dgr-mir-309-2

GCAAGGATCGCTTAGAGTAACAGAAATAAGTCTAAAAAATATATAATTACATTATATGGCAAACCTTGTTCAGTTTTGACAACTTTGTTTCTGTGCATCATCACTGGGTGAAGTTTGTCGTATAATCGAAATGGATCAGCTAAAAGTTGTACATAAAAATGCTTGCCAAATTTTCA *********************************...............((((((((((((((.(((((((((..(((..((.........))...)))..))))))))).))))))))))))))...............*********************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V109 male body
....................................................................................................GCACTGGGTAAAGTTTGTCCTA......................................................	22	3	4	0.25	1	1
....................................................................................................GCACTGGGTAAAGTTTGTCCT.......................................................	21	3	5	0.20	1	1

CGTTCCTAGCGAATCTCATTGTCTTTATTCAGATTTTTTATATATTAATGTAATATACCGTTTGGAACAAGTCAAAACTGTTGAAACAAAGACACGTAGTAGTGACCCACTTCAAACAGCATATTAGCTTTACCTAGTCGATTTTCAACATGTATTTTTACGAACGGTTTAAAAGT *********************************...............((((((((((((((.(((((((((..(((..((.........))...)))..))))))))).))))))))))))))...............*********************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M041 female body
.............TCTCCTGGTCTTTACTCAGA...............................................................................................................................................	20	3	9	0.11	1	1

Species	Coordinate	ID	Type	Alignment
droGri2	scaffold_5621:2475-2650 +	dgr-mir-309-2	Known_mirbase	GCAAGGATCGCTTAGAGTAAC-AGA-AATAAGT-----------------CTAAA------------A-AATATA-----------------TAATT--ACATTATATGGCAAACCTTGTTCAGTTTTGACA---------------A-CTTTGTTTCTGTGCATCATCACTGGGTGAAGTTTGTCGTATAATC--GAAAT--G--GATCA-GCT---A--------------AA-------------------AGTTGTACA-T-AAAAA---TGCTTGCCAAATTTTCA
droVir3	scaffold_12875:4111769-4111949 +	dvi-mir-309	Known_mirbase	GTAAGGAACCGGCGCAAAGAAG--A-A----GC-----------------CC----------------AA---TA-----------------TAACAA-ATATTATATGGTAAACTTTGTTCAGTTTTGCCA---------------G-GCTCTTT-TTGTGC-GCATCACTGGGTGAAGTTTGTCGTATAATCGCAAAAA--GAACAGCA-AAA---A--------------AAAATAAAAATAAAACAATATTATTAA----ATAAAAA------TACCAGA-ATCTCA
droMoj3	scaffold_6496:20937070-20937244 -	dmo-mir-309	Known_mirbase	GTAAGGATCGG--AGTGGCA-----CA----GT---------------------------------------GCATATATATATATATACAAGAACAGAATATTATAAGGTAAACTTTGTTCAGTTTTGCCG---------------G-GTTCTATGTTGTGC-GCATCACTGGGTGAAGTTTGTCGTATAATCGAAACGA--AACAGCAAGGAA---AAAGTC----------C-------------------AGTCAATTCAA-C-GG-------------AACTCTCG
droWil2	scf2_1100000004514:1652015-1652201 -	dwi_187	confident	GAATAGTTCATCTAA-GAAA-----AA----CT-----------------C--------------AATCATTTCA-----------------T-ATA--ATATTATATGATAAACTTTGTTCAGTTTTGCAATCAAAAAATCAAGAAAATTCCTTA--------GCATCACTGGGTGAAGTTTGTCTTATAATCTTTAAAC--TACAATCA-AAATA------C--------AAT--------------TGGAGTGTTAA----AAAAAAAGGAGAGTAATCGAATTTAGA
dp5	3:12677835-12678011 -	dps-mir-309	Known_mirbase	GTGAGGTGCCCGAAGTGAAGG-AGA-AAAA-GA----------------------AAGAAAAACAAACTATCTCG-----------------GAA----CTATTATACGATAAACTTTGTTCAGTTTTGCCA---------------A-CTTGCTT--------GCAGCACTGGGTGAAGTTTGTCTTATAATCCCACAGTA-AGCGATCA-GCG---AGCGTCTCAGCGCACAT-------------------TGTGAACGA-C-G-A-----------------TACCG
droPer2	scaffold_2:8905649-8905831 +	dpe-mir-309	Known_mirbase	GTGAGGTGCCCGAAGTGAAGG-AGA-AAAA-GA-----AAAAGA-----------AAAAAAAACGAACTATCTCG-----------------GAA----CTATTATACGATAAACTTTGTTCAGTTTTGCCA---------------A-CTTGCTT--------GCAGCACTGGGTGAAGTTTGTCTTATAATCCCACAGTA-AGCGATCA-GCG---AGCGTCTCAGCGCACAT-------------------TGTGAACGA-C-G-A-----------------TACCG
droAna3	scaffold_13266:9731082-9731218 +	dan-mir-309	Known_mirbase	GTGAAGAGCCGCGAGTTACA-----AA----GT--------------------GA-----------A----------------------------GA--TCATTATACGACAAACCTTGTTCGGTTTTGCCA---------------A-TTTCCTA--------GCAGCACTGGGTAAAGTTTGTCCTATAATCTATAAAAAAGCCGTCCA-GAC---A--------------TC-------------------TGTGAGCCC-C-C-AA----C----------------
droBip1	scf7180000396427:874061-874200 +			GTGAAGAGCCGCGAGTTACA-----AA----GT------------------------------------------------------------GAAAG-CCATTATACGACAAACCTTGTTCGGTTTTGCCA---------------A-TTTCCTA--------GCAGCACTGGGTAAAGTTTGTCCTATAATCTCGAAAATGAACGTCCA-GAA---A--------------TC-------------------TGTGAATCC-T-CCG------------------CTCC
droKik1	scf7180000302679:89639-89777 -			GTGAGGTA-AGGC-----------AAA----GT--------------------GA-----------AG--CTTCG-----------------GCAAAG-CAATTATACGACAAACCTTGTTCGGTTTTGCCA---------------A-TTTCCTA--------GCAGCACTGGGTAAAGTTTGTCCTATAATCTCAAAAC--GACGACCA-GCA---A---TC----------C-------------------AGTGAACCA-G-C-AA----A----------------
droFic1	scf7180000454039:848281-848429 -			GTGAAGATCAAAGAGTGAAC----AAA----TA-----------------CTAGA--------------AGCTCC-----------------GAAAAG-CAATTATACGACAAACCTTGTTCGGTTTTGCCA---------------A-TTTCCTA--------GCAGCACTGGGTAAAGTTTGTCCTATAATCTCGAGAA--GACGACCA-GTA---A--------------AG-------------------TGTTAACTA-C-CAAA----A----------------
droEle1	scf7180000491201:2014241-2014401 -			GTGAGGATCCAGCAGTGAAAC-ATAGA----TC---AAAGCAGCAAGCAACTCGA--------------A----G-----------------GAAAAG-CAATTATACGACAAACCTTGTTCGGTTTTGCCA---------------A-TTTCCTA--------GCAGCACTGGGTAAAGTTTGTCCTATAATCTCGAAAA--GACGACCA-TCT-CGA--------------AC-------------------AGTGAATTA-T-C-----------------------G
droRho1	scf7180000780066:73364-73519 +			ATGAGGATCCAGCAGTGAACCAA-AAA----GT-----------------A--------------AATAAGCTCG-----------------GAAAAG-CAATTATACGACAAACCTTGTTCGGTTTTGCAA---------------A-TTTCCTA--------GCAGCACTGGGTAAAGTTTGTCCTATAATCTTGAAAA--GACGACCA-GCT---A--------------AC-------------------TGTGATCAA-A-C-AAA---G------------GCCT
droBia1	scf7180000302143:3060065-3060213 -			GTGACGATCCAGCAGTGAAA----GAA----GT-----------------A--------------AATCAGCTCG-----------------GGACAG-CAATTATACGACAAACCTTGTTCGGTTTTGCCA---------------A-TTTCCTA--------GCAGCACTGGGTAAAGTTTGTCCTATAATCTCGAAAA--GACGACCA-GCA---A--------------AG-------------------TGTGAAGCA-C-CCGA----A----------------
droTak1	scf7180000415384:83762-83911 +			GTGAGGATCCAGCAGTGAAAA---AAA----GT-----------------A--------------AAACAGTTCG-----------------GAACAG-TAATTATACGACAAACCTTGTTCGGTTTTGCCA---------------A-TTTCCTA--------GCAGCACTGGGTAAAGTTTGTCCTATAATCTCGAAAA--GACGACCA-GCT---T--------------AT-------------------TGTGAACCA-A-CCAA----A----------------
droEug1	scf7180000409474:2396576-2396724 +			GTGAAGATCAAGCAGTGAAAAC--AAA---------------------------------------ATCAGTTCG-----------------GAACAG-CAATTATACGACAAACCTTGTTCGGTTTTGCCA---------------A-TTTGCTA------G-TCAGCACTGGGTAAAGTTTGTCCTATAATCCCGATAA--TACAACCA-GCT---A--------------AT-------------------AGTGAATCTAC-CAAA----A----------------
dm3	chr2R:15549176-15549326 -	dme-mir-309	Known_mirbase	GTAAGGATCCCGCAGTGAGAAGC-GAA----GT-----------------CTTAA--------------AGTTTG-----------------GAATAG-CAATTATACGACAAACCTTGTTCGGTTTTGCCA---------------A-TTTCCAA------G-CCAGCACTGGGTAAAGTTTGTCCTATAATCCCGAAAC--GACGACCA-GCT---A--------------AT-------------------TGTGAGCCA-C-C----------------------TA
droSim2	2r:16196445-16196595 -	dsi-mir-309	Known_mirbase	GTGAGGATCTAGTAGTGCAAAG--CAA----GT-----------------CTTAA--------------AGTTTG-----------------GAACAG-CAATTATACGACAAACCTTGTTCGGTTTTGCCA---------------A-TTTCCAA------G-CCAGCACTGGGTAAAGTTTGTCCTATAATCCCGAAAC--GACGACCA-GCT---A--------------AT-------------------TGTGAACCA-C-C-AA----A----------------
droSec2	scaffold_1:13063902-13064053 -	dse-mir-309	Known_mirbase	GTGAGCATCCAGCAGTGAAAAGC-AAT----GT-----------------CTTAA--------------AGTTTG-----------------GAACAG-CAATTATACGACAAACCTTGTTCGGTTTTGCCA---------------A-TTTCCAA------G-CCAGCACTGGGTAAAGTTTGTCCTATAATCCCGAAAC--GACGACCA-GCT---A--------------AT-------------------TGTGAATCA-C-C-AA----A----------------
droYak3	2R:13623455-13623615 +	dya-mir-309	Known_mirbase	GTGATGATCCAGCAGTGAAAACA-AAA----GTATCAAAGC------------AA--------------AGTTTG-----------------GAACAG-CAATTATACGACAAACCTTGTTCTGTTTTGCCA---------------A-TTTCCTA------G-CCAGCACTGGGTAAAGTTTGTCCTATAATCCCGAAAC--GACGACCA-GCAGC------C--------AAG-------------------TGTGAACCA-T-CAAA----G----------------
droEre2	scaffold_4845:9749420-9749570 -	der-mir-309	Known_mirbase	GTGAGGATCCCGCAGTGAAAAGT-AAA----GT-----------------A--------------TACGAGTTTG-----------------GAACAG-CAATTATACGACAAACCTTGTTCGGTTTTGCCA---------------A-TTTCCTA------G-CCAGCACTGGGTAAAGTTTGTCCTATAATCCCGAAAC--GACGACCA-GCC---A--------------AT-------------------TGTGAACCC-A-C----------------------CA

