dgr-mir-3-1

GCTAAAAGATGTATATAAAAATACTTGCCAAATTTTCATAGCTCTGCTTTTGGGATGCATTCTGTACAGTAATGTTGACTCTTGTAAAACCATCACTGGGCAAAGTGTGTCTCAAAATTGTGGCAAGTAAAGAAAAGAATATAAAATGGTGAATTTTGCAGTGTTT *********************************.....(((.(((((((((((((((((.(((.((((.(((((.((....))..)).))).)))).))).))))))))))))).....)))))))...*********************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M041 female body	V109 male body
............................................................................................TCACTGGGCAAAGTGTGTCTCA....................................................	22	0	2	1.50	3	2	1
.............................................................................................CACTGGGCAAAGTGTGTCTCT....................................................	21	1	2	0.50	1	1	0
............................................................................................TCCCTGGGCAAAGTGTGTCTCA....................................................	22	1	2	0.50	1	0	1
.............................................................CTTTACAGTAATGTTGGGT......................................................................................	19	3	20	0.10	2	0	2
...................................................................................GAAACACAATCACTGGGCAA...............................................................	20	3	15	0.07	1	1	0

Species	Coordinate	ID	Type	Alignment
droGri2	scaffold_15112:2108964-2109129 -	dgr-mir-3-1	Known_mirbase	GCT---AAA-A----------G-A-----TGTA---TATAAAAA--TACTTG-------------CCAAAT-TTT----CA-TAGCTCTGCTTTTGGGATGCATTCTGTACAGTAATGTTGACT----------CTTGTAAAACCATCACTGGGCAAAGTGTGTCTCAAAATTGTGGCAAGTAAAGAAAAGAATAT-AAA----------------------------ATGGTGAATTTTG--------CAGTGTTT
droVir3	scaffold_12875:4111896-4112073 +	dvi-mir-3	Known_mirbase	GCA---AAAAAAAATAAAAATAAAACAATATTATTAAATAAAAA------TA-------------CCAGAA-TCT----CA-TAGCTCTGCTTTTGGGATGCATTTTGTGCGGTTATGTCTGCC---------TCC--AAAACCCATCACTGGGCAAAGTGTGTCTCAAAATTGTGGCTACCAGAGAAAATAA-CGCAG-CTCA-------------------GATA-----------TTC--------CAGTGTTT
droMoj3	scaffold_6496:20936947-20937106 -	dmo-mir-3	Known_mirbase	GCA---AGGAA----------A-A-----AGTC---CAG--TCAATT--CAA-------------CGGAAC-TCT----CG-CAGCTCTACTTTTGGGATGCATTTTGTGCAGATGTCTAACGA---------TTG--GAAACCCATCACTGGGCAAAGTGTGTCTCAAAATTGGGGCAACTAGCACAAAGGA-GG-AG-TGTT-------------------TCAG-----------TTC--------CAGTGTTT
droWil2	scf2_1100000004514:1651901-1652065 -	dwi-mir-3	Known_mirbase	ATC---AAA-A---------TACAATTGGAG-------------------TGTTAAAAAAAAAGGAGAGTA-ATCGAATTT-AGACCATGATTTTGGGATGCATTTTGTGCAGTTATGTCTTCATGTGATAATTCT------CTCATCACTGGGCAAAGTGTGTCTCATAATTTTGGTAACCATATCAAC-------------------------CCA------AAAA-----------GTTAG----------CCA
dp5	3:12677721-12677871 -	dps-mir-3	Known_mirbase	GCG---AG---------------------CGTC-------------------TCAGCGCACATTGTGAACG-ACGATACCG-AGGCAACGATCCTGGGATGCATTTTGTGCAGTTATGTCTACG--TGATCA--TC------CTCATCACTGGGCAAAGTGTGTCTCAGGATTGCAGCCCCGCCAACAAG-TGTAC-AAG---------------------------AATG------------G----------CGA
droPer2	scaffold_2:8905795-8905945 +	dpe-mir-3	Known_mirbase	GCG---AG---------------------CGTC-------------------TCAGCGCACATTGTGAACG-ACGATACCG-AGGCAACGATCCTGGGATGCATTTTGTGCAGTTATGTCTACG--TGATCA--TC------CTCATCACTGGGCAAAGTGTGTCTCAGGATTGCAGCCCCGCCAACAAG-TGTAC-AAG---------------------------AATG------------G----------CGA
droAna3	scaffold_13266:9731184-9731343 +	dan-mir-3	Known_mirbase	TAA---AAA-A----------G-C-----CGTC---CAG--ACA--T--CTG-------------TGAGCC-CCCA---AC-TGGCTACGATCTTGGGACGCATTTTGTGCAGTTATGCACCAAA---AATA-T-A------TCCATCACTGGGCAAAGTGTGTCTCAGGATCTTGGCCATCTCAACGAAG-AATC-AATTCATC-A-----------------AATT-----------GTAAGTG--------ATT
droBip1	scf7180000396427:874161-874324 +			TCG---AAA-A---------TGAA-----CGTC---CAG--AAA--T--CTG-------------TGAATC-CTCCGCTCC-GGGTCACGATCTTGGGATGCATTTTGTGCAGTTATGCATCAAA---ATCA--------TAACCATCACTGGGCAAAGTGTGTCTCATGATCTGGGCCAACTCAACAAAGAA-TCCAG-TCAT-------------------CAAAT-----------GTAAGTG--------GTT
droKik1	scf7180000302679:89525-89659 -			GCAA--TC-----------------------------------------CAG-------------TGAACC-AGC----AA-AGGTCCCGAACTTGGGATGCATTTTGTTCAGTCATGTCAACG--TGA----TAC------TCCATCACTGGGCAAAGTGTGTCTCAAGAACCTGACCACCACGACGGAGACTCC-AAC---------------------------A------------G--------CAGCACCA
droFic1	scf7180000454039:848156-848301 -			GTA---AA-----------------------------------------GTG-------------TTAACT-ACCA---AA-AGGTCCCGATCCTGGGATGCATCTTGTGCAGTTATGTTTA-----------TCT------CTCATCACTGGGCAAAGTGTGTCTCAAGATCCTGACCACATCATCGAAT-CTTC-AAACAAACCAA--TAAT-CCA---------------------ACAAGTGA------ACTT
droEle1	scf7180000491201:2014113-2014260 -			TCT-CGAA-----------------------------------------CAG-------------TGAATT-ATCG---AA-AGGCCCCGATCTTGGGATGCATCTTGTGCAGTTATGTTAA-----------CCT------CACATCACTGGGCAAAGTGTGTCTCAAGATCCTGGCCACATCATCGCT----TC-AACCATACAAAGCCAAT-A-------CAAAA-----------GTAAGTG--------ATA
droRho1	scf7180000780066:73495-73647 +			GCT---AA-----------------------------------------CTG-------------TGATCA-AAC----AA-AGGCCTCGATATTGGGACGCATCTTGTGCAGTTATGTTTACA---------TCT------CACATCACTGGGCAAAGTGTGTCTCAAGATCCTGGTCACATCATCGCTA-CTTC-AACCATATAAATACAAT-A-------CAAAA-----------GTAAGTGATA-----ATT
droBia1	scf7180000302143:3059957-3060085 -			GCA---AA-----------------------------------------GTG-------------TGAAGC-ACCC---GA-AGGTCCCGATCCTGGGACGCATCTTGTGCAGTTATGATTCTG---------TCT------CTCATCACTGGGCAAAGTGTGTCTCAAGATCCTGGCCACAGCATCGCAA-CGTA-AACTGA--------------------------------------------AA-----AAT
droTak1	scf7180000415384:83891-84037 +			GCT---TA-----------------------------------------TTG-------------TGAACC-AACC---AA-AGGTCTCGATCTTGGGATGCATCTTGTGCAGTTATGATTCTA---------TAT------CTCATCACTGGGCAAAGTGTGTCTCAAGAGTCTGGCCACAA----G-------C-AACCAAAGAAA--TAAT-C-------TCAAA-----------GTAAGTGATACCAGGCTC
droEug1	scf7180000409474:2396703-2396845 +			GCT---AA-----------------------------------------TAG-------------TGAATCTACCA---AAACGGTCCCGATCCTGGGATCCATCTTGTTCAGTTATGTATTTA---------ACT------CACATCACTGGGCAAAGTGTGTCTCAGGATCTTGACCAAATCATCAAGA-CTTT-AAACTG---------------------AAAA-----------GTAAGTGATA-----ATT
dm3	chr2R:15549049-15549194 -	dme-mir-3	Known_mirbase	GCT---AA-----------------------------------------TTG-------------TGAGCC-ACC----TA-AGGTCCCGATCCTGGGATGCATCTTGTGCAGTTATGTTTCAA---------TCT------CACATCACTGGGCAAAGTGTGTCTCAAGATCCTGGCCACATCGTCGCAA-CTTC-AAATCAAT-----TAAATCAAAAAATCAAGA-----------GT---------------A
droSim2	2r:16196311-16196464 -	dsi-mir-3	Known_mirbase	GCT---AA-----------------------------------------TTG-------------TGAACC-ACC----AA-AGGTCCCGATCCTGGGATGCATCTTGTGCAGTTATGTTCCAA---------TCT------CACATCACTGGGCAAAGTGTGTCTCAAGATCCTGGCCACATCGTCGCTA-CTTC-AAATCAAC-A-----AT-CCAAAAAGCAAGA-----------GTAAGTGATA-----TTG
droSec2	scaffold_1:13063763-13063921 -	dse-mir-3	Known_mirbase	GCT---AA-----------------------------------------TTG-------------TGAATC-ACC----AA-AGGTCCCGATCCTGGGATGCATCTTGTGCAGTTATGTTTCAA---------TCT------CACATCACTGGGCAAAGTGTGTCTCAAGATCCTGGCCACATCGTCGCAA-CTAC-AAATCAAC-A-----AT-CAAAAAATCAAGA-----------GTAAGTTATATTGGGCAC
droYak3	2R:13623592-13623738 +	dya-mir-3	Known_mirbase	GCAGCCAA-----------------------------------------GTG-------------TGAACC-ATC----AA-AGGTCCTGATCCTGGGATGCATCTTGTGCAGTCATGTTTCCA---------TCT------CACATCACTGGGCAAAGTGTGTCTCAAGATCTTGGCCACTTCGACGCAG-CTAC-AAATCAAC-AG--TAAT-------------------------GCAAAAGAGA-----AGA
droEre2	scaffold_4845:9749300-9749438 -	der-mir-3	Known_mirbase	GCC---AA-----------------------------------------TTG-------------TGAACC-CAC----CA-AGGTCCTGATCCTGGGATGCATCTTGTGCAGTTATGTTTCTA---------TCT------CACATCACTGGGCAAAGTGTGTCTCAAGATCCTGGCCACTTCGACGCAA-CTAC-AAATCAAC-A----------AC-----AAAT-----------GC------AG-----AGT

