dgr-mir-4-2

ATAGGCAACAGTTTTGGTTAAATAATAAATCGATCTATGTTTTATAGAGGTTGCAATTAGTTTCTTTGGTCGTCCAGCCTTAGGTGATTTCTCTGATCATAAAGCTAGACAACCATTGAAGTTCGTTGTGGCATACGCAGCGATTATATAGTGTATATAATATTCCTGATATATGTGTTAA *********************************************..((((((((.((((((..((((.(((.(((.((..((((((.....)))))).))))).))).))))..)))))).))))))))..*********************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V109 male body	M041 female body
..................................................................................................ATAAAGCTAGACAACCATTGA..............................................................	21	0	2	2.00	4	3	1
..................................................................................................ATAAAGCTAGACAACCATTGAA.............................................................	22	0	2	1.00	2	1	1
..............................................................TCTTTGGTCGTCCAGCCTTAG..................................................................................................	21	0	2	0.50	1	1	0
..................................................................................................ATAAAGCTAGACAACCATTGAAA............................................................	23	1	2	0.50	1	1	0

Species	Coordinate	ID	Type	Alignment
droGri2	scaffold_5621:2933-3113 +	dgr-mir-4-2	Known_mirbase	ATA------GGCAAC-AG----------------------T-TTT--GGTTAA--------AT------------A-------------------------AT----------------AAATCGATCTATGTTT---TA-TAG-AGGTTGCAATTAGTTTCTTTGGTCGTCCAGCCTTAGGTGATTTCTCTGATCATAAAGCTAGACAACCATTGAAGTTCGTTGTGGCATACGCAGCGATTATATAGTGTA--------------------------T---------------------------A---TAATATTC-----------------------CT-GATA----TA------------------------TGTGTTAA
droVir3	scaffold_12875:4112236-4112448 +	dvi-mir-4	Known_mirbase	GTA------TATAA--AA--------------AGCACAAGT-TCTCGATTTGA--------TAACCGTCGCAATATATATAT----------AT------A---TATATA----------------TCTATATCA---TA-TAG-AGGTTGCAATTAGTTTCTTTGGTCGTCCAGCCTTAGGTGATTTCTCTGATCATAAAGCTAGACAACCATTGAAGTTCGTTGTGGCATAAGCAGCGGCTATA----------------------------------------------------------------------ATCTG--------ACCATATATATATC----------------------TGATATTCTC-GT--ATACTAT
droMoj3	scaffold_6496:20936556-20936778 -	dmo-mir-4	Known_mirbase	AAT------TTCAAT-TA-------------TAA----AAT-TTC--TAGTGC--------AT------------G--GTT-CAAACTTAAA-AAGAAAA-CA---------AAA-----------TCTATATCG---TA-TAG-AGGTTGCAATTAGTTTCTTTGGTCGTCCAGCCTTAGGTGATTTCTCTGATCATAAAGCTAGACAACCATTGAAGTTCGTTGTGGCATAAGCAGCGCCTATATATAATA--------------------------TATATATATACATCTATGAAAAGTTTTTATGAAA---------------------------------------------GTTCAAAAT----GCAA------------
droWil2	scf2_1100000004514:1651564-1651742 -	dwi-mir-4	Known_mirbase	AAG------CAA--C-AA-------------CCA----ACA-AGC--TAGTGAGAAGAATTAA------------CT--T--TA-------A------------------------------------------CCAAA--TGGCGGGTTGCAATTAGTTTCTTTGGTCGTCCAGCCTTAGGTGATTTCTCTGATCATAAAGCTAGACAACCATTGAAGTTCGTTGTGGCATTATCGCCAGT--------------------------------------------------------------------T-------TAAG-----------GACATC-----AA---TA--GCAAAGTTCAAGTT----TCAT------------
dp5	3:12677349-12677581 -	dps-mir-4	Known_mirbase	ATG------GCCAACCAG-------------TGACGAAAGT-GACAAAAGTGA--------AAAAAGTGACAAAGTTTGTGT----------AC------ACTCCACGAGTTG-AT---------------ACCT---TA-TTG-TGGTTGCAATTAGTTTCTTTGGTCGTCCAGCCTTAGGTGATTTCTCTGATCATAAAGCTAGACAACCATTGAAGTTCGTTGTGGCATTTGCAGCACT-ACCTACCACAACCACACCCACACCA------ACACCC---------------------------A---CACCCACC-----------------------CT-CACA----TC------------------------CATCCCAG
droPer2	scaffold_2:8906085-8906323 +	dpe-mir-4	Known_mirbase	ATG------GCCAACCAG-------------TGACGGAAGT-GACAAAAGTGA--------AAAAAGTGACAAAGTGTGTGT----------AC------ACTCCACGAGTTG-AT---------------ACCT---TA-TTG-TGGTTGCAATTAGTTTCTTTGGTCGTCCAGCCTTAGGTGATTTCTCTGATCATAAAGCTAGACAACCATTGAAGTTCGTTGTGGCATTTGCAGCACT-ACCTACCACAACCACACCCACACCAACACCAACACCC---------------------------A---TACCCACC-----------------------CT-CACA----TC------------------------CATCCCAG
droAna3	scaffold_13266:9731470-9731661 +	dan-mir-4	Known_mirbase	AAG------CTAA---AGTGACTTGGAAATGTAA----AGT-----------------------------------T--T--CA-------A----------------------ATAATATA------------CCAATA-TAA-AGGTTGCAATTAGTTTCTTTGGTCGTCCAGCCTTAGGTGACTTCTCTGATCATAAAGCTAGACAACCATTGAAGTTCGTTGTGGCAATTGCGGCGCTTATTA-A-----------------------------------------------------------CAAGAA--TTTCA--AATGTGAC--T-ATTC-----GAA--AA--AAAATG------TAAA------------------
droBip1	scf7180000396427:874448-874613 +			AAG------CTAA---AG-------------TG-------T-----------------------------------T--T--CA-------A----------------------ATAGT------------GTTT---CT-TAA-AGGTTGCAATTAGTTTCTTTGGTCGTCCAGCCTTAGGTGACTTCACTGATCATAAAGCTAGACAACCATTGAAGTTCGTTGTGGCAATTGCAGCGTTTATTT-A-----------------------------------------------------------TGAAAA--TTTAA------------AAAATT-----AAA--TA--AAAAAG------TGAA------------------
droKik1	scf7180000302679:89187-89372 -			AAGTTAGGGGATAA--AG-------------TGC----AGT-TGT--A---------------------------------------------------------ACAAGTTA-AT---ATAT-----------CCAAACAAGG-CGGTTGCAATTAGTTTCTTTGGTCGTCCAGCCTTAGGTGATTTTTCTGATCATAAAGCTAGACAACCATTGAAGTTCGTTGTGGCATTTGCAGCCTT--------------------------------------------------------------------ATGATATTCAGGATATGTC-C--TAAACC------------AA-----G------TGATATCTCA------------
droFic1	scf7180000454039:847886-848037 -			AGA------CAAG----G-------------TGA----AGT-TAC--CAGTGA--------AA-------------------------------------------------------------------------------AA-CGGTTGCAATTAGTTTCTTTGGTCGTCCAGCCTTAGGTGACTTCTCTGATCATAAAGCTAGACAACCATTGAAGTTCGTTGTGGCATTCGCAGCACT--------------------------------------------------------------------ACA-----------------------ATA-----AAG--TTTA-----G------TGATTCCTAAAGTA--------
droEle1	scf7180000491201:2013828-2013992 -			AAG------CCAA----G-------------TGA----TGTTTTT--TAGTGA--------AA--------------------------------------G---------AGG-----CAAT-----------C---CC-CAA-CGGTTGCAATTAGTTTCTTTGGTCGTCCAGCCTTAGGTGATTTCTCTGATCATAAAGCTAGACAACCATTGAAGTTCGTTGTGGCATTTGCAGCATTT-------------------------------------------------------------------ACAA--GCCAA------------TACAAA-----AAG--TTGA-----G------TGAA------------------
droRho1	scf7180000780066:73764-73936 +			TTG------CCTA----G-------------TGA----AAT-TAT--TAGTGA--------AA------------A-------------------------G---------AAG-----ACAT-----------C---CA-AGA-CAGTTGCAATTAGTTTCTTTGGTCGTCCAGCCTTAGGTGATTTCTCTGATCATAAAGCTAGACAACCATTGAAGTTCGTTGTGGCATTTGCAACATT--------------------------------------------------------------------ACAA--TTCAA------------TAAAAC-----AAG--TTGA-----G------TGATCCCTAC-ATT--------
droBia1	scf7180000302143:3059645-3059819 -			AAG------CGAA----G-------------TGA----AGT-TAA--AGGTGC--------AA--------------------------------------G--------TGGG-----CCAT-----------C---AA-ACT-CGGTTGCAATTAGTTTCTTTGGTCGTCCAGCCTTAGGTGACTCTTCCGATCATAAAGCTAGACAACCATTGAAGTTCGTTGTGGCATTTGCAGCACT--------------------------------------------------------------------ACAA--GCCA-------------TAAATC-----AAT--TTGA-----G------TGATCCCCAC-GTATCT-----
droTak1	scf7180000415384:84149-84332 +			ATG------CTTA----G-------------TGA----AGT-TAA---AGTTA--------AA-----------GTTAATGT-G-------AAT-------G--------TAGG-----CAAT-----------C---TA-ACT-GGGTTGCAATTAGTTTCTTTGGTCGTCCAGCCTTAGGTGACTCTTCTGATCATAAAGCTAGACAACCATTGAAGTTCGTTGTGGCATTTGCAGCACT--------------------------------------------------------------------ACAA--GCCAG------------TGAATT-----AAG--TTGA-----G------TGATCCCAGC-ATA--------
droEug1	scf7180000409474:2396951-2397111 +			AAG------CTAA----G-------------TGA----A---------AGTTA--------AA------------------------------AAGCAAAAAT---------AA-----AGAT-----------C---TA-AAA-CGGTCGCAATTAGTTTCTTTGGTCGTCCAGCCTTAGGTGACTTTTCTGATCATAAAGCTAGACAACCATTGAAGTTCGTTGTGGCATTTGCAGCACT--------------------------------------------------------------------TCAA--GCC-------------------------AAG--TTAA-----G------TGTTACCA--------------
dm3	chr2R:15548748-15548919 -	dme-mir-4	Known_mirbase	ATG------CTCA----G-------------TAA----AGT-TGC--GAGTGA--------AA------------AT--T--AA-------A----------------------ATA---------------TTA---TG-GAG-CGGTTGCAATTAGTTTCTTTGGTCGTCCAGCCTTAGGTGATTTTTCCGGTCATAAAGCTAGACAACCATTGAAGTTCGTTGTGGCATTAGCAGCACC--------------------------------------------------------------------ACGA--GTCAA------------GAAATT-----ATG--TTAA-----G------TGATCCCCAA------------
droSim2	2r:16196019-16196190 -	dsi-mir-4	Known_mirbase	ATG------CTCA----G-------------TGA----AGT-TGC--AAGTGA--------AA------------CT--T--CA-------A----------------------ATA---------------TTC---TG-TGG-CGGTTGCAATTAGTTTCTTTGGTCGTCCAGCCTTAGGTGACTTTTCCGATCATAAAGCTAGACAACCATTGAAGTTCGTTGTGGCATTAGCAGCACC--------------------------------------------------------------------ACAA--GTCAA------------GAAATC-----AAG--TTAA-----G------TTATCACCAA------------
droSec2	scaffold_1:13063477-13063648 -	dse-mir-4	Known_mirbase	ATG------CTCA----G-------------TGA----AGT-TGC--AAGTGA--------AA------------CT--T--CA-------A----------------------ATA---------------TTC---TG-TGG-CGGTTGCAATTAGTTTCTTTGGTCGTCCAGCCTTAGGTGACTTTTCCGATCATAAAGCTAGACAACCATTGAAGTTCGTTGTGGCATTAGCAGCACC--------------------------------------------------------------------ACAA--GTCAG------------GAAATC-----AAG--TTAA-----G------TGATCCCCAA------------
droYak3	2R:13623869-13624039 +	dya-mir-4	Known_mirbase	ATG------CTCA----G-------------TGA----AGT-TGC--AAGTGA--------AA------------TTAAT--CA-------G----------------------ATA-----------------C---TG-GGG-CAGTTGCAATTAGTTTCTTTGGTCGTCCAGCCTTAGGTGACTTTTCTGATCATAAAGCTAGACAACCATTGAAGTTCGTTGTGGCATTAGCAGCACCATT-----------------------------------------------------------------ACGG--GTCAA------------GAAATC-----GAG--TTAA-----G------TGTTCC----------------
droEre2	scaffold_4845:9749003-9749171 -	der-mir-4	Known_mirbase	ATG------CACAC--TG-------------TGA----AGT-TGC--GAGTGA--------AA------------A-------------------------CA---------AAAGA---------------TAC---TG-TAG-CGGTTGCAATTAGTTTCTTTGGTCGTCCAGCCTTAGGTGACTTTTCTGATCATAAAGCTAGACAACCATTGAAGTTCGTTGTGGCATCAGCAGCACC--------------------------------------------------------------------AAGA--GTTAG------------CAAATC-----CAG--TTAA-----G------TGATCC----------------

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droGri2

ATA------GGCAAC-AG----------------------T-TTT--GGTTAA--------AT------------A-------------------------AT----------------AAATCGATCTATGTTT---TA-TAG-AGGTTGCAATTAGTTTCTTTGGTCGTCCAGCCTTAGGTGATTTCTCTGATCATAAAGCTAGACAACCATTGAAGTTCGTTGTGGCATACGCAGCGATTATATAGTGTA--------------------------T---------------------------A---TAATATTC-----------------------CT-GATA----TA------------------------TGTGTTAA	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
....................................................................................................................................................................................................ATAAAGCTAGACAACCATTGA..........................................................................................................................................................................	21	2	2.00	4	1	3
....................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAA.........................................................................................................................................................................	22	2	1.00	2	1	1
................................................................................................................................................................TCTTTGGTCGTCCAGCCTTAG..............................................................................................................................................................................................................	21	2	0.50	1	0	1
....................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAA........................................................................................................................................................................	23	2	0.50	1	0	1

