....................................................................................................................................	24	1	135.00	135	0	1	134	0	0	0	0	0	0	0	0
....................................................................AGGGAATAGTTGCTGTGCTG-C.................................................................................................................................................................................	21	1	131.00	131	0	0	131	0	0	0	0	0	0	0	0
................................................................................................................ATCACAGTGGCTGTTCTTTTT......................................................................................................................................	21	3	92.00	276	0	9	267	0	0	0	0	0	0	0	0
...............................................................................................................TATCACAGTGGCTGTTCTTTTTA.....................................................................................................................................	23	3	90.33	271	0	2	269	0	0	0	0	0	0	0	0
...............................................................................................................TATCACAGTGGCTGTTCTT.........................................................................................................................................	19	3	62.00	186	0	2	184	0	0	0	0	0	0	0	0
....................................................................AGGGAATAGTTGCTGTGCTG-..................................................................................................................................................................................	20	1	52.00	52	0	0	47	5	0	0	0	0	0	0	0
...................................................................................................................ACAGTGGCTGTTCTTTTT......................................................................................................................................	18	3	47.00	141	0	1	140	0	0	0	0	0	0	0	0
.....................................................................GGGAATAGTTGCTGTGCTG-TA................................................................................................................................................................................	21	1	46.00	46	0	0	42	4	0	0	0	0	0	0	0
...............................................................................................................TATCACAGTGGCTGTTCTTTTA......................................................................................................................................	22	3	31.33	94	0	0	94	0	0	0	0	0	0	0	0
.................................................................................................................TCACAGTGGCTGTTCTTTTT......................................................................................................................................	20	3	22.33	67	0	0	67	0	0	0	0	0	0	0	0
...............................................................................................................TATCACAGTGGCTGTTCTTTTTGC....................................................................................................................................	24	2	21.50	43	0	0	43	0	0	0	0	0	0	0	0
..................................................................................................................CACAGTGGCTGTTCTTTTT......................................................................................................................................	19	3	21.00	63	0	1	62	0	0	0	0	0	0	0	0
...............................................................................................................TATCACAGTGGCTGTTCTTTG.......................................................................................................................................	21	3	16.67	50	0	0	50	0	0	0	0	0	0	0	0
................................................................................................................ATCACAGTGGCTGTTCTTTT.......................................................................................................................................	20	3	12.67	38	0	2	36	0	0	0	0	0	0	0	0
....................................................................AGGGAATAGTTGCTGTGCTG-TT................................................................................................................................................................................	22	1	12.00	12	0	0	10	2	0	0	0	0	0	0	0
....................................................................AGGGAATAGTTGCTGTGCT....................................................................................................................................................................................	19	1	10.00	10	0	0	9	1	0	0	0	0	0	0	0
....................................................................AGGGAATAGTTGCTGTGCTG-TAA...............................................................................................................................................................................	23	1	9.00	9	0	0	8	1	0	0	0	0	0	0	0
...............................................................................................................TATCACAGTGGCTGTTCT..........................................................................................................................................	18	3	7.33	22	0	1	21	0	0	0	0	0	0	0	0
....................................................................AGGGAATAGTTGCTGTGC.....................................................................................................................................................................................	18	1	7.00	7	0	0	7	0	0	0	0	0	0	0	0
...............................................................................................................TATCACAGTGGCTGTTCTTTTG......................................................................................................................................	22	3	5.67	17	0	0	17	0	0	0	0	0	0	0	0
..............................................................................................................ATATCACAGTGGCTGTTCTTTT.......................................................................................................................................	22	3	5.67	17	0	0	17	0	0	0	0	0	0	0	0
....................................................................AGGGAATAGTTGCTGTGCTG-TC................................................................................................................................................................................	22	1	5.00	5	0	0	5	0	0	0	0	0	0	0	0
................................................................................................................ATCACAGTGGCTGTTCTTTTC......................................................................................................................................	21	3	4.67	14	0	0	14	0	0	0	0	0	0	0	0
................................................................................................................ATCACAGTGGCTGTTCTTTTTG.....................................................................................................................................	22	2	4.50	9	0	0	9	0	0	0	0	0	0	0	0
.....................................................................GGGAATAGTTGCTGTGCTG-T.................................................................................................................................................................................	20	1	4.00	4	0	0	4	0	0	0	0	0	0	0	0
....................................................................AGGGAATAGTTGCTGTGCC....................................................................................................................................................................................	19	1	3.00	3	0	0	3	0	0	0	0	0	0	0	0
...............................................................................................................TATCACAGTGGCTGTTCTTTGC......................................................................................................................................	22	3	3.00	9	0	0	9	0	0	0	0	0	0	0	0
...............................................................................................................TATCACAGTGGCTGTTCTC.........................................................................................................................................	19	3	2.67	8	0	0	8	0	0	0	0	0	0	0	0
..................................................................................................................CACAGTGGCTGTTCTTTT.......................................................................................................................................	18	3	2.67	8	0	0	8	0	0	0	0	0	0	0	0
.................................................................................................................TCACAGTGGCTGTTCTTTT.......................................................................................................................................	19	3	2.33	7	0	1	6	0	0	0	0	0	0	0	0