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droGri2

GCT---AAA-A----------G-A-----TGTA---TATAAAAA--TACTTG-------------CCAAAT-TTT----CA-TAGCTCTGCTTTTGGGATGCATTCTGTACAGTAATGTTGACT----------CTTGTAAAACCATCACTGGGCAAAGTGTGTCTCAAAATTGTGGCAAGTAAAGAAAAGAATAT-AAA----------------------------ATGGTGAATTTTG--------CAGTGTTT	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
..................................................................................................................................................TCACTGGGCAAAGTGTGTCTCA.........................................................................................	22	2	1.50	3	2	1
...................................................................................................................................................CACTGGGCAAAGTGTGTCTCT.........................................................................................	21	2	0.50	1	1	0

droVir3

GCA---AAAAAAAATAAAAATAAAACAATATTATTAAATAAAAA------TA-------------CCAGAA-TCT----CA-TAGCTCTGCTTTTGGGATGCATTTTGTGCGGTTATGTCTGCC---------TCC--AAAACCCATCACTGGGCAAAGTGTGTCTCAAAATTGTGGCTACCAGAGAAAATAA-CGCAG-CTCA-------------------GATA-----------TTC--------CAGTGTTT	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells	SRR2096013 Ovary_Strain_9_oxidized	SRR2096014 Ovary_Strain_160_oxidized	SRR2096026 embryo_0-2h from 14 day old Strain 9 mothers	SRR2096038 embryo_0-2h from 14 day old Strain 9 mothers	SRR2096050 embryo_0-2h from 14 day old Strain 160 mothers	SRR2096055 Ovary_Min_43	SRR2096056 Ovary_Min_46	SRR2096057 Ovary_Min_50	SRR2096058 Ovary_Min_98	SRR2096059 Ovary_Min_164	SRR2096060 Ovary_Min_193	SRR2096061 embryo_0-2h from 14 day old Strain 160 mothers	SRR2096072 embryo_0-2h from 15to16 day old dysgenic mothers	SRR2096079 embryo_0-2h from 15to16 day old dysgenic mothers	SRR2096080 embryo_0-2h from 15to16 day old nondysgenic mothers	SRR2096081 embryo_0-2h from 15to16 day old nondysgenic mothers
..................................................................................................................................................TCACTGGGCAAAGTGTGTCTCA.........................................................................................	22	1	19010.00	19010	3	3	15	1096	1	2	3	1	1	1	1	1	29	216	2	1	2	1	1	2	5	7	2	2	3	1	1	1	1	5	2	6	818	2	1564	2125	3875	2531	6	2	0	0	25	581	421	386	315	147	325	61	91	55	22	34	21	0	0	0	29	2832	71	20	0	0	4	61	68	343	0	0	0	1	0	0	318	147	174	45	72
..................................................................................................................................................TCACTGGGCAAAGTGTGTCTC..........................................................................................	21	1	1472.00	1472	2	5	3	410	0	0	0	0	0	1	0	0	1	3	3	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	19	0	52	87	78	35	1	0	0	0	0	38	28	55	47	41	60	17	17	10	4	4	3	0	0	0	4	76	3	0	0	0	1	8	5	72	0	0	0	0	0	2	66	56	104	20	28
................................................................................................GGATGCATTTTGTGCGGTTATG...........................................................................................................................................	22	1	1462.00	1462	0	0	0	31	0	0	0	0	0	0	0	0	1	11	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	112	0	165	203	381	528	0	0	0	0	1	10	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	7	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	1	1	0
..................................................................................................................................................TCACTGGGCAAAGTGTGTCTCAA........................................................................................	23	1	518.00	518	0	0	0	15	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	30	0	75	58	158	67	0	0	0	0	0	3	1	2	2	1	2	1	0	0	0	0	1	0	0	0	1	24	1	0	0	0	1	5	1	23	0	0	0	0	0	0	17	7	10	6	4
..................................................................................................................................................TCACTGGGCAAAGTGTGTCTCT.........................................................................................	22	1	409.00	409	0	0	0	38	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	1	1	9	10	9	9	0	0	0	0	1	16	5	12	7	4	16	3	3	1	4	1	2	0	0	0	5	7	1	1	0	0	0	11	11	65	0	0	1	0	0	0	54	28	38	20	12
..................................................................................................................................................TCACTGGGCAAAGTGTGTCT...........................................................................................	20	1	167.00	167	0	0	1	35	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	0	0	0	1	0	0	1	1	0	1	6	0	12	25	24	5	1	0	0	0	0	1	0	5	0	2	3	2	3	0	0	1	0	0	0	0	3	18	0	0	0	0	0	0	0	3	0	0	0	0	0	0	4	1	1	0	5
........................................................................TCT----CA-TAGCTCTGCTTTTG.................................................................................................................................................................	19	1	123.00	123	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	13	0	9	20	14	61	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................ACTGGGCAAAGTGTGTCTCA.........................................................................................	20	1	106.00	106	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	7	16	36	17	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	23	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
..................................................................................................................................................TCACTGGGCAAAGTGTGTCTCAT........................................................................................	23	1	70.00	70	0	0	0	12	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	4	7	14	5	0	0	0	0	0	2	3	1	1	1	2	0	2	0	1	1	1	0	0	0	1	3	0	0	0	0	0	0	0	2	0	0	0	0	0	0	1	1	2	1	0
..................................................................................................................................................TCACTGGGCAAAGTGTGTCTCC.........................................................................................	22	1	61.00	61	0	0	0	19	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	1	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	20	1	0	0	0	0	2	0	3	0	0	0	0	0	0	7	2	1	0	0
................................................................................................GGATGCATTTTGTGCGGTTAT............................................................................................................................................	21	1	58.00	58	0	0	0	2	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	6	7	9	31	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................TCACTGGGCAAAGTGTGTCTCAAA.......................................................................................	24	1	49.00	49	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	4	0	6	7	11	5	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	1	1	1	2	0	0	0	0	0	0	1	0	0	1	0
......................................................................A-TCT----CA-TAGCTCTGCTTTTG.................................................................................................................................................................	20	1	45.00	45	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	3	13	2	19	0	0	0	0	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................TCACTGGGCAAAGTGTGTCTCAAAA......................................................................................	25	1	20.00	20	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	2	7	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................TCACTGGGCAAAGTGTGTCC...........................................................................................	20	1	18.00	18	0	0	0	18	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................TCACTGGGCAAAGTGTGTCTCTT........................................................................................	23	1	15.00	15	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	2	0	2	3	0	2	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1
...................................................................................................................................................CACTGGGCAAAGTGTGTCTCA.........................................................................................	21	1	15.00	15	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	2	1	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................TCACTGGGCAAAGTGTGTCTCATT.......................................................................................	24	1	14.00	14	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	2	1	1	2	0	0	1	1	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
..................................................................................................................................................TCACTGGGCAAAGTGTGTCTCG.........................................................................................	22	1	14.00	14	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1
..................................................................................................................................................TCACTGGGCAAAGTGTGTC............................................................................................	19	1	13.00	13	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	1	1	0	0	0	0	0	0	0	1	0	0	2	1	1	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................CT----CA-TAGCTCTGCTTTTG.................................................................................................................................................................	18	1	13.00	13	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	2	1	1	5	0	0	0	0	2	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................TCACTGGGCAAAGTGTGTCTCAAAAA.....................................................................................	26	1	11.00	11	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	3	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	1	0	1	0	0
....................................................................................................................................................ACTGGGCAAAGTGTGTCTCAA........................................................................................	21	1	9.00	9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	1	3	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................TCACTGGGCAAAGTGTGTCTCAC........................................................................................	23	1	6.00	6	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0
..................................................................................................................................................TCACTGGGCAAAGTGTGTCTCAAT.......................................................................................	24	1	6.00	6	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	2	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................ATCACTGGGCAAAGTGTGTCTCA.........................................................................................	23	1	6.00	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................AAATTGTGGCTACCAGAGAA.....................................................................	20	1	6.00	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	1	1
..................................................................................................................................................TCACTGGGCAAAGTGTGTCTCAAAAAA....................................................................................	27	1	5.00	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................AAATTGTGGCTACCAGAGA......................................................................	19	1	5.00	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	1	1	0	1
.....................................................................AA-TCT----CA-TAGCTCTGCTTTTG.................................................................................................................................................................	21	1	5.00	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................ACTGGGCAAAGTGTGTCTC..........................................................................................	19	1	5.00	5	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................TCACTGGGCAAAGTGTGTCTCACT.......................................................................................	24	1	5.00	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	3	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................ACTGGGCAAAGTGTGTCTCAT........................................................................................	21	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	2	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................TCACTGGGCAAAGTGTGTCTA..........................................................................................	21	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................TCACTGGGCAAAGTGTGTCTCATC.......................................................................................	24	1	4.00	4	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................TCACTGGGCAAAGTGTGTCTCAG........................................................................................	23	1	4.00	4	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................AAATTGTGGCTACCAGAG.......................................................................	18	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	2	0	0	0	0
.....................................................................................................................................................CTGGGCAAAGTGTGTCTCA.........................................................................................	19	1	4.00	4	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................GGATGCATTTTGTGCGGTTATC...........................................................................................................................................	22	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................AAATTGTGGCTACCAGAGAAAATAA-A..............................................................	26	1	3.00	3	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0
..................................................................................................................................................TCACTGGGCAAAGTGTGTCTCAAC.......................................................................................	24	1	3.00	3	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................TCACTGGGCAAAGTGTGTCTCATCT......................................................................................	25	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................TCACTGGGCAAAGTGTGTCTCCT........................................................................................	23	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
..................................................................................................................................................TCACTGGGCAAAGTGTGTCTCAAAC......................................................................................	25	1	3.00	3	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................GGATGCATTTTGTGCGGTTA.............................................................................................................................................	20	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................GGATGCATTTTGTGCGGTTATGT..........................................................................................................................................	23	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................ACTGGGCAAAGTGTGTCTCATT.......................................................................................	22	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................CT----CA-TAGCTCTGCTTT...................................................................................................................................................................	16	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................GGATGCATTTTGTGCGGTTATT...........................................................................................................................................	22	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................GGATGCATTTTGTGCGGTTATGA..........................................................................................................................................	23	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................TCACTGGGCAAAGTGTGTCTCACC.......................................................................................	24	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
....................................................................................................................................................ACTGGGCAAAGTGTGTCT...........................................................................................	18	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................TCTGCC---------TCC--AAAACC.................................................................................................................	15	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................AAATTGTGGCTACCAGAGAAAATAA-C..............................................................	26	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0
...................................................................................................................................................CACTGGGCAAAGTGTGTCTC..........................................................................................	20	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................CCAGAA-TCT----CA-TAGCTCTGCTTTTG.................................................................................................................................................................	25	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................TCACTGGGCAAAGTG................................................................................................	15	3	1.33	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................CATTTTGTGCGGTTATG...........................................................................................................................................	17	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................TTTGTGCGGTTATGTCTG.......................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................TCACTGGGCAAAGTGTGTCTAC.........................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................GGATGCATTTTGTGCGGTTATGC..........................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................GGGATGCATTTTGTGCGGTTATG...........................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................TCACTGGGCAAAGTGTGTCTCAGC.......................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................ACTGGGCAAAGTGTGTCTCAAA.......................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