droVir3

GTA------TATAA--AA--------------AGCACAAGT-TCTCGATTTGA--------TAACCGTCGCAATATATATAT----------AT------A---TATATA----------------TCTATATCA---TA-TAG-AGGTTGCAATTAGTTTCTTTGGTCGTCCAGCCTTAGGTGATTTCTCTGATCATAAAGCTAGACAACCATTGAAGTTCGTTGTGGCATAAGCAGCGGCTATA----------------------------------------------------------------------ATCTG--------ACCATATATATATC----------------------TGATATTCTC-GT--ATACTAT	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells	SRR2096013 Ovary_Strain_9_oxidized	SRR2096014 Ovary_Strain_160_oxidized	SRR2096026 embryo_0-2h from 14 day old Strain 9 mothers	SRR2096038 embryo_0-2h from 14 day old Strain 9 mothers	SRR2096050 embryo_0-2h from 14 day old Strain 160 mothers	SRR2096055 Ovary_Min_43	SRR2096056 Ovary_Min_46	SRR2096057 Ovary_Min_50	SRR2096058 Ovary_Min_98	SRR2096059 Ovary_Min_164	SRR2096060 Ovary_Min_193	SRR2096061 embryo_0-2h from 14 day old Strain 160 mothers	SRR2096072 embryo_0-2h from 15to16 day old dysgenic mothers	SRR2096079 embryo_0-2h from 15to16 day old dysgenic mothers	SRR2096080 embryo_0-2h from 15to16 day old nondysgenic mothers	SRR2096081 embryo_0-2h from 15to16 day old nondysgenic mothers
....................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAA.........................................................................................................................................................................	22	1	18755.00	18755	0	0	3	9860	0	1	0	0	0	0	0	0	8	57	1	0	0	0	1	1	0	3	3	0	2	1	0	2	3	4	0	4	181	1	271	346	973	466	0	2	2	0	23	210	167	167	123	94	142	46	88	33	18	17	10	0	1	0	79	903	26	1	0	2	0	198	199	1622	0	1	0	0	0	0	1259	382	404	139	205
....................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAA........................................................................................................................................................................	23	1	3202.00	3202	0	0	1	1600	0	0	0	0	0	0	0	0	2	13	0	0	0	0	0	0	0	0	0	0	1	1	1	0	0	0	0	1	27	0	42	39	164	76	1	1	0	0	6	73	59	56	50	32	73	21	51	27	18	13	11	0	0	0	32	100	1	1	0	0	2	24	28	215	1	0	0	0	0	0	160	58	60	25	35
....................................................................................................................................................................................................ATAAAGCTAGACAACCATTGA..........................................................................................................................................................................	21	1	3014.00	3014	0	0	3	2030	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	1	0	1	1	2	0	1	1	1	0	1	1	14	0	37	57	82	17	0	0	0	0	0	3	1	8	4	5	5	5	14	4	5	4	5	0	0	0	16	484	14	2	0	0	0	7	10	35	0	0	0	0	0	0	33	36	29	13	21
....................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAG........................................................................................................................................................................	23	1	2797.00	2797	0	1	1	1986	0	0	0	0	0	0	0	0	1	5	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	22	0	26	29	94	46	0	0	0	0	0	26	18	22	25	17	28	16	31	10	6	6	5	0	0	0	30	154	1	0	0	0	0	13	11	57	0	0	0	0	0	0	58	23	13	7	7
....................................................................................................................................................................................................ATAAAGCTAGACAACCATTG...........................................................................................................................................................................	20	1	982.00	982	0	0	1	573	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	2	0	1	0	0	0	2	0	3	4	4	3	0	0	0	0	1	1	2	11	12	10	20	9	26	15	11	12	9	0	0	0	43	64	2	0	0	0	0	9	11	24	0	0	0	0	0	0	21	23	24	11	17
.................................................................................................................................................................CTTTGGTCGTCCAGCCTTAGGTGA..........................................................................................................................................................................................................	24	1	957.00	957	0	0	0	5	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0	1	98	0	32	163	242	358	0	0	0	0	0	3	2	0	0	0	1	0	0	0	0	1	1	0	0	0	0	32	0	0	0	0	0	3	0	4	0	0	0	0	0	0	3	1	1	0	2
....................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAT........................................................................................................................................................................	23	1	604.00	604	0	0	0	259	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	6	1	13	1	0	0	0	0	2	27	19	14	15	19	25	3	8	4	4	1	3	0	1	0	20	21	0	0	0	0	0	8	8	40	0	0	0	0	0	0	35	17	11	10	7
.....................................................................................................................................................................................................TAAAGCTAGACAACCATTGAAG........................................................................................................................................................................	22	1	592.00	592	0	0	0	382	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6	0	5	7	17	14	0	0	0	0	1	8	7	6	2	0	4	2	7	5	4	3	4	0	0	0	9	45	0	0	0	0	0	1	2	16	0	0	0	0	0	0	9	8	7	7	3
....................................................................................................................................................................................................ATAAAGCTAGACAACCA..............................................................................................................................................................................	17	1	455.00	455	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	78	48	41	33	40	58	25	41	26	11	14	7	0	0	0	28	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
................................................................................................................................................................TCTTTGGTCGTCCAGCCTTAGGTGA..........................................................................................................................................................................................................	25	1	330.00	330	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	17	0	18	69	92	79	0	0	0	0	1	3	1	1	0	1	1	1	2	0	0	0	0	0	0	0	0	33	1	0	0	0	0	0	2	2	0	0	0	0	0	0	0	1	0	0	0
.................................................................................................................................................................CTTTGGTCGTCCAGCCTTAGGTG...........................................................................................................................................................................................................	23	1	318.00	318	0	0	0	16	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	19	0	11	23	46	48	0	0	0	0	5	51	40	9	4	5	6	3	9	1	1	1	0	0	0	0	4	9	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	1	2	0	0
....................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAC........................................................................................................................................................................	23	1	277.00	277	0	0	0	91	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	16	7	17	11	9	15	12	12	18	4	7	5	0	0	0	26	7	0	0	0	0	0	2	0	6	1	0	0	0	0	0	5	1	0	1	2
................................................................................................................................................................TCTTTGGTCGTCCAGCCTTAGGTG...........................................................................................................................................................................................................	24	1	275.00	275	0	0	0	14	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	5	30	23	17	0	0	0	0	0	32	16	22	22	5	23	15	18	6	8	3	4	0	0	0	4	4	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................TAAAGCTAGACAACCATTGAAGT.......................................................................................................................................................................	23	1	258.00	258	0	0	0	58	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	1	3	2	1	0	0	0	0	0	14	17	10	6	11	18	6	18	12	18	10	17	0	0	0	7	19	0	0	0	0	0	0	0	2	0	0	0	0	0	0	1	1	2	0	1
....................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAGT.......................................................................................................................................................................	24	1	198.00	198	0	0	0	50	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	1	4	4	1	0	0	1	0	0	17	11	17	3	8	14	10	11	5	3	3	8	0	0	0	8	13	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................ATAAAGCTAGACAACCAT.............................................................................................................................................................................	18	1	149.00	149	0	0	0	66	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	2	0	0	0	0	0	1	8	7	5	9	10	7	3	9	7	3	0	2	0	0	0	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................CTTTGGTCGTCCAGCCTTAGGT............................................................................................................................................................................................................	22	1	132.00	132	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	3	7	14	10	0	0	0	0	1	20	11	5	3	3	4	2	5	2	3	2	1	0	0	0	6	5	0	0	0	0	0	0	4	4	0	0	0	0	0	0	6	0	2	0	0
....................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAC.........................................................................................................................................................................	22	1	125.00	125	0	0	0	67	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	1	0	1	3	0	2	1	2	4	0	1	0	0	0	0	1	1	0	0	0	0	0	3	0	12	0	0	0	0	0	0	24	0	0	0	0
.....................................................................................................................................................................................................TAAAGCTAGACAACCATTGAA.........................................................................................................................................................................	21	1	123.00	123	0	0	0	88	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	4	4	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	6	0	0	0	0	0	0	0	8	0	0	0	0	0	0	3	3	3	0	1
................................................................................................................................................................TCTTTGGTCGTCCAGCCTTAGG.............................................................................................................................................................................................................	22	1	116.00	116	3	2	0	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	5	18	17	17	0	0	0	0	0	6	2	3	0	2	4	1	4	3	6	0	2	0	0	0	5	3	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................CATAAAGCTAGACAACCATTGAA.........................................................................................................................................................................	23	1	97.00	97	0	0	0	84	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	2	4	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	1	0	0	0	1
....................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAAA.......................................................................................................................................................................	24	1	95.00	95	0	0	0	33	0	0	0	0	0	0	0	0	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	1	4	5	2	0	0	0	0	2	4	1	4	3	0	6	3	2	3	1	1	3	0	0	0	1	1	0	0	0	0	0	0	0	3	0	1	0	0	0	0	1	1	2	0	2
.....................................................................................................................................................................................................TAAAGCTAGACAACCATTGAAA........................................................................................................................................................................	22	1	71.00	71	0	0	0	40	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	1	3	0	0	0	0	0	0	3	2	0	0	1	0	0	0	1	0	1	0	0	0	0	0	2	0	0	0	0	0	3	0	4	0	0	0	0	0	0	6	1	1	0	0
................................................................................................................................................................TCTTTGGTCGTCCAGCCTTAGGT............................................................................................................................................................................................................	23	1	52.00	52	0	1	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	1	4	0	0	0	0	0	3	2	5	6	3	4	1	2	1	2	4	0	0	0	0	4	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................TCTTTGGTCGTCCAGCCTTAG..............................................................................................................................................................................................................	21	1	47.00	47	2	3	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	5	4	1	0	1	0	0	0	0	0	0	2	1	4	0	4	1	1	2	0	0	0	0	6	5	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................TAG-AGGTTGCAATTAGTTT..................................................................................................................................................................................................................................	19	1	36.00	36	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	3	0	2	7	6	6	0	0	0	0	4	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	1
......................................................................................................................................................................................................AAAGCTAGACAACCATTGAA.........................................................................................................................................................................	20	1	35.00	35	0	0	0	32	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	1	0	0	0	0
...................................................................................................................................................................................................CATAAAGCTAGACAACCATTGA..........................................................................................................................................................................	22	1	32.00	32	0	0	0	24	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	3	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
.....................................................................................................................................................................................................TAAAGCTAGACAACCATTGAAT........................................................................................................................................................................	22	1	24.00	24	0	0	0	13	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	1	0	0	0	0	0	0	1	2	0	0	0	0	0	0	0	2	0	0	0	0	0	0	1	1	0	1	0
....................................................................................................................................................................................................ATAAAGCTAGACAACCATTGACA........................................................................................................................................................................	23	1	21.00	21	0	0	0	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	3	3	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................CTTTGGTCGTCCAGCCTTAGGTGAA.........................................................................................................................................................................................................	25	1	21.00	21	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	3	5	11	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
....................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAGA.......................................................................................................................................................................	24	1	20.00	20	0	0	0	10	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	1	1	1	1	0	1	1	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................CATAAAGCTAGACAACCATTGAAG........................................................................................................................................................................	24	1	19.00	19	0	0	0	18	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................TAAAGCTAGACAACCATTGA..........................................................................................................................................................................	20	1	19.00	19	0	0	0	17	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAT.........................................................................................................................................................................	22	1	18.00	18	0	0	0	9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	1	0	2	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
...................................................................................................................................................................................................CATAAAGCTAGACAACCATTGAAA........................................................................................................................................................................	24	1	18.00	18	0	0	0	14	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	2	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................CTTTGGTCGTCCAGCCTTAGG.............................................................................................................................................................................................................	21	1	18.00	18	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	2	5	2	0	0	0	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
....................................................................................................................................................................................................ATAAAGCTAGACAACCATT............................................................................................................................................................................	19	1	17.00	17	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	2	1	0	0	0	0	0	1	0	1	0	0	0	1	1	0	1	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0
...........................................................................................................................................A-TAG-AGGTTGCAATTAGTTT..................................................................................................................................................................................................................................	20	1	15.00	15	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	2	7	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	1	0	0	0
.................................................................................................................................................................CTTTGGTCGTCCAGCCTTAGGTC...........................................................................................................................................................................................................	23	1	15.00	15	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	1	8	1	0	1	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................TCTTTGGTCGTCCAGCCTTAGGTC...........................................................................................................................................................................................................	24	1	11.00	11	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	4	1	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAG.........................................................................................................................................................................	22	1	11.00	11	0	0	0	9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................ATAAAGCTAGACAACCAC.............................................................................................................................................................................	18	1	10.00	10	0	0	0	10	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................TAAAGCTAGACAACCATTGAAGC.......................................................................................................................................................................	23	1	9.00	9	0	0	0	9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................TCTTTGGTCGTCCAGCCT.................................................................................................................................................................................................................	18	1	9.00	9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	2	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
................................................................................................................................................................TCTTTGGTCGTCCAGCCTTAGGTGAA.........................................................................................................................................................................................................	26	1	9.00	9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	6	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................GATCATAAAGCTAGACAACCATTGAA.........................................................................................................................................................................	26	1	8.00	8	0	0	0	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................TCATAAAGCTAGACAACCATTGAA.........................................................................................................................................................................	24	1	7.00	7	0	0	0	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................ATAAAGCTAGACAACCATTGACT........................................................................................................................................................................	23	1	7.00	7	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0
................................................................................................................................................................TCTTTGGTCGTCCAGCCTTAGGTGAT.........................................................................................................................................................................................................	26	1	7.00	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	3	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
.....................................................................................................................................................................................................TAAAGCTAGACAACCATTGAAC........................................................................................................................................................................	22	1	7.00	7	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
..................................................................................................................................................................TTTGGTCGTCCAGCCTTAGGTG...........................................................................................................................................................................................................	22	1	6.00	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0	1	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................CTTTGGTCGTCCAGCCTTAGGTGAT.........................................................................................................................................................................................................	25	1	6.00	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAGTT......................................................................................................................................................................	25	1	6.00	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................ATAAAGCTAGACAACCATTGG..........................................................................................................................................................................	21	1	6.00	6	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................TCTTTGGTCGTCCAGCCTTA...............................................................................................................................................................................................................	20	1	6.00	6	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0
.....................................................................................................................................................................................................TAAAGCTAGACAACCATTGAAGA.......................................................................................................................................................................	23	1	5.00	5	0	0	0	2	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................TCTTTGGTCGTCCAGCCTTAGGTCT..........................................................................................................................................................................................................	25	1	5.00	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................AG-AGGTTGCAATTAGTTT..................................................................................................................................................................................................................................	18	1	5.00	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................TA-TAG-AGGTTGCAATTAGTTT..................................................................................................................................................................................................................................	21	1	5.00	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................CTTTGGTCGTCCAGCCTTAGGTGAAA........................................................................................................................................................................................................	26	1	5.00	5	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	2	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................AAAGCTAGACAACCATTGA..........................................................................................................................................................................	19	1	5.00	5	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................TTTGGTCGTCCAGCCTTAGGTGA..........................................................................................................................................................................................................	23	1	5.00	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	2	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................TCTTTGGTCGTCCAGCCTTAGGTGT..........................................................................................................................................................................................................	25	1	5.00	5	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAGC.......................................................................................................................................................................	24	1	5.00	5	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................ATCATAAAGCTAGACAACCATTGAA.........................................................................................................................................................................	25	1	4.00	4	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................ATAAAGCTAGACAACCATTGT..........................................................................................................................................................................	21	1	4.00	4	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................GATCATAAAGCTAGACAACCATTGA..........................................................................................................................................................................	25	1	4.00	4	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................AAAGCTAGACAACCATTGAAG........................................................................................................................................................................	21	1	4.00	4	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................CTTTGGTCGTCCAGCCTTAGGTGATTTCTCTGATC...............................................................................................................................................................................................	35	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................CATAAAGCTAGACAACCATTG...........................................................................................................................................................................	21	1	4.00	4	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................CTTTGGTCGTCCAGCCTTAG..............................................................................................................................................................................................................	20	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAACA.......................................................................................................................................................................	24	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................AAGCTAGACAACCATTGAA.........................................................................................................................................................................	19	1	4.00	4	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAAC.......................................................................................................................................................................	24	1	4.00	4	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAATC.......................................................................................................................................................................	24	1	4.00	4	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................TAAAGCTAGACAACCATTGAAGAA......................................................................................................................................................................	24	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................AAAGCTAGACAACCATTGAAA........................................................................................................................................................................	21	1	3.00	3	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................AAGCTAGACAACCATTGA..........................................................................................................................................................................	18	1	3.00	3	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................CTTTGGTCGTCCAGCCT.................................................................................................................................................................................................................	17	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................ATAAAGCTAGACAACCATTGACC........................................................................................................................................................................	23	1	3.00	3	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0
.......................................................................................................................................................................................................AAGCTAGACAACCATTGAAGTT......................................................................................................................................................................	22	1	3.00	3	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................TCTTTGGTCGTCCAGCCTTAGGTT...........................................................................................................................................................................................................	24	1	3.00	3	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