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droGri2

GCAAGGATCGCTTAGAGTAAC-AGA-AATAAGT-----------------CTAAA------------A-AATATA-----------------TAATT--ACATTATATGGCAAACCTTGTTCAGTTTTGACA---------------A-CTTTGTTTCTGTGCATCATCACTGGGTGAAGTTTGTCGTATAATC--GAAAT--G--GATCA-GCT---A--------------AA-------------------AGTTGTACA-T-AAAAA---TGCTTGCCAAATTTTCA	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
No Reads

droVir3

GTAAGGAACCGGCGCAAAGAAG--A-A----GC-----------------CC----------------AA---TA-----------------TAACAA-ATATTATATGGTAAACTTTGTTCAGTTTTGCCA---------------G-GCTCTTT-TTGTGC-GCATCACTGGGTGAAGTTTGTCGTATAATCGCAAAAA--GAACAGCA-AAA---A--------------AAAATAAAAATAAAACAATATTATTAA----ATAAAAA------TACCAGA-ATCTCA	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells	SRR2096013 Ovary_Strain_9_oxidized	SRR2096014 Ovary_Strain_160_oxidized	SRR2096026 embryo_0-2h from 14 day old Strain 9 mothers	SRR2096038 embryo_0-2h from 14 day old Strain 9 mothers	SRR2096050 embryo_0-2h from 14 day old Strain 160 mothers	SRR2096055 Ovary_Min_43	SRR2096056 Ovary_Min_46	SRR2096057 Ovary_Min_50	SRR2096058 Ovary_Min_98	SRR2096059 Ovary_Min_164	SRR2096060 Ovary_Min_193	SRR2096061 embryo_0-2h from 14 day old Strain 160 mothers	SRR2096072 embryo_0-2h from 15to16 day old dysgenic mothers	SRR2096079 embryo_0-2h from 15to16 day old dysgenic mothers	SRR2096080 embryo_0-2h from 15to16 day old nondysgenic mothers	SRR2096081 embryo_0-2h from 15to16 day old nondysgenic mothers
.......................................................................................................................................................................TCACTGGGTGAAGTTTGTCGTA......................................................................................................	22	1	19425.00	19425	0	0	4	5466	0	0	0	0	0	0	0	2	110	664	1	1	0	0	0	0	0	0	0	1	0	1	1	0	2	2	0	2	289	0	433	658	1414	1185	2	0	2	0	58	906	690	320	287	108	226	36	59	31	12	18	16	1	1	0	28	2947	1	3	0	0	0	149	151	1117	3	0	0	1	0	0	789	374	377	225	251
.......................................................................................................................................................................TCACTGGGTGAAGTTTGTCGT.......................................................................................................	21	1	1582.00	1582	0	0	1	437	0	0	0	0	0	0	0	0	1	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	15	1	31	34	51	33	0	0	0	0	0	21	18	35	29	16	33	5	18	10	6	4	4	0	0	0	4	231	1	3	0	0	0	10	6	75	0	1	0	0	0	0	61	150	149	48	35
.......................................................................................................................................................................TCACTGGGTGAAGTTTGTCGTAA.....................................................................................................	23	1	1459.00	1459	2	0	1	135	0	0	0	0	0	0	0	0	1	20	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	39	0	60	68	195	96	0	0	0	0	3	73	56	71	47	45	72	7	22	10	7	5	7	0	0	0	5	295	0	0	0	0	0	4	3	29	0	0	0	0	0	1	25	16	22	8	8
...........................................................................................................TGGTAAACTTTGTTCAGTTTTG..................................................................................................................................................................	22	1	454.00	454	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	46	0	20	67	104	149	0	0	0	0	3	13	6	0	1	0	0	1	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	2	2	12	0	0	0	0	0	0	7	4	0	5	8
.......................................................................................................................................................................TCACTGGGTGAAGTTTGTCGTAT.....................................................................................................	23	1	247.00	247	0	0	1	91	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6	6	12	2	0	0	0	0	0	6	6	7	7	7	11	4	2	7	2	3	0	0	0	0	4	24	0	0	0	0	0	1	2	4	0	0	0	0	0	0	8	11	10	3	0
.......................................................................................................................................................................TCACTGGGTGAAGTTTGTCGTC......................................................................................................	22	1	239.00	239	1	0	0	38	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	3	0	0	0	0	0	0	15	6	24	27	6	14	1	7	7	4	3	5	0	0	0	19	31	0	0	0	0	0	3	2	10	0	0	0	0	1	0	9	0	0	0	0
.......................................................................................................................................................................TCACTGGGTGAAGTTTGTCG........................................................................................................	20	1	76.00	76	0	0	0	23	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	4	1	4	2	0	0	0	0	0	5	4	1	3	2	2	0	1	1	0	0	0	0	0	0	0	7	0	0	0	0	2	0	0	2	0	0	0	0	0	0	1	4	4	0	2
.......................................................................................................................................................................TCACTGGGTGAAGTTTGTCGC.......................................................................................................	21	1	65.00	65	0	0	0	62	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................ACTGGGTGAAGTTTGTCGTA......................................................................................................	20	1	57.00	57	0	0	0	5	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	4	6	10	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	20	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
.......................................................................................................................................................................TCACTGGGTGAAGTTTGTCGTATT....................................................................................................	24	1	49.00	49	0	0	0	15	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	3	2	8	7	4	3	1	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	1	1	0
.......................................................................................................................................................................TCACTGGGTGAAGTTTGTCGTAC.....................................................................................................	23	1	46.00	46	0	0	0	27	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	3	5	0	1	1	0	1	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1
.................................................................................................................................CCA---------------G-GCTCTTT-TTGTGC-GCA............................................................................................................................	20	1	29.00	29	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	2	3	9	8	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................TCACTGGGTGAAGTTTGTCGTT......................................................................................................	22	1	29.00	29	0	0	0	9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	1	2	2	0	2	3	1	1	0	1	0	0	0	0	0	2	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	1	0
......................................................................................................................................................................ATCACTGGGTGAAGTTTGTCGTA......................................................................................................	23	1	21.00	21	0	0	0	10	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	1	1	1	0	0	0	0	0	0	0	0	1	0	0	0	0	2	0	0	0	0	0	0	0	1	0	0	0	0	0	0	1	0	0	0	1
......................................................................................................................................................................ATCACTGGGTGAAGTTTGTCGT.......................................................................................................	22	1	20.00	20	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	2	1	0	0	0	0	0	1	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	1	0	1	0	0	0	0	0	0	3	0	0	0	0
.................................................................................................................................CCA---------------G-GCTCTTT-TTGTGC-GCATCACTGGGTGAAGTTTGTCGTA......................................................................................................	42	1	17.00	17	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	11	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................TCACTGGGTGAAGTTTGTCGTG......................................................................................................	22	1	17.00	17	0	0	0	2	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	1	0	0	0	0	0	0	1	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
.......................................................................................................................................................................TCACTGGGTGAAGTTTGTCGTAG.....................................................................................................	23	1	12.00	12	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	1	0	0	1	1	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1
.......................................................................................................................................................................TCACTGGGTGAAGTTTGTCGTATA....................................................................................................	24	1	12.00	12	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	1	3	0	0	0	1	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1
.......................................................................................................................................................................TCACTGGGTGAAGTTTGTCGTAAC....................................................................................................	24	1	8.00	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	2	1	0	1	1	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................TCACTGGGTGAAGTTTGTCGTCA.....................................................................................................	23	1	8.00	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................TGGTAAACTTTGTTCAGTTTT...................................................................................................................................................................	21	1	8.00	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	3	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
.......................................................................................................................................................................TCACTGGGTGAAGTTTGTCGTATC....................................................................................................	24	1	8.00	8	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	3	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................CACTGGGTGAAGTTTGTCGTA......................................................................................................	21	1	7.00	7	0	0	0	2	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................TCACTGGGTGAAGTTTGTCGTAAT....................................................................................................	24	1	7.00	7	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................TCACTGGGTGAAGTTTGTCGTAAG....................................................................................................	24	1	7.00	7	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	1	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0
.......................................................................................................................................................................TCACTGGGTGAAGTTTGTC.........................................................................................................	19	1	7.00	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	1	0	0	1	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
...........................................................................................................TGGTAAACTTTGTTCAGTTTTGC.................................................................................................................................................................	23	1	5.00	5	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................TCACTGGGTGAAGTTTGTCGTATTT...................................................................................................	25	1	5.00	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	1	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................TGGGTGAAGTTTGTCGTA......................................................................................................	18	1	5.00	5	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................TCACTGGGTGAAGTTTGTCGTATAA...................................................................................................	25	1	5.00	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	1	0	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................TCACTGGGTGAAGTTTGTCGG.......................................................................................................	21	1	5.00	5	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................TGGTAAACTTTGTTCAGTTT....................................................................................................................................................................	20	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
.......................................................................................................................................................................TCACTGGGTGAAGTTTGT..........................................................................................................	18	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................TGGTAAACTTTGTTCAGTTTTGCC................................................................................................................................................................	24	1	3.00	3	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................ACTGGGTGAAGTTTGTCGTAA.....................................................................................................	21	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................ATCACTGGGTGAAGTTTGTCG........................................................................................................	21	1	3.00	3	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1
.......................................................................................................................................................................TCACTGGGTGAAGTTTGTCGTCC.....................................................................................................	23	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................TCACTGGGTGAAGTTTGTCGTAACC...................................................................................................	25	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................TCACTGGGTGAAGTTTGTCGTAATC...................................................................................................	25	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................TCACTGGGTGAAGTTTGTCGTATG....................................................................................................	24	1	2.00	2	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................CTGGGTGAAGTTTGTCGTA......................................................................................................	19	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................TCACTGGGTGAAGTTTGTCGTTA.....................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................TCACTGGGTGAAGTTTGTCGAC......................................................................................................	22	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................AG--A-A----GC-----------------CC----------------AA---TA-----------------TAACAA-AT..............................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................A---------------G-GCTCTTT-TTGTGC-GCA............................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................TCACTGGGTGAAGTTTGTCT........................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................TCACTGGGTGAAGTTTGTCGTGC.....................................................................................................	23	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