GCA---AGGAA----------A-A-----AGTC---CAG--TCAATT--CAA-------------CGGAAC-TCT----CG-CAGCTCTACTTTTGGGATGCATTTTGTGCAGATGTCTAACGA---------TTG--GAAACCCATCACTGGGCAAAGTGTGTCTCAAAATTGGGGCAACTAGCACAAAGGA-GG-AG-TGTT-------------------TCAG-----------TTC--------CAGTGTTT	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
..................................................................................................................................................TCACTGGGCAAAGTGTGTCTCA.........................................................................................	22	1	9703.00	9703	11	3828	44	52	5724	44
..................................................................................................................................................TCACTGGGCAAAGTGTGTCTC..........................................................................................	21	1	4606.00	4606	2	296	2	3	4302	1
..................................................................................................................................................TCACTGGGCAAAGTGTGTCT...........................................................................................	20	1	1411.00	1411	5	89	1	3	1312	1
..................................................................................................................................................TCACTGGGCAAAGTGTGTCC...........................................................................................	20	1	415.00	415	0	0	0	0	415	0
..................................................................................................................................................TCACTGGGCAAAGTGTGTCTCT.........................................................................................	22	1	293.00	293	2	26	0	1	264	0
..................................................................................................................................................TCACTGGGCAAAGTGTGTCTCC.........................................................................................	22	1	214.00	214	0	30	0	0	184	0
..................................................................................................................................................TCACTGGGCAAAGTGTGTCTCAT........................................................................................	23	1	114.00	114	0	7	1	0	106	0
..................................................................................................................................................TCACTGGGCAAAGTGTGTCTCAA........................................................................................	23	1	78.00	78	0	26	0	0	51	1
....................................................................................................................................................ACTGGGCAAAGTGTGTCTCA.........................................................................................	20	1	45.00	45	0	37	0	0	7	1
..................................................................................................................................................TCACTGGGCAAAGTGTGTC............................................................................................	19	1	42.00	42	0	2	0	1	39	0
................................................................................................................................................CATCACTGGGCAAAGTGTGTCT...........................................................................................	22	1	33.00	33	0	5	0	0	28	0
....................................................................................................................TCTAACGA---------TTG--GAAACCCA...............................................................................................................	19	1	31.00	31	0	1	0	0	30	0
..................................................................................................................................................TCACTGGGCAAAGTGTGTCTCATC.......................................................................................	24	1	30.00	30	0	2	0	0	28	0
..................................................................................................................................................TCACTGGGCAAAGTGTGTCTCAC........................................................................................	23	1	25.00	25	0	1	0	0	24	0
..................................................................................................................................................TCACTGGGCAAAGTGTGTCTCATT.......................................................................................	24	1	22.00	22	1	6	0	0	15	0
...................................................................................................................................................CACTGGGCAAAGTGTGTCTCA.........................................................................................	21	1	19.00	19	3	4	0	0	11	1
..................................................................................................................................................TCACTGGGCAAAGTGTGTCTCTC........................................................................................	23	1	19.00	19	0	2	0	0	17	0
..................................................................................................................................................TCACTGGGCAAAGTGTGTCTCG.........................................................................................	22	1	18.00	18	0	13	0	0	5	0
..................................................................................................................................................TCACTGGGCAAAGTGTGTCTCTT........................................................................................	23	1	17.00	17	1	0	0	0	16	0
........................................................................TCT----CG-CAGCTCTACTTTTG.................................................................................................................................................................	19	1	13.00	13	0	7	0	0	6	0
................................................................................................................................................CATCACTGGGCAAAGTGTGTCC...........................................................................................	22	1	13.00	13	0	0	0	0	13	0
......................................................................C-TCT----CG-CAGCTCTACTTTTG.................................................................................................................................................................	20	1	11.00	11	0	5	0	0	6	0
........................................................................................................................................................................AAATTGGGGCAACTAGCAC......................................................................	19	1	11.00	11	0	1	0	0	10	0
..................................................................................................................................................TCACTGGGCAAAGTGTGTCTCAG........................................................................................	23	1	9.00	9	0	2	0	0	7	0
..................................................................................................................................................TCACTGGGCAAAGTGTGTCTCAAA.......................................................................................	24	1	8.00	8	0	2	0	0	6	0
.....................................................................................................................................................CTGGGCAAAGTGTGTCTCA.........................................................................................	19	1	6.00	6	0	1	0	0	5	0
.....................................................................AC-TCT----CG-CAGCTCTACTTTTG.................................................................................................................................................................	21	1	5.00	5	0	0	0	0	5	0
...................................................................................................................................................CACTGGGCAAAGTGTGTCT...........................................................................................	19	1	5.00	5	0	0	0	0	5	0
..................................................................................................................................................TCACTGGGCAAAGTGTGTCTG..........................................................................................	21	1	5.00	5	0	1	0	0	4	0
....................................................................................................................................................ACTGGGCAAAGTGTGTCTC..........................................................................................	19	1	5.00	5	0	3	0	0	2	0
..................................................................................................................................................TCACTGGGCAAAGTGTGTCTT..........................................................................................	21	1	5.00	5	0	0	0	0	5	0
...................................................................................................................................................CACTGGGCAAAGTGTGTCTC..........................................................................................	20	1	4.00	4	0	0	0	0	4	0
..................................................................................................................................................TCACTGGGCAAAGTGTGTCTCATTT......................................................................................	25	1	4.00	4	0	0	0	0	4	0
..................................................................................................................................................TCACTGGGCAAAGTGTGTCTCAAG.......................................................................................	24	1	3.00	3	0	0	0	0	3	0
..................................................................................................................................................TCACTGGGCAAAGTGTGTCTCTTC.......................................................................................	24	1	3.00	3	0	0	0	0	3	0
.....................................................................................................................................................CTGGGCAAAGTGTGTCTC..........................................................................................	18	1	3.00	3	0	0	0	0	3	0
....................................................................................................................................................ACTGGGCAAAGTGTGTCT...........................................................................................	18	1	3.00	3	0	0	0	0	3	0
..................................................................................................................................................TCACTGGGCAAAGTGTGT.............................................................................................	18	1	3.00	3	0	1	0	0	2	0
..................................................................................................................................................TCACTGGGCAAAGTGTGTCTCTCC.......................................................................................	24	1	2.00	2	0	0	0	0	2	0
....................................................................................................................................................ACTGGGCAAAGTGTGTCTCC.........................................................................................	20	1	2.00	2	0	1	0	0	1	0
.........................................................................CT----CG-CAGCTCTACTTTTG.................................................................................................................................................................	18	1	2.00	2	0	1	0	0	1	0
......................................................................................................................................................TGGGCAAAGTGTGTCTCA.........................................................................................	18	1	2.00	2	0	1	0	0	1	0
........................................................................................................................................................................AAATTGGGGCAACTAGCACAA....................................................................	21	1	2.00	2	0	0	0	0	2	0
........................................................................................................................................................................AAATTGGGGCAACTAGCACA.....................................................................	20	1	2.00	2	0	0	0	0	2	0
..................................................................................................................................................TCACTGGGCAAAGTGTGTCTCTCT.......................................................................................	24	1	2.00	2	0	0	0	0	2	0
..................................................................................................................................................TCACTGGGCAAAGTGTGTCTCCT........................................................................................	23	1	1.00	1	0	1	0	0	0	0
..................................................................................................................................................TCACTGGGCAAAGTGTGTCTCCC........................................................................................	23	1	1.00	1	0	0	0	0	1	0
........................................................................................................................................................................AAATTGGGGCAACTAGCACT.....................................................................	20	1	1.00	1	0	0	0	0	1	0
..................................................................................................................................................TCACTGGGCAAAGTGTGTCTCAAC.......................................................................................	24	1	1.00	1	0	0	0	0	1	0
....................................................................................................................................................ACTGGGCAAAGTGTGTCTCT.........................................................................................	20	1	1.00	1	0	0	0	0	1	0

droWil2

ATC---AAA-A---------TACAATTGGAG-------------------TGTTAAAAAAAAAGGAGAGTA-ATCGAATTT-AGACCATGATTTTGGGATGCATTTTGTGCAGTTATGTCTTCATGTGATAATTCT------CTCATCACTGGGCAAAGTGTGTCTCATAATTTTGGTAACCATATCAAC-------------------------CCA------AAAA-----------GTTAG----------CCA	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
..................................................................................................................................................TCACTGGGCAAAGTGTGTCTCA.........................................................................................	22	1	42754.00	42754	0	92	6	42474	182
..................................................................................................................................................TCACTGGGCAAAGTGTGTCTC..........................................................................................	21	1	559.00	559	2	11	1	544	1
....................................................................................................................................................ACTGGGCAAAGTGTGTCTCA.........................................................................................	20	1	368.00	368	0	2	0	365	1
..................................................................................................................................................TCACTGGGCAAAGTGTGTCT...........................................................................................	20	1	286.00	286	0	6	2	277	1
..................................................................................................................................................TCACTGGGCAAAGTGTGTCTCAA........................................................................................	23	1	278.00	278	0	3	0	274	1
...................................................................................................................................................CACTGGGCAAAGTGTGTCTCA.........................................................................................	21	1	51.00	51	0	11	0	40	0
..................................................................................................................................................TCACTGGGCAAAGTGTGTCTCAT........................................................................................	23	1	43.00	43	0	1	0	42	0
....................................................................................................................................................ACTGGGCAAAGTGTGTCTCATA.......................................................................................	22	1	40.00	40	0	0	0	40	0
..................................................................................................................................................TCACTGGGCAAAGTGTGTCTCT.........................................................................................	22	1	39.00	39	0	0	0	39	0
................................................................................................GGATGCATTTTGTGCAGTTATG...........................................................................................................................................	22	1	36.00	36	0	0	0	36	0
..................................................................................................................................................TCACTGGGCAAAGTGTGTCTCG.........................................................................................	22	1	29.00	29	0	1	0	28	0
............................................................................AATTT-AGACCATGATTTTG.................................................................................................................................................................	19	1	19.00	19	0	1	0	18	0
..................................................................................................................................................TCACTGGGCAAAGTGTGTCTCC.........................................................................................	22	1	18.00	18	0	0	0	18	0
..................................................................................................................................................TCACTGGGCAAAGTGTGTCTCAC........................................................................................	23	1	13.00	13	0	0	0	13	0
..............................................................................................TGGGATGCATTTTGTGCAGTTA.............................................................................................................................................	22	1	11.00	11	0	0	0	11	0
.............................................................................ATTT-AGACCATGATTTTG.................................................................................................................................................................	18	1	10.00	10	0	0	0	10	0
..................................................................................................................................................TCACTGGGCAAAGTGTGTCTCATT.......................................................................................	24	1	9.00	9	0	1	0	8	0
..............................................................................................TGGGATGCATTTTGTGCAGTT..............................................................................................................................................	21	1	8.00	8	0	0	0	8	0
....................................................................................................................................................ACTGGGCAAAGTGTGTCTC..........................................................................................	19	1	7.00	7	0	0	0	7	0
...............................................................................................................................................TCATCACTGGGCAAAGTGTGTC............................................................................................	22	1	6.00	6	0	0	0	6	0
..................................................................................................................................................TCACTGGGCAAAGTGTGTCTCATA.......................................................................................	24	1	6.00	6	0	0	0	6	0
......................................................................................................................TCTTCATGTGATAATTCT------CTCA...............................................................................................................	22	1	6.00	6	0	0	0	6	0
......................................................................................................................................................TGGGCAAAGTGTGTCTCA.........................................................................................	18	1	5.00	5	0	1	0	4	0
..................................................................................................................................................TCACTGGGCAAAGTGTGTC............................................................................................	19	1	5.00	5	0	0	0	5	0
.....................................................................................................................................................CTGGGCAAAGTGTGTCTCA.........................................................................................	19	1	4.00	4	0	0	0	4	0
....................................................................................................................................................ACTGGGCAAAGTGTGTCTCAT........................................................................................	21	1	4.00	4	0	0	0	4	0
...................................................................................................................................................CACTGGGCAAAGTGTGTCTC..........................................................................................	20	1	4.00	4	0	4	0	0	0
....................................................................................................................................................ACTGGGCAAAGTGTGTCTCAA........................................................................................	21	1	4.00	4	0	0	0	4	0
..................................................................................................................................................TCACTGGGCAAAGTGTGTCTCAG........................................................................................	23	1	3.00	3	0	0	0	3	0
..................................................................................................................................................TCACTGGGCAAAGTGTGT.............................................................................................	18	1	3.00	3	0	0	0	3	0
...................................................................................................................................................CACTGGGCAAAGTGTGTCT...........................................................................................	19	1	2.00	2	0	2	0	0	0
..................................................................................................................................................TCACTGGGCAAAGTGTGTCTA..........................................................................................	21	1	2.00	2	0	0	0	2	0
................................................................................................................................................CATCACTGGGCAAAGTGTGTCT...........................................................................................	22	1	2.00	2	0	0	0	2	0
....................................................................................................................................................ACTGGGCAAAGTGTGTCTCATT.......................................................................................	22	1	2.00	2	0	0	0	2	0
........................................................................................................................................................................TAATTTTGGTAACCATATC......................................................................	19	1	2.00	2	0	0	0	2	0
..................................................................................................................................................TCACTGGGCAAAGTGTGTCCA..........................................................................................	21	1	2.00	2	0	0	0	2	0
..................................................................................................................................................TCACTGGGCAAAGTGTGTCTAG.........................................................................................	22	1	1.00	1	0	0	0	1	0
.................................................................................................................................................ATCACTGGGCAAAGTGTGTCTCA.........................................................................................	23	1	1.00	1	0	0	0	1	0
...............................................................................................................................................TCATCACTGGGCAAAGTGTGT.............................................................................................	21	1	1.00	1	0	0	0	1	0
..................................................................................................................................................TCACTGGGCAAAGTGTGTCTCAAT.......................................................................................	24	1	1.00	1	0	0	0	1	0
..................................................................................................................................................TCACTGGGCAAAGTGTGTCTCAACC......................................................................................	25	1	1.00	1	0	0	0	1	0
................................................................................................GGATGCATTTTGTGCAGTTAT............................................................................................................................................	21	1	1.00	1	0	0	0	1	0
..................................................................................................................................................TCACTGGGCAAAGTGTGTA............................................................................................	19	1	1.00	1	0	0	0	1	0
...............................................................................TT-AGACCATGATTTTGGGA..............................................................................................................................................................	19	1	1.00	1	0	0	0	1	0
..................................................................................................ATGCATTTTGTGCAGTTATGT..........................................................................................................................................	21	1	1.00	1	0	0	0	1	0
..................................................................................................................................................TCACTGGGCAAAGTGTGTCTCATATA.....................................................................................	26	1	1.00	1	0	0	0	1	0
..............................................................................................TGGGATGCATTTTGTGCAGTTT.............................................................................................................................................	22	1	1.00	1	0	0	0	1	0
..................................................................................................................................................TCACTGGGCAAAGTGTGTTCA..........................................................................................	21	4	0.25	1	0	0	0	1	0