AAT------TTCAAT-TA-------------TAA----AAT-TTC--TAGTGC--------AT------------G--GTT-CAAACTTAAA-AAGAAAA-CA---------AAA-----------TCTATATCG---TA-TAG-AGGTTGCAATTAGTTTCTTTGGTCGTCCAGCCTTAGGTGATTTCTCTGATCATAAAGCTAGACAACCATTGAAGTTCGTTGTGGCATAAGCAGCGCCTATATATAATA--------------------------TATATATATACATCTATGAAAAGTTTTTATGAAA---------------------------------------------GTTCAAAAT----GCAA------------	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
....................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAA.........................................................................................................................................................................	22	1	144666.00	144666	10	2689	2	5	141958	2
....................................................................................................................................................................................................ATAAAGCTAGACAACCATTGA..........................................................................................................................................................................	21	1	49844.00	49844	3	2712	1	5	47121	2
....................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAG........................................................................................................................................................................	23	1	44021.00	44021	0	1733	0	0	42288	0
....................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAA........................................................................................................................................................................	23	1	17180.00	17180	0	388	0	0	16792	0
.....................................................................................................................................................................................................TAAAGCTAGACAACCATTGAAG........................................................................................................................................................................	22	1	9277.00	9277	2	513	0	0	8762	0
....................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAT........................................................................................................................................................................	23	1	5791.00	5791	0	108	0	0	5683	0
....................................................................................................................................................................................................ATAAAGCTAGACAACCATTG...........................................................................................................................................................................	20	1	5554.00	5554	2	210	0	1	5340	1
.....................................................................................................................................................................................................TAAAGCTAGACAACCATTGAAGT.......................................................................................................................................................................	23	1	2097.00	2097	0	127	0	0	1969	1
....................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAGT.......................................................................................................................................................................	24	1	1485.00	1485	0	62	0	1	1422	0
....................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAC.........................................................................................................................................................................	22	1	1470.00	1470	0	14	0	0	1456	0
...................................................................................................................................................................................................CATAAAGCTAGACAACCATTGAA.........................................................................................................................................................................	23	1	1316.00	1316	0	3	0	0	1313	0
.....................................................................................................................................................................................................TAAAGCTAGACAACCATTGAA.........................................................................................................................................................................	21	1	1294.00	1294	0	24	0	0	1270	0
....................................................................................................................................................................................................ATAAAGCTAGACAACCAT.............................................................................................................................................................................	18	1	1163.00	1163	0	0	0	0	1163	0
....................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAC........................................................................................................................................................................	23	1	1056.00	1056	0	10	0	0	1046	0
...................................................................................................................................................................................................CATAAAGCTAGACAACCATTGA..........................................................................................................................................................................	22	1	549.00	549	0	8	0	0	541	0
................................................................................................................................................................TCTTTGGTCGTCCAGCCTTAGG.............................................................................................................................................................................................................	22	1	546.00	546	1	64	0	0	481	0
.....................................................................................................................................................................................................TAAAGCTAGACAACCATTGAAA........................................................................................................................................................................	22	1	544.00	544	0	17	0	0	527	0
....................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAAA.......................................................................................................................................................................	24	1	437.00	437	0	4	0	0	433	0
....................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAT.........................................................................................................................................................................	22	1	430.00	430	0	28	0	0	402	0
......................................................................................................................................................................................................AAAGCTAGACAACCATTGAA.........................................................................................................................................................................	20	1	396.00	396	0	1	0	0	395	0
...................................................................................................................................................................................................CATAAAGCTAGACAACCATTGAAG........................................................................................................................................................................	24	1	328.00	328	0	2	0	0	326	0
.....................................................................................................................................................................................................TAAAGCTAGACAACCATTGA..........................................................................................................................................................................	20	1	294.00	294	0	3	0	0	291	0
.....................................................................................................................................................................................................TAAAGCTAGACAACCATTGAAGC.......................................................................................................................................................................	23	1	218.00	218	0	0	0	0	218	0
.....................................................................................................................................................................................................TAAAGCTAGACAACCATTGAAT........................................................................................................................................................................	22	1	210.00	210	0	4	0	0	206	0
................................................................................................................................................................TCTTTGGTCGTCCAGCCTTAGGTG...........................................................................................................................................................................................................	24	1	209.00	209	0	33	0	0	175	1
.................................................................................................................................................................CTTTGGTCGTCCAGCCTTAGGTGA..........................................................................................................................................................................................................	24	1	202.00	202	0	120	0	0	82	0
....................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAGC.......................................................................................................................................................................	24	1	170.00	170	0	1	0	0	169	0
...................................................................................................................................................................................................CATAAAGCTAGACAACCATTGAAA........................................................................................................................................................................	24	1	155.00	155	0	1	0	0	154	0
....................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAGA.......................................................................................................................................................................	24	1	151.00	151	0	2	0	0	149	0
......................................................................................................................................................................................................AAAGCTAGACAACCATTGAAG........................................................................................................................................................................	21	1	150.00	150	0	0	0	0	150	0
................................................................................................................................................................TCTTTGGTCGTCCAGCCTTAGGT............................................................................................................................................................................................................	23	1	149.00	149	0	31	0	0	118	0
................................................................................................................................................................TCTTTGGTCGTCCAGCCTTAGGTGA..........................................................................................................................................................................................................	25	1	143.00	143	0	79	0	0	64	0
....................................................................................................................................................................................................ATAAAGCTAGACAACCAC.............................................................................................................................................................................	18	2	132.50	265	0	0	0	0	265	0
.................................................................................................................................................................CTTTGGTCGTCCAGCCTTAGGTG...........................................................................................................................................................................................................	23	1	131.00	131	0	6	0	0	125	0
....................................................................................................................................................................................................ATAAAGCTAGACAACCATT............................................................................................................................................................................	19	1	124.00	124	0	8	0	0	116	0
.....................................................................................................................................................................................................TAAAGCTAGACAACCATTGAAC........................................................................................................................................................................	22	1	122.00	122	0	0	0	0	122	0
......................................................................................................................................................................................................AAAGCTAGACAACCATTGA..........................................................................................................................................................................	19	1	114.00	114	0	0	0	0	114	0
...................................................................................................................................................................................................CATAAAGCTAGACAACCATTGAT.........................................................................................................................................................................	23	1	105.00	105	0	5	0	0	100	0
....................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAG.........................................................................................................................................................................	22	1	101.00	101	0	10	0	0	91	0
................................................................................................................................................................TCTTTGGTCGTCCAGCCTTAG..............................................................................................................................................................................................................	21	1	93.00	93	1	29	0	0	63	0
....................................................................................................................................................................................................ATAAAGCTAGACAACCATTGACA........................................................................................................................................................................	23	1	84.00	84	0	5	0	0	79	0
..................................................................................................................................................................................................TCATAAAGCTAGACAACCATTGAA.........................................................................................................................................................................	24	1	83.00	83	0	2	0	0	81	0
...................................................................................................................................................................................................CATAAAGCTAGACAACCATTGAC.........................................................................................................................................................................	23	1	74.00	74	0	0	0	0	74	0
................................................................................................................................................................................................GATCATAAAGCTAGACAACCATTGAA.........................................................................................................................................................................	26	1	72.00	72	0	0	0	0	72	0
.................................................................................................................................................................CTTTGGTCGTCCAGCCTTAGGT............................................................................................................................................................................................................	22	1	70.00	70	0	12	0	0	58	0
....................................................................................................................................................................................................ATAAAGCTAGACAACCATTGG..........................................................................................................................................................................	21	1	66.00	66	0	6	0	0	60	0
.......................................................................................................................................................................................................AAGCTAGACAACCATTGAA.........................................................................................................................................................................	19	1	61.00	61	0	0	0	0	61	0
....................................................................................................................................................................................................ATAAAGCTAGACAACCATTGACT........................................................................................................................................................................	23	1	50.00	50	0	0	0	0	50	0
.....................................................................................................................................................................................................TAAAGCTAGACAACCATTGAAGA.......................................................................................................................................................................	23	1	49.00	49	0	1	0	0	48	0
...................................................................................................................................................................................................CATAAAGCTAGACAACCATTGAAT........................................................................................................................................................................	24	1	48.00	48	0	2	0	0	46	0
..................................................................................................................................................................................................TCATAAAGCTAGACAACCATTGA..........................................................................................................................................................................	23	1	48.00	48	0	0	0	0	48	0
.................................................................................................................................................................................................ATCATAAAGCTAGACAACCATTGAA.........................................................................................................................................................................	25	1	45.00	45	0	1	0	0	44	0
......................................................................................................................................................................................................AAAGCTAGACAACCATTGAAA........................................................................................................................................................................	21	1	42.00	42	0	0	0	0	42	0
...................................................................................................................................................................................................CATAAAGCTAGACAACCATTG...........................................................................................................................................................................	21	1	42.00	42	0	2	0	0	40	0
................................................................................................................................................................................................GATCATAAAGCTAGACAACCATTGA..........................................................................................................................................................................	25	1	41.00	41	0	0	0	0	41	0
.......................................................................................................................................................................................................AAGCTAGACAACCATTGAAG........................................................................................................................................................................	20	1	41.00	41	0	1	0	0	40	0
....................................................................................................................................................................................................ATAAAGCTAGACAACCATTGATT........................................................................................................................................................................	23	1	41.00	41	0	1	0	0	40	0
................................................................................................................................................................TCTTTGGTCGTCCAGCCTTAGGC............................................................................................................................................................................................................	23	1	40.00	40	0	0	0	0	40	0
......................................................................................................................................................................................................AAAGCTAGACAACCATTGAAGT.......................................................................................................................................................................	22	1	31.00	31	0	1	0	0	30	0
................................................................................................................................................................................................GATCATAAAGCTAGACAACCATTGAAG........................................................................................................................................................................	27	1	29.00	29	0	0	0	0	29	0
....................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAGTT......................................................................................................................................................................	25	1	28.00	28	0	0	0	0	28	0
....................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAATC.......................................................................................................................................................................	24	1	28.00	28	0	0	0	0	28	0
.....................................................................................................................................................................................................TAAAGCTAGACAACCATTGAAGTT......................................................................................................................................................................	24	1	25.00	25	0	1	0	0	24	0
.......................................................................................................................................................................................................AAGCTAGACAACCATTGA..........................................................................................................................................................................	18	1	24.00	24	0	0	0	0	24	0
.........................................................................................................................................................................................................GCTAGACAACCATTGAAG........................................................................................................................................................................	18	1	24.00	24	0	0	0	0	24	0
.................................................................................................................................................................CTTTGGTCGTCCAGCCTTAGG.............................................................................................................................................................................................................	21	1	23.00	23	0	2	0	0	21	0
....................................................................................................................................................................................................ATAAAGCTAGACAACCATTGT..........................................................................................................................................................................	21	1	22.00	22	0	4	0	0	18	0
....................................................................................................................................................................................................ATAAAGCTAGACAACCATTGC..........................................................................................................................................................................	21	1	22.00	22	0	17	0	0	5	0
..................................................................................................................................................................................................TCATAAAGCTAGACAACCATTGAAG........................................................................................................................................................................	25	1	21.00	21	0	0	0	0	21	0

droWil2

AAG------CAA--C-AA-------------CCA----ACA-AGC--TAGTGAGAAGAATTAA------------CT--T--TA-------A------------------------------------------CCAAA--TGGCGGGTTGCAATTAGTTTCTTTGGTCGTCCAGCCTTAGGTGATTTCTCTGATCATAAAGCTAGACAACCATTGAAGTTCGTTGTGGCATTATCGCCAGT--------------------------------------------------------------------T-------TAAG-----------GACATC-----AA---TA--GCAAAGTTCAAGTT----TCAT------------	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
....................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAA.........................................................................................................................................................................	22	1	47107.00	47107	0	297	1	46590	219
....................................................................................................................................................................................................ATAAAGCTAGACAACCATTGA..........................................................................................................................................................................	21	1	27809.00	27809	0	149	1	27479	180
....................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAA........................................................................................................................................................................	23	1	10791.00	10791	0	35	0	10735	21
....................................................................................................................................................................................................ATAAAGCTAGACAACCATTG...........................................................................................................................................................................	20	1	1716.00	1716	0	10	0	1687	19
....................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAT........................................................................................................................................................................	23	1	596.00	596	0	2	0	593	1
....................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAG........................................................................................................................................................................	23	1	538.00	538	0	4	0	533	1
.................................................................................................................................................................CTTTGGTCGTCCAGCCTTAGGTGA..........................................................................................................................................................................................................	24	1	496.00	496	0	0	0	495	1
....................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAAA.......................................................................................................................................................................	24	1	280.00	280	0	0	0	280	0
.....................................................................................................................................................................................................TAAAGCTAGACAACCATTGAAA........................................................................................................................................................................	22	1	238.00	238	0	0	0	237	1
.....................................................................................................................................................................................................TAAAGCTAGACAACCATTGAA.........................................................................................................................................................................	21	1	171.00	171	0	9	0	160	2
.................................................................................................................................................................CTTTGGTCGTCCAGCCTTAGGT............................................................................................................................................................................................................	22	1	169.00	169	0	0	0	169	0
....................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAC........................................................................................................................................................................	23	1	167.00	167	1	0	0	166	0
....................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAT.........................................................................................................................................................................	22	1	140.00	140	0	0	0	139	1
...................................................................................................................................................................................................CATAAAGCTAGACAACCATTGA..........................................................................................................................................................................	22	1	113.00	113	0	1	0	112	0
.....................................................................................................................................................................................................TAAAGCTAGACAACCATTGAAG........................................................................................................................................................................	22	1	74.00	74	0	0	0	61	13
.................................................................................................................................................................CTTTGGTCGTCCAGCCTTAGGTG...........................................................................................................................................................................................................	23	1	54.00	54	0	0	0	54	0
.....................................................................................................................................................................................................TAAAGCTAGACAACCATTGA..........................................................................................................................................................................	20	1	50.00	50	0	4	0	46	0
....................................................................................................................................................................................................ATAAAGCTAGACAACCATT............................................................................................................................................................................	19	1	43.00	43	0	1	0	41	1
....................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAG.........................................................................................................................................................................	22	1	40.00	40	0	0	0	40	0
...................................................................................................................................................................................................CATAAAGCTAGACAACCATTGAA.........................................................................................................................................................................	23	1	37.00	37	0	1	0	36	0
.....................................................................................................................................................................................................TAAAGCTAGACAACCATTGAAGT.......................................................................................................................................................................	23	1	30.00	30	0	2	0	28	0
....................................................................................................................................................................................................ATAAAGCTAGACAACCATTGC..........................................................................................................................................................................	21	1	28.00	28	0	0	0	28	0
.................................................................................................................................................................CTTTGGTCGTCCAGCCTTAGG.............................................................................................................................................................................................................	21	1	27.00	27	0	0	0	27	0
....................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAC.........................................................................................................................................................................	22	1	25.00	25	0	0	0	25	0
...................................................................................................................................................................................................CATAAAGCTAGACAACCATTGAT.........................................................................................................................................................................	23	1	23.00	23	0	0	0	23	0
.....................................................................................................................................................................................................TAAAGCTAGACAACCATTGAAT........................................................................................................................................................................	22	1	21.00	21	0	0	0	21	0
..................................................................................................................................................................TTTGGTCGTCCAGCCTTAGGTGA..........................................................................................................................................................................................................	23	1	21.00	21	0	1	0	20	0
....................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAGT.......................................................................................................................................................................	24	1	18.00	18	0	0	0	18	0
....................................................................................................................................................................................................ATAAAGCTAGACAACCATTGG..........................................................................................................................................................................	21	1	18.00	18	0	0	0	18	0
..................................................................................................................................................................................................TCATAAAGCTAGACAACCATTGA..........................................................................................................................................................................	23	1	16.00	16	0	1	0	15	0
.................................................................................................................................................................CTTTGGTCGTCCAGCCTTAGGTGAT.........................................................................................................................................................................................................	25	1	16.00	16	0	0	0	16	0
.................................................................................................................................................................CTTTGGTCGTCCAGCCTTAG..............................................................................................................................................................................................................	20	1	14.00	14	0	0	0	13	1
...................................................................................................................................................................................................CATAAAGCTAGACAACCATTG...........................................................................................................................................................................	21	1	13.00	13	0	0	0	13	0
......................................................................................................................................................................................................AAAGCTAGACAACCATTGAA.........................................................................................................................................................................	20	1	13.00	13	0	2	0	11	0
..........................................................................................................................................................................................................................GTTCGTTGTGGCATTATCGCCA...................................................................................................................................................	22	1	10.00	10	0	0	0	10	0
...................................................................................................................................................................................................CATAAAGCTAGACAACCATTGAAA........................................................................................................................................................................	24	1	10.00	10	0	1	0	9	0
.....................................................................................................................................................................................................TAAAGCTAGACAACCATTGAAAA.......................................................................................................................................................................	23	1	9.00	9	0	0	0	9	0
....................................................................................................................................................................................................ATAAAGCTAGACAACCAT.............................................................................................................................................................................	18	1	8.00	8	0	0	0	8	0
......................................................................................................................................................................................................AAAGCTAGACAACCATTGA..........................................................................................................................................................................	19	1	8.00	8	0	0	0	8	0
....................................................................................................................................................................................................ATAAAGCTAGACAACCATTA...........................................................................................................................................................................	20	1	8.00	8	0	0	0	8	0
....................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAGA........................................................................................................................................................................	23	1	7.00	7	0	0	0	7	0
...........................................................................................................................................................TAGTTTCTTTGGTCGTCCAGC...................................................................................................................................................................................................................	21	1	7.00	7	0	0	0	7	0
....................................................................................................................................................................................................ATAAAGCTAGACAACCATTGT..........................................................................................................................................................................	21	1	7.00	7	0	0	0	6	1
.............................................................................................................................................TGGCGGGTTGCAATTAGTTT..................................................................................................................................................................................................................................	20	1	7.00	7	0	0	0	7	0
....................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAAAA......................................................................................................................................................................	25	1	7.00	7	0	0	0	7	0
.................................................................................................................................................................CTTTGGTCGTCCAGCCTTAGGTGT..........................................................................................................................................................................................................	24	1	5.00	5	0	0	0	5	0
.......................................................................................................................................................................................................AAGCTAGACAACCATTGAA.........................................................................................................................................................................	19	1	5.00	5	0	0	0	5	0
................................................................................................................................................................TCTTTGGTCGTCCAGCCTTAGG.............................................................................................................................................................................................................	22	1	5.00	5	0	1	0	4	0
................................................................................................................................................................TCTTTGGTCGTCCAGCCTTAGGTGA..........................................................................................................................................................................................................	25	1	5.00	5	0	0	0	5	0
....................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAAG.......................................................................................................................................................................	24	1	4.00	4	0	0	0	4	0
................................................................................................................................................................TCTTTGGTCGTCCAGCCTTAG..............................................................................................................................................................................................................	21	1	4.00	4	0	1	0	3	0
..................................................................................................................................................................TTTGGTCGTCCAGCCTTAGGTG...........................................................................................................................................................................................................	22	1	4.00	4	0	0	0	4	0
....................................................................................................................................................................................................ATAAAGCTAGACAACCATTT...........................................................................................................................................................................	20	1	4.00	4	0	0	0	4	0
.......................................................................................................................................................................................................AAGCTAGACAACCATTGA..........................................................................................................................................................................	18	1	4.00	4	0	0	0	4	0
...................................................................................................................................................................TTGGTCGTCCAGCCTTAGGTGA..........................................................................................................................................................................................................	22	1	4.00	4	0	0	0	4	0
....................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAGA.......................................................................................................................................................................	24	1	4.00	4	0	0	0	4	0
................................................................................................................................................................TCTTTGGTCGTCCAGCCTTAGGTG...........................................................................................................................................................................................................	24	1	3.00	3	0	1	0	2	0
....................................................................................................................................................................................................ATAAAGCTAGACAACCATGA...........................................................................................................................................................................	20	1	3.00	3	0	0	0	3	0
.................................................................................................................................................................CTTTGGTCGTCCAGCCTTAGGTGAA.........................................................................................................................................................................................................	25	1	3.00	3	0	0	0	3	0
..........................................................................................................................................................................................................CTAGACAACCATTGAAGTTCGT...................................................................................................................................................................	22	1	3.00	3	0	0	0	3	0
..................................................................................................................................................................................................TCATAAAGCTAGACAACCATTGAA.........................................................................................................................................................................	24	1	3.00	3	0	0	0	3	0
..................................................................................................................................................................................................TCATAAAGCTAGACAACCATTG...........................................................................................................................................................................	22	1	3.00	3	0	0	0	3	0
...........................................................................................................................................................TAGTTTCTTTGGTCGTCCAGCC..................................................................................................................................................................................................................	22	1	3.00	3	1	0	0	2	0
..................................................................................................................................................................................................TCATAAAGCTAGACAACCATT............................................................................................................................................................................	21	1	3.00	3	0	0	0	3	0
....................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAAC.......................................................................................................................................................................	24	1	2.00	2	0	0	0	2	0
.................................................................................................................................................................CTTTGGTCGTCCAGCCTTAGGC............................................................................................................................................................................................................	22	1	2.00	2	0	0	0	2	0
..........................................................................................................................................A--TGGCGGGTTGCAATTAGTTT..................................................................................................................................................................................................................................	21	1	2.00	2	0	0	0	2	0
....................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAGTT......................................................................................................................................................................	25	1	2.00	2	0	0	0	2	0
.................................................................................................................................................................................................ATCATAAAGCTAGACAACCATTGAA.........................................................................................................................................................................	25	1	2.00	2	0	0	0	2	0
.......................................................................................................................................................................TCGTCCAGCCTTAGGTGA..........................................................................................................................................................................................................	18	1	2.00	2	0	0	0	2	0
.......................................................................................................................................................................................................AAGCTAGACAACCATTGAAGT.......................................................................................................................................................................	21	1	2.00	2	0	0	0	2	0
.....................................................................................................................................................................................................TAAAGCTAGACAACCATTG...........................................................................................................................................................................	19	1	2.00	2	0	0	0	2	0
......................................................................................................................................................................................................AAAGCTAGACAACCATTGAAA........................................................................................................................................................................	21	1	2.00	2	0	0	0	2	0
..................................................................................................................................................................TTTGGTCGTCCAGCCTTAGGT............................................................................................................................................................................................................	21	1	2.00	2	0	0	0	2	0
.....................................................................................................................................................................................................TAAAGCTAGACAACCATTGAAC........................................................................................................................................................................	22	1	2.00	2	0	0	0	2	0
....................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAATA.......................................................................................................................................................................	24	1	1.00	1	0	0	0	1	0
....................................................................................................................................................................................................ATAAAGCTAGACAACCATTGACA........................................................................................................................................................................	23	1	1.00	1	0	0	0	1	0