droEre2

----------------------------------------------AGCCTTTAA--------AGTAGAGGGAATAGTTGCCGTGCTG-TAAGTTAAT-ATATCATATCTATATCACAGTGGCTGTTCTTTTTGTACCTAAAGTGCCTAACAT---------------------------CATCAT---T--T----TGTT----GCC------------------------TTATT----------TTGG--T--G---CACG-AA	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
...............................................................................................................TATCACAGTGGCTGTTCTTTTT......................................................................................................................................	22	3	10965.67	32897	4900	27970	0	5	6	16	0
...............................................................................................................TATCACAGTGGCTGTTCTTTT.......................................................................................................................................	21	3	2527.67	7583	713	6863	0	1	5	1	0
...............................................................................................................TATCACAGTGGCTGTTCTTTTC......................................................................................................................................	22	3	198.00	594	9	585	0	0	0	0	0
...............................................................................................................TATCACAGTGGCTGTTCTTT........................................................................................................................................	20	3	195.67	587	75	505	0	1	2	4	0
................................................................................................................ATCACAGTGGCTGTTCTTTTT......................................................................................................................................	21	3	131.67	395	370	25	0	0	0	0	0
...............................................................................................................TATCACAGTGGCTGTTCTTTTTG.....................................................................................................................................	23	2	114.00	228	45	182	0	0	1	0	0
...............................................................................................................TATCACAGTGGCTGTTCTTTTTGT....................................................................................................................................	24	1	82.00	82	16	66	0	0	0	0	0
....................................................................AGGGAATAGTTGCCGTGCTG-TA................................................................................................................................................................................	22	1	28.00	28	2	18	0	8	0	0	0
...............................................................................................................TATCACAGTGGCTGTTCTTTC.......................................................................................................................................	21	3	26.00	78	1	77	0	0	0	0	0
...............................................................................................................TATCACAGTGGCTGTTCTTTTTC.....................................................................................................................................	23	3	19.00	57	1	56	0	0	0	0	0
...............................................................................................................TATCACAGTGGCTGTTCTTTTTA.....................................................................................................................................	23	3	18.67	56	16	38	0	0	0	2	0
................................................................................................................ATCACAGTGGCTGTTCTTTT.......................................................................................................................................	20	3	17.33	52	41	11	0	0	0	0	0
...............................................................................................................TATCACAGTGGCTGTTCTTC........................................................................................................................................	20	3	16.33	49	0	48	0	1	0	0	0
...............................................................................................................TATCACAGTGGCTGTTCTT.........................................................................................................................................	19	3	14.33	43	10	30	0	1	1	1	0
.................................................................................................................TCACAGTGGCTGTTCTTTTT......................................................................................................................................	20	3	10.67	32	23	9	0	0	0	0	0
...............................................................................................................TATCACAGTGGCTGTTCTTTTTGC....................................................................................................................................	24	2	5.50	11	0	11	0	0	0	0	0
...............................................................................................................TATCACAGTGGCTGTTCTTTTA......................................................................................................................................	22	3	5.33	16	6	10	0	0	0	0	0
................................................................................................................ATCACAGTGGCTGTTCTTTTTG.....................................................................................................................................	22	2	2.50	5	2	3	0	0	0	0	0
...............................................................................................................TATCACAGTGGCTGTTCTTTG.......................................................................................................................................	21	3	2.33	7	4	3	0	0	0	0	0
..................................................................................................................CACAGTGGCTGTTCTTTTT......................................................................................................................................	19	3	2.00	6	1	5	0	0	0	0	0
.................................................................................................................TCACAGTGGCTGTTCTTTTTGT....................................................................................................................................	22	1	2.00	2	1	1	0	0	0	0	0