dp5

GCG---AG---------------------CGTC-------------------TCAGCGCACATTGTGAACG-ACGATACCG-AGGCAACGATCCTGGGATGCATTTTGTGCAGTTATGTCTACG--TGATCA--TC------CTCATCACTGGGCAAAGTGTGTCTCAGGATTGCAGCCCCGCCAACAAG-TGTAC-AAG---------------------------AATG------------G----------CGA	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
..................................................................................................................................................TCACTGGGCAAAGTGTGTCTCA.........................................................................................	22	1	14794.00	14794	0	724	2804	0	11228	2	35	0	1	0
..................................................................................................................................................TCACTGGGCAAAGTGTGTCTC..........................................................................................	21	1	1277.00	1277	1	111	840	3	320	0	2	0	0	0
..................................................................................................................................................TCACTGGGCAAAGTGTGTCT...........................................................................................	20	1	222.00	222	0	15	124	0	81	0	2	0	0	0
..................................................................................................................................................TCACTGGGCAAAGTGTGTCTCC.........................................................................................	22	1	113.00	113	0	5	48	0	59	0	1	0	0	0
...................................................................................................................................................CACTGGGCAAAGTGTGTCTCA.........................................................................................	21	1	99.00	99	0	79	2	0	18	0	0	0	0	0
....................................................................................................................................................ACTGGGCAAAGTGTGTCTCA.........................................................................................	20	1	92.00	92	0	5	3	0	84	0	0	0	0	0
..................................................................................................................................................TCACTGGGCAAAGTGTGTCTCT.........................................................................................	22	1	85.00	85	0	0	29	0	54	0	2	0	0	0
..................................................................................................................................................TCACTGGGCAAAGTGTGTCTCAT........................................................................................	23	1	54.00	54	0	13	29	0	12	0	0	0	0	0
..................................................................................................................................................TCACTGGGCAAAGTGTGTCTCAA........................................................................................	23	1	45.00	45	0	5	22	0	18	0	0	0	0	0
..................................................................................................................................................TCACTGGGCAAAGTGTGTCC...........................................................................................	20	1	43.00	43	0	0	42	0	1	0	0	0	0	0
..................................................................................................................................................TCACTGGGCAAAGTGTGTCTCG.........................................................................................	22	1	31.00	31	0	0	1	0	30	0	0	0	0	0
..................................................................................................................................................TCACTGGGCAAAGTGTGTCTCAC........................................................................................	23	1	26.00	26	0	2	16	0	8	0	0	0	0	0
................................................................................................GGATGCATTTTGTGCAGTTATG...........................................................................................................................................	22	1	25.00	25	0	1	4	0	20	0	0	0	0	0
..................................................................................................................................................TCACTGGGCAAAGTGTGTCTCAG........................................................................................	23	1	22.00	22	0	2	15	0	5	0	0	0	0	0
....................................................................................................................................................ACTGGGCAAAGTGTGTCTCAGG.......................................................................................	22	1	15.00	15	0	0	0	0	15	0	0	0	0	0
...................................................................................................................................................CACTGGGCAAAGTGTGTCTC..........................................................................................	20	1	13.00	13	0	11	2	0	0	0	0	0	0	0
..................................................................................................................................................TCACTGGGCAAAGTGTGTCTCATT.......................................................................................	24	1	12.00	12	0	0	9	0	2	0	1	0	0	0
..................................................................................................................................................TCACTGGGCAAAGTGTGTC............................................................................................	19	1	11.00	11	0	1	4	0	2	1	2	0	1	0
.....................................................................................................................................................CTGGGCAAAGTGTGTCTCA.........................................................................................	19	1	6.00	6	0	2	0	0	4	0	0	0	0	0
....................................................................................................................................................ACTGGGCAAAGTGTGTCTC..........................................................................................	19	1	5.00	5	0	1	0	0	4	0	0	0	0	0
............................................................................TACCG-AGGCAACGATCCTG.................................................................................................................................................................	19	1	5.00	5	0	0	1	0	4	0	0	0	0	0
..............................................................................................TGGGATGCATTTTGTGCAGTTA.............................................................................................................................................	22	1	4.00	4	0	0	1	0	3	0	0	0	0	0
..................................................................................................................................................TCACTGGGCAAAGTGTGTCTCAAA.......................................................................................	24	1	4.00	4	0	0	2	0	2	0	0	0	0	0
...............................................................................................GGGATGCATTTTGTGCAGTTATG...........................................................................................................................................	23	1	4.00	4	0	0	1	0	3	0	0	0	0	0
.....................................................................................................................................................CTGGGCAAAGTGTGTCTCAGGA......................................................................................	22	1	3.00	3	0	0	0	0	3	0	0	0	0	0
....................................................................................................................................................ACTGGGCAAAGTGTGTCT...........................................................................................	18	1	3.00	3	0	0	1	0	2	0	0	0	0	0
...................................................................................................................................................CACTGGGCAAAGTGTGTCTCC.........................................................................................	21	1	3.00	3	0	1	2	0	0	0	0	0	0	0
..................................................................................................................................................TCACTGGGCAAAGTGTGTCTT..........................................................................................	21	1	3.00	3	0	0	2	0	1	0	0	0	0	0
.............................................................................................CTGGGATGCATTTTGTGCAGTT..............................................................................................................................................	22	1	3.00	3	0	0	3	0	0	0	0	0	0	0
..................................................................................................................................................TCACTGGGCAAAGTGTGTCTCACA.......................................................................................	24	1	2.00	2	0	0	0	0	2	0	0	0	0	0
..................................................................................................................................................TCACTGGGCAAAGTGTGTCTTC.........................................................................................	22	1	2.00	2	0	0	0	0	2	0	0	0	0	0
..................................................................................................................................................TCACTGGGCAAAGTGTGTCTG..........................................................................................	21	1	2.00	2	0	0	1	0	1	0	0	0	0	0
..................................................................................................................................................TCACTGGGCAAAGTGTGTCTCTC........................................................................................	23	1	2.00	2	0	0	1	0	1	0	0	0	0	0
..............................................................................................TGGGATGCATTTTGTGCAGTT..............................................................................................................................................	21	1	2.00	2	0	0	0	0	2	0	0	0	0	0
..................................................................................................................................................TCACTGGGCAAAGTGTGTCTCCA........................................................................................	23	1	2.00	2	0	0	0	0	2	0	0	0	0	0
..................................................................................................................................................TCACTGGGCAAAGTGTGTCG...........................................................................................	20	1	2.00	2	0	0	0	0	0	0	1	0	1	0
....................................................................................................................................................ACTGGGCAAAGTGTGTCTCAGGT......................................................................................	23	1	2.00	2	0	0	0	0	2	0	0	0	0	0
..........................................................................GATACCG-AGGCAACGATCCTG.................................................................................................................................................................	21	1	1.00	1	0	0	0	0	1	0	0	0	0	0
.............................................................................ACCG-AGGCAACGATCCTG.................................................................................................................................................................	18	1	1.00	1	0	0	0	0	1	0	0	0	0	0
......................................................................................................................................................TGGGCAAAGTGTGTCTCA.........................................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................TCACTGGGCAAAGTGTGTCTCATC.......................................................................................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0
.................................................................................................................................................ATCACTGGGCAAAGTGTGTCTCA.........................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0

droPer2

GCG---AG---------------------CGTC-------------------TCAGCGCACATTGTGAACG-ACGATACCG-AGGCAACGATCCTGGGATGCATTTTGTGCAGTTATGTCTACG--TGATCA--TC------CTCATCACTGGGCAAAGTGTGTCTCAGGATTGCAGCCCCGCCAACAAG-TGTAC-AAG---------------------------AATG------------G----------CGA	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
..................................................................................................................................................TCACTGGGCAAAGTGTGTCTCA.........................................................................................	22	1	1931.00	1931	67	27	1707	1	85	44
..................................................................................................................................................TCACTGGGCAAAGTGTGTCTC..........................................................................................	21	1	281.00	281	198	8	66	0	4	5
..................................................................................................................................................TCACTGGGCAAAGTGTGTCT...........................................................................................	20	1	45.00	45	1	1	28	1	0	14
....................................................................................................................................................ACTGGGCAAAGTGTGTCTCA.........................................................................................	20	1	15.00	15	0	0	15	0	0	0
..................................................................................................................................................TCACTGGGCAAAGTGTGTCTCC.........................................................................................	22	1	12.00	12	0	0	12	0	0	0
...................................................................................................................................................CACTGGGCAAAGTGTGTCTCA.........................................................................................	21	1	7.00	7	0	6	1	0	0	0
..................................................................................................................................................TCACTGGGCAAAGTGTGTCTCT.........................................................................................	22	1	6.00	6	1	0	3	0	1	1
..................................................................................................................................................TCACTGGGCAAAGTGTGTCTCAA........................................................................................	23	1	5.00	5	0	0	4	0	1	0
....................................................................................................................................................ACTGGGCAAAGTGTGTCTCAGG.......................................................................................	22	1	4.00	4	0	0	4	0	0	0
..................................................................................................................................................TCACTGGGCAAAGTGTGTCTCG.........................................................................................	22	1	4.00	4	1	0	3	0	0	0
..................................................................................................................................................TCACTGGGCAAAGTGTGTC............................................................................................	19	1	4.00	4	0	1	3	0	0	0
................................................................................................GGATGCATTTTGTGCAGTTATG...........................................................................................................................................	22	1	3.00	3	0	0	3	0	0	0
...................................................................................................................................................CACTGGGCAAAGTGTGTCTC..........................................................................................	20	1	2.00	2	0	2	0	0	0	0
..................................................................................................................................................TCACTGGGCAAAGTGTGTCTCAT........................................................................................	23	1	2.00	2	0	1	1	0	0	0
..................................................................................................................................................TCACTGGGCAAAGTGTGTCTAT.........................................................................................	22	1	1.00	1	0	0	1	0	0	0
..................................................................................................................................................TCACTGGGCAAAGTGTGTCTCAAA.......................................................................................	24	1	1.00	1	0	0	0	0	1	0
..................................................................................................................................................TCACTGGGCAAAGTGTGTCC...........................................................................................	20	1	1.00	1	0	0	0	0	0	1
..................................................................................................................................................TCACTGGGCAAAGTGTGTCTCTTT.......................................................................................	24	1	1.00	1	0	0	0	0	0	1
.....................................................................................................................................................CTGGGCAAAGTGTGTCTCAGG.......................................................................................	21	1	1.00	1	0	0	1	0	0	0
..................................................................................................................................................TCACTGGGCAAAGTGTGT.............................................................................................	18	1	1.00	1	0	0	1	0	0	0
..................................................................................................................................................TCACTGGGCAAAGTGTGTCTCAG........................................................................................	23	1	1.00	1	0	0	1	0	0	0
....................................................................................................................................................ACTGGGCAAAGTGTGTCTCAG........................................................................................	21	1	1.00	1	0	0	1	0	0	0
..................................................................................................................................................TCACTGGGCAAAGTGTGTCTCAGA.......................................................................................	24	1	1.00	1	0	0	1	0	0	0
....................................................................................................................................................ACTGGGCAAAGTGTGTCTC..........................................................................................	19	1	1.00	1	0	0	1	0	0	0
.........................................................................................................TTGTGCAGTTATGTCTACG--TGATCA--TC------C..................................................................................................................	28	1	1.00	1	0	0	1	0	0	0