dp5

ATG------GCCAACCAG-------------TGACGAAAGT-GACAAAAGTGA--------AAAAAGTGACAAAGTTTGTGT----------AC------ACTCCACGAGTTG-AT---------------ACCT---TA-TTG-TGGTTGCAATTAGTTTCTTTGGTCGTCCAGCCTTAGGTGATTTCTCTGATCATAAAGCTAGACAACCATTGAAGTTCGTTGTGGCATTTGCAGCACT-ACCTACCACAACCACACCCACACCA------ACACCC---------------------------A---CACCCACC-----------------------CT-CACA----TC------------------------CATCCCAG	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
....................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAA.........................................................................................................................................................................	22	1	45829.00	45829	0	1301	40503	24	3994	0	3	0	4	0
....................................................................................................................................................................................................ATAAAGCTAGACAACCATTGA..........................................................................................................................................................................	21	1	11063.00	11063	0	633	8361	6	2063	0	0	0	0	0
....................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAA........................................................................................................................................................................	23	1	5556.00	5556	0	94	5109	1	352	0	0	0	0	0
....................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAG........................................................................................................................................................................	23	1	4487.00	4487	0	114	3732	5	636	0	0	0	0	0
....................................................................................................................................................................................................ATAAAGCTAGACAACCATTG...........................................................................................................................................................................	20	1	1573.00	1573	0	100	1247	0	225	0	0	0	0	1
.....................................................................................................................................................................................................TAAAGCTAGACAACCATTGAAG........................................................................................................................................................................	22	1	1166.00	1166	0	23	914	2	227	0	0	0	0	0
....................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAT........................................................................................................................................................................	23	1	822.00	822	0	23	732	0	67	0	0	0	0	0
....................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAC........................................................................................................................................................................	23	1	546.00	546	0	9	509	0	28	0	0	0	0	0
....................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAC.........................................................................................................................................................................	22	1	523.00	523	0	0	513	0	10	0	0	0	0	0
.....................................................................................................................................................................................................TAAAGCTAGACAACCATTGAA.........................................................................................................................................................................	21	1	335.00	335	0	56	255	0	24	0	0	0	0	0
.....................................................................................................................................................................................................TAAAGCTAGACAACCATTGAAGT.......................................................................................................................................................................	23	1	334.00	334	0	6	223	0	105	0	0	0	0	0
....................................................................................................................................................................................................ATAAAGCTAGACAACCAT.............................................................................................................................................................................	18	1	313.00	313	0	0	313	0	0	0	0	0	0	0
...................................................................................................................................................................................................CATAAAGCTAGACAACCATTGAA.........................................................................................................................................................................	23	1	264.00	264	0	2	259	0	3	0	0	0	0	0
.................................................................................................................................................................CTTTGGTCGTCCAGCCTTAGGTGA..........................................................................................................................................................................................................	24	1	254.00	254	0	13	19	0	222	0	0	0	0	0
....................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAGT.......................................................................................................................................................................	24	1	215.00	215	0	3	146	0	66	0	0	0	0	0
.....................................................................................................................................................................................................TAAAGCTAGACAACCATTGAAA........................................................................................................................................................................	22	1	142.00	142	0	2	134	0	6	0	0	0	0	0
....................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAAA.......................................................................................................................................................................	24	1	102.00	102	0	3	97	0	2	0	0	0	0	0
................................................................................................................................................................TCTTTGGTCGTCCAGCCTTAGG.............................................................................................................................................................................................................	22	1	82.00	82	0	20	30	0	32	0	0	0	0	0
...................................................................................................................................................................................................CATAAAGCTAGACAACCATTGA..........................................................................................................................................................................	22	1	81.00	81	0	4	72	1	4	0	0	0	0	0
................................................................................................................................................................TCTTTGGTCGTCCAGCCTTAGGTGA..........................................................................................................................................................................................................	25	1	75.00	75	0	6	11	0	58	0	0	0	0	0
.................................................................................................................................................................CTTTGGTCGTCCAGCCTTAGGTG...........................................................................................................................................................................................................	23	1	71.00	71	0	2	47	0	21	0	0	0	1	0
....................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAT.........................................................................................................................................................................	22	1	65.00	65	0	0	45	0	20	0	0	0	0	0
.....................................................................................................................................................................................................TAAAGCTAGACAACCATTGA..........................................................................................................................................................................	20	1	61.00	61	0	34	19	0	8	0	0	0	0	0
......................................................................................................................................................................................................AAAGCTAGACAACCATTGAA.........................................................................................................................................................................	20	1	57.00	57	0	2	54	0	1	0	0	0	0	0
.................................................................................................................................................................CTTTGGTCGTCCAGCCTTAGGT............................................................................................................................................................................................................	22	1	53.00	53	0	2	22	0	29	0	0	0	0	0
.....................................................................................................................................................................................................TAAAGCTAGACAACCATTGAAC........................................................................................................................................................................	22	1	48.00	48	0	2	43	0	3	0	0	0	0	0
.....................................................................................................................................................................................................TAAAGCTAGACAACCATTGAAGC.......................................................................................................................................................................	23	1	47.00	47	0	0	44	0	3	0	0	0	0	0
.....................................................................................................................................................................................................TAAAGCTAGACAACCATTGAAT........................................................................................................................................................................	22	1	47.00	47	0	1	40	0	6	0	0	0	0	0
....................................................................................................................................................................................................ATAAAGCTAGACAACCAC.............................................................................................................................................................................	18	2	42.50	85	0	0	85	0	0	0	0	0	0	0
...................................................................................................................................................................................................CATAAAGCTAGACAACCATTGAAA........................................................................................................................................................................	24	1	42.00	42	0	0	42	0	0	0	0	0	0	0
....................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAG.........................................................................................................................................................................	22	1	39.00	39	0	1	30	0	8	0	0	0	0	0
....................................................................................................................................................................................................ATAAAGCTAGACAACCATT............................................................................................................................................................................	19	1	37.00	37	0	5	25	0	7	0	0	0	0	0
................................................................................................................................................................TCTTTGGTCGTCCAGCCTTAG..............................................................................................................................................................................................................	21	1	33.00	33	0	7	2	0	24	0	0	0	0	0
....................................................................................................................................................................................................ATAAAGCTAGACAACCATTGT..........................................................................................................................................................................	21	1	32.00	32	0	1	12	0	19	0	0	0	0	0
....................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAGA.......................................................................................................................................................................	24	1	27.00	27	0	2	24	0	1	0	0	0	0	0
.....................................................................................................................................................................................................TAAAGCTAGACAACCATTGAAGA.......................................................................................................................................................................	23	1	26.00	26	0	0	23	0	3	0	0	0	0	0
....................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAGC.......................................................................................................................................................................	24	1	26.00	26	0	0	25	1	0	0	0	0	0	0
................................................................................................................................................................TCTTTGGTCGTCCAGCCTTAGGT............................................................................................................................................................................................................	23	1	24.00	24	0	2	8	0	14	0	0	0	0	0
....................................................................................................................................................................................................ATAAAGCTAGACAACCATTGG..........................................................................................................................................................................	21	1	23.00	23	0	0	14	0	9	0	0	0	0	0
....................................................................................................................................................................................................ATAAAGCTAGACAACCATTGACA........................................................................................................................................................................	23	1	22.00	22	0	0	18	0	4	0	0	0	0	0
................................................................................................................................................................TCTTTGGTCGTCCAGCCTTAGGTG...........................................................................................................................................................................................................	24	1	21.00	21	0	4	9	0	8	0	0	0	0	0
.................................................................................................................................................................CTTTGGTCGTCCAGCCTTAGG.............................................................................................................................................................................................................	21	1	20.00	20	0	5	9	0	6	0	0	0	0	0
...................................................................................................................................................................................................CATAAAGCTAGACAACCATTGAC.........................................................................................................................................................................	23	1	15.00	15	0	0	15	0	0	0	0	0	0	0
......................................................................................................................................................................................................AAAGCTAGACAACCATTGAAGT.......................................................................................................................................................................	22	1	13.00	13	0	0	9	0	4	0	0	0	0	0
......................................................................................................................................................................................................AAAGCTAGACAACCATTGA..........................................................................................................................................................................	19	1	13.00	13	0	3	10	0	0	0	0	0	0	0
......................................................................................................................................................................................................AAAGCTAGACAACCATTGAAG........................................................................................................................................................................	21	1	13.00	13	0	1	11	0	1	0	0	0	0	0
...................................................................................................................................................................................................CATAAAGCTAGACAACCATTGAT.........................................................................................................................................................................	23	1	13.00	13	0	0	12	0	1	0	0	0	0	0
....................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAAC.......................................................................................................................................................................	24	1	12.00	12	0	0	12	0	0	0	0	0	0	0
..................................................................................................................................................................................................TCATAAAGCTAGACAACCATTGAA.........................................................................................................................................................................	24	1	11.00	11	0	0	11	0	0	0	0	0	0	0
.................................................................................................................................................................................................ATCATAAAGCTAGACAACCATTGAA.........................................................................................................................................................................	25	1	11.00	11	0	0	11	0	0	0	0	0	0	0
...................................................................................................................................................................................................CATAAAGCTAGACAACCATTGAAG........................................................................................................................................................................	24	1	10.00	10	0	0	10	0	0	0	0	0	0	0
..................................................................................................................................................................................................TCATAAAGCTAGACAACCATTGA..........................................................................................................................................................................	23	1	10.00	10	0	0	10	0	0	0	0	0	0	0
.......................................................................................................................................................................................................AAGCTAGACAACCATTGAA.........................................................................................................................................................................	19	1	8.00	8	0	2	4	0	2	0	0	0	0	0
...................................................................................................................................................................................................CATAAAGCTAGACAACCATTG...........................................................................................................................................................................	21	1	8.00	8	0	0	7	0	1	0	0	0	0	0
................................................................................................................................................................................................GATCATAAAGCTAGACAACCATTGAA.........................................................................................................................................................................	26	1	8.00	8	0	0	8	0	0	0	0	0	0	0
.................................................................................................................................................................CTTTGGTCGTCCAGCCTTAG..............................................................................................................................................................................................................	20	1	8.00	8	0	2	0	0	3	0	1	0	2	0
..................................................................................................................................................................TTTGGTCGTCCAGCCTTAGGTGA..........................................................................................................................................................................................................	23	1	6.00	6	0	0	0	0	6	0	0	0	0	0
....................................................................................................................................................................................................ATAAAGCTAGACAACCATTGC..........................................................................................................................................................................	21	1	6.00	6	0	0	2	0	4	0	0	0	0	0
.............................................................................................................................................TTG-TGGTTGCAATTAGTTT..................................................................................................................................................................................................................................	19	1	6.00	6	0	0	1	0	5	0	0	0	0	0
....................................................................................................................................................................................................ATAAAGCTAGACAACCATTGACT........................................................................................................................................................................	23	1	6.00	6	0	0	6	0	0	0	0	0	0	0
....................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAACC.......................................................................................................................................................................	24	1	5.00	5	0	0	5	0	0	0	0	0	0	0
.....................................................................................................................................................................................................TAAAGCTAGACAACCATTGAAGTT......................................................................................................................................................................	24	1	5.00	5	0	0	5	0	0	0	0	0	0	0
.................................................................................................................................................................CTTTGGTCGTCCAGCCTTAGGTGAT.........................................................................................................................................................................................................	25	1	5.00	5	0	0	4	0	1	0	0	0	0	0
.....................................................................................................................................................................................................TAAAGCTAGACAACCATTGAAAA.......................................................................................................................................................................	23	1	5.00	5	0	0	5	0	0	0	0	0	0	0
....................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAACA.......................................................................................................................................................................	24	1	5.00	5	0	0	3	0	2	0	0	0	0	0
....................................................................................................................................................................................................ATAAAGCTAGACAACCATTGATA........................................................................................................................................................................	23	1	5.00	5	0	0	2	0	3	0	0	0	0	0
.......................................................................................................................................................................................................AAGCTAGACAACCATTGAAGTT......................................................................................................................................................................	22	1	5.00	5	0	0	5	0	0	0	0	0	0	0
....................................................................................................................................................................................................ATAAAGCTAGACAACCATTC...........................................................................................................................................................................	20	1	5.00	5	0	0	5	0	0	0	0	0	0	0
...................................................................................................................................................................................................CATAAAGCTAGACAACCATTGAAT........................................................................................................................................................................	24	1	5.00	5	0	0	4	0	1	0	0	0	0	0
.......................................................................................................................................................................................................AAGCTAGACAACCATTGAAGT.......................................................................................................................................................................	21	1	5.00	5	0	0	1	0	4	0	0	0	0	0

droPer2

ATG------GCCAACCAG-------------TGACGGAAGT-GACAAAAGTGA--------AAAAAGTGACAAAGTGTGTGT----------AC------ACTCCACGAGTTG-AT---------------ACCT---TA-TTG-TGGTTGCAATTAGTTTCTTTGGTCGTCCAGCCTTAGGTGATTTCTCTGATCATAAAGCTAGACAACCATTGAAGTTCGTTGTGGCATTTGCAGCACT-ACCTACCACAACCACACCCACACCAACACCAACACCC---------------------------A---TACCCACC-----------------------CT-CACA----TC------------------------CATCCCAG	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
....................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAA.........................................................................................................................................................................	22	1	705.00	705	10	71	549	1	52	22
....................................................................................................................................................................................................ATAAAGCTAGACAACCATTGA..........................................................................................................................................................................	21	1	489.00	489	4	52	363	0	63	7
................................................................................................................................................................TCTTTGGTCGTCCAGCCTTAG..............................................................................................................................................................................................................	21	1	181.00	181	177	0	4	0	0	0
....................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAG........................................................................................................................................................................	23	1	137.00	137	25	8	100	0	4	0
................................................................................................................................................................TCTTTGGTCGTCCAGCCTTAGG.............................................................................................................................................................................................................	22	1	107.00	107	97	3	7	0	0	0
....................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAA........................................................................................................................................................................	23	1	101.00	101	20	6	68	0	5	2
....................................................................................................................................................................................................ATAAAGCTAGACAACCATTG...........................................................................................................................................................................	20	1	68.00	68	3	4	59	0	2	0
.................................................................................................................................................................CTTTGGTCGTCCAGCCTTAGGTGA..........................................................................................................................................................................................................	24	1	55.00	55	2	0	53	0	0	0
....................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAC........................................................................................................................................................................	23	1	42.00	42	39	2	1	0	0	0
.................................................................................................................................................................CTTTGGTCGTCCAGCCTTAGG.............................................................................................................................................................................................................	21	1	31.00	31	29	0	2	0	0	0
.....................................................................................................................................................................................................TAAAGCTAGACAACCATTGAAG........................................................................................................................................................................	22	1	30.00	30	8	1	19	0	1	1
.................................................................................................................................................................CTTTGGTCGTCCAGCCTTAGGTG...........................................................................................................................................................................................................	23	1	24.00	24	17	1	6	0	0	0
.................................................................................................................................................................CTTTGGTCGTCCAGCCTTAGGT............................................................................................................................................................................................................	22	1	18.00	18	10	0	7	0	0	1
................................................................................................................................................................TCTTTGGTCGTCCAGCCTTAGGTG...........................................................................................................................................................................................................	24	1	16.00	16	9	0	7	0	0	0
.....................................................................................................................................................................................................TAAAGCTAGACAACCATTGAAGT.......................................................................................................................................................................	23	1	15.00	15	2	0	13	0	0	0
................................................................................................................................................................TCTTTGGTCGTCCAGCCTTAGGTGA..........................................................................................................................................................................................................	25	1	14.00	14	5	0	7	0	2	0
................................................................................................................................................................TCTTTGGTCGTCCAGCCTTA...............................................................................................................................................................................................................	20	1	11.00	11	10	0	1	0	0	0
.....................................................................................................................................................................................................TAAAGCTAGACAACCATTGAA.........................................................................................................................................................................	21	1	9.00	9	0	3	4	0	0	2
................................................................................................................................................................TCTTTGGTCGTCCAGCCT.................................................................................................................................................................................................................	18	1	8.00	8	8	0	0	0	0	0
....................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAGT.......................................................................................................................................................................	24	1	8.00	8	2	0	6	0	0	0
...............................................................................................................................................................TTCTTTGGTCGTCCAGCCTTAG..............................................................................................................................................................................................................	22	1	8.00	8	8	0	0	0	0	0
.................................................................................................................................................................CTTTGGTCGTCCAGCCTTAG..............................................................................................................................................................................................................	20	1	5.00	5	3	0	2	0	0	0
.....................................................................................................................................................................................................TAAAGCTAGACAACCATTGAAC........................................................................................................................................................................	22	1	5.00	5	4	0	1	0	0	0
................................................................................................................................................................TCTTTGGTCGTCCAGCCTTAGGT............................................................................................................................................................................................................	23	1	5.00	5	4	0	1	0	0	0
.........................................................................................................................................................................................TTTCTCTGATCATAAAGCTAGACAACC...............................................................................................................................................................................	27	1	4.00	4	4	0	0	0	0	0
.....................................................................................................................................................................................................TAAAGCTAGACAACCATTGAAA........................................................................................................................................................................	22	1	4.00	4	0	0	3	0	1	0
....................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAT........................................................................................................................................................................	23	1	4.00	4	1	0	2	0	1	0
................................................................................................................................................................TCTTTGGTCGTCCAGCCTTAGGG............................................................................................................................................................................................................	23	1	3.00	3	3	0	0	0	0	0
....................................................................................................................................................................................................ATAAAGCTAGACAACCATTGT..........................................................................................................................................................................	21	1	3.00	3	0	0	2	0	1	0
.....................................................................................................................................................................................................TAAAGCTAGACAACCATTGA..........................................................................................................................................................................	20	1	3.00	3	0	2	1	0	0	0
.................................................................................................................................................................CTTTGGTCGTCCAGCCTTA...............................................................................................................................................................................................................	19	1	3.00	3	3	0	0	0	0	0
...............................................................................................................................................................TTCTTTGGTCGTCCAGCCT.................................................................................................................................................................................................................	19	1	2.00	2	2	0	0	0	0	0
....................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAAA.......................................................................................................................................................................	24	1	2.00	2	2	0	0	0	0	0
..................................................................................................................................................................TTTGGTCGTCCAGCCTTAGGTGA..........................................................................................................................................................................................................	23	1	2.00	2	0	0	2	0	0	0
....................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAC.........................................................................................................................................................................	22	1	2.00	2	0	0	1	0	0	1
................................................................................................................................................................TCTTTGGTCGTCCAGCCTT................................................................................................................................................................................................................	19	1	2.00	2	2	0	0	0	0	0
..................................................................................................................................................................TTTGGTCGTCCAGCCTTAGGTG...........................................................................................................................................................................................................	22	1	2.00	2	2	0	0	0	0	0
.................................................................................................................................................................CTTTGGTCGTCCAGCCTTAGGG............................................................................................................................................................................................................	22	1	1.00	1	1	0	0	0	0	0
..................................................................................................................................................................TTTGGTCGTCCAGCCTTAGGTGAT.........................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0	0	0
...................................................................................................................................................................................................CATAAAGCTAGACAACCATTGAT.........................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0	0
...............................................................................................................................................................TTCTTTGGTCGTCCAGCCTTA...............................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
...................................................................................................................................................................................................CATAAAGCTAGACAACCATTGA..........................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0
.................................................................................................................................................................CTTTGGTCGTCCAGCCTT................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0
................................................................................................................................................................TCTTTGGTCGTCCAGCCC.................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0
.............................................................................................................................................TTG-TGGTTGCAATTAGTTT..................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0	0
.....................................................................................................................................................................................................TAAAGCTAGACAACCATTGAAGA.......................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0
......................................................................................................................................................................GTCGTCCAGCCTTAGGTGA..........................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0	0
....................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAG.........................................................................................................................................................................	22	1	1.00	1	0	0	0	0	1	0
....................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAT.........................................................................................................................................................................	22	1	1.00	1	0	0	0	0	1	0
...................................................................................................................................................................................................CATAAAGCTAGACAACCATTGAA.........................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0	0
................................................................................................................................................................TCTTTGGTCGTCCAGCCTTAGGA............................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0
....................................................................................................................................................................................................ATAAAGCTAGACAACCATTGC..........................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0
...................................................................................................................................................................................................CATAAAGCTAGACAACCATTG...........................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0
.....................................................................................................................................................................................................TAAAGCTAGACAACCATTGAAT........................................................................................................................................................................	22	1	1.00	1	0	0	0	0	1	0
.........................................................................................................................................................................................................GCTAGACAACCATTGAAG........................................................................................................................................................................	18	1	1.00	1	0	0	1	0	0	0
...................................................................................................................................................................................................CATAAAGCTAGACAACCATTGAC.........................................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0
................................................................................................................................................................TCTTTGGTCGTCCAGCCTTAGGTGAG.........................................................................................................................................................................................................	26	1	1.00	1	0	0	1	0	0	0
....................................................................................................................................................................................................ATAAAGCTAGACAACCATTGG..........................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0