GTAAGGATCGG--AGTGGCA-----CA----GT---------------------------------------GCATATATATATATATACAAGAACAGAATATTATAAGGTAAACTTTGTTCAGTTTTGCCG---------------G-GTTCTATGTTGTGC-GCATCACTGGGTGAAGTTTGTCGTATAATCGAAACGA--AACAGCAAGGAA---AAAGTC----------C-------------------AGTCAATTCAA-C-GG-------------AACTCTCG	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
.......................................................................................................................................................................TCACTGGGTGAAGTTTGTCGTA......................................................................................................	22	1	16785.00	16785	5	2349	3	3	14421	4
.......................................................................................................................................................................TCACTGGGTGAAGTTTGTCGT.......................................................................................................	21	1	3875.00	3875	7	291	2	2	3568	5
.......................................................................................................................................................................TCACTGGGTGAAGTTTGTCGTC......................................................................................................	22	1	620.00	620	2	40	1	0	577	0
.......................................................................................................................................................................TCACTGGGTGAAGTTTGTCGC.......................................................................................................	21	1	584.00	584	0	0	0	0	584	0
.......................................................................................................................................................................TCACTGGGTGAAGTTTGTCGTAA.....................................................................................................	23	1	540.00	540	0	162	0	0	377	1
.......................................................................................................................................................................TCACTGGGTGAAGTTTGTCGTAT.....................................................................................................	23	1	347.00	347	0	20	0	0	327	0
.......................................................................................................................................................................TCACTGGGTGAAGTTTGTCG........................................................................................................	20	1	153.00	153	1	28	1	1	122	0
.......................................................................................................................................................................TCACTGGGTGAAGTTTGTCGTAC.....................................................................................................	23	1	77.00	77	0	1	0	0	76	0
.......................................................................................................................................................................TCACTGGGTGAAGTTTGTCGTT......................................................................................................	22	1	64.00	64	0	5	0	0	59	0
.........................................................................................................................................................................ACTGGGTGAAGTTTGTCGTA......................................................................................................	20	1	48.00	48	0	30	0	0	18	0
.............................................................................................................GTAAACTTTGTTCAGTTTTGCC................................................................................................................................................................	22	1	34.00	34	0	0	0	0	34	0
........................................................................................................................................................................CACTGGGTGAAGTTTGTCGTA......................................................................................................	21	1	23.00	23	0	0	0	0	23	0
......................................................................................................................................................................ATCACTGGGTGAAGTTTGTCGT.......................................................................................................	22	1	21.00	21	0	1	0	0	20	0
.......................................................................................................................................................................TCACTGGGTGAAGTTTGTCGG.......................................................................................................	21	1	11.00	11	0	0	0	0	11	0
.......................................................................................................................................................................TCACTGGGTGAAGTTTGTCGTATT....................................................................................................	24	1	11.00	11	0	0	0	0	11	0
......................................................................................................................................................................ATCACTGGGTGAAGTTTGTCG........................................................................................................	21	1	10.00	10	0	2	0	0	8	0
.........................................................................................................................................................................ACTGGGTGAAGTTTGTCGT.......................................................................................................	19	1	10.00	10	0	4	0	0	6	0
.............................................................................................................GTAAACTTTGTTCAGTTTTGC.................................................................................................................................................................	21	1	9.00	9	0	0	0	0	9	0
.......................................................................................................................................................................TCACTGGGTGAAGTTTGTCGTATC....................................................................................................	24	1	9.00	9	0	0	0	0	9	0
.......................................................................................................................................................................TCACTGGGTGAAGTTTGTC.........................................................................................................	19	1	9.00	9	0	1	0	0	8	0
......................................................................................................................................................................ATCACTGGGTGAAGTTTGTCGC.......................................................................................................	22	1	9.00	9	0	0	0	0	9	0
.......................................................................................................................................................................TCACTGGGTGAAGTTTGTCGTG......................................................................................................	22	1	8.00	8	0	4	0	0	4	0
.................................................................................................................................CCG---------------G-GTTCTATGTTGTGC-GCA............................................................................................................................	21	1	8.00	8	0	5	0	0	3	0
..........................................................................................................................................................................CTGGGTGAAGTTTGTCGTA......................................................................................................	19	1	7.00	7	0	0	0	0	7	0
.......................................................................................................................................................................TCACTGGGTGAAGTTTGTCGA.......................................................................................................	21	1	7.00	7	0	0	0	0	7	0
...........................................................................................................................................................................TGGGTGAAGTTTGTCGTA......................................................................................................	18	1	7.00	7	0	2	0	0	5	0
.......................................................................................................................................................................TCACTGGGTGAAGTTTGTCGTATA....................................................................................................	24	1	6.00	6	0	1	0	0	5	0
.......................................................................................................................................................................TCACTGGGTGAAGTTTGTCGAC......................................................................................................	22	1	5.00	5	0	0	0	0	5	0
.......................................................................................................................................................................TCACTGGGTGAAGTTTGTCGTAG.....................................................................................................	23	1	5.00	5	0	3	0	0	2	0
.................................................................................................................................CCG---------------G-GTTCTATGTTGTGC-GC.............................................................................................................................	20	1	5.00	5	0	0	0	0	5	0
...........................................................................................................AGGTAAACTTTGTTCAGTTTTG..................................................................................................................................................................	22	1	5.00	5	0	3	0	0	2	0
...........................................................................................................AGGTAAACTTTGTTCAGTTTT...................................................................................................................................................................	21	1	4.00	4	0	2	0	0	2	0
........................................................................................................................................................................CACTGGGTGAAGTTTGTCGT.......................................................................................................	20	1	4.00	4	0	0	0	0	4	0
.......................................................................................................................................................................TCACTGGGTGAAGTTTGTCTC.......................................................................................................	21	1	3.00	3	0	1	0	0	2	0
.......................................................................................................................................................................TCACTGGGTGAAGTTTGTCGTAAT....................................................................................................	24	1	3.00	3	0	1	0	0	2	0
.......................................................................................................................................................................TCACTGGGTGAAGTTTGTCGTCA.....................................................................................................	23	1	3.00	3	0	3	0	0	0	0
.......................................................................................................................................................................TCACTGGGTGAAGTTTGTCGGC......................................................................................................	22	1	3.00	3	0	1	0	0	2	0
......................................................................................................................................................................ATCACTGGGTGAAGTTTGTCGTC......................................................................................................	23	1	3.00	3	0	0	0	0	3	0
......................................................................................................................................................................ATCACTGGGTGAAGTTTGTCGTA......................................................................................................	23	1	3.00	3	0	1	0	0	2	0
.........................................................................................................................................................................ACTGGGTGAAGTTTGTCGTC......................................................................................................	20	1	2.00	2	0	2	0	0	0	0
..........................................................................................................AAGGTAAACTTTGTTCAGTTTT...................................................................................................................................................................	22	1	2.00	2	0	2	0	0	0	0
.......................................................................................................................................................................TCACTGGGTGAAGTTTGTCTA.......................................................................................................	21	1	2.00	2	0	0	0	0	2	0
......................................................................................................................................................................ATCACTGGGTGAAGTTTGTCT........................................................................................................	21	1	2.00	2	0	0	0	0	2	0
.......................................................................................................................................................................TCACTGGGTGAAGTTTGTCAC.......................................................................................................	21	1	2.00	2	0	0	0	0	2	0
........................................................................................................................................................................CACTGGGTGAAGTTTGTCGTC......................................................................................................	21	1	2.00	2	1	0	0	0	1	0
.......................................................................................................................................................................TCACTGGGTGAAGTTTGTCGTTA.....................................................................................................	23	1	2.00	2	0	2	0	0	0	0
.......................................................................................................................................................................TCACTGGGTGAAGTTTGT..........................................................................................................	18	1	2.00	2	0	0	0	0	2	0
.......................................................................................................................................................................TCACTGGGTGAAGTTTGTCC........................................................................................................	20	1	2.00	2	0	0	0	0	2	0
.......................................................................................................................................................................TCACTGGGTGAAGTTTGTCGTATG....................................................................................................	24	1	2.00	2	0	0	0	0	2	0
...........................................................................................................AGGTAAACTTTGTTCAGTTTTGC.................................................................................................................................................................	23	1	1.00	1	0	0	0	0	1	0
.........................................................................................................................................................................ACTGGGTGAAGTTTGTCGTAA.....................................................................................................	21	1	1.00	1	0	1	0	0	0	0