droAna3

TAA---AAA-A----------G-C-----CGTC---CAG--ACA--T--CTG-------------TGAGCC-CCCA---AC-TGGCTACGATCTTGGGACGCATTTTGTGCAGTTATGCACCAAA---AATA-T-A------TCCATCACTGGGCAAAGTGTGTCTCAGGATCTTGGCCATCTCAACGAAG-AATC-AATTCATC-A-----------------AATT-----------GTAAGTG--------ATT	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
..................................................................................................................................................TCACTGGGCAAAGTGTGTCTCA.........................................................................................	22	1	1247.00	1247	197	249	603	69	65	64
..................................................................................................................................................TCACTGGGCAAAGTGTGTCTC..........................................................................................	21	1	153.00	153	23	107	19	1	2	1
..................................................................................................................................................TCACTGGGCAAAGTGTGTCT...........................................................................................	20	1	47.00	47	10	29	3	2	2	1
...................................................................................................................................................CACTGGGCAAAGTGTGTCTCA.........................................................................................	21	1	22.00	22	18	1	2	0	0	1
..................................................................................................................................................TCACTGGGCAAAGTGTGTCTCC.........................................................................................	22	1	11.00	11	0	1	9	1	0	0
..................................................................................................................................................TCACTGGGCAAAGTGTGTCTCAT........................................................................................	23	1	10.00	10	4	2	1	1	1	1
..................................................................................................................................................TCACTGGGCAAAGTGTGTCTCT.........................................................................................	22	1	9.00	9	1	5	2	1	0	0
................................................................................................GGACGCATTTTGTGCAGTTATG...........................................................................................................................................	22	1	7.00	7	0	4	3	0	0	0
..................................................................................................................................................TCACTGGGCAAAGTGTGTCTCAA........................................................................................	23	1	7.00	7	2	3	1	1	0	0
..................................................................................................................................................TCACTGGGCAAAGTGTGTC............................................................................................	19	1	7.00	7	0	7	0	0	0	0
..................................................................................................................................................TCACTGGGCAAAGTGTGTCTCATT.......................................................................................	24	1	5.00	5	4	1	0	0	0	0
..............................................................................................TGGGACGCATTTTGTGCAGTTA.............................................................................................................................................	22	1	3.00	3	0	0	3	0	0	0
....................................................................................................................................................ACTGGGCAAAGTGTGTCTCA.........................................................................................	20	1	3.00	3	0	0	3	0	0	0
...................................................................................................................................................CACTGGGCAAAGTGTGTCTCATT.......................................................................................	23	1	3.00	3	3	0	0	0	0	0
..................................................................................................................................................TCACTGGGCAAAGTGTGTCC...........................................................................................	20	1	3.00	3	0	3	0	0	0	0
..................................................................................................................................................TCACTGGGCAAAGTGTGTCTCATC.......................................................................................	24	1	2.00	2	0	2	0	0	0	0
..............................................................................................TGGGACGCATTTTGTGCAGTT..............................................................................................................................................	21	1	2.00	2	0	0	2	0	0	0
...................................................................................................................................................CACTGGGCAAAGTGTGTCTC..........................................................................................	20	1	2.00	2	1	1	0	0	0	0
..................................................................................................................................................TCACTGGGCAAAGTGTGTCTT..........................................................................................	21	1	2.00	2	1	0	0	0	1	0
..................................................................................................................................................TCACTGGGCAAAGTGTGTCTCG.........................................................................................	22	1	2.00	2	0	0	2	0	0	0
..................................................................................................................................................TCACTGGGCAAAGTGTGTCTCAG........................................................................................	23	1	2.00	2	0	2	0	0	0	0
..................................................................................................................................................TCACTGGGCAAAGTGTGTCTCAC........................................................................................	23	1	2.00	2	1	0	1	0	0	0
....................................................................................................................................................ACTGGGCAAAGTGTGTCTC..........................................................................................	19	1	2.00	2	0	0	2	0	0	0
..................................................................................................................................................TCACTGGGCAAAGTGTGTCTAC.........................................................................................	22	1	1.00	1	0	0	1	0	0	0
.........................................................................CCA---AC-TGGCTACGATCTTG.................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0	0
...................................................................................................................................................CACTGGGCAAAGTGTGTCT...........................................................................................	19	1	1.00	1	1	0	0	0	0	0
..................................................................................................................................................TCACTGGGCAAAGTGTGTCTCTTT.......................................................................................	24	1	1.00	1	1	0	0	0	0	0
................................................................................................................................................CATCACTGGGCAAAGTGTGTCT...........................................................................................	22	1	1.00	1	0	1	0	0	0	0
.............................................................................................TTGGGACGCATTTTGTGCAGTT..............................................................................................................................................	22	1	1.00	1	0	0	0	0	0	1
..................................................................................................................................................TCACTGGGCAAAGTGTGT.............................................................................................	18	1	1.00	1	0	0	0	1	0	0
..................................................................................................................................................TCACTGGGCAAAGTGTGTCTCATTC......................................................................................	25	1	1.00	1	0	1	0	0	0	0
..................................................................................................................................................TCACTGGGCAAAGTGTGTCTCATA.......................................................................................	24	1	1.00	1	0	0	0	1	0	0
................................................................................................................................................CATCACTGGGCAAAGTGTGTCC...........................................................................................	22	1	1.00	1	0	1	0	0	0	0
........................................................................CCCA---AC-TGGCTACGATCTTG.................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0
..................................................................................................................................................TCACTGGGCAAAGTGTGTCA...........................................................................................	20	1	1.00	1	0	1	0	0	0	0

droBip1

TCG---AAA-A---------TGAA-----CGTC---CAG--AAA--T--CTG-------------TGAATC-CTCCGCTCC-GGGTCACGATCTTGGGATGCATTTTGTGCAGTTATGCATCAAA---ATCA--------TAACCATCACTGGGCAAAGTGTGTCTCATGATCTGGGCCAACTCAACAAAGAA-TCCAG-TCAT-------------------CAAAT-----------GTAAGTG--------GTT	Size	Hit Count	Total Norm	Total
No Reads

droKik1

GCAA--TC-----------------------------------------CAG-------------TGAACC-AGC----AA-AGGTCCCGAACTTGGGATGCATTTTGTTCAGTCATGTCAACG--TGA----TAC------TCCATCACTGGGCAAAGTGTGTCTCAAGAACCTGACCACCACGACGGAGACTCC-AAC---------------------------A------------G--------CAGCACCA	Size	Hit Count	Total Norm	Total
No Reads

droFic1

GTA---AA-----------------------------------------GTG-------------TTAACT-ACCA---AA-AGGTCCCGATCCTGGGATGCATCTTGTGCAGTTATGTTTA-----------TCT------CTCATCACTGGGCAAAGTGTGTCTCAAGATCCTGACCACATCATCGAAT-CTTC-AAACAAACCAA--TAAT-CCA---------------------ACAAGTGA------ACTT	Size	Hit Count	Total Norm	Total
No Reads

droEle1

TCT-CGAA-----------------------------------------CAG-------------TGAATT-ATCG---AA-AGGCCCCGATCTTGGGATGCATCTTGTGCAGTTATGTTAA-----------CCT------CACATCACTGGGCAAAGTGTGTCTCAAGATCCTGGCCACATCATCGCT----TC-AACCATACAAAGCCAAT-A-------CAAAA-----------GTAAGTG--------ATA	Size	Hit Count	Total Norm	Total
No Reads

droRho1

GCT---AA-----------------------------------------CTG-------------TGATCA-AAC----AA-AGGCCTCGATATTGGGACGCATCTTGTGCAGTTATGTTTACA---------TCT------CACATCACTGGGCAAAGTGTGTCTCAAGATCCTGGTCACATCATCGCTA-CTTC-AACCATATAAATACAAT-A-------CAAAA-----------GTAAGTGATA-----ATT	Size	Hit Count	Total Norm	Total
No Reads

droBia1

GCA---AA-----------------------------------------GTG-------------TGAAGC-ACCC---GA-AGGTCCCGATCCTGGGACGCATCTTGTGCAGTTATGATTCTG---------TCT------CTCATCACTGGGCAAAGTGTGTCTCAAGATCCTGGCCACAGCATCGCAA-CGTA-AACTGA--------------------------------------------AA-----AAT	Size	Hit Count	Total Norm	Total
No Reads

droTak1

GCT---TA-----------------------------------------TTG-------------TGAACC-AACC---AA-AGGTCTCGATCTTGGGATGCATCTTGTGCAGTTATGATTCTA---------TAT------CTCATCACTGGGCAAAGTGTGTCTCAAGAGTCTGGCCACAA----G-------C-AACCAAAGAAA--TAAT-C-------TCAAA-----------GTAAGTGATACCAGGCTC	Size	Hit Count	Total Norm	Total
No Reads

droEug1

GCT---AA-----------------------------------------TAG-------------TGAATCTACCA---AAACGGTCCCGATCCTGGGATCCATCTTGTTCAGTTATGTATTTA---------ACT------CACATCACTGGGCAAAGTGTGTCTCAGGATCTTGACCAAATCATCAAGA-CTTT-AAACTG---------------------AAAA-----------GTAAGTGATA-----ATT	Size	Hit Count	Total Norm	Total
No Reads