droAna3

AAG------CTAA---AGTGACTTGGAAATGTAA----AGT-----------------------------------T--T--CA-------A----------------------ATAATATA------------CCAATA-TAA-AGGTTGCAATTAGTTTCTTTGGTCGTCCAGCCTTAGGTGACTTCTCTGATCATAAAGCTAGACAACCATTGAAGTTCGTTGTGGCAATTGCGGCGCTTATTA-A-----------------------------------------------------------CAAGAA--TTTCA--AATGTGAC--T-ATTC-----GAA--AA--AAAATG------TAAA------------------	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
....................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAA.........................................................................................................................................................................	22	1	2705.00	2705	120	2271	291	11	5	7
....................................................................................................................................................................................................ATAAAGCTAGACAACCATTGA..........................................................................................................................................................................	21	1	2622.00	2622	79	2080	439	10	4	10
....................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAG........................................................................................................................................................................	23	1	1441.00	1441	19	1214	198	3	2	5
....................................................................................................................................................................................................ATAAAGCTAGACAACCATTG...........................................................................................................................................................................	20	1	739.00	739	27	567	137	1	1	6
....................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAA........................................................................................................................................................................	23	1	313.00	313	13	265	34	1	0	0
.....................................................................................................................................................................................................TAAAGCTAGACAACCATTGAAG........................................................................................................................................................................	22	1	128.00	128	6	97	22	0	1	2
....................................................................................................................................................................................................ATAAAGCTAGACAACCAT.............................................................................................................................................................................	18	1	125.00	125	0	125	0	0	0	0
....................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAGT.......................................................................................................................................................................	24	1	81.00	81	1	72	7	0	0	1
....................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAC........................................................................................................................................................................	23	1	63.00	63	0	63	0	0	0	0
....................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAT........................................................................................................................................................................	23	1	53.00	53	2	41	10	0	0	0
....................................................................................................................................................................................................ATAAAGCTAGACAACCATT............................................................................................................................................................................	19	1	42.00	42	2	31	9	0	0	0
.....................................................................................................................................................................................................TAAAGCTAGACAACCATTGAA.........................................................................................................................................................................	21	1	41.00	41	12	22	7	0	0	0
...................................................................................................................................................................................................CATAAAGCTAGACAACCATTGAA.........................................................................................................................................................................	23	1	32.00	32	1	31	0	0	0	0
....................................................................................................................................................................................................ATAAAGCTAGACAACCATTGT..........................................................................................................................................................................	21	1	31.00	31	0	25	6	0	0	0
.....................................................................................................................................................................................................TAAAGCTAGACAACCATTGAAGT.......................................................................................................................................................................	23	1	29.00	29	0	24	4	0	1	0
................................................................................................................................................................TCTTTGGTCGTCCAGCCTTAGGTG...........................................................................................................................................................................................................	24	1	25.00	25	4	18	3	0	0	0
....................................................................................................................................................................................................ATAAAGCTAGACAACCAC.............................................................................................................................................................................	18	1	25.00	25	0	25	0	0	0	0
................................................................................................................................................................TCTTTGGTCGTCCAGCCTTAGGTGA..........................................................................................................................................................................................................	25	1	23.00	23	4	7	10	2	0	0
.................................................................................................................................................................CTTTGGTCGTCCAGCCTTAGGTGA..........................................................................................................................................................................................................	24	1	22.00	22	1	7	13	1	0	0
....................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAC.........................................................................................................................................................................	22	1	21.00	21	0	21	0	0	0	0
...................................................................................................................................................................................................CATAAAGCTAGACAACCATTGA..........................................................................................................................................................................	22	1	21.00	21	0	20	1	0	0	0
.....................................................................................................................................................................................................TAAAGCTAGACAACCATTGA..........................................................................................................................................................................	20	1	18.00	18	9	8	0	0	0	1
....................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAAA.......................................................................................................................................................................	24	1	15.00	15	3	12	0	0	0	0
.................................................................................................................................................................CTTTGGTCGTCCAGCCTTAGGTG...........................................................................................................................................................................................................	23	1	14.00	14	7	7	0	0	0	0
................................................................................................................................................................TCTTTGGTCGTCCAGCCTTAGG.............................................................................................................................................................................................................	22	1	13.00	13	7	5	1	0	0	0
....................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAT.........................................................................................................................................................................	22	1	12.00	12	0	11	1	0	0	0
....................................................................................................................................................................................................ATAAAGCTAGACAACCATTGC..........................................................................................................................................................................	21	1	11.00	11	0	6	5	0	0	0
.....................................................................................................................................................................................................TAAAGCTAGACAACCATTGAAA........................................................................................................................................................................	22	1	11.00	11	1	9	1	0	0	0
...................................................................................................................................................................................................CATAAAGCTAGACAACCATTGAAG........................................................................................................................................................................	24	1	9.00	9	0	8	1	0	0	0
....................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAGA.......................................................................................................................................................................	24	1	8.00	8	0	7	1	0	0	0
....................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAGC.......................................................................................................................................................................	24	1	8.00	8	0	7	1	0	0	0
......................................................................................................................................................................................................AAAGCTAGACAACCATTGAA.........................................................................................................................................................................	20	1	7.00	7	0	7	0	0	0	0
.................................................................................................................................................................CTTTGGTCGTCCAGCCTTAGGT............................................................................................................................................................................................................	22	1	7.00	7	1	3	3	0	0	0
................................................................................................................................................................TCTTTGGTCGTCCAGCCTTAGGT............................................................................................................................................................................................................	23	1	7.00	7	1	3	2	1	0	0
................................................................................................................................................................TCTTTGGTCGTCCAGCCTTAG..............................................................................................................................................................................................................	21	1	7.00	7	4	0	3	0	0	0
....................................................................................................................................................................................................ATAAAGCTAGACAACCATTT...........................................................................................................................................................................	20	1	6.00	6	0	4	2	0	0	0
.......................................................................................................................................................................................................AAGCTAGACAACCATTGAAGTT......................................................................................................................................................................	22	1	5.00	5	0	4	1	0	0	0
......................................................................................................................................................................................................AAAGCTAGACAACCATTGAAG........................................................................................................................................................................	21	1	5.00	5	0	5	0	0	0	0
......................................................................................................................................................................................................AAAGCTAGACAACCATTGA..........................................................................................................................................................................	19	1	5.00	5	0	5	0	0	0	0
.......................................................................................................................................................................................................AAGCTAGACAACCATTGAAGT.......................................................................................................................................................................	21	1	5.00	5	0	2	3	0	0	0
.....................................................................................................................................................................................................TAAAGCTAGACAACCATTGAAGA.......................................................................................................................................................................	23	1	4.00	4	0	4	0	0	0	0
.........................................................................................................................................................................................................GCTAGACAACCATTGAAG........................................................................................................................................................................	18	1	4.00	4	0	4	0	0	0	0
...................................................................................................................................................................................................CATAAAGCTAGACAACCATTG...........................................................................................................................................................................	21	1	4.00	4	0	4	0	0	0	0
....................................................................................................................................................................................................ATAAAGCTAGACAACCATTGACA........................................................................................................................................................................	23	1	3.00	3	0	3	0	0	0	0
....................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAG.........................................................................................................................................................................	22	1	3.00	3	0	2	1	0	0	0
..................................................................................................................................................................................................TCATAAAGCTAGACAACCATTGA..........................................................................................................................................................................	23	1	3.00	3	0	3	0	0	0	0
................................................................................................................................................................................................GATCATAAAGCTAGACAACCATTGAA.........................................................................................................................................................................	26	1	3.00	3	0	3	0	0	0	0
....................................................................................................................................................................................................ATAAAGCTAGACAACCATTGACT........................................................................................................................................................................	23	1	3.00	3	0	1	2	0	0	0
.................................................................................................................................................................................................ATCATAAAGCTAGACAACCATTGAA.........................................................................................................................................................................	25	1	3.00	3	0	3	0	0	0	0
...................................................................................................................................................................................................CATAAAGCTAGACAACCATTGAT.........................................................................................................................................................................	23	1	3.00	3	0	2	1	0	0	0
....................................................................................................................................................................................................ATAAAGCTAGACAACCATTGG..........................................................................................................................................................................	21	1	3.00	3	0	3	0	0	0	0
.................................................................................................................................................................CTTTGGTCGTCCAGCCTTAGG.............................................................................................................................................................................................................	21	1	3.00	3	3	0	0	0	0	0
.......................................................................................................................................................................................................AAGCTAGACAACCATTGA..........................................................................................................................................................................	18	1	2.00	2	0	2	0	0	0	0
.....................................................................................................................................................................................................TAAAGCTAGACAACCATTG...........................................................................................................................................................................	19	1	2.00	2	2	0	0	0	0	0
...................................................................................................................................................................................................CATAAAGCTAGACAACCATTGAAA........................................................................................................................................................................	24	1	2.00	2	0	2	0	0	0	0
....................................................................................................................................................................................................ATAAAGCTAGACAACCATTC...........................................................................................................................................................................	20	1	2.00	2	0	2	0	0	0	0
.....................................................................................................................................................................................................TAAAGCTAGACAACCATTGAAAA.......................................................................................................................................................................	23	1	2.00	2	0	2	0	0	0	0
................................................................................................................................................................TCTTTGGTCGTCCAGCCTTA...............................................................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
....................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAACC.......................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0
..........................................................................................................................................................................................................................GTTCGTTGTGGCAATTGCGGC....................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0
....................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAGTG......................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0
.............................................................................................................................................TAA-AGGTTGCAATTAGTTT..................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0
................................................................................................................................................................................................GATCATAAAGCTAGACAACCATTGA..........................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0
..................................................................................................................................................................................................TCATAAAGCTAGACAACCATTGAA.........................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0
......................................................................................................................................................................................................AAAGCTAGACAACCATTG...........................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0
....................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAAC.......................................................................................................................................................................	24	1	1.00	1	0	0	1	0	0	0
.................................................................................................................................................................................................ATCATAAAGCTAGACAACCATTGAG.........................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0
...................................................................................................................................................................................................CATAAAGCTAGACAACCATTGAC.........................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0
..................................................................................................................................................................................................TCATAAAGCTAGACAACCATTGAAG........................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0

droBip1

AAG------CTAA---AG-------------TG-------T-----------------------------------T--T--CA-------A----------------------ATAGT------------GTTT---CT-TAA-AGGTTGCAATTAGTTTCTTTGGTCGTCCAGCCTTAGGTGACTTCACTGATCATAAAGCTAGACAACCATTGAAGTTCGTTGTGGCAATTGCAGCGTTTATTT-A-----------------------------------------------------------TGAAAA--TTTAA------------AAAATT-----AAA--TA--AAAAAG------TGAA------------------	Size	Hit Count	Total Norm	Total
No Reads

droKik1

AAGTTAGGGGATAA--AG-------------TGC----AGT-TGT--A---------------------------------------------------------ACAAGTTA-AT---ATAT-----------CCAAACAAGG-CGGTTGCAATTAGTTTCTTTGGTCGTCCAGCCTTAGGTGATTTTTCTGATCATAAAGCTAGACAACCATTGAAGTTCGTTGTGGCATTTGCAGCCTT--------------------------------------------------------------------ATGATATTCAGGATATGTC-C--TAAACC------------AA-----G------TGATATCTCA------------	Size	Hit Count	Total Norm	Total
No Reads

droFic1

AGA------CAAG----G-------------TGA----AGT-TAC--CAGTGA--------AA-------------------------------------------------------------------------------AA-CGGTTGCAATTAGTTTCTTTGGTCGTCCAGCCTTAGGTGACTTCTCTGATCATAAAGCTAGACAACCATTGAAGTTCGTTGTGGCATTCGCAGCACT--------------------------------------------------------------------ACA-----------------------ATA-----AAG--TTTA-----G------TGATTCCTAAAGTA--------	Size	Hit Count	Total Norm	Total
No Reads

droEle1

AAG------CCAA----G-------------TGA----TGTTTTT--TAGTGA--------AA--------------------------------------G---------AGG-----CAAT-----------C---CC-CAA-CGGTTGCAATTAGTTTCTTTGGTCGTCCAGCCTTAGGTGATTTCTCTGATCATAAAGCTAGACAACCATTGAAGTTCGTTGTGGCATTTGCAGCATTT-------------------------------------------------------------------ACAA--GCCAA------------TACAAA-----AAG--TTGA-----G------TGAA------------------	Size	Hit Count	Total Norm	Total
No Reads

droRho1

TTG------CCTA----G-------------TGA----AAT-TAT--TAGTGA--------AA------------A-------------------------G---------AAG-----ACAT-----------C---CA-AGA-CAGTTGCAATTAGTTTCTTTGGTCGTCCAGCCTTAGGTGATTTCTCTGATCATAAAGCTAGACAACCATTGAAGTTCGTTGTGGCATTTGCAACATT--------------------------------------------------------------------ACAA--TTCAA------------TAAAAC-----AAG--TTGA-----G------TGATCCCTAC-ATT--------	Size	Hit Count	Total Norm	Total
No Reads

droBia1

AAG------CGAA----G-------------TGA----AGT-TAA--AGGTGC--------AA--------------------------------------G--------TGGG-----CCAT-----------C---AA-ACT-CGGTTGCAATTAGTTTCTTTGGTCGTCCAGCCTTAGGTGACTCTTCCGATCATAAAGCTAGACAACCATTGAAGTTCGTTGTGGCATTTGCAGCACT--------------------------------------------------------------------ACAA--GCCA-------------TAAATC-----AAT--TTGA-----G------TGATCCCCAC-GTATCT-----	Size	Hit Count	Total Norm	Total
No Reads

droTak1

ATG------CTTA----G-------------TGA----AGT-TAA---AGTTA--------AA-----------GTTAATGT-G-------AAT-------G--------TAGG-----CAAT-----------C---TA-ACT-GGGTTGCAATTAGTTTCTTTGGTCGTCCAGCCTTAGGTGACTCTTCTGATCATAAAGCTAGACAACCATTGAAGTTCGTTGTGGCATTTGCAGCACT--------------------------------------------------------------------ACAA--GCCAG------------TGAATT-----AAG--TTGA-----G------TGATCCCAGC-ATA--------	Size	Hit Count	Total Norm	Total
No Reads

droEug1

AAG------CTAA----G-------------TGA----A---------AGTTA--------AA------------------------------AAGCAAAAAT---------AA-----AGAT-----------C---TA-AAA-CGGTCGCAATTAGTTTCTTTGGTCGTCCAGCCTTAGGTGACTTTTCTGATCATAAAGCTAGACAACCATTGAAGTTCGTTGTGGCATTTGCAGCACT--------------------------------------------------------------------TCAA--GCC-------------------------AAG--TTAA-----G------TGTTACCA--------------	Size	Hit Count	Total Norm	Total
No Reads