droWil2

GAATAGTTCATCTAA-GAAA-----AA----CT-----------------C--------------AATCATTTCA-----------------T-ATA--ATATTATATGATAAACTTTGTTCAGTTTTGCAATCAAAAAATCAAGAAAATTCCTTA--------GCATCACTGGGTGAAGTTTGTCTTATAATCTTTAAAC--TACAATCA-AAATA------C--------AAT--------------TGGAGTGTTAA----AAAAAAAGGAGAGTAATCGAATTTAGA	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
.......................................................................................................................................................................TCACTGGGTGAAGTTTGTCTTA......................................................................................................	22	1	12777.00	12777	1	26	0	12735	15
.......................................................................................................................................................................TCACTGGGTGAAGTTTGTCTTAA.....................................................................................................	23	1	3479.00	3479	0	4	0	3470	5
.......................................................................................................................................................................TCACTGGGTGAAGTTTGTCTT.......................................................................................................	21	1	1173.00	1173	0	8	0	1165	0
.........................................................................................................................................................................ACTGGGTGAAGTTTGTCTTA......................................................................................................	20	1	91.00	91	0	0	0	91	0
.......................................................................................................................................................................TCACTGGGTGAAGTTTGTCTTAT.....................................................................................................	23	1	72.00	72	0	1	0	71	0
.......................................................................................................................................................CCTTA--------GCATCACTGGGTGAAG...............................................................................................................	21	1	47.00	47	0	0	0	47	0
.......................................................................................................................................................................TCACTGGGTGAAGTTTGTCTTT......................................................................................................	22	1	35.00	35	0	0	0	35	0
.........................................................................................................................................................................ACTGGGTGAAGTTTGTCTTAA.....................................................................................................	21	1	26.00	26	0	0	0	26	0
.......................................................................................................................................................................TCACTGGGTGAAGTTTGTCTTAC.....................................................................................................	23	1	23.00	23	0	0	0	23	0
..........................................................................................................................................................TA--------GCATCACTGGGTGAAGTTTG...........................................................................................................	22	1	20.00	20	0	0	0	20	0
........................................................................................................................................................................CACTGGGTGAAGTTTGTCTTA......................................................................................................	21	1	19.00	19	0	4	0	15	0
.......................................................................................................................................................CCTTA--------GCATCACTGGGTGAAGT..............................................................................................................	22	1	18.00	18	0	0	0	18	0
...........................................................................................................TGATAAACTTTGTTCAGTTTT...................................................................................................................................................................	21	1	14.00	14	0	0	0	14	0
...............................................................................................................AAACTTTGTTCAGTTTTGCAA...............................................................................................................................................................	21	1	13.00	13	0	0	0	13	0
.......................................................................................................................................................................TCACTGGGTGAAGTTTGTCTTAG.....................................................................................................	23	1	12.00	12	0	0	0	12	0
.......................................................................................................................................................................TCACTGGGTGAAGTTTGTCTTG......................................................................................................	22	1	12.00	12	0	0	0	12	0
..........................................................................................................................................................TA--------GCATCACTGGGTGAAGTTTGC..........................................................................................................	23	1	10.00	10	0	0	0	10	0
.......................................................................................................................................................................TCACTGGGTGAAGTTTGTCTTAAT....................................................................................................	24	1	10.00	10	0	0	0	10	0
..........................................................................................................................................................TA--------GCATCACTGGGTGAAGTTTGT..........................................................................................................	23	1	9.00	9	0	1	0	8	0
.......................................................................................................................................................................TCACTGGGTGAAGTTTGTCT........................................................................................................	20	1	8.00	8	0	0	0	8	0
...............................................................................................................AAACTTTGTTCAGTTTTGCAAT..............................................................................................................................................................	22	1	8.00	8	0	0	0	8	0
.......................................................................................................................................................................TCACTGGGTGAAGTTTGTCTA.......................................................................................................	21	1	7.00	7	0	0	0	7	0
..............................................................................................................TAAACTTTGTTCAGTTTTGCAA...............................................................................................................................................................	22	1	7.00	7	0	0	0	7	0
.........................................................................................................................................................................ACTGGGTGAAGTTTGTCTT.......................................................................................................	19	1	7.00	7	0	0	0	7	0
.........................................................................................................................................................TTA--------GCATCACTGGGTGAAGTTTG...........................................................................................................	23	1	7.00	7	0	0	0	7	0
...........................................................................................................TGATAAACTTTGTTCAGTTTTG..................................................................................................................................................................	22	1	6.00	6	0	1	0	5	0
........................................................................................................................................................................CACTGGGTGAAGTTTGTCTTAA.....................................................................................................	22	1	6.00	6	0	0	0	6	0
......................................................................................................................................................................ATCACTGGGTGAAGTTTGTCT........................................................................................................	21	1	5.00	5	0	0	0	5	0
.......................................................................................................................................................................TCACTGGGTGAAGTTTGTCTTATA....................................................................................................	24	1	5.00	5	0	0	0	5	0
..............................................................................................................TAAACTTTGTTCAGTTTTGCA................................................................................................................................................................	21	1	4.00	4	0	1	0	3	0
.........................................................................................................................................................TTA--------GCATCACTGGGTGAAGTTTGT..........................................................................................................	24	1	4.00	4	0	0	0	4	0
.........................................................................................................................................................TTA--------GCATCACTGGGTGAAGTT.............................................................................................................	21	1	4.00	4	0	0	0	4	0
.......................................................................................................................................................................TCACTGGGTGAAGTTTGTCTTAAG....................................................................................................	24	1	4.00	4	0	0	0	4	0
...................................................................................................................TTTGTTCAGTTTTGCAATCAAA..........................................................................................................................................................	22	1	3.00	3	0	0	0	3	0
.......................................................................................................................................................................TCACTGGGTGAAGTTTGTCTTAAC....................................................................................................	24	1	3.00	3	0	0	0	3	0
......................................................................................................................................................................ATCACTGGGTGAAGTTTGTCTT.......................................................................................................	22	1	3.00	3	0	0	0	3	0
...............................................................................................................AAACTTTGTTCAGTTTTGCAATC.............................................................................................................................................................	23	1	3.00	3	0	0	0	3	0
...........................................................................................................................................................A--------GCATCACTGGGTGAAGTTTG...........................................................................................................	21	1	3.00	3	0	0	0	3	0
..........................................................................................................................................................................CTGGGTGAAGTTTGTCTTAA.....................................................................................................	20	1	3.00	3	0	0	0	3	0
...................................................................................................................TTTGTTCAGTTTTGCAATCAA...........................................................................................................................................................	21	1	3.00	3	0	1	0	2	0
.......................................................................................................................................................................TCACTGGGTGAAGTTTGTC.........................................................................................................	19	1	3.00	3	0	0	0	3	0
.......................................................................................................................................................................TCACTGGGTGAAGTTTGTCTTTA.....................................................................................................	23	1	2.00	2	0	0	0	2	0
..........................................................................................................ATGATAAACTTTGTTCAGTTTT...................................................................................................................................................................	22	1	2.00	2	0	0	0	2	0
...........................................................................................................TGATAAACTTTGTTCAGTTTTGT.................................................................................................................................................................	23	1	2.00	2	0	0	0	2	0
.......................................................................................................................................................................TCACTGGGTGAAGTTTGTCTTGA.....................................................................................................	23	1	2.00	2	0	0	0	2	0
...........................................................................................................................................................................TGGGTGAAGTTTGTCTTA......................................................................................................	18	1	2.00	2	0	0	0	2	0
......................................................................................................................................................TCCTTA--------GCATCACTGGGTGAAGT..............................................................................................................	23	1	2.00	2	0	0	0	2	0
......................................................................................................................................................................ATCACTGGGTGAAGTTTGTCTTT......................................................................................................	23	1	1.00	1	0	0	0	1	0
..........................................................................................................................................................TA--------GCATCACTGGGTGAAGT..............................................................................................................	19	1	1.00	1	0	0	0	1	0
.........................................................................................................................................................TTA--------GCATCACTGGGTGAAGTTTGA..........................................................................................................	24	1	1.00	1	0	0	0	1	0
...................................................................................................................TTTGTTCAGTTTTGCAATCAAAAA........................................................................................................................................................	24	1	1.00	1	0	0	0	1	0
........................................................................................................................................................................CACTGGGTGAAGTTTGTCTT.......................................................................................................	20	1	1.00	1	0	1	0	0	0
.................................................................................................................................CAATCAAAAAATCAAGAAAATTCCTT........................................................................................................................................	26	1	1.00	1	0	0	0	1	0
.......................................................................................................................................................................TCACTGGGTGAAGTTTGTCTTC......................................................................................................	22	1	1.00	1	0	0	0	1	0
.......................................................................................................................................................................TCACTGGGTGAAGTTTGTCTTAGC....................................................................................................	24	1	1.00	1	0	0	0	1	0
.......................................................................................................................................................................TCACTGGGTGAAGTTTGA..........................................................................................................	18	1	1.00	1	0	0	0	1	0
..................................................................................................................CTTTGTTCAGTTTTGCAATCA............................................................................................................................................................	21	1	1.00	1	0	0	0	1	0
...............................................................................................................................................AGAAAATTCCTTA--------GCATCACTGGGTGA.................................................................................................................	27	1	1.00	1	0	0	0	1	0
...........................................................................................................................................................A--------GCATCACTGGGTGAAGTTTGTC.........................................................................................................	23	1	1.00	1	0	0	0	1	0
.........................................................................................................................................................TTA--------GCATCACTGGGTGAAGTTTGC..........................................................................................................	24	1	1.00	1	0	0	0	1	0
......................................................................................................................................................................ATCACTGGGTGAAGTTTGTC.........................................................................................................	20	1	1.00	1	0	0	0	1	0
......................................................................................................................................................TCCTTA--------GCATCACTGGGTGAAGTTTGTC.........................................................................................................	28	1	1.00	1	0	0	0	1	0
...................................................................................................................................ATCAAAAAATCAAGAAAATTCCTTA--------GC.............................................................................................................................	27	1	1.00	1	0	0	0	1	0
.......................................................................................................................................................................TCACTGGGTGAAGTTTGT..........................................................................................................	18	1	1.00	1	0	0	0	1	0
........................................................................................................................................................CTTA--------GCATCACTGGGTGAAG...............................................................................................................	20	1	1.00	1	0	0	0	1	0
..........................................................................................................................................................TA--------GCATCACTGGGTGAAGTT.............................................................................................................	20	1	1.00	1	0	0	0	1	0
.......................................................................................................................................................CCTTA--------GCATCACTGGGTGA.................................................................................................................	19	1	1.00	1	0	0	0	1	0
...................................................................................................................TTTGTTCAGTTTTGCAATC.............................................................................................................................................................	19	1	1.00	1	0	0	0	1	0
.........................................................................................................................................................TTA--------GCATCACTGGGTGAAGTTT............................................................................................................	22	1	1.00	1	0	0	0	1	0
..........................................................................................................................................................TA--------GCATCACTGGGTGAAGTTT............................................................................................................	21	1	1.00	1	0	0	0	1	0
...................................................................................................................TTTGTTCAGTTTTGCAAT..............................................................................................................................................................	18	1	1.00	1	0	0	0	1	0
.......................................................................................................................................................CCTTA--------GCATCACTGGGTGAA................................................................................................................	20	1	1.00	1	0	0	0	1	0
...............................................................................................................AAACTTTGTTCAGTTTTGCA................................................................................................................................................................	20	1	1.00	1	0	0	0	1	0
.......................................................................................................................................................................TCACTGGGTGAAGTTTGTTA........................................................................................................	20	2	0.50	1	0	0	0	1	0