dm3

GCT---AA-----------------------------------------TTG-------------TGAGCC-ACC----TA-AGGTCCCGATCCTGGGATGCATCTTGTGCAGTTATGTTTCAA---------TCT------CACATCACTGGGCAAAGTGTGTCTCAAGATCCTGGCCACATCGTCGCAA-CTTC-AAATCAAT-----TAAATCAAAAAATCAAGA-----------GT---------------A	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
..................................................................................................................................................TCACTGGGCAAAGTGTGTCTCA.........................................................................................	22	1	1109209.00	1109209	0	0	0	0	6	0	431	1804	374	22	1	1	0	0	0	0	0	0	0	0	3	3	28	3	0	20	13	0	4	1	12	5	1	0	559	34	82	8	20	7	7	7	51	3	87	19	17	6	4	12	69	5	20	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	1	0	2	24867	8858	6066	5786	9457	10	5	1	13	4	78	2	1	24	8	8	8	7	22	19	434	0	29	28	32	1350	2133	33	1	1	4607	101	59	2955	2	11	11	0	3	0	1	8	26	0	7	0	18	11	0	0	0	0	3	1	4	4	0	0	88122	137463	126036	61767	5369	405	42	18	29	100	119	46	51	83	21	0	0	0	0	0	12	18	0	31	6	7	51	62	0	19	1	0	12	5	1	12	5	8	1	13	0	16	3	9	52	2	47	14	15	26	159	2	1	0	12	9	56	107	0	0	0	0	0	112	7	36	1	22	1	0	0	14	37	11	65	45	12	46	10	95	10	33	9	1356	6	557	13	2	0	12	0	0	0	0	16584	18049	11	7	9	2	5	1	14	5	13	1	100	3	5	3	11	10	221	6	5	7	10	3	16	5	8	20	13	7	90	17	6	9	21	63	27	95	35	102	54	159	7	31	18	13	24	99	34	46	52	561144	1527	15	62	216	11	22	54	65	137	49	21	25	50	18	134	74	125	89	103	127	392	139	133	41	89	429	134	88	52	75	355	117	179	84	12497	93	62	23	49	29	74	0
..................................................................................................................................................TCACTGGGCAAAGTGTGTCT...........................................................................................	20	1	52059.00	52059	0	0	0	0	0	0	0	19	29	3	0	0	0	1	0	0	0	0	0	0	0	0	2	2	0	0	0	0	1	0	0	0	0	0	46644	0	2	0	3	0	0	0	13	0	51	0	0	0	0	2	5	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	187	65	466	349	43	3	1	0	0	0	1	0	0	2	2	2	2	1	1	0	0	0	8	4	7	8	6	0	0	0	182	9	0	78	0	3	0	0	0	0	1	0	1	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	418	416	481	142	11	167	0	0	0	3	3	0	0	0	0	0	0	0	0	0	3	0	5	1	6	0	4	9	0	2	0	0	4	0	0	1	1	1	0	5	0	0	0	4	1	0	3	7	0	1	0	0	0	0	9	0	1	0	0	0	0	0	0	3	0	0	0	8	0	0	0	4	8	0	0	4	1	8	0	14	1	0	0	30	0	17	2	0	0	0	0	0	0	0	185	229	0	1	1	2	1	2	1	1	4	0	0	0	1	0	0	3	2	1	0	0	1	0	4	0	0	5	4	2	9	1	1	1	1	1	0	0	0	1	1	2	2	4	4	4	2	4	3	4	4	1273	107	0	0	16	0	0	2	0	1	2	2	0	5	0	5	0	5	2	4	5	4	0	16	2	6	12	3	0	1	3	26	3	4	0	13	0	2	0	3	0	11	0
..................................................................................................................................................TCACTGGGCAAAGTGTGTCTC..........................................................................................	21	1	28441.00	28441	0	0	0	0	0	0	8	102	42	0	0	0	0	0	0	0	0	1	0	0	0	1	5	3	0	0	1	0	0	0	0	0	0	0	72	1	10	0	3	0	0	1	8	0	23	0	1	0	0	1	5	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1027	455	786	1071	199	0	1	0	2	0	6	0	0	5	1	3	3	2	0	5	11	0	5	5	6	34	33	5	0	0	483	8	2	158	0	7	0	0	0	0	2	1	0	0	3	0	1	3	0	0	0	0	0	0	1	1	0	0	1919	2535	2789	855	75	67	0	1	0	3	11	2	1	1	0	0	0	0	0	0	3	5	0	1	8	0	6	7	0	4	0	0	3	0	0	0	0	2	0	0	0	0	0	0	2	0	1	1	0	0	1	0	0	0	1	0	3	2	0	0	0	0	0	10	0	0	0	2	0	0	0	1	3	0	8	6	4	8	3	88	3	12	4	829	2	289	1	0	2	5	0	0	0	0	640	739	0	0	1	0	0	0	0	0	1	0	2	1	1	2	3	4	1	0	1	0	1	0	0	1	2	6	2	1	7	1	0	0	3	5	1	6	4	1	2	6	0	0	4	2	3	7	2	2	4	12260	147	0	3	28	0	3	3	2	3	1	1	3	1	2	6	4	8	1	3	3	12	5	13	3	3	16	2	5	2	4	23	6	2	1	163	1	1	3	7	0	4	0
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....................................................................................................................................................ACTGGGCAAAGTGTGTCT...........................................................................................	18	1	61.00	61	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	9	5	0	0	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	2	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	25	2	0	0	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................ACTGGGCAAAGTGTGTCTCT.........................................................................................	20	1	60.00	60	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	26	7	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	17	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................TCACTGGGCAAAGTGTGTCTCAAT.......................................................................................	24	1	52.00	52	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	9	0	3	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	3	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	1	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	11	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................TCACTGGGCAAAGTGTGTCTCAG........................................................................................	23	1	52.00	52	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	10	9	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	18	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................TGCATCTTGTGCAGTTATGTTT........................................................................................................................................	22	1	47.00	47	0	0	0	0	0	0	0	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	10	1	12	3	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	7	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................TCACTGGGCAAAGTGTGTCTT..........................................................................................	21	1	47.00	47	0	0	0	0	0	0	1	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	3	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	4	4	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	14	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................AGATCCTGGCCACATCGTCGCA...................................................................	22	1	44.00	44	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	3	0	2	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	3	5	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	23	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................AGATCCTGGCCACATCGTCG.....................................................................	20	1	40.00	40	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	8	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	8	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droSim2

GCT---AA-----------------------------------------TTG-------------TGAACC-ACC----AA-AGGTCCCGATCCTGGGATGCATCTTGTGCAGTTATGTTCCAA---------TCT------CACATCACTGGGCAAAGTGTGTCTCAAGATCCTGGCCACATCGTCGCTA-CTTC-AAATCAAC-A-----AT-CCAAAAAGCAAGA-----------GTAAGTGATA-----TTG	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
..................................................................................................................................................TCACTGGGCAAAGTGTGTCTCA.........................................................................................	22	1	34191.00	34191	6	0	507	21	0	6	121	58	14421	11284	25	7742	0	0	0	0	0
..................................................................................................................................................TCACTGGGCAAAGTGTGTCTC..........................................................................................	21	1	2151.00	2151	23	9	1567	3	0	0	1	1	157	214	2	173	0	1	0	0	0
..................................................................................................................................................TCACTGGGCAAAGTGTGTCTCAA........................................................................................	23	1	527.00	527	0	0	1	0	0	1	6	1	238	265	0	15	0	0	0	0	0
..................................................................................................................................................TCACTGGGCAAAGTGTGTCT...........................................................................................	20	1	215.00	215	0	0	6	0	1	0	0	3	70	108	2	25	0	0	0	0	0
....................................................................................................................................................ACTGGGCAAAGTGTGTCTCA.........................................................................................	20	1	77.00	77	0	0	1	0	0	0	0	0	16	14	0	46	0	0	0	0	0
..................................................................................................................................................TCACTGGGCAAAGTGTGTCTCC.........................................................................................	22	1	41.00	41	0	0	0	0	0	0	0	0	3	2	0	36	0	0	0	0	0
..................................................................................................................................................TCACTGGGCAAAGTGTGTCTCG.........................................................................................	22	1	40.00	40	1	0	16	0	0	0	0	0	2	3	0	18	0	0	0	0	0
..................................................................................................................................................TCACTGGGCAAAGTGTGTCTCT.........................................................................................	22	1	31.00	31	0	0	1	0	0	0	0	0	2	1	0	27	0	0	0	0	0
........................................................................ACC----AA-AGGTCCCGATCCTG.................................................................................................................................................................	19	1	29.00	29	0	0	16	0	0	0	0	0	0	0	0	13	0	0	0	0	0
...................................................................................................................................................CACTGGGCAAAGTGTGTCTCA.........................................................................................	21	1	20.00	20	0	0	1	1	0	0	0	0	6	5	0	7	0	0	0	0	0
...................................................................................................................................................CACTGGGCAAAGTGTGTCTCAA........................................................................................	22	1	15.00	15	0	0	0	0	0	0	0	0	5	9	0	1	0	0	0	0	0
..................................................................................................................................................TCACTGGGCAAAGTGTGTC............................................................................................	19	1	14.00	14	0	0	0	0	1	0	0	0	7	6	0	0	0	0	0	0	0
..................................................................................................................................................TCACTGGGCAAAGTGTGTCTCAAA.......................................................................................	24	1	14.00	14	0	0	0	0	0	0	0	0	10	4	0	0	0	0	0	0	0
......................................................................C-ACC----AA-AGGTCCCGATCCTG.................................................................................................................................................................	20	1	13.00	13	0	0	9	0	0	0	0	0	0	0	0	4	0	0	0	0	0
..................................................................................................................................................TCACTGGGCAAAGTGTGTCTCAT........................................................................................	23	1	10.00	10	0	0	2	0	0	0	0	0	5	2	0	0	0	1	0	0	0
................................................................................................GGATGCATCTTGTGCAGTTATG...........................................................................................................................................	22	1	9.00	9	0	0	0	0	0	0	0	0	1	0	0	8	0	0	0	0	0
....................................................................................................................................................ACTGGGCAAAGTGTGTCTCAAA.......................................................................................	22	1	9.00	9	0	0	0	0	0	0	0	0	3	6	0	0	0	0	0	0	0
.....................................................................................................................................................CTGGGCAAAGTGTGTCTCA.........................................................................................	19	1	8.00	8	0	0	2	0	0	0	0	0	1	3	0	2	0	0	0	0	0
..................................................................................................................................................TCACTGGGCAAAGTGTG..............................................................................................	17	1	7.00	7	0	0	0	0	0	0	0	0	1	4	2	0	0	0	0	0	0
.........................................................................CC----AA-AGGTCCCGATCCTG.................................................................................................................................................................	18	1	5.00	5	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................ACTGGGCAAAGTGTGTCTCAA........................................................................................	21	1	5.00	5	0	0	0	0	0	0	0	0	4	1	0	0	0	0	0	0	0
..................................................................................................................................................TCACTGGGCAAAGTGTGTCTCAC........................................................................................	23	1	4.00	4	0	0	1	0	0	0	0	0	1	0	0	2	0	0	0	0	0
...................................................................................................................................................CACTGGGCAAAGTGTGTCTC..........................................................................................	20	1	4.00	4	0	1	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................AGATCCTGGCCACATCGTCGC....................................................................	21	1	3.00	3	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................TCACTGGGCAAAGTGTGTCTCATT.......................................................................................	24	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	1	0	2	0	0	0
......................................................................................................................................................TGGGCAAAGTGTGTCTCA.........................................................................................	18	1	3.00	3	0	0	0	0	0	0	0	0	2	0	1	0	0	0	0	0	0
.................................................................................................................................................ATCACTGGGCAAAGTGTGTCTCA.........................................................................................	23	1	3.00	3	0	0	0	0	0	0	0	0	2	1	0	0	0	0	0	0	0
..................................................................................................................................................TCACTGGGCAAAGTGTGTCTA..........................................................................................	21	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0
.....................................................................................................................................................CTGGGCAAAGTGTGTCTCAAGA......................................................................................	22	1	2.00	2	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0
...................................................................................................TGCATCTTGTGCAGTTATGTTC........................................................................................................................................	22	1	2.00	2	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0
...................................................................................................................................................CACTGGGCAAAGTGTGTCTCAAA.......................................................................................	23	1	2.00	2	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0
..................................................................................................................................................TCACTGGGCAAAGTGTGTCTCATTT......................................................................................	25	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0
.........................................................................................................................................................GCAAAGTGTGTCTCA.........................................................................................	15	2	1.50	3	0	0	0	0	0	0	0	0	2	1	0	0	0	0	0	0	0
........................................................................................................................................................................AGATCCTGGCCACATCGTCG.....................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................ACC-ACC----AA-AGGTCCCGATCCTG.................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
..................................................................................................................................................TCACTGGGCAAAGTGTGTCTCAAG.......................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................TCACTGGGCAAAGTGTGTCTTT.........................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
.................................................................................................................................................ATCACTGGGCAAAGTGTGTCTC..........................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................TGCATCTTGTGCAGTTATGTTT........................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
....................................................................................................................................................ACTGGGCAAAGTGTGTCT...........................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................AGATCCTGGCCACATCGTCGCT...................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................TCACTGGGCAAAGTGTGTCTTG.........................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0