dm3

ATG------CTCA----G-------------TAA----AGT-TGC--GAGTGA--------AA------------AT--T--AA-------A----------------------ATA---------------TTA---TG-GAG-CGGTTGCAATTAGTTTCTTTGGTCGTCCAGCCTTAGGTGATTTTTCCGGTCATAAAGCTAGACAACCATTGAAGTTCGTTGTGGCATTAGCAGCACC--------------------------------------------------------------------ACGA--GTCAA------------GAAATT-----ATG--TTAA-----G------TGATCCCCAA------------	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
....................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAA.........................................................................................................................................................................	22	1	305216.00	305216	0	0	0	0	4	1	181	864	307	92	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	508	0	2	0	0	0	0	1	0	1	9	3	3	0	0	3	8	0	2	0	0	0	27	3	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	1	1	4	0	20101	3655	6921	7840	2681	2	2	3	6	2	27	2	0	11	2	1	33	7	7	14	168	0	11	3	8	561	725	16	0	0	2600	129	9	2710	0	0	8	0	0	0	2	2	12	0	1	0	1	1	0	0	0	0	0	0	1	2	0	0	929	4668	10605	5458	503	4	3	1	0	8	6	7	0	9	4	0	0	0	0	0	0	0	0	1	0	0	45	71	0	24	0	0	8	7	2	7	0	1	0	5	0	5	0	5	0	0	20	0	0	1	23	0	0	0	0	1	4	0	0	0	0	0	0	18	6	0	0	0	0	0	0	3	6	0	10	7	0	3	13	23	12	85	7	257	3	217	71	0	0	305	0	0	0	0	1389	2426	2	0	1	0	1	4	2	0	2	2	24	0	1	1	1	13	84	2	0	2	4	1	3	4	0	2	3	0	35	6	1	0	7	61	8	24	1	67	11	52	4	4	10	15	5	10	13	10	15	218655	7501	10	16	23	0	2	23	2	8	2	1	0	2	1	14	3	11	6	22	2	23	3	6	2	0	28	6	5	3	2	16	3	34	64	525	2	7	6	12	21	12	0
....................................................................................................................................................................................................ATAAAGCTAGACAACCATTGA..........................................................................................................................................................................	21	1	52770.00	52770	0	0	0	0	1	1	5	43	71	46	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	3	0	0	0	0	0	0	0	0	198	0	0	0	0	0	1	0	5	0	13	2	0	0	0	0	2	1	0	0	0	0	11	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	1	0	2	2	834	294	1177	2132	82	0	0	0	3	1	7	0	2	14	0	2	18	13	10	11	11	0	3	2	5	26	19	0	1	0	414	98	1	275	0	1	0	0	0	0	0	1	3	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	532	1248	3704	1213	88	11	1	0	0	3	2	1	1	4	3	0	0	0	0	0	0	0	0	1	0	0	8	20	0	1	0	0	8	7	0	3	0	2	0	7	2	0	0	0	0	0	19	0	3	1	6	0	0	0	0	0	0	0	0	0	0	0	0	5	0	0	0	1	0	0	0	2	1	0	3	6	2	4	2	14	9	11	1	61	2	48	139	0	0	178	0	0	0	0	1834	1692	1	1	1	1	1	2	0	0	2	0	12	1	1	1	0	9	50	4	0	1	0	1	3	2	1	2	0	2	25	1	2	1	11	106	3	26	9	54	4	32	4	3	9	6	3	14	7	11	13	26519	8432	8	6	23	0	1	5	2	4	0	1	1	1	2	17	0	4	4	27	1	16	3	4	0	1	27	1	2	0	6	4	3	39	93	221	1	8	7	20	13	11	0
....................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAA........................................................................................................................................................................	23	1	19460.00	19460	0	0	0	0	0	0	5	24	16	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	43	0	1	0	0	0	0	0	3	0	3	0	0	0	0	1	3	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	761	192	435	299	77	0	1	0	0	0	1	0	0	3	0	0	5	1	1	0	2	0	2	0	1	10	15	0	0	0	95	10	0	58	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	154	1331	3249	420	43	7	1	2	1	1	0	4	0	7	3	0	0	0	0	0	0	0	0	0	0	0	0	3	0	1	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	6	0	3	0	0	0	0	0	0	0	0	0	2	0	0	0	1	2	10	1	28	0	16	4	0	0	46	0	0	0	0	409	242	1	1	1	0	0	0	0	0	0	0	2	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	3	0	1	1	4	27	5	10	5	42	1	21	0	1	1	3	2	3	1	0	0	9867	1292	1	1	2	0	2	4	0	2	0	0	0	0	0	1	0	5	8	1	0	2	2	0	0	2	2	3	0	0	2	1	0	4	2	29	2	1	0	2	0	2	0
.................................................................................................................................................................CTTTGGTCGTCCAGCCTTAGGTGA..........................................................................................................................................................................................................	24	1	12143.00	12143	0	0	0	0	1	0	72	126	8	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	31	1	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2789	1484	198	164	1930	0	0	1	0	1	3	0	0	1	0	0	2	2	3	2	43	0	1	0	2	93	137	0	0	0	303	10	1	166	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	217	916	1173	423	138	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	1	0	0	0	0	1	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	2	0	4	0	4	0	0	0	0	0	0	0	0	129	82	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	1	0	0	0	1	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1438	5	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	1	0
....................................................................................................................................................................................................ATAAAGCTAGACAACCATTG...........................................................................................................................................................................	20	1	4710.00	4710	0	0	0	0	1	0	0	1	5	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2815	0	0	0	0	0	0	0	1	0	2	0	0	0	0	0	1	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	19	4	171	140	2	0	0	0	0	0	1	0	0	0	0	0	1	2	1	1	0	0	0	0	0	7	3	0	0	1	30	4	0	23	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	61	64	160	24	1	6	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	1	0	0	0	1	0	0	0	0	0	0	2	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	2	0	1	0	3	1	0	0	22	0	0	0	0	61	112	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	2	1	0	0	0	11	1	3	0	0	0	1	0	0	0	0	0	2	0	4	3	441	406	1	0	1	0	0	0	0	0	1	0	0	0	0	4	0	0	0	9	0	2	0	0	0	0	4	1	0	0	0	4	0	1	12	3	0	0	1	5	2	7	0
....................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAG........................................................................................................................................................................	23	1	4653.00	4653	0	0	0	0	0	0	5	13	11	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	7	0	0	0	0	0	0	0	1	0	2	1	0	0	0	0	2	0	1	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	315	76	196	149	57	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	3	0	2	0	0	3	10	0	0	0	49	3	0	34	0	0	0	0	0	0	0	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	60	243	506	184	6	0	0	0	1	1	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	1	2	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	10	0	20	0	41	0	22	1	0	0	7	0	0	0	0	86	48	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	5	0	0	0	0	1	0	0	0	0	0	0	1	0	0	1	1	0	0	0	0	1	0	1	0	0	0	1	1	0	1	0	0	2194	201	2	0	1	0	1	2	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	5	27	0	0	0	0	2	2	0
.................................................................................................................................................................CTTTGGTCGTCCAGCCTTAGGTG...........................................................................................................................................................................................................	23	1	4128.00	4128	0	0	0	0	0	0	27	52	6	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	36	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	715	233	93	46	467	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	17	21	2	0	0	71	3	0	37	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	187	811	582	390	44	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	2	0	0	0	6	0	9	0	0	1	0	0	0	0	0	23	17	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	218	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................CTTTGGTCGTCCAGCCTTAGGT............................................................................................................................................................................................................	22	1	3620.00	3620	0	0	0	0	1	0	4	16	4	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	312	112	91	64	176	1	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	1	15	27	3	0	0	48	1	0	20	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	294	699	945	183	13	1	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	1	0	0	0	9	0	4	0	0	0	1	0	0	0	0	68	79	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	2	0	0	0	0	0	0	0	0	0	0	0	379	26	0	0	2	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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......................................................................................................................................A---TG-GAG-CGGTTGCAATTAGTTT..................................................................................................................................................................................................................................	22	1	31.00	31	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	20	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................CTTTGGTCGTCCAGCCTTAGGTT...........................................................................................................................................................................................................	23	1	30.00	30	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6	15	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................ATAAAGCTAGACAACCAT.............................................................................................................................................................................	18	1	28.00	28	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	14	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................CTTTGGTCGTCCAGCCTTAGGTA...........................................................................................................................................................................................................	23	1	27.00	27	0	0	0	0	0	0	2	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	12	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................TCTTTGGTCGTCCAGCCTTAGT.............................................................................................................................................................................................................	22	1	25.00	25	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	8	13	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................CTTTGGTCGTCCAGCCTTAGGC............................................................................................................................................................................................................	22	1	24.00	24	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	7	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

ATG------CTCA----G-------------TGA----AGT-TGC--AAGTGA--------AA------------CT--T--CA-------A----------------------ATA---------------TTC---TG-TGG-CGGTTGCAATTAGTTTCTTTGGTCGTCCAGCCTTAGGTGACTTTTCCGATCATAAAGCTAGACAACCATTGAAGTTCGTTGTGGCATTAGCAGCACC--------------------------------------------------------------------ACAA--GTCAA------------GAAATC-----AAG--TTAA-----G------TTATCACCAA------------	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
....................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAA.........................................................................................................................................................................	22	1	67041.00	67041	0	0	199	118	4	28	191	112	32322	30313	7	3737	1	9	0	0	0
....................................................................................................................................................................................................ATAAAGCTAGACAACCATTGA..........................................................................................................................................................................	21	1	25945.00	25945	0	0	81	44	4	37	89	55	13597	8789	3	3243	0	3	0	0	0
....................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAA........................................................................................................................................................................	23	1	2764.00	2764	0	0	81	14	0	0	13	2	1500	895	0	255	0	4	0	0	0
....................................................................................................................................................................................................ATAAAGCTAGACAACCATTG...........................................................................................................................................................................	20	1	1723.00	1723	0	1	38	5	0	4	1	1	772	602	0	297	0	2	0	0	0
................................................................................................................................................................TCTTTGGTCGTCCAGCCTTAGGTGA..........................................................................................................................................................................................................	25	1	1292.00	1292	0	0	20	0	0	1	17	4	632	603	0	15	0	0	0	0	0
................................................................................................................................................................TCTTTGGTCGTCCAGCCTTAG..............................................................................................................................................................................................................	21	1	1188.00	1188	4	0	1108	1	0	0	0	0	27	32	1	15	0	0	0	0	0
.................................................................................................................................................................CTTTGGTCGTCCAGCCTTAGGTGA..........................................................................................................................................................................................................	24	1	1139.00	1139	0	0	7	0	0	0	15	3	543	506	1	64	0	0	0	0	0
....................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAG........................................................................................................................................................................	23	1	1061.00	1061	0	0	200	8	0	3	4	1	210	146	0	489	0	0	0	0	0
................................................................................................................................................................TCTTTGGTCGTCCAGCCTTAGG.............................................................................................................................................................................................................	22	1	759.00	759	1	0	715	0	0	0	0	0	10	19	0	14	0	0	0	0	0
....................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAC........................................................................................................................................................................	23	1	524.00	524	0	0	349	0	0	0	1	0	78	87	0	9	0	0	0	0	0
.................................................................................................................................................................CTTTGGTCGTCCAGCCTTAGGTG...........................................................................................................................................................................................................	23	1	389.00	389	3	1	346	0	0	0	3	0	9	14	0	11	1	1	0	0	0
................................................................................................................................................................TCTTTGGTCGTCCAGCCTTAGGTG...........................................................................................................................................................................................................	24	1	347.00	347	1	0	285	1	0	0	0	1	29	20	0	10	0	0	0	0	0
.................................................................................................................................................................CTTTGGTCGTCCAGCCTTAGG.............................................................................................................................................................................................................	21	1	243.00	243	0	0	236	0	0	0	1	0	2	1	0	3	0	0	0	0	0
.................................................................................................................................................................CTTTGGTCGTCCAGCCTTAGGT............................................................................................................................................................................................................	22	1	225.00	225	3	0	105	0	0	0	3	0	47	50	0	17	0	0	0	0	0
.....................................................................................................................................................................................................TAAAGCTAGACAACCATTGAAG........................................................................................................................................................................	22	1	207.00	207	0	0	38	0	0	0	2	0	44	31	0	92	0	0	0	0	0
....................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAT........................................................................................................................................................................	23	1	172.00	172	0	0	7	0	0	0	1	1	82	50	0	30	0	1	0	0	0
................................................................................................................................................................TCTTTGGTCGTCCAGCCTTAGGT............................................................................................................................................................................................................	23	1	139.00	139	0	0	47	0	0	0	0	0	41	44	0	7	0	0	0	0	0
.....................................................................................................................................................................................................TAAAGCTAGACAACCATTGAA.........................................................................................................................................................................	21	1	94.00	94	0	0	0	7	0	0	0	0	36	37	0	14	0	0	0	0	0
.....................................................................................................................................................................................................TAAAGCTAGACAACCATTGAAA........................................................................................................................................................................	22	1	72.00	72	0	0	0	1	0	0	0	1	39	26	0	5	0	0	0	0	0
.................................................................................................................................................................CTTTGGTCGTCCAGCCTTAG..............................................................................................................................................................................................................	20	1	57.00	57	0	0	54	0	0	0	0	0	1	1	0	1	0	0	0	0	0
....................................................................................................................................................................................................ATAAAGCTAGACAACCATT............................................................................................................................................................................	19	1	48.00	48	0	0	0	0	0	2	0	0	25	17	0	4	0	0	0	0	0
....................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAC.........................................................................................................................................................................	22	1	40.00	40	0	0	2	0	0	0	0	0	14	17	0	7	0	0	0	0	0
....................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAAA.......................................................................................................................................................................	24	1	37.00	37	0	0	5	0	0	0	0	0	19	8	0	3	0	2	0	0	0
....................................................................................................................................................................................................ATAAAGCTAGACAACCAT.............................................................................................................................................................................	18	1	35.00	35	0	0	2	0	3	30	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................TCTTTGGTCGTCCAGCCT.................................................................................................................................................................................................................	18	1	29.00	29	0	0	29	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................ATAAAGCTAGACAACCATTGG..........................................................................................................................................................................	21	1	28.00	28	0	0	16	0	0	0	0	0	2	4	0	6	0	0	0	0	0
.....................................................................................................................................................................................................TAAAGCTAGACAACCATTGA..........................................................................................................................................................................	20	1	27.00	27	0	0	0	2	0	0	0	0	13	7	0	5	0	0	0	0	0
................................................................................................................................................................TCTTTGGTCGTCCAGCCTTA...............................................................................................................................................................................................................	20	1	26.00	26	1	0	23	0	0	0	0	0	0	1	0	1	0	0	0	0	0
.....................................................................................................................................................................................................TAAAGCTAGACAACCATTGAAC........................................................................................................................................................................	22	1	25.00	25	0	0	21	0	0	0	0	0	2	2	0	0	0	0	0	0	0
......................................................................................................................................................................................................AAAGCTAGACAACCATTGAA.........................................................................................................................................................................	20	1	22.00	22	0	0	0	0	0	0	0	0	12	10	0	0	0	0	0	0	0
................................................................................................................................................................TCTTTGGTCGTCCAGCCTTAGGA............................................................................................................................................................................................................	23	1	22.00	22	0	0	17	0	0	0	0	0	2	3	0	0	0	0	0	0	0
....................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAG.........................................................................................................................................................................	22	1	19.00	19	0	0	1	0	0	0	0	1	4	8	0	5	0	0	0	0	0
....................................................................................................................................................................................................ATAAAGCTAGACAACCATTGT..........................................................................................................................................................................	21	1	18.00	18	0	0	0	0	0	0	0	0	1	0	0	17	0	0	0	0	0
.................................................................................................................................................................CTTTGGTCGTCCAGCCTTAGGC............................................................................................................................................................................................................	22	1	17.00	17	0	0	17	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAGA.......................................................................................................................................................................	24	1	15.00	15	0	0	0	0	0	0	0	0	7	8	0	0	0	0	0	0	0
....................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAT.........................................................................................................................................................................	22	1	14.00	14	0	0	1	0	0	0	0	0	2	1	0	10	0	0	0	0	0
.................................................................................................................................................................CTTTGGTCGTCCAGCCTTAGGG............................................................................................................................................................................................................	22	1	13.00	13	0	0	13	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................CATAAAGCTAGACAACCATTGAA.........................................................................................................................................................................	23	1	13.00	13	0	0	0	0	0	0	0	0	4	3	0	6	0	0	0	0	0
...................................................................................................................................................................................................CATAAAGCTAGACAACCATTGA..........................................................................................................................................................................	22	1	12.00	12	0	0	0	1	0	1	0	0	2	3	0	5	0	0	0	0	0
.....................................................................................................................................................................................................TAAAGCTAGACAACCATTGAAGT.......................................................................................................................................................................	23	1	9.00	9	0	0	0	0	0	0	0	0	1	3	0	5	0	0	0	0	0
...........................................................................................................................................................................................................TAGACAACCATTGAA.........................................................................................................................................................................	15	1	9.00	9	0	0	0	0	0	0	0	0	0	9	0	0	0	0	0	0	0
....................................................................................................................................................................................................ATAAAGCTAGACAACCATTGC..........................................................................................................................................................................	21	1	8.00	8	0	0	0	0	0	0	0	0	2	1	0	5	0	0	0	0	0
.......................................................................................................................................................................................................AAGCTAGACAACCATTGAA.........................................................................................................................................................................	19	1	8.00	8	0	0	0	0	0	0	0	1	2	4	0	1	0	0	0	0	0
....................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAGT.......................................................................................................................................................................	24	1	8.00	8	0	0	1	1	0	0	0	0	1	0	0	5	0	0	0	0	0
................................................................................................................................................................TCTTTGGTCGTCCAGCCTTAGGG............................................................................................................................................................................................................	23	1	7.00	7	0	0	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................GCTAGACAACCATTGAA.........................................................................................................................................................................	17	1	7.00	7	0	0	0	0	0	0	0	0	2	5	0	0	0	0	0	0	0
.....................................................................................................................................................................................................TAAAGCTAGACAACCATTGAAT........................................................................................................................................................................	22	1	6.00	6	0	0	0	0	0	0	0	0	2	3	0	1	0	0	0	0	0
.................................................................................................................................................................CTTTGGTCGTCCAGCCTTAGGA............................................................................................................................................................................................................	22	1	6.00	6	0	0	5	0	0	0	0	0	0	0	0	1	0	0	0	0	0
.....................................................................................................................................................................................................TAAAGCTAGACAACCATTG...........................................................................................................................................................................	19	1	6.00	6	0	0	0	1	0	0	0	0	2	2	0	1	0	0	0	0	0
..................................................................................................................................................................TTTGGTCGTCCAGCCTTAGGTGA..........................................................................................................................................................................................................	23	1	6.00	6	0	0	1	0	0	0	0	0	1	2	0	2	0	0	0	0	0
................................................................................................................................................................TCTTTGGTCGTCCAGCCTTAGGTGG..........................................................................................................................................................................................................	25	1	5.00	5	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................AAAGCTAGACAACCATTGA..........................................................................................................................................................................	19	1	5.00	5	0	0	0	0	0	0	0	0	2	2	0	1	0	0	0	0	0
................................................................................................................................................................TCTTTGGTCGTCCAGCCTT................................................................................................................................................................................................................	19	1	5.00	5	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................TCTTTGGTCGTCCAGCCTTAGGC............................................................................................................................................................................................................	23	1	5.00	5	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................CTTTGGTCGTCCAGCCTTAGGTGT..........................................................................................................................................................................................................	24	1	5.00	5	0	0	1	0	0	0	0	0	0	0	0	4	0	0	0	0	0
........................................................................................................................................................................................................AGCTAGACAACCATTGAA.........................................................................................................................................................................	18	1	5.00	5	0	0	0	0	0	0	0	0	3	2	0	0	0	0	0	0	0
..........................................................................................................................................................................................................CTAGACAACCATTGAA.........................................................................................................................................................................	16	1	4.00	4	0	0	0	0	0	0	0	0	3	1	0	0	0	0	0	0	0
.................................................................................................................................................................CTTTGGTCGTCCAGCCTTA...............................................................................................................................................................................................................	19	1	4.00	4	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAAAA......................................................................................................................................................................	25	1	4.00	4	0	0	1	0	0	0	0	0	0	2	0	0	0	1	0	0	0
.................................................................................................................................................................CTTTGGTCGTCCAGCCTTAGGTT...........................................................................................................................................................................................................	23	1	4.00	4	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................TCTTTGGTCGTCCAGCCTTAC..............................................................................................................................................................................................................	21	1	4.00	4	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAACA.......................................................................................................................................................................	24	1	4.00	4	0	0	3	0	0	0	0	0	0	1	0	0	0	0	0	0	0
..................................................................................................................................................................TTTGGTCGTCCAGCCTTAGGTG...........................................................................................................................................................................................................	22	1	4.00	4	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................TAGTTTCTTTGGTCGTCCAGC...................................................................................................................................................................................................................	21	1	4.00	4	0	0	3	0	0	0	0	0	0	1	0	0	0	0	0	0	0
.................................................................................................................................................................CTTTGGTCGTCCAGCCTT................................................................................................................................................................................................................	18	1	3.00	3	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................CTTTGGTCGTCCAGCCTTAGGTGG..........................................................................................................................................................................................................	24	1	3.00	3	0	0	2	0	0	0	0	0	0	0	0	1	0	0	0	0	0
.......................................................................................................................................................................................................AAGCTAGACAACCATTGA..........................................................................................................................................................................	18	1	3.00	3	0	0	0	0	0	0	0	0	2	1	0	0	0	0	0	0	0
....................................................................................................................................................................................................ATAAAGCTAGACAACCA..............................................................................................................................................................................	17	1	3.00	3	0	0	0	0	0	0	0	0	2	1	0	0	0	0	0	0	0
.....................................................................................................................................................................................................TAAAGCTAGACAACCATTGAAGA.......................................................................................................................................................................	23	1	2.00	2	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0
.................................................................................................................................................................CTTTGGTCGTCCAGCCTTAGGTGACT........................................................................................................................................................................................................	26	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................AAAGCTAGACAACCATTGAAA........................................................................................................................................................................	21	1	2.00	2	0	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0
....................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAAC.......................................................................................................................................................................	24	1	2.00	2	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0
................................................................................................................................................................TCTTTGGTCGTCCAGCCTTAGGTGC..........................................................................................................................................................................................................	25	1	2.00	2	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0
................................................................................................................................................................TCTTTGGTCGTCCAGCCTC................................................................................................................................................................................................................	19	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................TCTTTGGTCGTCCAGCCTTAGGTGAC.........................................................................................................................................................................................................	26	1	2.00	2	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................TCTTTGGTCGTCCAGCCTTAGT.............................................................................................................................................................................................................	22	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSec2