dp5

GTGAGGTGCCCGAAGTGAAGG-AGA-AAAA-GA----------------------AAGAAAAACAAACTATCTCG-----------------GAA----CTATTATACGATAAACTTTGTTCAGTTTTGCCA---------------A-CTTGCTT--------GCAGCACTGGGTGAAGTTTGTCTTATAATCCCACAGTA-AGCGATCA-GCG---AGCGTCTCAGCGCACAT-------------------TGTGAACGA-C-G-A-----------------TACCG	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
.......................................................................................................................................................................GCACTGGGTGAAGTTTGTCTTA......................................................................................................	22	1	2449.00	2449	0	77	1240	0	1132	0	0	0	0	0
.......................................................................................................................................................................GCACTGGGTGAAGTTTGTCTT.......................................................................................................	21	1	480.00	480	0	25	295	0	159	0	1	0	0	0
.......................................................................................................................................................................GCACTGGGTGAAGTTTGTCTTAA.....................................................................................................	23	1	166.00	166	0	7	59	0	98	0	2	0	0	0
.......................................................................................................................................................................GCACTGGGTGAAGTTTGTCT........................................................................................................	20	1	39.00	39	0	6	29	0	4	0	0	0	0	0
......................................................................................................................................................................AGCACTGGGTGAAGTTTGTCTT.......................................................................................................	22	1	35.00	35	0	1	26	0	8	0	0	0	0	0
......................................................................................................................................................................AGCACTGGGTGAAGTTTGTCTTA......................................................................................................	23	1	17.00	17	0	2	8	0	7	0	0	0	0	0
.......................................................................................................................................................................GCACTGGGTGAAGTTTGTCTC.......................................................................................................	21	1	16.00	16	0	0	15	0	1	0	0	0	0	0
.......................................................................................................................................................................GCACTGGGTGAAGTTTGTCTTT......................................................................................................	22	1	13.00	13	0	1	3	0	9	0	0	0	0	0
...........................................................................................................CGATAAACTTTGTTCAGTTTTG..................................................................................................................................................................	22	1	12.00	12	0	3	5	0	4	0	0	0	0	0
......................................................................................................................................................................AGCACTGGGTGAAGTTTGTCT........................................................................................................	21	1	11.00	11	0	1	7	0	3	0	0	0	0	0
.......................................................................................................................................................................GCACTGGGTGAAGTTTGTCTTAT.....................................................................................................	23	1	10.00	10	0	1	4	0	5	0	0	0	0	0
.......................................................................................................................................................................GCACTGGGTGAAGTTTGTCTTAC.....................................................................................................	23	1	9.00	9	0	0	3	0	6	0	0	0	0	0
........................................................................................................................................................................CACTGGGTGAAGTTTGTCTTA......................................................................................................	21	1	8.00	8	0	7	1	0	0	0	0	0	0	0
.......................................................................................................................................................................GCACTGGGTGAAGTTTGTCC........................................................................................................	20	1	8.00	8	0	0	8	0	0	0	0	0	0	0
..........................................................................................................ACGATAAACTTTGTTCAGTTTT...................................................................................................................................................................	22	1	7.00	7	0	1	5	0	1	0	0	0	0	0
.......................................................................................................................................................................GCACTGGGTGAAGTTTGTCTTC......................................................................................................	22	1	6.00	6	0	0	6	0	0	0	0	0	0	0
.......................................................................................................................................................................GCACTGGGTGAAGTTTGTCTTG......................................................................................................	22	1	5.00	5	0	0	0	0	5	0	0	0	0	0
...........................................................................................................CGATAAACTTTGTTCAGTTTT...................................................................................................................................................................	21	1	5.00	5	0	0	3	0	2	0	0	0	0	0
.......................................................................................................................................................................GCACTGGGTGAAGTTTGTC.........................................................................................................	19	1	4.00	4	0	0	4	0	0	0	0	0	0	0
.........................................................................................................TACGATAAACTTTGTTCAGTTTT...................................................................................................................................................................	23	1	3.00	3	0	0	3	0	0	0	0	0	0	0
........................................................................................................................................................................CACTGGGTGAAGTTTGTCTT.......................................................................................................	20	1	3.00	3	0	2	1	0	0	0	0	0	0	0
..........................................................................................................ACGATAAACTTTGTTCAGTTTC...................................................................................................................................................................	22	1	2.00	2	0	0	2	0	0	0	0	0	0	0
.........................................................................................................................................................................ACTGGGTGAAGTTTGTCTTA......................................................................................................	20	1	2.00	2	0	0	2	0	0	0	0	0	0	0
........................................................................................................................................................................CACTGGGTGAAGTTTGTCTTAT.....................................................................................................	22	1	2.00	2	0	0	1	0	1	0	0	0	0	0
......................................................................................................................................................................AGCACTGGGTGAAGTTTGTCC........................................................................................................	21	1	2.00	2	0	0	2	0	0	0	0	0	0	0
..........................................................................................................................................................................CTGGGTGAAGTTTGTCTTA......................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................TACGATAAACTTTGTTCAGTTT....................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0
......................................................................................................................................................................AGCACTGGGTGAAGTTTGTC.........................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0
.......................................................................................................................................................................GCACTGGGTGAAGTTTGTCTTAAG....................................................................................................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0
...........................................................................................................CGATAAACTTTGTTCAGTTT....................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	1	0
.......................................................................................................................................................................GCACTGGGTGAAGTTTGTCTTCA.....................................................................................................	23	1	1.00	1	0	0	0	0	1	0	0	0	0	0
.......................................................................................................................................................................GCACTGGGTGAAGTTTGTCTTATT....................................................................................................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0
......................................................................................................................................................................AGCACTGGGTGAAGTTTGTCTTT......................................................................................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0
...........................................................................................................CGATAAACTTTGTTCAGTTTTGT.................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0
..........................................................................................................................................................................CTGGGTGAAGTTTGTCTTAA.....................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0
.......................................................................................................................................................................GCACTGGGTGAAGTTTGTCTG.......................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0
............................................................................................................GATAAACTTTGTTCAGTTTTG..................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................................CGATAAACTTTGTTCAGTTTTGC.................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0
.......................................................................................................................................................................GCACTGGGTGAAGTTTGTCTTCC.....................................................................................................	23	1	1.00	1	0	0	0	0	1	0	0	0	0	0

droPer2

GTGAGGTGCCCGAAGTGAAGG-AGA-AAAA-GA-----AAAAGA-----------AAAAAAAACGAACTATCTCG-----------------GAA----CTATTATACGATAAACTTTGTTCAGTTTTGCCA---------------A-CTTGCTT--------GCAGCACTGGGTGAAGTTTGTCTTATAATCCCACAGTA-AGCGATCA-GCG---AGCGTCTCAGCGCACAT-------------------TGTGAACGA-C-G-A-----------------TACCG	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
.......................................................................................................................................................................GCACTGGGTGAAGTTTGTCTTA......................................................................................................	22	1	207.00	207	15	10	171	0	10	1
.......................................................................................................................................................................GCACTGGGTGAAGTTTGTCTT.......................................................................................................	21	1	48.00	48	6	1	38	0	2	1
.......................................................................................................................................................................GCACTGGGTGAAGTTTGTCTTAA.....................................................................................................	23	1	23.00	23	0	2	18	0	2	1
.......................................................................................................................................................................GCACTGGGTGAAGTTTGTCT........................................................................................................	20	1	5.00	5	1	0	2	0	2	0
......................................................................................................................................................................AGCACTGGGTGAAGTTTGTCTT.......................................................................................................	22	1	5.00	5	1	1	3	0	0	0
.......................................................................................................................................................................GCACTGGGTGAAGTTTGTCTTT......................................................................................................	22	1	2.00	2	0	0	2	0	0	0
.......................................................................................................................................................................GCACTGGGTGAAGTTTGTCTTAT.....................................................................................................	23	1	2.00	2	0	0	1	0	1	0
...........................................................................................................CGATAAACTTTGTTCAGTTTTG..................................................................................................................................................................	22	1	2.00	2	0	0	2	0	0	0
.......................................................................................................................................................................GCACTGGGTGAAGTTTGTC.........................................................................................................	19	1	1.00	1	0	0	1	0	0	0
.......................................................................................................................................................................GCACTGGGTGAAGTTTGTCTA.......................................................................................................	21	1	1.00	1	0	0	1	0	0	0
......................................................................................................................................................................AGCACTGGGTGAAGTTTGTCT........................................................................................................	21	1	1.00	1	0	0	1	0	0	0
.......................................................................................................................................................................GCACTGGGTGAAGTTTGTCTTG......................................................................................................	22	1	1.00	1	0	0	1	0	0	0
.........................................................................................................................................................................ACTGGGTGAAGTTTGTCTTA......................................................................................................	20	1	1.00	1	0	0	1	0	0	0
.......................................................................................................................................................................GCACTGGGTGAAGTTTGTCC........................................................................................................	20	1	1.00	1	1	0	0	0	0	0
...........................................................................................................CGATAAACTTTGTTCAGTTTT...................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
.......................................................................................................................................................................GCACTGGGTGAAGTTTGTCTTC......................................................................................................	22	1	1.00	1	0	0	0	0	1	0

droAna3

GTGAAGAGCCGCGAGTTACA-----AA----GT--------------------GA-----------A----------------------------GA--TCATTATACGACAAACCTTGTTCGGTTTTGCCA---------------A-TTTCCTA--------GCAGCACTGGGTAAAGTTTGTCCTATAATCTATAAAAAAGCCGTCCA-GAC---A--------------TC-------------------TGTGAGCCC-C-C-AA----C----------------	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
.......................................................................................................................................................................GCACTGGGTAAAGTTTGTCCTA......................................................................................................	22	1	207.00	207	24	92	74	10	2	5
.......................................................................................................................................................................GCACTGGGTAAAGTTTGTCCT.......................................................................................................	21	1	150.00	150	15	79	48	5	1	2
.......................................................................................................................................................................GCACTGGGTAAAGTTTGTCCC.......................................................................................................	21	1	19.00	19	0	19	0	0	0	0
.......................................................................................................................................................................GCACTGGGTAAAGTTTGTCC........................................................................................................	20	1	15.00	15	0	13	2	0	0	0
......................................................................................................................................................................AGCACTGGGTAAAGTTTGTCCT.......................................................................................................	22	1	7.00	7	0	5	1	1	0	0
........................................................................................................................................................................CACTGGGTAAAGTTTGTCCTA......................................................................................................	21	1	4.00	4	3	1	0	0	0	0
.......................................................................................................................................................................GCACTGGGTAAAGTTTGTCCTAT.....................................................................................................	23	1	3.00	3	0	1	2	0	0	0
..............................................................................................................CAAACCTTGTTCGGTTTTGC.................................................................................................................................................................	20	1	2.00	2	0	1	0	1	0	0
........................................................................................................................................................................CACTGGGTAAAGTTTGTCCT.......................................................................................................	20	1	2.00	2	2	0	0	0	0	0
.......................................................................................................................................................................GCACTGGGTAAAGTTTGT..........................................................................................................	18	1	1.00	1	0	1	0	0	0	0
...........................................................................................................CGACAAACCTTGTTCGGTTTT...................................................................................................................................................................	21	1	1.00	1	0	0	1	0	0	0
.......................................................................................................................................................................GCACTGGGTAAAGTTTGTCCTT......................................................................................................	22	1	1.00	1	0	0	1	0	0	0
.......................................................................................................................................................................GCACTGGGTAAAGTTTGTCCTAG.....................................................................................................	23	1	1.00	1	0	1	0	0	0	0
......................................................................................................................................................................AGCACTGGGTAAAGTTTGTCC........................................................................................................	21	1	1.00	1	0	0	1	0	0	0
...........................................................................................................CGACAAACCTTGTTCGGTTTTT..................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0
........................................................................................................ATACGACAAACCTTGTTCGGTT.....................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0
.......................................................................................................................................................................GCACTGGGTAAAGTTTGC..........................................................................................................	18	1	1.00	1	0	1	0	0	0	0
.........................................................................................................................................................................ACTGGGTAAAGTTTGTCCT.......................................................................................................	19	1	1.00	1	0	1	0	0	0	0
.......................................................................................................................................................................GCACTGGGTAAAGTTTGTCCG.......................................................................................................	21	1	1.00	1	0	1	0	0	0	0
...........................................................................................................CGACAAACCTTGTTCGGTTTTG..................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	1
..........................................................................................................ACGACAAACCTTGTTCGGTTT....................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0

droBip1

GTGAAGAGCCGCGAGTTACA-----AA----GT------------------------------------------------------------GAAAG-CCATTATACGACAAACCTTGTTCGGTTTTGCCA---------------A-TTTCCTA--------GCAGCACTGGGTAAAGTTTGTCCTATAATCTCGAAAATGAACGTCCA-GAA---A--------------TC-------------------TGTGAATCC-T-CCG------------------CTCC	Size	Hit Count	Total Norm	Total
No Reads

droKik1

GTGAGGTA-AGGC-----------AAA----GT--------------------GA-----------AG--CTTCG-----------------GCAAAG-CAATTATACGACAAACCTTGTTCGGTTTTGCCA---------------A-TTTCCTA--------GCAGCACTGGGTAAAGTTTGTCCTATAATCTCAAAAC--GACGACCA-GCA---A---TC----------C-------------------AGTGAACCA-G-C-AA----A----------------	Size	Hit Count	Total Norm	Total
No Reads