droSec2

GCT---AA-----------------------------------------TTG-------------TGAATC-ACC----AA-AGGTCCCGATCCTGGGATGCATCTTGTGCAGTTATGTTTCAA---------TCT------CACATCACTGGGCAAAGTGTGTCTCAAGATCCTGGCCACATCGTCGCAA-CTAC-AAATCAAC-A-----AT-CAAAAAATCAAGA-----------GTAAGTTATATTGGGCAC	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
..................................................................................................................................................TCACTGGGCAAAGTGTGTCTCA.........................................................................................	22	1	26152.00	26152	357	48	23701	2046
..................................................................................................................................................TCACTGGGCAAAGTGTGTCTC..........................................................................................	21	1	1658.00	1658	29	4	1594	31
..................................................................................................................................................TCACTGGGCAAAGTGTGTCT...........................................................................................	20	1	434.00	434	5	0	419	10
....................................................................................................................................................ACTGGGCAAAGTGTGTCTCA.........................................................................................	20	1	188.00	188	2	0	173	13
..................................................................................................................................................TCACTGGGCAAAGTGTGTCTCAA........................................................................................	23	1	78.00	78	4	0	70	4
...................................................................................................................................................CACTGGGCAAAGTGTGTCTCA.........................................................................................	21	1	63.00	63	29	0	30	4
........................................................................ACC----AA-AGGTCCCGATCCTG.................................................................................................................................................................	19	1	49.00	49	5	0	44	0
..................................................................................................................................................TCACTGGGCAAAGTGTGTCTCAT........................................................................................	23	1	35.00	35	0	0	35	0
..................................................................................................................................................TCACTGGGCAAAGTGTGT.............................................................................................	18	1	31.00	31	0	0	30	1
................................................................................................GGATGCATCTTGTGCAGTTATG...........................................................................................................................................	22	1	29.00	29	0	0	29	0
..................................................................................................................................................TCACTGGGCAAAGTGTGTCTCG.........................................................................................	22	1	28.00	28	0	0	28	0
..................................................................................................................................................TCACTGGGCAAAGTGTGTC............................................................................................	19	1	24.00	24	0	1	22	1
..................................................................................................................................................TCACTGGGCAAAGTGTGTCTCC.........................................................................................	22	1	23.00	23	0	0	20	3
......................................................................C-ACC----AA-AGGTCCCGATCCTG.................................................................................................................................................................	20	1	18.00	18	2	0	14	2
..................................................................................................................................................TCACTGGGCAAAGTGTGTCTCT.........................................................................................	22	1	16.00	16	1	0	15	0
....................................................................................................................................................ACTGGGCAAAGTGTGTCTC..........................................................................................	19	1	15.00	15	0	0	15	0
.........................................................................CC----AA-AGGTCCCGATCCTG.................................................................................................................................................................	18	1	11.00	11	1	0	10	0
..................................................................................................................................................TCACTGGGCAAAGTGTGTCTCAC........................................................................................	23	1	10.00	10	0	0	9	1
.....................................................................................................................................................CTGGGCAAAGTGTGTCTCA.........................................................................................	19	1	6.00	6	0	0	6	0
......................................................................................................................................................TGGGCAAAGTGTGTCTCA.........................................................................................	18	1	6.00	6	0	0	6	0
..................................................................................................................................................TCACTGGGCAAAGTGTGTCTCAAA.......................................................................................	24	1	5.00	5	1	0	3	1
.................................................................................................................................................ATCACTGGGCAAAGTGTGTCTCA.........................................................................................	23	1	5.00	5	2	0	3	0
....................................................................................................................................................ACTGGGCAAAGTGTGTCTCAA........................................................................................	21	1	5.00	5	0	0	5	0
..................................................................................................................................................TCACTGGGCAAAGTGTGTCTCATT.......................................................................................	24	1	4.00	4	0	0	4	0
..................................................................................................................................................TCACTGGGCAAAGTGTGTCTT..........................................................................................	21	1	4.00	4	0	0	4	0
...................................................................................................................................................CACTGGGCAAAGTGTGTCTC..........................................................................................	20	1	4.00	4	4	0	0	0
........................................................................................................................................................................AGATCCTGGCCACATCGTCG.....................................................................	20	1	3.00	3	0	0	3	0
...............................................................................................GGGATGCATCTTGTGCAGTTATG...........................................................................................................................................	23	1	2.00	2	0	0	2	0
....................................................................................................................................................ACTGGGCAAAGTGTGTCT...........................................................................................	18	1	2.00	2	1	0	1	0
..................................................................................................................................................TCACTGGGCAAAGTGTGTCTCACA.......................................................................................	24	1	2.00	2	0	0	2	0
..................................................................................................................................................TCACTGGGCAAAGTGTGTCCA..........................................................................................	21	1	2.00	2	0	0	2	0
..................................................................................................................................................TCACTGGGCAAAGTGTGTCA...........................................................................................	20	1	2.00	2	0	0	2	0
..................................................................................................................................................TCACTGGGCAAAGTGTGTCTCAACC......................................................................................	25	1	2.00	2	0	0	2	0
.................................................................................................................................................ATCACTGGGCAAAGTGTGTCT...........................................................................................	21	1	2.00	2	0	0	2	0
....................................................................................................................................................ACTGGGCAAAGTGTGTCTCAAA.......................................................................................	22	1	2.00	2	0	0	2	0
.....................................................................TC-ACC----AA-AGGTCCCGATCCTG.................................................................................................................................................................	21	1	2.00	2	0	0	2	0
....................................................................................................................................................ACTGGGCAAAGTGTGTCTCAT........................................................................................	21	1	1.00	1	0	0	1	0
..................................................................................................................................................TCACTGGGCAAAGTGTGTCTCACT.......................................................................................	24	1	1.00	1	0	0	1	0
..................................................................................................................................................TCACTGGGCAAAGTGTGTCTAT.........................................................................................	22	1	1.00	1	0	0	1	0
...................................................................................................................................................CACTGGGCAAAGTGTGTCT...........................................................................................	19	1	1.00	1	0	0	1	0
...............................................................................................GGGATGCATCTTGTGCAGTTAT............................................................................................................................................	22	1	1.00	1	0	0	1	0
..................................................................................................................................................TCACTGGGCAAAGTGTGTCTCAAT.......................................................................................	24	1	1.00	1	0	0	1	0
....................................................................ATC-ACC----AA-AGGTCCCGATCCTG.................................................................................................................................................................	22	1	1.00	1	0	0	0	1
...................................................................AATC-ACC----AA-AGGTCCCGATCCTG.................................................................................................................................................................	23	1	1.00	1	0	0	1	0
....................................................................................................................................................ACTGGGCAAAGTGTGTCTCAAG.......................................................................................	22	1	1.00	1	0	0	1	0
..................................................................................................................................................TCACTGGGCAAAGTGTGTCTCTT........................................................................................	23	1	1.00	1	0	0	1	0
........................................................................................................................................................................AGATCCTGGCCACATCGT.......................................................................	18	1	1.00	1	0	0	1	0
...................................................................................................................................................CACTGGGCAAAGTGTGTCTCAT........................................................................................	22	1	1.00	1	0	0	1	0
...................................................................................................................................................CACTGGGCAAAGTGTGTCTCAA........................................................................................	22	1	1.00	1	0	0	1	0
..................................................................................................................................................TCACTGGGCAAAGTGTGTCTCAAAC......................................................................................	25	1	1.00	1	0	0	1	0
.................................................................................................................................................ATCACTGGGCAAAGTGTGTCTC..........................................................................................	22	1	1.00	1	0	0	1	0
..................................................................................................................................................TCACTGGGCAAAGTGTGTCTCATA.......................................................................................	24	1	1.00	1	0	0	1	0