ATG------CTCA----G-------------TGA----AGT-TGC--AAGTGA--------AA------------CT--T--CA-------A----------------------ATA---------------TTC---TG-TGG-CGGTTGCAATTAGTTTCTTTGGTCGTCCAGCCTTAGGTGACTTTTCCGATCATAAAGCTAGACAACCATTGAAGTTCGTTGTGGCATTAGCAGCACC--------------------------------------------------------------------ACAA--GTCAG------------GAAATC-----AAG--TTAA-----G------TGATCCCCAA------------	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
....................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAA.........................................................................................................................................................................	22	1	19825.00	19825	541	12	18407	865
....................................................................................................................................................................................................ATAAAGCTAGACAACCATTGA..........................................................................................................................................................................	21	1	10325.00	10325	180	3	9901	241
....................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAA........................................................................................................................................................................	23	1	1484.00	1484	32	2	1412	38
....................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAG........................................................................................................................................................................	23	1	1312.00	1312	22	0	1251	39
....................................................................................................................................................................................................ATAAAGCTAGACAACCATTG...........................................................................................................................................................................	20	1	1212.00	1212	13	1	1183	15
.................................................................................................................................................................CTTTGGTCGTCCAGCCTTAGGTGA..........................................................................................................................................................................................................	24	1	431.00	431	2	0	425	4
.....................................................................................................................................................................................................TAAAGCTAGACAACCATTGAAG........................................................................................................................................................................	22	1	322.00	322	2	0	310	10
................................................................................................................................................................TCTTTGGTCGTCCAGCCTTAGGTGA..........................................................................................................................................................................................................	25	1	210.00	210	1	0	205	4
.................................................................................................................................................................CTTTGGTCGTCCAGCCTTAGGT............................................................................................................................................................................................................	22	1	129.00	129	1	0	126	2
.....................................................................................................................................................................................................TAAAGCTAGACAACCATTGAA.........................................................................................................................................................................	21	1	105.00	105	15	0	86	4
....................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAT........................................................................................................................................................................	23	1	103.00	103	2	0	97	4
................................................................................................................................................................TCTTTGGTCGTCCAGCCTTAG..............................................................................................................................................................................................................	21	1	91.00	91	1	0	90	0
....................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAC........................................................................................................................................................................	23	1	63.00	63	0	0	62	1
................................................................................................................................................................TCTTTGGTCGTCCAGCCTTAGG.............................................................................................................................................................................................................	22	1	57.00	57	5	0	52	0
................................................................................................................................................................TCTTTGGTCGTCCAGCCTTAGGT............................................................................................................................................................................................................	23	1	51.00	51	1	0	49	1
....................................................................................................................................................................................................ATAAAGCTAGACAACCATT............................................................................................................................................................................	19	1	49.00	49	5	0	43	1
....................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAT.........................................................................................................................................................................	22	1	34.00	34	1	0	30	3
.....................................................................................................................................................................................................TAAAGCTAGACAACCATTGAAA........................................................................................................................................................................	22	1	33.00	33	0	0	30	3
....................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAGT.......................................................................................................................................................................	24	1	31.00	31	1	0	30	0
.................................................................................................................................................................CTTTGGTCGTCCAGCCTTAGG.............................................................................................................................................................................................................	21	1	30.00	30	3	0	27	0
.....................................................................................................................................................................................................TAAAGCTAGACAACCATTGAAGT.......................................................................................................................................................................	23	1	28.00	28	0	0	26	2
......................................................................................................................................................................................................AAAGCTAGACAACCATTGAA.........................................................................................................................................................................	20	1	28.00	28	3	0	25	0
.....................................................................................................................................................................................................TAAAGCTAGACAACCATTGA..........................................................................................................................................................................	20	1	27.00	27	6	0	21	0
...................................................................................................................................................................................................CATAAAGCTAGACAACCATTGAA.........................................................................................................................................................................	23	1	26.00	26	0	0	25	1
..................................................................................................................................................................TTTGGTCGTCCAGCCTTAGGTGA..........................................................................................................................................................................................................	23	1	22.00	22	0	0	20	2
....................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAC.........................................................................................................................................................................	22	1	22.00	22	0	0	22	0
.................................................................................................................................................................CTTTGGTCGTCCAGCCTTAG..............................................................................................................................................................................................................	20	1	21.00	21	0	0	21	0
.................................................................................................................................................................CTTTGGTCGTCCAGCCTTAGGTG...........................................................................................................................................................................................................	23	1	21.00	21	4	0	17	0
....................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAAA.......................................................................................................................................................................	24	1	19.00	19	0	0	16	3
....................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAG.........................................................................................................................................................................	22	1	17.00	17	0	0	16	1
....................................................................................................................................................................................................ATAAAGCTAGACAACCATTGG..........................................................................................................................................................................	21	1	16.00	16	1	0	14	1
.............................................................................................................................................TGG-CGGTTGCAATTAGTTT..................................................................................................................................................................................................................................	19	1	16.00	16	1	0	13	2
................................................................................................................................................................TCTTTGGTCGTCCAGCCTTAGGTG...........................................................................................................................................................................................................	24	1	15.00	15	0	0	15	0
.................................................................................................................................................................CTTTGGTCGTCCAGCCTTAGGTGT..........................................................................................................................................................................................................	24	1	13.00	13	0	0	13	0
....................................................................................................................................................................................................ATAAAGCTAGACAACCATTGT..........................................................................................................................................................................	21	1	13.00	13	0	0	12	1
...................................................................................................................................................................................................CATAAAGCTAGACAACCATTGA..........................................................................................................................................................................	22	1	12.00	12	0	0	11	1
......................................................................................................................................................................................................AAAGCTAGACAACCATTGA..........................................................................................................................................................................	19	1	10.00	10	0	0	10	0
....................................................................................................................................................................................................ATAAAGCTAGACAACCATTGC..........................................................................................................................................................................	21	1	8.00	8	0	0	7	1
....................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAGA.......................................................................................................................................................................	24	1	7.00	7	0	0	7	0
................................................................................................................................................................TCTTTGGTCGTCCAGCCTTAGGTGT..........................................................................................................................................................................................................	25	1	6.00	6	0	0	6	0
....................................................................................................................................................................................................ATAAAGCTAGACAACCATTA...........................................................................................................................................................................	20	1	5.00	5	0	0	5	0
.....................................................................................................................................................................................................TAAAGCTAGACAACCATTGAAC........................................................................................................................................................................	22	1	5.00	5	0	0	5	0
....................................................................................................................................................................................................ATAAAGCTAGACAACCAT.............................................................................................................................................................................	18	1	5.00	5	0	0	5	0
...........................................................................................................................................G-TGG-CGGTTGCAATTAGTTT..................................................................................................................................................................................................................................	20	1	4.00	4	1	0	3	0
................................................................................................................................................................TCTTTGGTCGTCCAGCCTTAGGTGAT.........................................................................................................................................................................................................	26	1	4.00	4	0	0	4	0
.....................................................................................................................................................................................................TAAAGCTAGACAACCATTGAAT........................................................................................................................................................................	22	1	4.00	4	0	0	4	0
...................................................................................................................................................................................................CATAAAGCTAGACAACCATTG...........................................................................................................................................................................	21	1	4.00	4	0	0	4	0
......................................................................................................................................................................................................AAAGCTAGACAACCATTG...........................................................................................................................................................................	18	1	4.00	4	0	0	4	0
.......................................................................................................................................................................................................AAGCTAGACAACCATTGAA.........................................................................................................................................................................	19	1	3.00	3	0	0	3	0
.....................................................................................................................................................................................................TAAAGCTAGACAACCATTG...........................................................................................................................................................................	19	1	3.00	3	0	0	3	0
................................................................................................................................................................TCTTTGGTCGTCCAGCCTTA...............................................................................................................................................................................................................	20	1	3.00	3	1	0	2	0
................................................................................................................................................................TCTTTGGTCGTCCAGCCTTAGGA............................................................................................................................................................................................................	23	1	3.00	3	0	0	3	0
......................................................................................................................................................................................................AAAGCTAGACAACCATTGAAG........................................................................................................................................................................	21	1	3.00	3	0	0	3	0
......................................................................................................................................................................................................AAAGCTAGACAACCATTGAAA........................................................................................................................................................................	21	1	3.00	3	0	0	3	0
....................................................................................................................................................................................................ATAAAGCTAGACAACCATTGACC........................................................................................................................................................................	23	1	2.00	2	0	0	2	0
.................................................................................................................................................................................................ATCATAAAGCTAGACAACCATTGAA.........................................................................................................................................................................	25	1	2.00	2	0	0	2	0
....................................................................................................................................................................................................ATAAAGCTAGACAACCATGA...........................................................................................................................................................................	20	1	2.00	2	0	0	2	0
..................................................................................................................................................................................................TCATAAAGCTAGACAACCATTGAA.........................................................................................................................................................................	24	1	2.00	2	0	0	2	0
..................................................................................................................................................................TTTGGTCGTCCAGCCTTAGGT............................................................................................................................................................................................................	21	1	2.00	2	1	0	1	0
..................................................................................................................................................................................................TCATAAAGCTAGACAACCATTGA..........................................................................................................................................................................	23	1	2.00	2	0	0	2	0
.......................................................................................................................................................................................................AAGCTAGACAACCATTGAAGTT......................................................................................................................................................................	22	1	1.00	1	0	0	1	0
...................................................................................................................................................................................................CATAAAGCTAGACAACCATTGAT.........................................................................................................................................................................	23	1	1.00	1	0	0	1	0
...................................................................................................................................................................................................CATAAAGCTAGACAACCATTGAAA........................................................................................................................................................................	24	1	1.00	1	0	0	0	1
..................................................................................................................................................................................................TCATAAAGCTAGACAACCATTGAAA........................................................................................................................................................................	25	1	1.00	1	0	0	1	0
.................................................................................................................................................................CTTTGGTCGTCCAGCCTTAGGTT...........................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0