droFic1

GTGAAGATCAAAGAGTGAAC----AAA----TA-----------------CTAGA--------------AGCTCC-----------------GAAAAG-CAATTATACGACAAACCTTGTTCGGTTTTGCCA---------------A-TTTCCTA--------GCAGCACTGGGTAAAGTTTGTCCTATAATCTCGAGAA--GACGACCA-GTA---A--------------AG-------------------TGTTAACTA-C-CAAA----A----------------	Size	Hit Count	Total Norm	Total
No Reads

droEle1

GTGAGGATCCAGCAGTGAAAC-ATAGA----TC---AAAGCAGCAAGCAACTCGA--------------A----G-----------------GAAAAG-CAATTATACGACAAACCTTGTTCGGTTTTGCCA---------------A-TTTCCTA--------GCAGCACTGGGTAAAGTTTGTCCTATAATCTCGAAAA--GACGACCA-TCT-CGA--------------AC-------------------AGTGAATTA-T-C-----------------------G	Size	Hit Count	Total Norm	Total
No Reads

droRho1

ATGAGGATCCAGCAGTGAACCAA-AAA----GT-----------------A--------------AATAAGCTCG-----------------GAAAAG-CAATTATACGACAAACCTTGTTCGGTTTTGCAA---------------A-TTTCCTA--------GCAGCACTGGGTAAAGTTTGTCCTATAATCTTGAAAA--GACGACCA-GCT---A--------------AC-------------------TGTGATCAA-A-C-AAA---G------------GCCT	Size	Hit Count	Total Norm	Total
No Reads

droBia1

GTGACGATCCAGCAGTGAAA----GAA----GT-----------------A--------------AATCAGCTCG-----------------GGACAG-CAATTATACGACAAACCTTGTTCGGTTTTGCCA---------------A-TTTCCTA--------GCAGCACTGGGTAAAGTTTGTCCTATAATCTCGAAAA--GACGACCA-GCA---A--------------AG-------------------TGTGAAGCA-C-CCGA----A----------------	Size	Hit Count	Total Norm	Total
No Reads

droTak1

GTGAGGATCCAGCAGTGAAAA---AAA----GT-----------------A--------------AAACAGTTCG-----------------GAACAG-TAATTATACGACAAACCTTGTTCGGTTTTGCCA---------------A-TTTCCTA--------GCAGCACTGGGTAAAGTTTGTCCTATAATCTCGAAAA--GACGACCA-GCT---T--------------AT-------------------TGTGAACCA-A-CCAA----A----------------	Size	Hit Count	Total Norm	Total
No Reads

droEug1

GTGAAGATCAAGCAGTGAAAAC--AAA---------------------------------------ATCAGTTCG-----------------GAACAG-CAATTATACGACAAACCTTGTTCGGTTTTGCCA---------------A-TTTGCTA------G-TCAGCACTGGGTAAAGTTTGTCCTATAATCCCGATAA--TACAACCA-GCT---A--------------AT-------------------AGTGAATCTAC-CAAA----A----------------	Size	Hit Count	Total Norm	Total
No Reads

dm3

GTAAGGATCCCGCAGTGAGAAGC-GAA----GT-----------------CTTAA--------------AGTTTG-----------------GAATAG-CAATTATACGACAAACCTTGTTCGGTTTTGCCA---------------A-TTTCCAA------G-CCAGCACTGGGTAAAGTTTGTCCTATAATCCCGAAAC--GACGACCA-GCT---A--------------AT-------------------TGTGAGCCA-C-C----------------------TA	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
.......................................................................................................................................................................GCACTGGGTAAAGTTTGTCCTA......................................................................................................	22	1	372749.00	372749	0	0	0	0	2	1	172	564	46	10	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6	0	0	5	1	4	4	0	2	2518	1	2	0	0	0	1	0	3	0	0	0	4	0	1	1	4	0	4	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	18469	5024	2099	1426	6539	4	3	3	4	7	51	1	0	18	9	0	3	2	8	12	180	0	16	7	12	949	1126	6	1	0	1410	29	14	1171	0	5	0	0	0	0	2	1	3	0	0	0	2	3	0	0	0	0	0	0	0	0	0	0	1503	16881	19323	10097	970	23	6	2	4	11	11	15	6	2	2	0	0	0	0	0	0	0	0	0	4	0	31	18	0	5	0	0	3	5	1	4	5	0	1	0	0	28	0	3	0	0	8	0	0	6	21	0	0	0	0	0	0	3	0	0	0	0	0	16	2	2	0	2	0	0	0	2	0	0	1	2	1	2	0	4	0	7	0	44	0	10	2	0	0	1	0	0	0	0	4429	2361	1	0	1	0	1	0	0	1	0	0	11	0	0	0	0	1	66	0	0	0	0	1	0	0	0	1	3	0	1	0	0	0	0	19	3	45	31	115	14	86	0	0	0	0	0	7	0	0	6	272737	500	8	40	23	1	2	6	3	19	0	1	0	1	1	6	5	11	10	2	2	13	3	5	2	2	11	4	3	1	1	7	3	31	3	994	2	0	1	1	0	3	0
.......................................................................................................................................................................GCACTGGGTAAAGTTTGTCCT.......................................................................................................	21	1	86538.00	86538	0	0	0	0	1	0	4	39	23	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1074	1	1	0	1	0	0	0	1	0	8	0	0	0	0	0	1	3	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	863	380	596	696	200	0	0	0	0	0	5	2	0	8	0	0	2	0	3	1	4	0	0	0	1	39	42	3	0	0	230	4	1	75	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	703	5092	6445	3644	171	40	1	0	1	3	11	3	2	0	1	0	0	0	0	0	2	0	0	0	0	0	0	4	0	1	0	0	1	0	0	1	0	0	0	0	0	0	0	0	1	0	1	0	0	1	5	0	0	0	2	0	0	10	0	0	0	0	0	9	1	0	0	4	0	0	0	0	0	0	1	1	0	4	0	4	1	3	0	35	0	5	1	0	0	0	0	0	0	0	1020	699	2	0	1	0	0	0	0	0	1	0	1	1	0	0	0	5	23	1	0	0	0	1	1	0	1	4	0	1	6	1	0	0	12	44	4	16	7	44	3	58	0	3	2	2	1	3	2	2	1	62622	379	1	4	27	0	0	2	4	14	3	1	3	0	0	10	1	8	15	6	11	8	4	7	2	1	20	2	1	3	4	11	5	11	3	831	3	0	0	2	2	3	0
.......................................................................................................................................................................GCACTGGGTAAAGTTTGTCC........................................................................................................	20	1	5469.00	5469	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	3897	0	0	0	0	0	0	0	3	0	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	1	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	47	129	179	139	8	9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	1	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	2	0	0	0	1	0	0	0	0	0	0	0	0	0	0	36	29	0	0	0	0	1	0	0	0	0	0	0	0	1	0	0	2	0	1	0	0	1	0	1	0	0	0	0	0	0	0	0	0	1	8	0	0	3	5	1	2	0	1	0	1	0	0	0	0	0	855	24	0	0	4	0	0	1	0	0	0	0	0	0	0	2	1	0	0	2	2	1	0	0	0	0	3	0	0	0	2	2	2	3	1	28	0	0	0	0	3	0	0
...........................................................................................................CGACAAACCTTGTTCGGTTTTG..................................................................................................................................................................	22	1	4921.00	4921	0	0	0	0	0	0	21	34	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	2	0	0	0	1	16	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	745	218	60	62	615	0	0	0	1	0	2	0	0	0	0	0	0	3	1	0	37	0	4	1	0	58	122	5	0	0	67	9	2	60	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	502	693	1130	155	55	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	7	0	3	0	0	0	0	2	0	1	1	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	5	2	21	26	3	0	0	0	0	37	28	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	82	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................GCACTGGGTAAAGTTTGTCCTAA.....................................................................................................	23	1	1848.00	1848	0	0	0	0	0	0	1	5	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	36	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	151	67	62	41	41	0	0	0	0	0	1	0	0	3	0	0	0	0	0	0	0	0	0	0	0	12	8	5	0	0	17	0	1	20	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	18	211	248	29	0	0	0	1	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	18	10	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	2	0	2	0	1	0	0	0	0	0	0	0	0	0	814	1	0	0	1	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6	0	0	0	0	0	0	0
.......................................................................................................................................................................GCACTGGGTAAAGTTTGTCCTC......................................................................................................	22	1	1533.00	1533	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	14	3	1	2	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	7	34	53	59	11	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	10	9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1311	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................GCACTGGGTAAAGTTTGTC.........................................................................................................	19	1	1527.00	1527	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	455	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	8	0	3	4	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	28	84	75	129	13	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	41	40	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	605	6	0	0	6	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	1	0	0	1	0	0	0	0	0	0	0	0	6	0	0	0	0	0	0	0
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.......................................................................................................................................................................GCACTGGGTAAAGTTTGTCCTATT....................................................................................................	24	1	49.00	49	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	12	10	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	17	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................AGCACTGGGTAAAGTTTGTCCTA......................................................................................................	23	1	49.00	49	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	11	0	0	3	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	26	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................CGACAAACCTTGTTCGGTTT....................................................................................................................................................................	20	1	48.00	48	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	42	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................GCACTGGGTAAAGTTTGTG.........................................................................................................	19	1	38.00	38	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	38	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................GCACTGGGTAAAGTTTGTCCA.......................................................................................................	21	1	37.00	37	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	10	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	20	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
...........................................................................................................................................................................TGGGTAAAGTTTGTCCTA......................................................................................................	18	1	35.00	35	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	6	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	19	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