droYak3

GCAGCCAA-----------------------------------------GTG-------------TGAACC-ATC----AA-AGGTCCTGATCCTGGGATGCATCTTGTGCAGTCATGTTTCCA---------TCT------CACATCACTGGGCAAAGTGTGTCTCAAGATCTTGGCCACTTCGACGCAG-CTAC-AAATCAAC-AG--TAAT-------------------------GCAAAAGAGA-----AGA	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
..................................................................................................................................................TCACTGGGCAAAGTGTGTCTCA.........................................................................................	22	1	19463.00	19463	0	33	9095	10250	23	47	15	0	0	0	0
..................................................................................................................................................TCACTGGGCAAAGTGTGTCTC..........................................................................................	21	1	3579.00	3579	5	8	3304	257	2	3	0	0	0	0	0
..................................................................................................................................................TCACTGGGCAAAGTGTGTCT...........................................................................................	20	1	410.00	410	0	0	378	30	2	0	0	0	0	0	0
..................................................................................................................................................TCACTGGGCAAAGTGTGTCC...........................................................................................	20	1	149.00	149	0	0	149	0	0	0	0	0	0	0	0
..................................................................................................................................................TCACTGGGCAAAGTGTGTCTCC.........................................................................................	22	1	126.00	126	0	0	75	48	0	3	0	0	0	0	0
..................................................................................................................................................TCACTGGGCAAAGTGTGTCTCAA........................................................................................	23	1	120.00	120	0	0	77	43	0	0	0	0	0	0	0
................................................................................................GGATGCATCTTGTGCAGTCATG...........................................................................................................................................	22	1	114.00	114	0	0	69	45	0	0	0	0	0	0	0
..................................................................................................................................................TCACTGGGCAAAGTGTGTCTCT.........................................................................................	22	1	103.00	103	0	0	86	16	0	1	0	0	0	0	0
........................................................................ATC----AA-AGGTCCTGATCCTG.................................................................................................................................................................	19	1	81.00	81	0	0	60	21	0	0	0	0	0	0	0
....................................................................................................................................................ACTGGGCAAAGTGTGTCTCA.........................................................................................	20	1	76.00	76	0	0	10	66	0	0	0	0	0	0	0
...................................................................................................................................................CACTGGGCAAAGTGTGTCTCA.........................................................................................	21	1	57.00	57	0	6	19	32	0	0	0	0	0	0	0
..................................................................................................................................................TCACTGGGCAAAGTGTGTCTCAC........................................................................................	23	1	48.00	48	0	0	45	3	0	0	0	0	0	0	0
..................................................................................................................................................TCACTGGGCAAAGTGTGTCTCAT........................................................................................	23	1	47.00	47	0	0	41	6	0	0	0	0	0	0	0
..................................................................................................................................................TCACTGGGCAAAGTGTGTC............................................................................................	19	1	41.00	41	0	0	38	3	0	0	0	0	0	0	0
..................................................................................................................................................TCACTGGGCAAAGTGTGTCTCG.........................................................................................	22	1	30.00	30	0	0	6	24	0	0	0	0	0	0	0
......................................................................C-ATC----AA-AGGTCCTGATCCTG.................................................................................................................................................................	20	1	26.00	26	0	0	23	3	0	0	0	0	0	0	0
..................................................................................................................................................TCACTGGGCAAAGTGTGTCTCATT.......................................................................................	24	1	17.00	17	0	0	17	0	0	0	0	0	0	0	0
...................................................................................................................................................CACTGGGCAAAGTGTGTCTCAA........................................................................................	22	1	16.00	16	0	0	7	9	0	0	0	0	0	0	0
...............................................................................................GGGATGCATCTTGTGCAGTCATG...........................................................................................................................................	23	1	15.00	15	0	0	12	3	0	0	0	0	0	0	0
........................................................................................................................................................................AGATCTTGGCCACTTCGAC......................................................................	19	1	14.00	14	0	0	12	2	0	0	0	0	0	0	0
.............................................................................................CTGGGATGCATCTTGTGCAGTC..............................................................................................................................................	22	1	12.00	12	0	0	4	8	0	0	0	0	0	0	0
.....................................................................CC-ATC----AA-AGGTCCTGATCCTG.................................................................................................................................................................	21	1	11.00	11	0	0	10	1	0	0	0	0	0	0	0
..................................................................................................................................................TCACTGGGCAAAGTGTGTCTCAAA.......................................................................................	24	1	9.00	9	0	0	6	3	0	0	0	0	0	0	0
...................................................................................................................................................CACTGGGCAAAGTGTGTCTC..........................................................................................	20	1	7.00	7	0	1	6	0	0	0	0	0	0	0	0
.........................................................................TC----AA-AGGTCCTGATCCTG.................................................................................................................................................................	18	1	6.00	6	0	0	3	3	0	0	0	0	0	0	0
..................................................................................................................................................TCACTGGGCAAAGTGTGTCTCAG........................................................................................	23	1	6.00	6	0	0	4	2	0	0	0	0	0	0	0
................................................................................................GGATGCATCTTGTGCAGTC..............................................................................................................................................	19	1	5.00	5	0	0	4	1	0	0	0	0	0	0	0
.....................................................................................................................................................CTGGGCAAAGTGTGTCTCA.........................................................................................	19	1	4.00	4	0	0	2	2	0	0	0	0	0	0	0
..................................................................................................................................................TCACTGGGCAAAGTGTGTCTCATC.......................................................................................	24	1	4.00	4	0	0	4	0	0	0	0	0	0	0	0
....................................................................ACC-ATC----AA-AGGTCCTGATCCTG.................................................................................................................................................................	22	1	4.00	4	0	0	4	0	0	0	0	0	0	0	0
....................................................................................................................................................ACTGGGCAAAGTGTGTCTCAA........................................................................................	21	1	4.00	4	0	0	1	3	0	0	0	0	0	0	0
........................................................................................................................................................................AGATCTTGGCCACTTCGACGC....................................................................	21	1	4.00	4	0	0	4	0	0	0	0	0	0	0	0
....................................................................................................................................................ACTGGGCAAAGTGTGTCTC..........................................................................................	19	1	3.00	3	0	0	1	2	0	0	0	0	0	0	0
....................................................................................................................................................ACTGGGCAAAGTGTGTCTCAAA.......................................................................................	22	1	3.00	3	0	0	2	1	0	0	0	0	0	0	0
...............................................................................................GGGATGCATCTTGTGCAGTC..............................................................................................................................................	20	1	3.00	3	0	0	3	0	0	0	0	0	0	0	0
................................................................................................GGATGCATCTTGTGCAGTCAT............................................................................................................................................	21	1	3.00	3	0	0	2	1	0	0	0	0	0	0	0
...............................................................................................GGGATGCATCTTGTGCAGTCA.............................................................................................................................................	21	1	3.00	3	0	0	2	1	0	0	0	0	0	0	0
..................................................................................................................................................TCACTGGGCAAAGTGTGTCTAC.........................................................................................	22	1	2.00	2	0	0	0	2	0	0	0	0	0	0	0
....................................................................................................................................................ACTGGGCAAAGTGTGTCTCT.........................................................................................	20	1	2.00	2	0	0	1	1	0	0	0	0	0	0	0
........................................................................................................................................................................AGATCTTGGCCACTTCGACGCAG-.................................................................	23	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0
..................................................................................................................................................TCACTGGGCAAAGTGTGTCTCACT.......................................................................................	24	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0
...................................................................AACC-ATC----AA-AGGTCCTGATCCTG.................................................................................................................................................................	23	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0
..................................................................................................................................................TCACTGGGCAAAGTGTGT.............................................................................................	18	1	2.00	2	0	0	1	1	0	0	0	0	0	0	0
..................................................................................................................................................TCACTGGGCAAAGTGTGTCTCATA.......................................................................................	24	1	2.00	2	0	0	1	1	0	0	0	0	0	0	0
........................................................................................................................................................................AGATCTTGGCCACTTCGACG.....................................................................	20	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0
........................................................................................................................................................................AGATCTTGGCCACTTCGACA.....................................................................	20	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0
..................................................................................................................................................TCACTGGGCAAAGTGTGTCTCATTT......................................................................................	25	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0
..................................................................................................................................................TCACTGGGCAAAGTGTGTCTCACC.......................................................................................	24	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0
.....................................................................................................................................................CTGGGCAAAGTGTGTCTC..........................................................................................	18	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0
..................................................................................................................................................TCACTGGGCAAAGTGTGTCTCTT........................................................................................	23	1	2.00	2	0	0	2	0	0	0	0	0	0	0	0
......................................................................................................................................................TGGGCAAAGTGTGTCTCA.........................................................................................	18	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0
..................................................................................................................................................TCACTGGGCAAAGTGTGTCTCATAC......................................................................................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................TCACTGGGCAAAGTGTGTCTCTC........................................................................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................TCACTGGGCAAAGTGTGTCTGT.........................................................................................	22	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0
.....................................................................CC-ATC----AA-AGGTCCTGATCCT..................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0

droEre2

GCC---AA-----------------------------------------TTG-------------TGAACC-CAC----CA-AGGTCCTGATCCTGGGATGCATCTTGTGCAGTTATGTTTCTA---------TCT------CACATCACTGGGCAAAGTGTGTCTCAAGATCCTGGCCACTTCGACGCAA-CTAC-AAATCAAC-A----------AC-----AAAT-----------GC------AG-----AGT	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
..................................................................................................................................................TCACTGGGCAAAGTGTGTCTCA.........................................................................................	22	1	4885.00	4885	1163	327	6	3308	29	52	0
..................................................................................................................................................TCACTGGGCAAAGTGTGTCTC..........................................................................................	21	1	329.00	329	55	180	0	87	2	5	0
...................................................................................................................................................CACTGGGCAAAGTGTGTCTCA.........................................................................................	21	1	93.00	93	89	0	0	4	0	0	0
..................................................................................................................................................TCACTGGGCAAAGTGTGTCT...........................................................................................	20	1	77.00	77	13	31	0	30	2	1	0
..................................................................................................................................................TCACTGGGCAAAGTGTGTCTCAA........................................................................................	23	1	40.00	40	20	3	0	17	0	0	0
..................................................................................................................................................TCACTGGGCAAAGTGTGTCTCC.........................................................................................	22	1	29.00	29	0	2	1	26	0	0	0
....................................................................................................................................................ACTGGGCAAAGTGTGTCTCA.........................................................................................	20	1	18.00	18	4	0	0	14	0	0	0
........................................................................CAC----CA-AGGTCCTGATCCTG.................................................................................................................................................................	19	1	18.00	18	8	1	0	9	0	0	0
..................................................................................................................................................TCACTGGGCAAAGTGTGTCTCT.........................................................................................	22	1	16.00	16	1	5	0	9	1	0	0
..................................................................................................................................................TCACTGGGCAAAGTGTGTCTCAT........................................................................................	23	1	10.00	10	3	5	0	2	0	0	0
..................................................................................................................................................TCACTGGGCAAAGTGTGTCTCG.........................................................................................	22	1	9.00	9	1	0	0	8	0	0	0
......................................................................C-CAC----CA-AGGTCCTGATCCTG.................................................................................................................................................................	20	1	9.00	9	6	1	0	2	0	0	0
..................................................................................................................................................TCACTGGGCAAAGTGTGTCTCAC........................................................................................	23	1	8.00	8	0	3	0	5	0	0	0
..................................................................................................................................................TCACTGGGCAAAGTGTGTCC...........................................................................................	20	1	8.00	8	0	8	0	0	0	0	0
...................................................................................................................................................CACTGGGCAAAGTGTGTCTC..........................................................................................	20	1	7.00	7	6	1	0	0	0	0	0
................................................................................................GGATGCATCTTGTGCAGTTATG...........................................................................................................................................	22	1	6.00	6	6	0	0	0	0	0	0
..................................................................................................................................................TCACTGGGCAAAGTGTGTCTG..........................................................................................	21	1	4.00	4	4	0	0	0	0	0	0
..................................................................................................................................................TCACTGGGCAAAGTGTGTC............................................................................................	19	1	4.00	4	1	3	0	0	0	0	0
...................................................................................................................................................CACTGGGCAAAGTGTGTCT...........................................................................................	19	1	3.00	3	3	0	0	0	0	0	0
..................................................................................................................................................TCACTGGGCAAAGTGTGTCTCAG........................................................................................	23	1	2.00	2	2	0	0	0	0	0	0
........................................................................................................................................................................AGATCCTGGCCACTTCGACG.....................................................................	20	1	2.00	2	1	0	0	1	0	0	0
..................................................................................................................................................TCACTGGGCAAAGTGTGTCTT..........................................................................................	21	1	2.00	2	0	0	0	1	0	1	0
...................................................................................................................................................CACTGGGCAAAGTGTGTCTCAA........................................................................................	22	1	2.00	2	2	0	0	0	0	0	0
.....................................................................................................................................................CTGGGCAAAGTGTGTCTCA.........................................................................................	19	1	2.00	2	1	0	0	1	0	0	0
....................................................................................................................................................ACTGGGCAAAGTGTGTCTCAA........................................................................................	21	1	2.00	2	1	0	0	1	0	0	0
....................................................................ACC-CAC----CA-AGGTCCTGATCCTG.................................................................................................................................................................	22	1	2.00	2	1	1	0	0	0	0	0
..................................................................................................................................................TCACTGGGCAAAGTGTGTCTCAAA.......................................................................................	24	1	2.00	2	2	0	0	0	0	0	0
................................................................................................GGATGCATCTTGTGCAGTTA.............................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0
....................................................................................................................................................ACTGGGCAAAGTGTGTCTC..........................................................................................	19	1	1.00	1	0	0	0	1	0	0	0
..................................................................................................................................................TCACTGGGCAAAGTGTGTCA...........................................................................................	20	1	1.00	1	0	1	0	0	0	0	0
..................................................................................................................................................TCACTGGGCAAAGTGTGTCTCAAG.......................................................................................	24	1	1.00	1	0	1	0	0	0	0	0
...................................................................................................................................................CACTGGGCAAAGTGTGTCTCAAG.......................................................................................	23	1	1.00	1	1	0	0	0	0	0	0
....................................................................................................................................................ACTGGGCAAAGTGTGTCTCAAG.......................................................................................	22	1	1.00	1	0	0	0	1	0	0	0
......................................................................C-CAC----CA-AGGTCCTGATCC...................................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0	0
.....................................................................................................................................................CTGGGCAAAGTGTGTCTCAAT.......................................................................................	21	1	1.00	1	1	0	0	0	0	0	0
...................................................................................................................................................CACTGGGCAAAGTGTGTCTCAT........................................................................................	22	1	1.00	1	1	0	0	0	0	0	0
..................................................................................................................................................TCACTGGGCAAAGTGTGTCTCATT.......................................................................................	24	1	1.00	1	0	1	0	0	0	0	0
..................................................................................................................................................TCACTGGGCAAAGTGTGTCTCTT........................................................................................	23	1	1.00	1	0	1	0	0	0	0	0
........................................................................................................................................................................AGATCCTGGCCACTTCGAC......................................................................	19	1	1.00	1	0	1	0	0	0	0	0

dgr-mir-3-1

scaffold_15112:2109014-2109079 -

Known

Unknown

3pUTR

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-26.3	-26.2	-26.0