droYak3

ATG------CTCA----G-------------TGA----AGT-TGC--AAGTGA--------AA------------TTAAT--CA-------G----------------------ATA-----------------C---TG-GGG-CAGTTGCAATTAGTTTCTTTGGTCGTCCAGCCTTAGGTGACTTTTCTGATCATAAAGCTAGACAACCATTGAAGTTCGTTGTGGCATTAGCAGCACCATT-----------------------------------------------------------------ACGG--GTCAA------------GAAATC-----GAG--TTAA-----G------TGTTCC----------------	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
....................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAA.........................................................................................................................................................................	22	1	43469.00	43469	0	30	40260	3149	3	23	4	0	0	0	0
....................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAG........................................................................................................................................................................	23	1	13202.00	13202	0	13	11436	1752	0	1	0	0	0	0	0
....................................................................................................................................................................................................ATAAAGCTAGACAACCATTGA..........................................................................................................................................................................	21	1	11677.00	11677	0	27	9630	2000	4	13	3	0	0	0	0
....................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAA........................................................................................................................................................................	23	1	3785.00	3785	0	1	3453	328	2	1	0	0	0	0	0
....................................................................................................................................................................................................ATAAAGCTAGACAACCATTG...........................................................................................................................................................................	20	1	1936.00	1936	0	4	1756	174	0	2	0	0	0	0	0
.....................................................................................................................................................................................................TAAAGCTAGACAACCATTGAAG........................................................................................................................................................................	22	1	1589.00	1589	0	1	1346	242	0	0	0	0	0	0	0
....................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAT........................................................................................................................................................................	23	1	988.00	988	0	0	941	46	0	1	0	0	0	0	0
....................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAC........................................................................................................................................................................	23	1	701.00	701	0	0	678	23	0	0	0	0	0	0	0
....................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAGT.......................................................................................................................................................................	24	1	574.00	574	0	0	509	65	0	0	0	0	0	0	0
.....................................................................................................................................................................................................TAAAGCTAGACAACCATTGAAGT.......................................................................................................................................................................	23	1	559.00	559	0	0	483	76	0	0	0	0	0	0	0
................................................................................................................................................................TCTTTGGTCGTCCAGCCTTAGGTGA..........................................................................................................................................................................................................	25	1	375.00	375	0	1	67	307	0	0	0	0	0	0	0
....................................................................................................................................................................................................ATAAAGCTAGACAACCAT.............................................................................................................................................................................	18	1	362.00	362	0	0	362	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAC.........................................................................................................................................................................	22	1	357.00	357	0	0	352	5	0	0	0	0	0	0	0
.................................................................................................................................................................CTTTGGTCGTCCAGCCTTAGGTGA..........................................................................................................................................................................................................	24	1	261.00	261	0	0	45	216	0	0	0	0	0	0	0
...................................................................................................................................................................................................CATAAAGCTAGACAACCATTGAA.........................................................................................................................................................................	23	1	255.00	255	0	1	250	4	0	0	0	0	0	0	0
................................................................................................................................................................TCTTTGGTCGTCCAGCCTTAGGTG...........................................................................................................................................................................................................	24	1	254.00	254	0	1	201	52	0	0	0	0	0	0	0
.....................................................................................................................................................................................................TAAAGCTAGACAACCATTGAA.........................................................................................................................................................................	21	1	246.00	246	0	1	237	8	0	0	0	0	0	0	0
................................................................................................................................................................TCTTTGGTCGTCCAGCCTTAGG.............................................................................................................................................................................................................	22	1	245.00	245	1	1	202	41	0	0	0	0	0	0	0
.................................................................................................................................................................CTTTGGTCGTCCAGCCTTAGGTG...........................................................................................................................................................................................................	23	1	120.00	120	0	0	104	16	0	0	0	0	0	0	0
.................................................................................................................................................................CTTTGGTCGTCCAGCCTTAGGT............................................................................................................................................................................................................	22	1	104.00	104	0	0	66	37	0	1	0	0	0	0	0
................................................................................................................................................................TCTTTGGTCGTCCAGCCTTAG..............................................................................................................................................................................................................	21	1	97.00	97	3	0	53	41	0	0	0	0	0	0	0
....................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAAA.......................................................................................................................................................................	24	1	90.00	90	0	0	89	1	0	0	0	0	0	0	0
.....................................................................................................................................................................................................TAAAGCTAGACAACCATTGAAGC.......................................................................................................................................................................	23	1	88.00	88	0	0	88	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................ATAAAGCTAGACAACCAC.............................................................................................................................................................................	18	1	87.00	87	0	0	87	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAGC.......................................................................................................................................................................	24	1	83.00	83	0	0	82	1	0	0	0	0	0	0	0
................................................................................................................................................................TCTTTGGTCGTCCAGCCTTAGGT............................................................................................................................................................................................................	23	1	83.00	83	0	1	47	35	0	0	0	0	0	0	0
....................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAT.........................................................................................................................................................................	22	1	82.00	82	0	0	61	21	0	0	0	0	0	0	0
......................................................................................................................................................................................................AAAGCTAGACAACCATTGAA.........................................................................................................................................................................	20	1	75.00	75	0	0	75	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAGA.......................................................................................................................................................................	24	1	74.00	74	0	0	69	5	0	0	0	0	0	0	0
.....................................................................................................................................................................................................TAAAGCTAGACAACCATTGAAA........................................................................................................................................................................	22	1	70.00	70	0	2	65	3	0	0	0	0	0	0	0
...................................................................................................................................................................................................CATAAAGCTAGACAACCATTGA..........................................................................................................................................................................	22	1	63.00	63	0	0	60	3	0	0	0	0	0	0	0
...................................................................................................................................................................................................CATAAAGCTAGACAACCATTGAAG........................................................................................................................................................................	24	1	56.00	56	0	0	54	2	0	0	0	0	0	0	0
.....................................................................................................................................................................................................TAAAGCTAGACAACCATTGA..........................................................................................................................................................................	20	1	47.00	47	0	1	44	2	0	0	0	0	0	0	0
....................................................................................................................................................................................................ATAAAGCTAGACAACCATT............................................................................................................................................................................	19	1	39.00	39	0	0	29	7	1	2	0	0	0	0	0
....................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAG.........................................................................................................................................................................	22	1	39.00	39	0	0	33	6	0	0	0	0	0	0	0
.................................................................................................................................................................CTTTGGTCGTCCAGCCTTAGG.............................................................................................................................................................................................................	21	1	38.00	38	0	2	30	6	0	0	0	0	0	0	0
.....................................................................................................................................................................................................TAAAGCTAGACAACCATTGAAT........................................................................................................................................................................	22	1	37.00	37	0	1	32	4	0	0	0	0	0	0	0
................................................................................................................................................................................................GATCATAAAGCTAGACAACCATTGAA.........................................................................................................................................................................	26	1	27.00	27	0	0	27	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................TAAAGCTAGACAACCATTGAAC........................................................................................................................................................................	22	1	26.00	26	0	0	25	1	0	0	0	0	0	0	0
......................................................................................................................................................................................................AAAGCTAGACAACCATTGAAG........................................................................................................................................................................	21	1	23.00	23	0	0	22	1	0	0	0	0	0	0	0
.................................................................................................................................................................CTTTGGTCGTCCAGCCTTAGGC............................................................................................................................................................................................................	22	1	22.00	22	0	0	22	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................CATAAAGCTAGACAACCATTGAAA........................................................................................................................................................................	24	1	20.00	20	0	0	20	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................AAAGCTAGACAACCATTGA..........................................................................................................................................................................	19	1	15.00	15	0	0	14	1	0	0	0	0	0	0	0
....................................................................................................................................................................................................ATAAAGCTAGACAACCATTGG..........................................................................................................................................................................	21	1	15.00	15	0	0	10	5	0	0	0	0	0	0	0
.....................................................................................................................................................................................................TAAAGCTAGACAACCATTGAAGA.......................................................................................................................................................................	23	1	15.00	15	0	0	12	3	0	0	0	0	0	0	0
....................................................................................................................................................................................................ATAAAGCTAGACAACCATTGACA........................................................................................................................................................................	23	1	12.00	12	0	0	11	1	0	0	0	0	0	0	0
......................................................................................................................................................................................................AAAGCTAGACAACCATTGAAGT.......................................................................................................................................................................	22	1	12.00	12	0	0	10	2	0	0	0	0	0	0	0
................................................................................................................................................................TCTTTGGTCGTCCAGCCTTAGGC............................................................................................................................................................................................................	23	1	12.00	12	0	0	12	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................TCATAAAGCTAGACAACCATTGAA.........................................................................................................................................................................	24	1	12.00	12	0	0	12	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................AAGCTAGACAACCATTGAA.........................................................................................................................................................................	19	1	10.00	10	0	0	10	0	0	0	0	0	0	0	0
.................................................................................................................................................................CTTTGGTCGTCCAGCCTTAG..............................................................................................................................................................................................................	20	1	10.00	10	0	0	6	4	0	0	0	0	0	0	0
.............................................................................................................................................GGG-CAGTTGCAATTAGTTT..................................................................................................................................................................................................................................	19	1	10.00	10	0	0	4	6	0	0	0	0	0	0	0
.......................................................................................................................................................................................................AAGCTAGACAACCATTGAAGT.......................................................................................................................................................................	21	1	10.00	10	0	0	8	2	0	0	0	0	0	0	0
..................................................................................................................................................................TTTGGTCGTCCAGCCTTAGGTGA..........................................................................................................................................................................................................	23	1	9.00	9	0	0	1	8	0	0	0	0	0	0	0
....................................................................................................................................................................................................ATAAAGCTAGACAACCATTGT..........................................................................................................................................................................	21	1	9.00	9	0	0	5	4	0	0	0	0	0	0	0
....................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAAC.......................................................................................................................................................................	24	1	9.00	9	0	0	9	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................ATAAAGCTAGACAACCATTGACT........................................................................................................................................................................	23	1	8.00	8	0	0	8	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................GCTAGACAACCATTGAAG........................................................................................................................................................................	18	1	7.00	7	0	0	7	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................AAAGCTAGACAACCATTGAAA........................................................................................................................................................................	21	1	7.00	7	0	0	7	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................CATAAAGCTAGACAACCATTGAAT........................................................................................................................................................................	24	1	7.00	7	0	0	7	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................TCATAAAGCTAGACAACCATTGA..........................................................................................................................................................................	23	1	6.00	6	0	0	6	0	0	0	0	0	0	0	0
................................................................................................................................................................................................GATCATAAAGCTAGACAACCATTGA..........................................................................................................................................................................	25	1	6.00	6	0	0	6	0	0	0	0	0	0	0	0
................................................................................................................................................................TCTTTGGTCGTCCAGCCTTA...............................................................................................................................................................................................................	20	1	6.00	6	1	0	4	1	0	0	0	0	0	0	0
.......................................................................................................................................................................................................AAGCTAGACAACCATTGAAG........................................................................................................................................................................	20	1	6.00	6	0	0	5	1	0	0	0	0	0	0	0
................................................................................................................................................................TCTTTGGTCGTCCAGCCTTAGGTGAT.........................................................................................................................................................................................................	26	1	6.00	6	0	0	4	2	0	0	0	0	0	0	0

droEre2

ATG------CACAC--TG-------------TGA----AGT-TGC--GAGTGA--------AA------------A-------------------------CA---------AAAGA---------------TAC---TG-TAG-CGGTTGCAATTAGTTTCTTTGGTCGTCCAGCCTTAGGTGACTTTTCTGATCATAAAGCTAGACAACCATTGAAGTTCGTTGTGGCATCAGCAGCACC--------------------------------------------------------------------AAGA--GTTAG------------CAAATC-----CAG--TTAA-----G------TGATCC----------------	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
....................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAA.........................................................................................................................................................................	22	1	20463.00	20463	1486	16794	0	2164	15	4	0
....................................................................................................................................................................................................ATAAAGCTAGACAACCATTGA..........................................................................................................................................................................	21	1	5807.00	5807	487	4384	1	926	3	6	0
....................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAG........................................................................................................................................................................	23	1	4440.00	4440	297	3478	0	662	1	2	0
....................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAA........................................................................................................................................................................	23	1	1617.00	1617	90	1360	0	164	1	2	0
....................................................................................................................................................................................................ATAAAGCTAGACAACCATTG...........................................................................................................................................................................	20	1	727.00	727	36	596	0	92	0	3	0
.....................................................................................................................................................................................................TAAAGCTAGACAACCATTGAAG........................................................................................................................................................................	22	1	517.00	517	43	376	0	97	0	1	0
.....................................................................................................................................................................................................TAAAGCTAGACAACCATTGAA.........................................................................................................................................................................	21	1	185.00	185	72	100	0	13	0	0	0
...................................................................................................................................................................................................CATAAAGCTAGACAACCATTGAA.........................................................................................................................................................................	23	1	140.00	140	4	133	0	3	0	0	0
....................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAC.........................................................................................................................................................................	22	1	133.00	133	0	126	0	7	0	0	0
....................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAC........................................................................................................................................................................	23	1	123.00	123	4	110	0	9	0	0	0
....................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAT........................................................................................................................................................................	23	1	99.00	99	5	81	0	13	0	0	0
....................................................................................................................................................................................................ATAAAGCTAGACAACCAT.............................................................................................................................................................................	18	1	88.00	88	0	88	0	0	0	0	0
................................................................................................................................................................TCTTTGGTCGTCCAGCCTTAGGTGA..........................................................................................................................................................................................................	25	1	51.00	51	12	6	0	31	1	1	0
................................................................................................................................................................TCTTTGGTCGTCCAGCCTTAGG.............................................................................................................................................................................................................	22	1	48.00	48	23	13	0	12	0	0	0
......................................................................................................................................................................................................AAAGCTAGACAACCATTGAA.........................................................................................................................................................................	20	1	46.00	46	1	44	0	1	0	0	0
.....................................................................................................................................................................................................TAAAGCTAGACAACCATTGAAGT.......................................................................................................................................................................	23	1	43.00	43	1	31	0	11	0	0	0
...................................................................................................................................................................................................CATAAAGCTAGACAACCATTGA..........................................................................................................................................................................	22	1	41.00	41	0	40	0	1	0	0	0
....................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAGT.......................................................................................................................................................................	24	1	41.00	41	1	34	0	6	0	0	0
................................................................................................................................................................TCTTTGGTCGTCCAGCCTTAGGTG...........................................................................................................................................................................................................	24	1	38.00	38	11	15	0	12	0	0	0
.....................................................................................................................................................................................................TAAAGCTAGACAACCATTGA..........................................................................................................................................................................	20	1	36.00	36	16	13	0	7	0	0	0
.................................................................................................................................................................CTTTGGTCGTCCAGCCTTAGGTGA..........................................................................................................................................................................................................	24	1	33.00	33	5	3	0	24	0	1	0
................................................................................................................................................................TCTTTGGTCGTCCAGCCTTAG..............................................................................................................................................................................................................	21	1	31.00	31	7	3	0	21	0	0	0
.....................................................................................................................................................................................................TAAAGCTAGACAACCATTGAAA........................................................................................................................................................................	22	1	29.00	29	3	23	0	3	0	0	0
.................................................................................................................................................................CTTTGGTCGTCCAGCCTTAGGT............................................................................................................................................................................................................	22	1	27.00	27	2	6	0	18	0	1	0
....................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAAA.......................................................................................................................................................................	24	1	24.00	24	2	19	0	3	0	0	0
....................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAT.........................................................................................................................................................................	22	1	23.00	23	2	14	0	7	0	0	0
....................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAGA.......................................................................................................................................................................	24	1	23.00	23	0	21	0	2	0	0	0
...................................................................................................................................................................................................CATAAAGCTAGACAACCATTGAAG........................................................................................................................................................................	24	1	21.00	21	0	20	0	1	0	0	0
................................................................................................................................................................TCTTTGGTCGTCCAGCCTTAGGT............................................................................................................................................................................................................	23	1	19.00	19	3	7	0	9	0	0	0
....................................................................................................................................................................................................ATAAAGCTAGACAACCATT............................................................................................................................................................................	19	1	19.00	19	7	9	0	3	0	0	0
......................................................................................................................................................................................................AAAGCTAGACAACCATTGAAG........................................................................................................................................................................	21	1	16.00	16	1	14	0	1	0	0	0
.................................................................................................................................................................CTTTGGTCGTCCAGCCTTAGGTG...........................................................................................................................................................................................................	23	1	16.00	16	8	6	0	2	0	0	0
....................................................................................................................................................................................................ATAAAGCTAGACAACCATTGG..........................................................................................................................................................................	21	1	11.00	11	5	5	0	1	0	0	0
.................................................................................................................................................................CTTTGGTCGTCCAGCCTTAGG.............................................................................................................................................................................................................	21	1	11.00	11	7	2	0	2	0	0	0
....................................................................................................................................................................................................ATAAAGCTAGACAACCAC.............................................................................................................................................................................	18	2	10.50	21	0	21	0	0	0	0	0
...................................................................................................................................................................................................CATAAAGCTAGACAACCATTGAAA........................................................................................................................................................................	24	1	10.00	10	0	10	0	0	0	0	0
................................................................................................................................................................................................GATCATAAAGCTAGACAACCATTGAA.........................................................................................................................................................................	26	1	8.00	8	0	8	0	0	0	0	0
......................................................................................................................................................................................................AAAGCTAGACAACCATTGA..........................................................................................................................................................................	19	1	8.00	8	0	7	0	1	0	0	0
.....................................................................................................................................................................................................TAAAGCTAGACAACCATTGAAC........................................................................................................................................................................	22	1	8.00	8	0	6	0	2	0	0	0
..................................................................................................................................................................................................TCATAAAGCTAGACAACCATTGAA.........................................................................................................................................................................	24	1	8.00	8	0	7	0	1	0	0	0
....................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAG.........................................................................................................................................................................	22	1	7.00	7	0	3	0	4	0	0	0
....................................................................................................................................................................................................ATAAAGCTAGACAACCATTGACA........................................................................................................................................................................	23	1	7.00	7	0	7	0	0	0	0	0
....................................................................................................................................................................................................ATAAAGCTAGACAACCATTC...........................................................................................................................................................................	20	1	7.00	7	0	6	0	1	0	0	0
.................................................................................................................................................................CTTTGGTCGTCCAGCCTTAG..............................................................................................................................................................................................................	20	1	6.00	6	1	0	0	5	0	0	0
................................................................................................................................................................TCTTTGGTCGTCCAGCCTTA...............................................................................................................................................................................................................	20	1	5.00	5	1	1	0	3	0	0	0
..................................................................................................................................................................TTTGGTCGTCCAGCCTTAGGTGA..........................................................................................................................................................................................................	23	1	5.00	5	2	2	0	1	0	0	0
...................................................................................................................................................................................................CATAAAGCTAGACAACCATTG...........................................................................................................................................................................	21	1	4.00	4	0	4	0	0	0	0	0
....................................................................................................................................................................................................ATAAAGCTAGACAACCATTGT..........................................................................................................................................................................	21	1	4.00	4	0	3	0	1	0	0	0
......................................................................................................................................................................................................AAAGCTAGACAACCATTGAAGT.......................................................................................................................................................................	22	1	4.00	4	1	2	0	1	0	0	0
....................................................................................................................................................................................................ATAAAGCTAGACAACCATTGC..........................................................................................................................................................................	21	1	4.00	4	0	0	0	4	0	0	0
.......................................................................................................................................................................................................AAGCTAGACAACCATTGAA.........................................................................................................................................................................	19	1	4.00	4	0	4	0	0	0	0	0
................................................................................................................................................................TCTTTGGTCGTCCAGCCTTAGGTGAA.........................................................................................................................................................................................................	26	1	3.00	3	2	0	0	1	0	0	0
.....................................................................................................................................................................................................TAAAGCTAGACAACCATTGAAGC.......................................................................................................................................................................	23	1	3.00	3	0	3	0	0	0	0	0
................................................................................................................................................................................................GATCATAAAGCTAGACAACCATTGA..........................................................................................................................................................................	25	1	3.00	3	0	3	0	0	0	0	0
....................................................................................................................................................................................................ATAAAGCTAGACAACCATTGAAGC.......................................................................................................................................................................	24	1	3.00	3	0	2	0	1	0	0	0
................................................................................................................................................................................................GATCATAAAGCTAGACAACCATTGAAG........................................................................................................................................................................	27	1	2.00	2	0	2	0	0	0	0	0
.......................................................................................................................................................................................................AAGCTAGACAACCATTGAAA........................................................................................................................................................................	20	1	2.00	2	0	2	0	0	0	0	0

dgr-mir-4-2

scaffold_5621:2983-3063 +

Known

Unknown

intergenic

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-27.8	-27.8	-27.1