GTGAGGATCTAGTAGTGCAAAG--CAA----GT-----------------CTTAA--------------AGTTTG-----------------GAACAG-CAATTATACGACAAACCTTGTTCGGTTTTGCCA---------------A-TTTCCAA------G-CCAGCACTGGGTAAAGTTTGTCCTATAATCCCGAAAC--GACGACCA-GCT---A--------------AT-------------------TGTGAACCA-C-C-AA----A----------------	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
.......................................................................................................................................................................GCACTGGGTAAAGTTTGTCCTA......................................................................................................	22	1	37772.00	37772	1	0	4	2	1	15	128	48	19303	17295	1	974	0	0	0	0	0
.......................................................................................................................................................................GCACTGGGTAAAGTTTGTCCT.......................................................................................................	21	1	1373.00	1373	0	0	11	0	0	3	7	4	401	339	2	606	0	0	0	0	0
...........................................................................................................CGACAAACCTTGTTCGGTTTTG..................................................................................................................................................................	22	1	406.00	406	1	0	380	1	0	0	0	0	1	3	0	20	0	0	0	0	0
.......................................................................................................................................................................GCACTGGGTAAAGTTTGTCCTAA.....................................................................................................	23	1	48.00	48	0	0	0	0	0	0	0	0	18	25	0	5	0	0	0	0	0
............................................................................................................................................................................GGGTAAAGTTTGTCCTA......................................................................................................	17	1	37.00	37	0	0	0	0	0	0	0	0	6	31	0	0	0	0	0	0	0
.........................................................................................................................................................................ACTGGGTAAAGTTTGTCCTA......................................................................................................	20	1	36.00	36	0	0	0	0	0	0	0	0	27	8	0	1	0	0	0	0	0
.......................................................................................................................................................................GCACTGGGTAAAGTTTGTCC........................................................................................................	20	1	33.00	33	0	0	0	0	0	0	0	0	2	5	0	26	0	0	0	0	0
..........................................................................................................................................................................CTGGGTAAAGTTTGTCCTA......................................................................................................	19	1	30.00	30	0	0	0	0	0	0	0	0	11	19	0	0	0	0	0	0	0
........................................................................................................................................................................CACTGGGTAAAGTTTGTCCTA......................................................................................................	21	1	26.00	26	0	0	0	1	0	0	0	0	16	9	0	0	0	0	0	0	0
.............................................................................................................................................................................GGTAAAGTTTGTCCTA......................................................................................................	16	1	23.00	23	0	0	0	0	0	0	0	0	7	16	0	0	0	0	0	0	0
...........................................................................................................CGACAAACCTTGTTCGGTTTT...................................................................................................................................................................	21	1	18.00	18	0	0	0	0	0	0	0	0	8	5	0	5	0	0	0	0	0
.......................................................................................................................................................................GCACTGGGTAAAGTTTGTCCTC......................................................................................................	22	1	14.00	14	0	0	0	0	0	0	0	0	6	7	0	1	0	0	0	0	0
..............................................................................................................................................................................GTAAAGTTTGTCCTA......................................................................................................	15	1	13.00	13	0	0	0	0	0	0	0	0	3	10	0	0	0	0	0	0	0
...........................................................................................................................................................................TGGGTAAAGTTTGTCCTA......................................................................................................	18	1	12.00	12	0	0	0	0	0	0	0	0	5	7	0	0	0	0	0	0	0
.......................................................................................................................................................................GCACTGGGTAAAGTTTGTC.........................................................................................................	19	1	11.00	11	0	0	0	0	0	1	0	0	0	0	0	10	0	0	0	0	0
.......................................................................................................................................................................GCACTGGGTAAAGTTTGTCCTG......................................................................................................	22	1	8.00	8	0	0	0	0	0	0	0	0	3	4	0	1	0	0	0	0	0
.......................................................................................................................................................................GCACTGGGTAAAGTTTGTCCTT......................................................................................................	22	1	8.00	8	0	0	0	0	0	0	0	0	4	1	0	3	0	0	0	0	0
.....................................................................................................................................................................CAGCACTGGGTAAAGTTTGTCCT.......................................................................................................	23	1	8.00	8	0	0	2	0	0	0	0	0	1	4	0	1	0	0	0	0	0
.......................................................................................................................................................................GCACTGGGTAAAGTTTGTCCTAT.....................................................................................................	23	1	6.00	6	0	0	0	0	0	0	0	0	0	4	0	2	0	0	0	0	0
.......................................................................................................................................................................GCACTGGGTAAAGTTTGT..........................................................................................................	18	1	6.00	6	0	0	0	0	0	0	0	0	4	2	0	0	0	0	0	0	0
....................................................................................................................................................................CCAGCACTGGGTAAAGTTTGTC.........................................................................................................	22	1	5.00	5	0	0	0	0	0	0	0	0	4	1	0	0	0	0	0	0	0
...........................................................................................................CGACAAACCTTGTTCGGTTTTGT.................................................................................................................................................................	23	1	4.00	4	0	0	2	0	0	0	0	0	0	0	0	2	0	0	0	0	0
.........................................................................................................................................................................ACTGGGTAAAGTTTGTCCT.......................................................................................................	19	1	4.00	4	0	0	0	0	0	0	0	0	2	1	0	1	0	0	0	0	0
....................................................................................................................................................................CCAGCACTGGGTAAAGTTTGTCCTA......................................................................................................	25	1	4.00	4	0	0	0	0	0	0	0	0	3	1	0	0	0	0	0	0	0
......................................................................................................................................................................AGCACTGGGTAAAGTTTGTCCTA......................................................................................................	23	1	4.00	4	0	0	0	0	0	0	0	0	3	1	0	0	0	0	0	0	0
.............................................................................................................................................................................GGTAAAGTTTGTCCT.......................................................................................................	15	1	3.00	3	0	0	0	0	0	0	0	0	1	2	0	0	0	0	0	0	0
.......................................................................................................................................................................GCACTGGGTAAAGTTTGTCCC.......................................................................................................	21	1	3.00	3	0	0	0	0	0	0	0	0	1	0	0	2	0	0	0	0	0
......................................................................................................................................................................AGCACTGGGTAAAGTTTGTCCT.......................................................................................................	22	1	3.00	3	0	0	0	0	0	0	0	0	0	2	0	1	0	0	0	0	0
..........................................................................................................ACGACAAACCTTGTTCGGTTTT...................................................................................................................................................................	22	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................GCACTGGGTAAAGTTTGTCCA.......................................................................................................	21	1	2.00	2	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0
...........................................................................................................CGACAAACCTTGTTCGGTTTTA..................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................GCACTGGGTAAAGTT.............................................................................................................	15	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................TGGGTAAAGTTTGTCCT.......................................................................................................	17	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................CAGCACTGGGTAAAGTTTGTC.........................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................CACTGGGTAAAGTTTGTCCTAT.....................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
...........................................................................................................CGACAAACCTTGTTCGGT......................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
.......................................................................................................................................................................GCACTGGGTAAAGTTTGTCCG.......................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................GCACTGGGTAAAGTTTGTCTA.......................................................................................................	21	2	1.00	2	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0
.......................................................................................................................................................................GCACTGGGTAAAGTTTGTCCTAC.....................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
........................................................................................................................................................................CACTGGGTAAAGTTTGTCCT.......................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
...........................................................................................................CGACAAACCTTGTTC.........................................................................................................................................................................	15	3	0.33	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0

droSec2

GTGAGCATCCAGCAGTGAAAAGC-AAT----GT-----------------CTTAA--------------AGTTTG-----------------GAACAG-CAATTATACGACAAACCTTGTTCGGTTTTGCCA---------------A-TTTCCAA------G-CCAGCACTGGGTAAAGTTTGTCCTATAATCCCGAAAC--GACGACCA-GCT---A--------------AT-------------------TGTGAATCA-C-C-AA----A----------------	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
.......................................................................................................................................................................GCACTGGGTAAAGTTTGTCCTA......................................................................................................	22	1	7841.00	7841	63	5	7493	280
.......................................................................................................................................................................GCACTGGGTAAAGTTTGTCCT.......................................................................................................	21	1	2496.00	2496	17	2	2371	106
.......................................................................................................................................................................GCACTGGGTAAAGTTTGTCC........................................................................................................	20	1	146.00	146	0	0	143	3
...........................................................................................................CGACAAACCTTGTTCGGTTTTG..................................................................................................................................................................	22	1	106.00	106	2	0	103	1
.......................................................................................................................................................................GCACTGGGTAAAGTTTGTC.........................................................................................................	19	1	51.00	51	0	1	49	1
.......................................................................................................................................................................GCACTGGGTAAAGTTTGTCCTAA.....................................................................................................	23	1	33.00	33	0	0	32	1
.......................................................................................................................................................................GCACTGGGTAAAGTTTGTCCTAT.....................................................................................................	23	1	24.00	24	0	0	24	0
......................................................................................................................................................................AGCACTGGGTAAAGTTTGTCCT.......................................................................................................	22	1	12.00	12	0	0	12	0
.........................................................................................................................................................................ACTGGGTAAAGTTTGTCCTA......................................................................................................	20	1	11.00	11	0	0	11	0
.......................................................................................................................................................................GCACTGGGTAAAGTTTGTCCTAC.....................................................................................................	23	1	10.00	10	0	0	10	0
...........................................................................................................CGACAAACCTTGTTCGGTTTT...................................................................................................................................................................	21	1	8.00	8	0	0	8	0
.......................................................................................................................................................................GCACTGGGTAAAGTTTGTCCTG......................................................................................................	22	1	7.00	7	0	0	7	0
........................................................................................................................................................................CACTGGGTAAAGTTTGTCCTA......................................................................................................	21	1	4.00	4	3	0	1	0
.......................................................................................................................................................................GCACTGGGTAAAGTTTGTCCC.......................................................................................................	21	1	4.00	4	0	0	4	0
.......................................................................................................................................................................GCACTGGGTAAAGTTTGTCCTT......................................................................................................	22	1	3.00	3	0	0	3	0
.......................................................................................................................................................................GCACTGGGTAAAGTTTGTCCTC......................................................................................................	22	1	3.00	3	0	0	3	0
.....................................................................................................................................................................CAGCACTGGGTAAAGTTTGTCCT.......................................................................................................	23	1	3.00	3	0	0	3	0
......................................................................................................................................................................AGCACTGGGTAAAGTTTGTCC........................................................................................................	21	1	3.00	3	0	0	3	0
.........................................................................................................................................................................ACTGGGTAAAGTTTGTCCT.......................................................................................................	19	1	3.00	3	0	0	3	0
........................................................................................................................................................................CACTGGGTAAAGTTTGTCCT.......................................................................................................	20	1	3.00	3	0	0	3	0
.......................................................................................................................................................................GCACTGGGTAAAGTTTGTCCG.......................................................................................................	21	1	3.00	3	1	0	2	0
...........................................................................................................CGACAAACCTTGTTCGGTTTTGT.................................................................................................................................................................	23	1	2.00	2	0	0	2	0
.......................................................................................................................................................................GCACTGGGTAAAGTTTGTCA........................................................................................................	20	1	2.00	2	0	0	2	0
...........................................................................................................CGACAAACCTTGTTCGGTT.....................................................................................................................................................................	19	1	2.00	2	0	0	2	0
...........................................................................................................................................................................TGGGTAAAGTTTGTCCTA......................................................................................................	18	1	2.00	2	0	0	2	0
.......................................................................................................................................................................GCACTGGGTAAAGTTTGTCCA.......................................................................................................	21	1	2.00	2	0	0	2	0
.....................................................................................................................................................................CAGCACTGGGTAAAGTTTGTCC........................................................................................................	22	1	1.00	1	0	0	1	0
...........................................................................................................CGACAAACCTTGTTCGGTTTTGC.................................................................................................................................................................	23	1	1.00	1	0	0	1	0
...........................................................................................................CGACAAACCTTGTTCGGT......................................................................................................................................................................	18	1	1.00	1	0	0	1	0
....................................................................................................................................................................CCAGCACTGGGTAAAGTTTGT..........................................................................................................	21	1	1.00	1	0	0	1	0
............................................................................................................GACAAACCTTGTTCGGTTTTG..................................................................................................................................................................	21	1	1.00	1	0	0	1	0
........................................................................................................................................................................CACTGGGTAAAGTTTGTCCTAA.....................................................................................................	22	1	1.00	1	0	0	1	0
.......................................................................................................................................................................GCACTGGGTAAAGTTTGTCTA.......................................................................................................	21	2	1.00	2	0	0	2	0
......................................................................................................................................................................AGCACTGGGTAAAGTTTGTCCTC......................................................................................................	23	1	1.00	1	0	0	1	0
.........................................................................................................................................................................ACTGGGTAAAGTTTGTCC........................................................................................................	18	1	1.00	1	0	0	1	0
..........................................................................................................................................................................CTGGGTAAAGTTTGTCCTA......................................................................................................	19	1	1.00	1	0	0	1	0
........................................................................................................................................................................CACTGGGTAAAGTTTGTCC........................................................................................................	19	1	1.00	1	0	0	1	0
......................................................................................................................................................................AGCACTGGGTAAAGTTTGT..........................................................................................................	19	1	1.00	1	0	0	1	0
.......................................................................................................................................................................GCACTGGGTAAAGTTTGT..........................................................................................................	18	1	1.00	1	0	0	1	0