................................................................................................................ATCACAGTGGCTGTTCTTT........................................................................................................................................	19	3	2.00	6	6	0	0	0	0	0	0
....................................................................AGGGAATAGTTGCCGTGCTG-T.................................................................................................................................................................................	21	1	2.00	2	0	1	0	1	0	0	0
....................................................................AGGGAATAGTTGCCGTGCTG-C.................................................................................................................................................................................	21	1	2.00	2	0	2	0	0	0	0	0
................................................................................................................ATCACAGTGGCTGTTCTTTTTGT....................................................................................................................................	23	1	2.00	2	1	1	0	0	0	0	0
.....................................................................GGGAATAGTTGCCGTGCTG-TA................................................................................................................................................................................	21	1	2.00	2	0	2	0	0	0	0	0
...............................................................................................................TATCACAGTGGCTGTTCTTTTTCC....................................................................................................................................	24	3	1.67	5	0	5	0	0	0	0	0
...................................................................................................................ACAGTGGCTGTTCTTTTT......................................................................................................................................	18	3	1.33	4	0	4	0	0	0	0	0
..............................................................................................................ATATCACAGTGGCTGTTCTTTTT......................................................................................................................................	23	3	1.33	4	2	2	0	0	0	0	0
..............................................................................................................ATATCACAGTGGCTGTTCTTTT.......................................................................................................................................	22	3	1.33	4	1	3	0	0	0	0	0
...............................................................................................................TATCACAGTGGCTGTTCTTTA.......................................................................................................................................	21	3	1.00	3	0	3	0	0	0	0	0
...............................................................................................................TATCACAGTGGCTGTTCTTTCC......................................................................................................................................	22	3	1.00	3	0	3	0	0	0	0	0
...............................................................................................................TATCACAGTGGCTGTTCTTTTTGTA...................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0	0
..................................................................AGAGGGAATAGTTGCCGTGCT....................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0
...............................................................................................................TATCACAGTGGCTGTTCT..........................................................................................................................................	18	3	1.00	3	2	1	0	0	0	0	0
.....................................................................GGGAATAGTTGCCGTGCTG-T.................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0	0
.................................................................................................................TCACAGTGGCTGTTCTTTT.......................................................................................................................................	19	3	0.67	2	0	2	0	0	0	0	0
...............................................................................................................TATCACAGTGGCTGTTCTTTTCC.....................................................................................................................................	23	3	0.67	2	0	2	0	0	0	0	0
...............................................................................................................TATCACAGTGGCTGTTCTTTTG......................................................................................................................................	22	3	0.67	2	2	0	0	0	0	0	0
...............................................................................................................TATCACAGTGGCTGTTCTTTTTAA....................................................................................................................................	24	3	0.67	2	2	0	0	0	0	0	0
..................................................................................................................CACAGTGGCTGTTCTTTT.......................................................................................................................................	18	3	0.67	2	0	2	0	0	0	0	0
...............................................................................................................TATCACAGTGGCTGTTCTTTACC.....................................................................................................................................	23	3	0.67	2	0	2	0	0	0	0	0
................................................................................................................ATCACAGTGGCTGTTCTTTTG......................................................................................................................................	21	3	0.67	2	2	0	0	0	0	0	0
...............................................................................................................TATCACAGTGGCTGTTCTTTGC......................................................................................................................................	22	3	0.33	1	0	1	0	0	0	0	0
................................................................................................................ATCACAGTGGCTGTTCTTTTTA.....................................................................................................................................	22	3	0.33	1	1	0	0	0	0	0	0

dgr-mir-6-4

scaffold_5621:3398-3467 +

Known

Unknown

intergenic

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-25.0	-25.0	-24.9