droYak3

GTGATGATCCAGCAGTGAAAACA-AAA----GTATCAAAGC------------AA--------------AGTTTG-----------------GAACAG-CAATTATACGACAAACCTTGTTCTGTTTTGCCA---------------A-TTTCCTA------G-CCAGCACTGGGTAAAGTTTGTCCTATAATCCCGAAAC--GACGACCA-GCAGC------C--------AAG-------------------TGTGAACCA-T-CAAA----G----------------	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
.......................................................................................................................................................................GCACTGGGTAAAGTTTGTCCTA......................................................................................................	22	1	1191.00	1191	0	3	769	418	0	1	0	0	0	0	0
.......................................................................................................................................................................GCACTGGGTAAAGTTTGTCCT.......................................................................................................	21	1	1020.00	1020	0	2	836	180	0	2	0	0	0	0	0
.......................................................................................................................................................................GCACTGGGTAAAGTTTGTCCC.......................................................................................................	21	1	228.00	228	0	0	227	1	0	0	0	0	0	0	0
.......................................................................................................................................................................GCACTGGGTAAAGTTTGTCC........................................................................................................	20	1	94.00	94	0	0	87	7	0	0	0	0	0	0	0
...........................................................................................................CGACAAACCTTGTTCTGTTTTG..................................................................................................................................................................	22	1	28.00	28	0	0	28	0	0	0	0	0	0	0	0
.......................................................................................................................................................................GCACTGGGTAAAGTTTGTCCTAA.....................................................................................................	23	1	8.00	8	0	0	3	5	0	0	0	0	0	0	0
........................................................................................................................................................................CACTGGGTAAAGTTTGTCCTA......................................................................................................	21	1	6.00	6	0	2	4	0	0	0	0	0	0	0	0
...........................................................................................................CGACAAACCTTGTTCTGTTTTGCC................................................................................................................................................................	24	1	6.00	6	0	0	6	0	0	0	0	0	0	0	0
...........................................................................................................CGACAAACCTTGTTCTGTTTT...................................................................................................................................................................	21	1	5.00	5	0	0	4	1	0	0	0	0	0	0	0
.......................................................................................................................................................................GCACTGGGTAAAGTTTGTC.........................................................................................................	19	1	5.00	5	0	0	2	3	0	0	0	0	0	0	0
.......................................................................................................................................................................GCACTGGGTAAAGTTTGTCCTC......................................................................................................	22	1	4.00	4	0	0	3	1	0	0	0	0	0	0	0
......................................................................................................................................................................AGCACTGGGTAAAGTTTGTCCT.......................................................................................................	22	1	4.00	4	0	0	3	1	0	0	0	0	0	0	0
.......................................................................................................TATACGACAAACCTTGTTCTGT......................................................................................................................................................................	22	1	3.00	3	0	0	3	0	0	0	0	0	0	0	0
.........................................................................................................................................................................ACTGGGTAAAGTTTGTCCTA......................................................................................................	20	1	3.00	3	0	0	2	1	0	0	0	0	0	0	0
........................................................................................................ATACGACAAACCTTGTTCTGTT.....................................................................................................................................................................	22	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0
.........................................................................................................................................................................ACTGGGTAAAGTTTGTCCT.......................................................................................................	19	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0
...........................................................................................................CGACAAACCTTGTTCTGTTT....................................................................................................................................................................	20	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0
..........................................................................................................ACGACAAACCTTGTTCTGTTTTGCC................................................................................................................................................................	25	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0
...........................................................................................................CGACAAACCTTGTTCTGT......................................................................................................................................................................	18	1	2.00	2	0	0	1	1	0	0	0	0	0	0	0
........................................................................................................................................................................CACTGGGTAAAGTTTGTCCT.......................................................................................................	20	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0
.........................................................................................................................................................................ACTGGGTAAAGTTTGTCCC.......................................................................................................	19	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0
.......................................................................................................................................................................GCACTGGGTAAAGTTTGTCCTT......................................................................................................	22	1	2.00	2	0	0	1	1	0	0	0	0	0	0	0
........................................................................................................ATACGACAAACCTTGTTCTGTC.....................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.........................................................................................................TACGACAAACCTTGTTCTGTTTT...................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................GCACTGGGTAAAGTTTGTCCG.......................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................GCACTGGGTAAAGTTTGTCCTAC.....................................................................................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................GTAAAGTTTGTCCTATAATCC................................................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................GCACTGGGTAAAGTTTGTCCTCC.....................................................................................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................GCACTGGGTAAAGTTTGTCCTAT.....................................................................................................	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.............................................................................................................................................................................................TAATCCCGAAAC--GACGACCA-GCAGC------....................................................................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................GCACTGGGTAAAGTTTGTCCTG......................................................................................................	22	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0
.........................................................................................................TACGACAAACCTTGTTCTGTTTTGC.................................................................................................................................................................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................TA------G-CCAGCACTGGGTAAAGTTTGTCCTA......................................................................................................	28	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.......................................................................................................TATACGACAAACCTTGTTCTGC......................................................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
...........................................................................................................CGACAAACCTTGTTCTGTTTTGT.................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................CAGCACTGGGTAAAGTTTGTCCC.......................................................................................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................................CTGGGTAAAGTTTGTCCTA......................................................................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
...........................................................................................................CGACAAACCTTGTTCTGTTTTGC.................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................CACTGGGTAAAGTTTGTCCC.......................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................TGGGTAAAGTTTGTCCTA......................................................................................................	18	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
...........................................................................................................CGACAAACCTTGTTCTGC......................................................................................................................................................................	18	3	0.33	1	0	0	1	0	0	0	0	0	0	0	0

droEre2

GTGAGGATCCCGCAGTGAAAAGT-AAA----GT-----------------A--------------TACGAGTTTG-----------------GAACAG-CAATTATACGACAAACCTTGTTCGGTTTTGCCA---------------A-TTTCCTA------G-CCAGCACTGGGTAAAGTTTGTCCTATAATCCCGAAAC--GACGACCA-GCC---A--------------AT-------------------TGTGAACCC-A-C----------------------CA	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
.......................................................................................................................................................................GCACTGGGTAAAGTTTGTCCTA......................................................................................................	22	1	612.00	612	141	85	0	384	1	1	0
.......................................................................................................................................................................GCACTGGGTAAAGTTTGTCCT.......................................................................................................	21	1	280.00	280	21	71	0	187	1	0	0
.......................................................................................................................................................................GCACTGGGTAAAGTTTGTCC........................................................................................................	20	1	19.00	19	5	8	0	6	0	0	0
...........................................................................................................CGACAAACCTTGTTCGGTTTTG..................................................................................................................................................................	22	1	14.00	14	5	2	0	7	0	0	0
.......................................................................................................................................................................GCACTGGGTAAAGTTTGTCCC.......................................................................................................	21	1	14.00	14	0	14	0	0	0	0	0
........................................................................................................................................................................CACTGGGTAAAGTTTGTCCTA......................................................................................................	21	1	6.00	6	6	0	0	0	0	0	0
.......................................................................................................................................................................GCACTGGGTAAAGTTTGTCCTC......................................................................................................	22	1	5.00	5	0	1	0	4	0	0	0
.......................................................................................................................................................................GCACTGGGTAAAGTTTGTC.........................................................................................................	19	1	5.00	5	0	1	0	4	0	0	0
.......................................................................................................................................................................GCACTGGGTAAAGTTTGTCCTAA.....................................................................................................	23	1	4.00	4	3	0	0	1	0	0	0
........................................................................................................................................................................CACTGGGTAAAGTTTGTCCT.......................................................................................................	20	1	4.00	4	4	0	0	0	0	0	0
...........................................................................................................CGACAAACCTTGTTCGGTTTT...................................................................................................................................................................	21	1	4.00	4	1	1	0	1	0	1	0
.......................................................................................................................................................................GCACTGGGTAAAGTTTGTCCTT......................................................................................................	22	1	3.00	3	1	0	0	2	0	0	0
.......................................................................................................................................................................GCACTGGGTAAAGTTTGTCCTAC.....................................................................................................	23	1	2.00	2	1	1	0	0	0	0	0
.......................................................................................................................................................................GCACTGGGTAAAGTTTGTCCTAG.....................................................................................................	23	1	2.00	2	1	0	0	1	0	0	0
.......................................................................................................................................................................GCACTGGGTAAAGTTTGTCCA.......................................................................................................	21	1	2.00	2	0	1	0	1	0	0	0
.......................................................................................................................................................................GCACTGGGTAAAGTTTGTCCTAT.....................................................................................................	23	1	2.00	2	0	0	0	2	0	0	0
..........................................................................................................................................................................CTGGGTAAAGTTTGTCCT.......................................................................................................	18	1	1.00	1	0	1	0	0	0	0	0
.......................................................................................................................................................................GCACTGGGTAAAGTTTGT..........................................................................................................	18	1	1.00	1	1	0	0	0	0	0	0
.......................................................................................................................................................................GCACTGGGTAAAGTTTGTCCTATT....................................................................................................	24	1	1.00	1	0	0	0	1	0	0	0
...........................................................................................................CGACAAACCTTGTTCGGTTTTGT.................................................................................................................................................................	23	1	1.00	1	0	0	0	1	0	0	0
.........................................................................................................TACGACAAACCTTGTTCGGTTT....................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0
.........................................................................................................TACGACAAACCTTGTTCGGTTTTG..................................................................................................................................................................	24	1	1.00	1	0	0	0	1	0	0	0
...........................................................................................................CGACAAACCTTGTTCGGTTTTT..................................................................................................................................................................	22	1	1.00	1	0	0	0	1	0	0	0
...........................................................................................................CGACAAACCTTGTTCGGTTT....................................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0	0
...............................................................................................................................................................................TAAAGTTTGTCCTATAATCCCG..............................................................................................	22	1	1.00	1	0	0	0	1	0	0	0
.......................................................................................................................................................................GCACTGGGTAAAGTTTGTCCTG......................................................................................................	22	1	1.00	1	1	0	0	0	0	0	0

dgr-mir-309-2

scaffold_5621:2525-2600 +

Known

Unknown

intergenic

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads