ID:

dgr-mir-274

 Coordinate:

scaffold_15110:13805621-13805702 -

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

antisense_to_intron

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-42.4 -42.3 -42.3

Flybase annnotation

Antisense to intron [Dgri\GH16626-in]; utr5 [utr5_plus_7681]; pre_miRNA [Dgri\mir-274-RM]; miRNA [Dgri\miR-274-RA]

No Repeatable elements found

Sense Strand Reads

TGAAAAAGTGAAATAGTGCAACGTATACGAGTCCTGTGCGTGTTGCAGTTTCGGTTTGTGACCGACACTAACGGGTAGTTAAAGGGCATCCTCGCATTCTGCTGGCTTACTCGTTTTTGCGATCACAAATTCTGAAATTGCAACGAAAATCAACAAAACCATAAAAAAGAAAAACCATAAAA

***************************************.(((((((((((((((((((((.((.((..((((((((((((.(((((......))..)))..)))).))))))))..)))).)))))))..))))))))))))))..*********************************** 		Read size # Mismatch Hit Count Total Norm Total M041

female body

 V109

male body
......................................................TTTGTGACCGACACTAACGGGTA......................................................................................................... 23 0 1 3069.00 3069 2982 87
......................................................TTTGTGACCGACACTAACGGGT.......................................................................................................... 22 0 1 1292.00 1292 1004 288
......................................................TTTGTGACCGACACTAACGGG........................................................................................................... 21 0 1 316.00 316 312 4
.......................................................TTGTGACCGACACTAACGGGTA......................................................................................................... 22 0 1 266.00 266 266 0
.......................................................TTGTGACCGACACTAACGGGT.......................................................................................................... 21 0 1 108.00 108 108 0
......................................................TTTGTGACCGACACTAACGGGTAT........................................................................................................ 24 1 1 53.00 53 50 3
.......................................................TTGTGACCGACACTAACGGG........................................................................................................... 20 0 1 28.00 28 28 0
......................................................TTTGTGACCGACACTAACGGGTAA........................................................................................................ 24 1 1 27.00 27 27 0
......................................................TTTGTGACCGACACTAACGGGTT......................................................................................................... 23 1 1 26.00 26 23 3
........................................................TGTGACCGACACTAACGGGTA......................................................................................................... 21 0 1 24.00 24 24 0
......................................................TTTGTGACCGACACTAACGG............................................................................................................ 20 0 1 21.00 21 20 1
.....................................................CTTTGTGACCGACACTAACGGGTA......................................................................................................... 24 1 1 16.00 16 16 0
........................................................TGTGACCGACACTAACGGGT.......................................................................................................... 20 0 1 9.00 9 8 1
.....................................................ATTTGTGACCGACACTAACGGGTA......................................................................................................... 24 1 1 9.00 9 9 0
......................................................TTTGTGACCGACACTAACG............................................................................................................. 19 0 1 8.00 8 8 0
......................................................TTTGTGACCGACACTAACGGGCA......................................................................................................... 23 1 1 7.00 7 7 0
......................................................TTTGTGACCGACACTAACGGGAA......................................................................................................... 23 1 1 7.00 7 7 0
.....................................................TTTTGTGACCGACACTAACGGGTA......................................................................................................... 24 1 1 7.00 7 7 0
.....................................................CTTTGTGACCGACACTAACGGGT.......................................................................................................... 23 1 1 6.00 6 6 0
.........................................................GTGACCGACACTAACGGGTA......................................................................................................... 20 0 1 6.00 6 6 0
.....................................................GTTTGTGACCGACACTAACGGGTA......................................................................................................... 24 0 1 5.00 5 5 0
......................................................TTTGTGACCGACACTAAAGGGT.......................................................................................................... 22 1 1 5.00 5 1 4
.......................................................TTTTGACCGACACTAACGGGTA......................................................................................................... 22 1 1 4.00 4 3 1
......................................................TTTGTGACCGACACTAACGGGTAC........................................................................................................ 24 1 1 4.00 4 4 0
.....................................................GTTTGTGACCGACACTAACGGGT.......................................................................................................... 23 0 1 4.00 4 4 0
......................................................TTTGTGACCGACACTAACGGGG.......................................................................................................... 22 1 1 4.00 4 4 0
.....................................................TTTTGTGACCGACACTAACGGGT.......................................................................................................... 23 1 1 4.00 4 4 0
......................................................TTTGTAACCGACACTAACGGGT.......................................................................................................... 22 1 1 3.00 3 1 2
......................................................TTTGTGACCGACACTAACGGGTTT........................................................................................................ 24 2 1 3.00 3 3 0
.......................................................TTGTGACCGACACTAACGGGTAT........................................................................................................ 23 1 1 3.00 3 3 0
.......................................................TTGTGACCGACACTAACGGGTAA........................................................................................................ 23 1 1 3.00 3 3 0
......................................................TTTGTGACCGACACTAACGGGA.......................................................................................................... 22 1 1 3.00 3 2 1
......................................................TTTGTGACCGACACTAACGGGTATT....................................................................................................... 25 1 1 3.00 3 3 0
......................................................TTTGTGACCGACACTAAGGGGT.......................................................................................................... 22 1 1 3.00 3 0 3
......................................................TTTGTGACCGACACTAACGGGC.......................................................................................................... 22 1 1 3.00 3 1 2
......................................................TTTGTGACCGACACTAGCGGGTA......................................................................................................... 23 1 1 3.00 3 2 1
......................................................TTTGTGACCGACACTAATGGGT.......................................................................................................... 22 1 1 2.00 2 0 2
......................................................TTTGTGACCGACACTAACGGGTAAT....................................................................................................... 25 1 1 2.00 2 2 0
......................................................TTTCTGACCGACACTAACGGGT.......................................................................................................... 22 1 1 2.00 2 1 1
......................................................TTTGTGACCGACACTAACGGGTG......................................................................................................... 23 1 1 2.00 2 2 0
......................................................TTTGTGCCCGACACTAACGGGT.......................................................................................................... 22 1 1 2.00 2 0 2
......................................................TTTGTTACCGACACTAACGGGT.......................................................................................................... 22 1 1 2.00 2 1 1
.......................................................TTGTGACCGACACTAACGG............................................................................................................ 19 0 1 2.00 2 2 0
......................................................TTTGTGACCGACACTAACGGGTATA....................................................................................................... 25 2 1 2.00 2 2 0
......................................................TTTGTGGCCGACACTAACGGGT.......................................................................................................... 22 1 1 2.00 2 2 0
......................................................TTTGTGACCGACATTAACGGGT.......................................................................................................... 22 1 1 2.00 2 2 0
......................................................TTTGTGACCGACACTAACGGGGA......................................................................................................... 23 1 1 2.00 2 2 0
......................................................TTTGTTACCGACACTAACGGGTA......................................................................................................... 23 1 1 2.00 2 2 0
......................................................TTTGTGACCTACACTAACGGGT.......................................................................................................... 22 1 1 2.00 2 2 0
.....................................................GTTTGTGACCGACACTAACGGG........................................................................................................... 22 0 1 2.00 2 2 0
......................................................TTCGTGACCGACACTAACGGGT.......................................................................................................... 22 1 1 2.00 2 0 2
......................................................TTTGTGACCGACACTAAC.............................................................................................................. 18 0 1 2.00 2 2 0
......................................................TTTGTGACCGACACTAACGGGTC......................................................................................................... 23 1 1 2.00 2 2 0
......................................................TTTGTGACCTACACTAACGGGTA......................................................................................................... 23 1 1 2.00 2 2 0
.............................................................................................................CTCGTTTTTGCGATCACAAATTC.................................................. 23 0 1 2.00 2 2 0
......................................................TTTGTGACCGACACTAACGGGTATG....................................................................................................... 25 2 1 2.00 2 2 0
......................................................TTTGTGACCGACACTAGCGGGT.......................................................................................................... 22 1 1 2.00 2 2 0
......................................................TCTGTGACCGACACTAACGGGTA......................................................................................................... 23 1 1 2.00 2 1 1
................................................TCTTGCTTTGTGACCGACACTAACGGGT.......................................................................................................... 28 3 1 1.00 1 1 0
...............................................................................................................CGTTTTTGCGATCACAAATT................................................... 20 0 1 1.00 1 0 1
....................................................GTTTTGTGACCGACACTAACGGG........................................................................................................... 23 1 1 1.00 1 1 0
.......................................................TTGTGACCGACACTGACGGGTA......................................................................................................... 22 1 1 1.00 1 1 0
......................................................CTTGTGACCGACACTAACGGGTA......................................................................................................... 23 1 1 1.00 1 0 1
......................................................TCTGTGACCGACACTAACGGGT.......................................................................................................... 22 1 1 1.00 1 0 1
......................................................TTTGGGACCGACACTAACGGGTA......................................................................................................... 23 1 1 1.00 1 0 1
......................................................TTTGTAACCGACACTAACGGGTAT........................................................................................................ 24 2 1 1.00 1 0 1
......................................................TTTGTGACCAACACTAACGGGT.......................................................................................................... 22 1 1 1.00 1 1 0
.......................................................TTTTGACCGACACTAACGGGT.......................................................................................................... 21 1 1 1.00 1 0 1
..........................................................TGACCGACACTAACGGGT.......................................................................................................... 18 0 1 1.00 1 1 0
....................................................TATTTGTGACCGACACTAACGGGTA......................................................................................................... 25 2 1 1.00 1 1 0
......................................................TGTGTGACCGACACTAACGGGTA......................................................................................................... 23 1 1 1.00 1 1 0
......................................................TTTGTGACAGACACTAACGGGTA......................................................................................................... 23 1 1 1.00 1 0 1
...............................................................................................................CGTTTTTGCGATCACAAATTCT................................................. 22 0 1 1.00 1 1 0
...............................................................................................................CGTTTTTGCGATCACAAAT.................................................... 19 0 1 1.00 1 1 0
...........................................................GACCGACACTAACGGGTA......................................................................................................... 18 0 1 1.00 1 1 0
......................................................TTTGTGACCGACACTAACGGGTCA........................................................................................................ 24 2 1 1.00 1 1 0
.........................................................GTGACCGACACTAACGGGTAT........................................................................................................ 21 1 1 1.00 1 1 0
......................................................TTTTTGACCGACACTAACGGGTA......................................................................................................... 23 1 1 1.00 1 1 0
......................................................TTTGTGACCGACACTAACGGGTCT........................................................................................................ 24 2 1 1.00 1 0 1
..................................................TTTGTTTGTGACCGACACTAACGGGT.......................................................................................................... 26 2 1 1.00 1 1 0
......................................................TTTGTGACCGACACTAACGGGTAACG...................................................................................................... 26 3 1 1.00 1 1 0
......................................................TTTGTGACCGACACTAACGGGTATTT...................................................................................................... 26 1 1 1.00 1 1 0
.....................................................ATTTGTGACCGACACTAACGGGT.......................................................................................................... 23 1 1 1.00 1 1 0
......................................................TTTGTGGCCGACACTAACGGGTA......................................................................................................... 23 1 1 1.00 1 1 0
.......................................................TTGTGACCGACACTAACGGGGA......................................................................................................... 22 1 1 1.00 1 1 0
......................................................TTTGTGACCGAAACTAACGGGTA......................................................................................................... 23 1 1 1.00 1 0 1
......................................................TTTGTGACCCACACTAACGGGTA......................................................................................................... 23 1 1 1.00 1 1 0
......................................................TTTGTGACCGACACTAACGGGTCTG....................................................................................................... 25 3 1 1.00 1 1 0
......................................................TTTGTGACTGACACTAACGGGT.......................................................................................................... 22 1 1 1.00 1 0 1
......................................................TTTGTGACCGACACTAACGGGTTGTTG..................................................................................................... 27 2 1 1.00 1 1 0
..............................................................................................................TCGTTTTTGCGATCAAAAATTC.................................................. 22 1 1 1.00 1 0 1
......................................................TTTGTGACCGACACTAAAGGGTA......................................................................................................... 23 1 1 1.00 1 0 1
....................................................ATTTTGTGACCGACACTAACGGGTA......................................................................................................... 25 2 1 1.00 1 1 0
..........................................................TGACCGACACTAACGGGTA......................................................................................................... 19 0 1 1.00 1 1 0
......................................................TTTGTGACCGAGACTAACGGG........................................................................................................... 21 1 1 1.00 1 1 0
......................................................TTTGTGGCCGACACTAACGGG........................................................................................................... 21 1 1 1.00 1 1 0
.............................................................................................................CTCGTTTTTGCGATCACAAATC................................................... 22 1 1 1.00 1 0 1
......................................................TTTGTGACCGACACTAACAGGTA......................................................................................................... 23 1 1 1.00 1 0 1
......................................................TTTGTGACCGGCACTAACGGGTA......................................................................................................... 23 1 1 1.00 1 1 0
.............................................................................................................CTCGTTTTTGCTATCACAAATTCTG................................................ 25 1 1 1.00 1 1 0
......................................................TTTGTGACCGACACTAACGGGTAAG....................................................................................................... 25 2 1 1.00 1 1 0
...................................................AACTTTGTGACCGACACTAACGGGT.......................................................................................................... 25 3 1 1.00 1 1 0
.....................................................ATTTGTGACCGACACTAACGGGTAT........................................................................................................ 25 2 1 1.00 1 1 0
.......................................................TTGTGACCGACACTAACGGGTT......................................................................................................... 22 1 1 1.00 1 1 0
.............................................................................GTTAAAGGGCATCCTCGCATTCTGCT............................................................................... 26 0 1 1.00 1 1 0
.....................................................ATTTGTGACCGACACTAACGGG........................................................................................................... 22 1 1 1.00 1 1 0
......................................................TTTGTGACCGACACTAACGGGTATGTA..................................................................................................... 27 2 1 1.00 1 1 0
........................................................TTTGACCGACACTAACGGGT.......................................................................................................... 20 1 1 1.00 1 0 1
......................................................TTTGTGACCGACACTAACGGGTTTT....................................................................................................... 25 2 1 1.00 1 1 0
......................................................TTTGTGACCGACACTAACGGGTAGAT...................................................................................................... 26 1 1 1.00 1 1 0
......................................................TTTGTGACCGACACTAACGGGTATTTT..................................................................................................... 27 2 1 1.00 1 1 0
......................................................TTTGTGACCGACAGTAACGGGTA......................................................................................................... 23 1 1 1.00 1 0 1
......................................................TTTGTGACCGACACTAACGGGTACCA...................................................................................................... 26 3 1 1.00 1 1 0
......................................................TTTGTGACCGACACTAACGGAT.......................................................................................................... 22 1 1 1.00 1 0 1
......................................................TTGGTGACCGACACTAACAGGT.......................................................................................................... 22 2 1 1.00 1 0 1
.........................................................GTGACCGACACTAACGGGT.......................................................................................................... 19 0 1 1.00 1 1 0
.....................................................GTTTGTGACTGACACTAACGGGT.......................................................................................................... 23 1 1 1.00 1 1 0
......................................................TTTGTGACCGACACTAACGGGTAG........................................................................................................ 24 0 1 1.00 1 1 0
......................................................GTTGTGACCGACACTAACGGGTA......................................................................................................... 23 1 1 1.00 1 1 0
......................................................TTTGTGACCGACACTAACGGA........................................................................................................... 21 1 1 1.00 1 1 0
......................................................TTTGTGACCGACACTAACGGGTATCT...................................................................................................... 26 2 1 1.00 1 1 0
.........................................................GTGACCGACACTAACGGG........................................................................................................... 18 0 1 1.00 1 1 0
.............................................................................................................CTCGTTTTTGCGATCACAAATTCT................................................. 24 0 1 1.00 1 1 0
......................................................TTTGTAACCGACACTAACGGG........................................................................................................... 21 1 1 1.00 1 1 0
......................................................TTTGTCACCGACACTAACGGGTA......................................................................................................... 23 1 1 1.00 1 1 0
......................................................TTTGTGACCGACACTGACGGGT.......................................................................................................... 22 1 1 1.00 1 1 0
.......................................................GTGTGACCGACACTAACGGGT.......................................................................................................... 21 1 1 1.00 1 1 0
...................................................CTATTTGTGACCGACACTAACGGGTA......................................................................................................... 26 2 1 1.00 1 1 0
......................................................TTTGGGACCGACACTAACGGGT.......................................................................................................... 22 1 1 1.00 1 0 1
......................................................GTTGTGACCGACACTAACGGGT.......................................................................................................... 22 1 1 1.00 1 1 0
......................................................TTAGTGACCGACACTAACGGGT.......................................................................................................... 22 1 1 1.00 1 0 1
....................................................ACTTTGTGACCGACACTAACGGGTA......................................................................................................... 25 2 1 1.00 1 1 0
......................................................TTTGAGACCGACACTAACGGGT.......................................................................................................... 22 1 1 1.00 1 1 0
......................................................TTTGTGACCGACACTAACGCGT.......................................................................................................... 22 1 1 1.00 1 0 1
....................................................CTTTTGTGACCGACACTAACGGGTA......................................................................................................... 25 2 1 1.00 1 1 0
.......................................................TTGTGACCGACACTAACGGGGAT........................................................................................................ 23 2 1 1.00 1 1 0
......................................................TTTGTGATCGACACTAACGGGTA......................................................................................................... 23 1 1 1.00 1 1 0
.......................................................CTGTGACCGACACTAACGGGTA......................................................................................................... 22 1 1 1.00 1 1 0
......................................................TTTGTGACCGACACTAACGGGTATAGA..................................................................................................... 27 3 1 1.00 1 1 0
.......................................................TTGTGACCGACACTAACGGGTAC........................................................................................................ 23 1 1 1.00 1 1 0
..................................................TTGGTTTGTGACCGACACTAACGGGTA......................................................................................................... 27 1 1 1.00 1 1 0
..................................................TCACTTTGTGACCGACACTAACGGGTA......................................................................................................... 27 2 1 1.00 1 1 0
..................................................TAGCTTTGTGACCGACACTAACGGGTA......................................................................................................... 27 2 1 1.00 1 1 0
.......................................................TTGTGACCGACGCTAACGGGTA......................................................................................................... 22 1 1 1.00 1 1 0

Anti-sense strand reads

ACTTTTTCACTTTATCACGTTGCATATGCTCAGGACACGCACAACGTCAAAGCCAAACACTGGCTGTGATTGCCCATCAATTTCCCGTAGGAGCGTAAGACGACCGAATGAGCAAAAACGCTAGTGTTTAAGACTTTAACGTTGCTTTTAGTTGTTTTGGTATTTTTTCTTTTTGGTATTTT

***********************************.(((((((((((((((((((((.((.((..((((((((((((.(((((......))..)))..)))).))))))))..)))).)))))))..))))))))))))))..*************************************** 		Read size # Mismatch Hit Count Total Norm Total

Re-alignment of all predicted orthologs

Species Coordinate ID Type Alignment
droGri2 scaffold_15110:13805571-13805752 - dgr-mir-274 Known_mirbase TGA--AAAAGTGAA-------------------------------A-------TAGT-----------------GC------AACGTATACGAGTCCT------------------------------GTGCGTGTTGCAGTTTCGGTTTGTGACCGACACTAACGGGTAGTTAAAGGGCATCCTCGC-------A--TTCTGCTGGC-T--TACTCGTTTTTGCGATCACAAATTCTGAAATTGCAACGAAA-ATCAACAAAACCATAAAAAAG---AAAAA-------------------------------CCATAAAA
droVir3 scaffold_13049:23860694-23860843 + dvi-mir-274 Known_mirbase AGT--G--------------------------AATCC------------------------------CAA-----------------TGTCGCATCCT------------------------------GT--TTGTTGCAGTTTCGGTTTGTGACCGACACTAACGGGTAGTTGG---GGCACCTCGA---A------T-ACGCTGTT-T--TACTCGTTTTTGCGATCACAAATTCTGAAATTGCAACGAAA-AGCAACAAG---------------AAAA-----TT----------------------------TCTCA
droMoj3 scaffold_6680:18485461-18485601 + dmo-mir-274 Known_mirbase TGA--AT----------C-------------------------------------------------TGT-TGTCAAGTG------------TATCCT----------------------------------GTGTTGCAGTTTCGGTTTGTGACCGACACTAACGGGTAGTTGA--GGCATC-TCGT---A------T-TCGCTGTT-TTATACTCGTTTTTGCGATCACAAATTCTGAAATTGCAACGAAA-CGCAACGAAA----------------------------------------------------------
droWil2 scf2_1100000004762:2705118-2705293 - dwi-mir-274 Known_mirbase TGT--TGT--------------------------TT--------------------------------TGTGATTA----TTTT-----TAATATCC------------------------------------TGTTGCAGTTTCATTTTGTGACCGACACTAACGGGTAGTAAC-GGGTTAAC-----AAAGTCGTT--TTTCTGGCCTTTTACTCGTTTTTGCGATCACAAATTCTGAAATTGCAGCAAAAGATCAACGTATACAACAAACACATAAAA---------------------------------TGATAAGA
dp5 XR_group6:10040174-10040332 - dps-mir-274 Known_mirbase TGG--C--------------------------ATTCCCCTGGGACC-------TGGGACCTGGCACCTGG-----------------AACCTGGTCCC----------------------------------GTGCTGCAGTTTCATTTTGTGACCGACACTAACGGGTAATGGC-TGGCC---------------------GCAGGA-C--TACTCGTTTTTGCGATCACA-ATACTGAAATTGCAGCAACG-AGCAGCGAAACTGTGGAA--------------------------------------------------
droPer2 scaffold_61:320236-320403 - dpe-mir-274 Known_mirbase GGT--GGC------------------------ATTCCCCTGGGACCTGGCACCTGGGACCTGGCACCTGG-----------------GACCTGGTCCC----------------------------------GTGCTGCAGTTTCATTTTGTGACCGACACTAACGGGTAATGGC-TGGCC---------------------GCAGGA-C--TACTCGTTTTTGCGATCACA-ATACTGAAATTGCAGCAACG-AGCAGCGAAACTGTGGAA--------------------------------------------------
droAna3 scaffold_13337:5918609-5918728 + dan-mir-274 Known_mirbase TAA--AAAACAGA------------------------------------------------------------------------------------A----------------------------------ATGTTGCAGTTTCGTTTTGTGACCGACACTAACGGGTATTTTACAGGACA-------------------TACAGGA-T--TACTCGTTTTTGCGATCACAAATCCTGAAATTGCAGCAAAA-AACAGCAAA-----------------------------------------------------------
droBip1 scf7180000396371:1256496-1256688 + AAA--G----CTAA--------------------------------------------------------------------------------ACTT-TATTACGGAGTGAAGTGTTTTTGAAGACAGA--ATGTTGCAGTTTCGTTTTGTGACCGACACTAACGGGTATTTTACAGGAT-------------------TTACAGGA-T--TACTCGTTTTTGCGATCACAAATCCTGAAATTGCAGCAAAA-AACAGCAAAAATAAAA-----------------TATCATAGTTGGTGTAAATATTAGAAACCGTAAAA
droKik1 scf7180000302391:1192144-1192302 - TAT--ATAGTGGAA-------------------------------A-------TAGT-----------------AAAAAGT-T------CC-TATCCTTTTTTAA--------------------------CGTGTTGCTGTTTCGCTTTGTGACCGACACTAACGGGTAATTGTTTGGCCTTC---T--TAGCCGTT--CCGCTGGA-T--TACTCGTTTTTGCGATCACAAATCCTGAAATTGCAGCTAAG-AGCAGCA-------------------------------------------------------------
droFic1 scf7180000454113:3056683-3056874 - TTGCCCAGG-CTAAAGCCA--------------------------------------------------GTGATCAGGAGT-T------CC-TATCCT----------------------------------GTGTTGTTGTTTCGTTTTGTGACCGACACTAACGGGTAATTGATCGGCCCCC---A-AAAGCCGCCCACCGCAGGA-T--TACTCGTTTTTGCGATCACAAATCCTGAAATTTCAGCAAAG-AGCAGCAA-TTCAGGGAACCAGTGAAAATATAAT----------------------------ATAGTA
droEle1 scf7180000490993:2151282-2151465 - CAA--TAAAGTCAAAAGAAATCACCTCATGGTGCTTC------------------------------TGGTGATCAAGAGT-T------CCGAATCCT----------------------------------GTGCTGCAGTTTCGTTTTGTGACCGACACTAACGGGTAATTGATTGGCCC-------------------CGCAGGA-T--TACTCGTTTCTGCGATCACAAATCATGAAATTGCAGCCAAA-AGCAACAAAATCGTGGAACCAGTGAA------------------------------------------
droRho1 scf7180000778919:9002-9158 + TGA--T--------------------------------------------------------------------CAAGAGT-T------CCAAATCCT----------------------------------GTGTTGCAGTTTCGTTTTGTGACCGACACTAACGGGTAATTGTTCGGCT-------------------CCGCAGGA-T--TACTCGTTTTTGCGATCACAAATCATGAAATTGCAGCAAAA-AGCAGCAAAATCGTGGAACCAGTGAAAAAAT---A----------------------------TTCAA
droBia1 scf7180000302334:85615-85801 + CCC--AAAG-CTACTCCAA--------------------------------------------------ATCACC-------TCCAAACCCACATCCT----------------------------------GTGTTGCAGTTTCGTTTTGTGACCGACACTAACGGGTAATTGTCCGGCCCCC---A-GGAGCCGCC--CCTCAGGA-T--TACTCGTTTTTGCGATCACAAATCCTGAAATTGCAGCAAAG-AGCAGCAAAGTCCTGGAACCAGTGAAAATAC---A---------------------------AT-AAA
droTak1 scf7180000414445:560318-560492 - GGA--AAA--------CAA--------------------------------------------------GTTACCAAGAGT-TCCGAATCCGAATCCT----------------------------------GTGTTGCAGTTTCGTTTTGTGACCGACACTAACGGGTAATTGTTCGGCCCCC---A-AAAGCCGCC--CCGCAGGA-T--TACTCGTTTTTGCGATCACAAATCCTGAAATTGCAGCAAAG-AGCAGCAAAATCAAGGAACCAGTGAA------------------------------------------
droEug1 scf7180000409711:3524233-3524390 + AT------------------------------------------------------------------------CAAGAGT-T------CCAAATCCT----------------------------------GTGTTGCAGTTTCGTTTTGTGACCGACACTAACGGGTAATTGTATGGCCTAA---AAGGAGCCGCT--CACCAGGA-T--TACTCGTTTTTGCGATCACAAATCATGAAATTGCAGCAAAA-AGCAGCTAAATCAGGGAACTAGTGAA------------------------------------------
dm3 chr3L:11649999-11650158 + dme-mir-274 Known_mirbase TGG--T--------------------------AGTTT------------------------------TGG-----------------TGACGAATCCT----------------------------------GTGTTGCAGTTTCGTTTTGTGACCGACACTAACGGGTAATTGTTTGGCCGC--------------------CAGGA-T--TACTCGTTTTTGCGATCACAAATTATGAAATTGCAGCAAAA-CTCAACGAAATTGTGGAACCAGTAAAAATAG---A------------------T--------AGAAAA
droSim2 3l:11358240-11358387 + dsi_305 confident TAG------------------------------------------------------------------------------------TGACAAATCCT----------------------------------GTGTTGCAGTTTCGTTTTGTGACCGACACTAACGGGTAATTGTTTGGTCAC--------------------CAGGA-T--TACTCGTTTTTGCGATCACAAATCATGAAATTGCAGCAAAA-CGCAACAAAGTCGTGGAACTAGTGAAAATAT---A----------------------------T-AGA
droSec2 scaffold_0:3836996-3837167 + dse-mir-274 Known_mirbase TAA--T----TTTA----------ATATTGTTAGTTT------------------------------TAG-----------------TGACAAATCCT----------------------------------GTGTTGCAGTTTCGTTTTGTGACCGACACTAACGGGTAATTGTTTGATCAC--------------------CAGGA-T--TACTCGTTTTTGCGATCACAAATCATGAAATTGCAGCAAAA-CGCAACAAATATATAGAAAATATA-----------------------------TAGAAAATAATAAGT
droYak3 3L:11678620-11678755 + dya-mir-274 Known_mirbase TTG--AT---------------------------T--------------------------------TTA-----------------TGCCGAATCCT----------------------------------GTGTTGCAGTTTCGTTTTGTGACCGACACTAACGGGTAATTGTTTGGTCGC--------------------CAGGA-T--TACTCGTTTTTGCGATCACAAATCATGAAATTGCAGCAAAA-CGCAACAAAGTCGTGAAA--------------------------------------------------
droEre2 scaffold_4784:11632292-11632433 + der-mir-274 Known_mirbase GG----------------------------------------------------------------------------------------CCAATCCT----------------------------------GTGTTGCAGTTTCGTTTTGTGACCGACACTAACGGGTAATTGTTTGGCCGC--------------------CAGGA-T--TACTCGTTTTTGCGATCACAAATCATGAAATTGCAGCAAAA-CGCAACGAAGTCGTGAAGCCAGTGAAAA----------------------------------ATAATA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droGri2
TGA--AAAAGTGAA-------------------------------A-------TAGT-----------------GC------AACGTATACGAGTCCT------------------------------GTGCGTGTTGCAGTTTCGGTTTGTGACCGACACTAACGGGTAGTTAAAGGGCATCCTCGC-------A--TTCTGCTGGC-T--TACTCGTTTTTGCGATCACAAATTCTGAAATTGCAACGAAA-ATCAACAAAACCATAAAAAAG---AAAAA-------------------------------CCATAAAASizeHit CountTotal NormTotalM041

Female-body		V109

Male-body
...................................................................................................................................................TTTGTGACCGACACTAACGGGTA........................................................................................................................................................2313069.003069298287
...................................................................................................................................................TTTGTGACCGACACTAACGGGT.........................................................................................................................................................2211292.0012921004288
...................................................................................................................................................TTTGTGACCGACACTAACGGG..........................................................................................................................................................211316.003163124
....................................................................................................................................................TTGTGACCGACACTAACGGGTA........................................................................................................................................................221266.002662660
....................................................................................................................................................TTGTGACCGACACTAACGGGT.........................................................................................................................................................211108.001081080
...................................................................................................................................................TTTGTGACCGACACTAACGGGTAT.......................................................................................................................................................24153.0053503
....................................................................................................................................................TTGTGACCGACACTAACGGG..........................................................................................................................................................20128.0028280
...................................................................................................................................................TTTGTGACCGACACTAACGGGTAA.......................................................................................................................................................24127.0027270
...................................................................................................................................................TTTGTGACCGACACTAACGGGTT........................................................................................................................................................23126.0026233
.....................................................................................................................................................TGTGACCGACACTAACGGGTA........................................................................................................................................................21124.0024240
...................................................................................................................................................TTTGTGACCGACACTAACGG...........................................................................................................................................................20121.0021201
.....................................................................................................................................................TGTGACCGACACTAACGGGT.........................................................................................................................................................2019.00981
...................................................................................................................................................TTTGTGACCGACACTAACG............................................................................................................................................................1918.00880
......................................................................................................................................................GTGACCGACACTAACGGGTA........................................................................................................................................................2016.00660
..................................................................................................................................................GTTTGTGACCGACACTAACGGGTA........................................................................................................................................................2415.00550
...................................................................................................................................................TTTGTGACCGACACTAACGGGTAC.......................................................................................................................................................2414.00440
..................................................................................................................................................GTTTGTGACCGACACTAACGGGT.........................................................................................................................................................2314.00440
...................................................................................................................................................TTTGTGACCGACACTAACGGGG.........................................................................................................................................................2214.00440
...................................................................................................................................................TTTGTGACCGACACTAACGGGTTT.......................................................................................................................................................2413.00330
....................................................................................................................................................TTGTGACCGACACTAACGGGTAT.......................................................................................................................................................2313.00330
....................................................................................................................................................TTGTGACCGACACTAACGGGTAA.......................................................................................................................................................2313.00330
...................................................................................................................................................TTTGTGACCGACACTAACGGGA.........................................................................................................................................................2213.00321
...................................................................................................................................................TTTGTGACCGACACTAACGGGC.........................................................................................................................................................2213.00312
...................................................................................................................................................TTTGTGACCGACACTAACGGGTG........................................................................................................................................................2312.00220
....................................................................................................................................................TTGTGACCGACACTAACGG...........................................................................................................................................................1912.00220
...................................................................................................................................................TTTGTGACCGACACTAACGGGTATA......................................................................................................................................................2512.00220
..................................................................................................................................................GTTTGTGACCGACACTAACGGG..........................................................................................................................................................2212.00220
...................................................................................................................................................TTTGTGACCGACACTAAC.............................................................................................................................................................1812.00220
...................................................................................................................................................TTTGTGACCGACACTAACGGGTC........................................................................................................................................................2312.00220
......................................................................................................................................................................................................................CTCGTTTTTGCGATCACAAATTC.....................................................................................2312.00220
...................................................................................................................................................TTTGTGACCGACACTAACGGGTATG......................................................................................................................................................2512.00220
........................................................................................................................................................................................................................CGTTTTTGCGATCACAAATT......................................................................................2011.00101
.......................................................................................................................................................TGACCGACACTAACGGGT.........................................................................................................................................................1811.00110
........................................................................................................................................................................................................................CGTTTTTGCGATCACAAATTCT....................................................................................2211.00110
........................................................................................................................................................................................................................CGTTTTTGCGATCACAAAT.......................................................................................1911.00110
........................................................................................................................................................GACCGACACTAACGGGTA........................................................................................................................................................1811.00110
...................................................................................................................................................TTTGTGACCGACACTAACGGGTCA.......................................................................................................................................................2411.00110
......................................................................................................................................................GTGACCGACACTAACGGGTAT.......................................................................................................................................................2111.00110
...................................................................................................................................................TTTGTGACCGACACTAACGGGTCT.......................................................................................................................................................2411.00101
...................................................................................................................................................TTTGTGACCGACACTAACGGGTAACG.....................................................................................................................................................2611.00110
...................................................................................................................................................TTTGTGACCGACACTAACGGGTCTG......................................................................................................................................................2511.00110
.......................................................................................................................................................TGACCGACACTAACGGGTA........................................................................................................................................................1911.00110
......................................................................................................................................................................................................................CTCGTTTTTGCGATCACAAATC......................................................................................2211.00101
...................................................................................................................................................TTTGTGACCGACACTAACGGGTAAG......................................................................................................................................................2511.00110
....................................................................................................................................................TTGTGACCGACACTAACGGGTT........................................................................................................................................................2211.00110
..........................................................................................................................................................................GTTAAAGGGCATCCTCGC-------A--TTCTGCT.....................................................................................................................2611.00110
...................................................................................................................................................TTTGTGACCGACACTAACGGGTACCA.....................................................................................................................................................2611.00110
......................................................................................................................................................GTGACCGACACTAACGGGT.........................................................................................................................................................1911.00110
...................................................................................................................................................TTTGTGACCGACACTAACGGGTAG.......................................................................................................................................................2411.00110
...................................................................................................................................................TTTGTGACCGACACTAACGGA..........................................................................................................................................................2111.00110
......................................................................................................................................................GTGACCGACACTAACGGG..........................................................................................................................................................1811.00110
......................................................................................................................................................................................................................CTCGTTTTTGCGATCACAAATTCT....................................................................................2411.00110
....................................................................................................................................................TTGTGACCGACACTAACGGGTAC.......................................................................................................................................................2311.00110
droVir3
AGT--G--------------------------AATCC------------------------------CAA-----------------TGTCGCATCCT------------------------------GT--TTGTTGCAGTTTCGGTTTGTGACCGACACTAACGGGTAGTTGG---GGCACCTCGA---A------T-ACGCTGTT-T--TACTCGTTTTTGCGATCACAAATTCTGAAATTGCAACGAAA-AGCAACAAG---------------AAAA-----TT----------------------------TCTCASizeHit CountTotal NormTotalM027

Male-body		M028

Head		M047

Female-body		M061

Embryo		SRR060654

Ovary		SRR060655

Testis		SRR060656

Ovary		SRR060657

Testis		SRR060658

Ovary		SRR060659

Testis		SRR060660

Ovary		SRR060661

Embryo		SRR060662

Embryo		SRR060663

Embryo		SRR060664

Male-body		SRR060665

Female-body		SRR060666

Male-body		SRR060667

Female-body		SRR060668

Male-body		SRR060669

Female-body		SRR060670

Testis		SRR060671

Male-body		SRR060672

Female-body		SRR060673

Ovary		SRR060674

Ovary		SRR060675

Ovary		SRR060676

Ovary		SRR060677

Ovary		SRR060678

Testis		SRR060679

Testis		SRR060680

Testis		SRR060681

Testis		SRR060682

Embryo		SRR060683

Testis		SRR060684

Embryo		SRR060685

Embryo		SRR060686

Embryo		SRR060687

Embryo		SRR060688

Ovary		SRR060689

Testis		SRR1106712

embryo_0-2h		SRR1106713

embryo_0-2h		SRR1106714

embryo_2-4h		SRR1106715

embryo_4-6h		SRR1106716

embryo_4-6h		SRR1106717

embryo_6-8h		SRR1106718

embryo_6-8h		SRR1106719

embryo_8-10h		SRR1106720

embryo_8-10h		SRR1106721

embryo_10-12h		SRR1106722

embryo_10-12h		SRR1106723

embryo_12-14h		SRR1106724

embryo_12-14h		SRR1106725

embryo_14-16h		SRR1106726

embryo_14-16h		SRR1106727

larvae		SRR1106728

larvae		SRR1106729

mixed whole adult body		SRR1106730

embryo_16-30h		V047

Embryo		V053

Head		V116

Male-body		GSM1528803

follicle cells		SRR2096013

Ovary_Strain_9_oxidized		SRR2096014

Ovary_Strain_160_oxidized		SRR2096026

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096038

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096050

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096055

Ovary_Min_43		SRR2096056

Ovary_Min_46		SRR2096057

Ovary_Min_50		SRR2096058

Ovary_Min_98		SRR2096059

Ovary_Min_164		SRR2096060

Ovary_Min_193		SRR2096061

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096072

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096079

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096080

embryo_0-2h from 15to16 day old nondysgenic mothers		SRR2096081

embryo_0-2h from 15to16 day old nondysgenic mothers
...................................................................................................................................................TTTGTGACCGACACTAACGGGT.........................................................................................................................................................221255753.0025575311781040618134833433226470763461614400011211886273971347292205987555114072206591232501563192891194995953795159851353820104261530000000000000000013705579923811021535100050691022374178500321
...................................................................................................................................................TTTGTGACCGACACTAACGGGTA........................................................................................................................................................231109911.001099111721210160573642011962129600092476435443710561409145447606820138442619497203214808041372078839203103000775000000000011000000231253461660270378000182227921102200000
...................................................................................................................................................TTTGTGACCGACACTAACGGG..........................................................................................................................................................21125565.002556520013776456011041654473000107188575513886354851361043151913319452721641742751289601011000014600000000000000000120011465301710500013101327581000000
...................................................................................................................................................TTTGTGACCGACACTAACGGGTAA.......................................................................................................................................................24114391.00143913252300023115071000181093973919117699926913432290067108691464203890033000007100000000000000000000782110113600000010000000
...................................................................................................................................................TTTGTGACCGACACTAACGGGTAT.......................................................................................................................................................24114088.001408833919303660160200000120811228512018753865162108719530145221865549530510800810010212600000000000000000100796330285900000134000000
...................................................................................................................................................TTTGTGACCGACACTAACGGGA.........................................................................................................................................................2213513.003513141731610083052261200074398810270454813316311000661002312206300000650000000000000000010016718800000001001000000
...................................................................................................................................................TTTGTGACCGACACTAACGGGC.........................................................................................................................................................2213189.00318910912713210210150152000302015301611372947010001069490800000370000000000000000000013462100000000001000000
...................................................................................................................................................TTTGTGACCGACACTAACGGGTT........................................................................................................................................................2312804.00280491128800200204000021116719634515612521276355131241131125117207000001700000000000000000400212304700000012100000
....................................................................................................................................................TTGTGACCGACACTAACGGGT.........................................................................................................................................................2112270.00227011616980012016052000332514282115153646002303723104704000001900000000000000000000129900300000100000000
...................................................................................................................................................TTTGTGACCGACACTAACGG...........................................................................................................................................................2011855.0018553731663710120110141000232462103330202213820550114080000016000000000000000001001871900500001107300000
....................................................................................................................................................TTGTGACCGACACTAACGGGTA........................................................................................................................................................2211783.001783011517003020000002417132612140163601020291963202000003000000000000000000007100000000000000000
...................................................................................................................................................TTTGTGACCGACACTAACGGGG.........................................................................................................................................................2211555.0015559371443006014091000242113188471928100003124802000005000000000000000005004202203200001555300000
...................................................................................................................................................TTTGTGACCGACACTAACG............................................................................................................................................................1911332.0013321441240039031400002237274727215229401001210519843148032000002500000000000000000000251200100020001200000
....................................................................................................................................................TTGTGACCGACACTAACGGG..........................................................................................................................................................201661.00661016210000000000024240006300000334501000000000000000000000000002000000000000000000
...................................................................................................................................................TTTGTGACCGACACTAACGGGTC........................................................................................................................................................231644.00644121417600901000000313132813292037762111391141804000001400000000000000000100692020000033412000000
...................................................................................................................................................TTTGTGACCGACACTAACGGGTTT.......................................................................................................................................................241481.00481181500120102000035312384152263666000101312729060000140000000000000000000049100100000000000000
...................................................................................................................................................TTTGTGACCGACACTAACGGGTAAA......................................................................................................................................................251385.003850140000001000050331750243003166000101510521000000000000000000000000000026000000000000000000
...................................................................................................................................................TTTGTGACCGACACTAACGGGTAC.......................................................................................................................................................241369.003691154001010000002722125416302294401032146519000000040000000000000000000018000100000000200000
...................................................................................................................................................TTTGTGACCGACACTAACGGGTAG.......................................................................................................................................................241218.00218310170010000000013910161184123500000149512000000010000000000000000000026100000000001000000
.....................................................................................................................................................TGTGACCGACACTAACGGGT.........................................................................................................................................................201195.001950111500000030000234343086001005019000000010000000000000000000025100000000000000000
...................................................................................................................................................TTTGTGACCGACACTAACGGT..........................................................................................................................................................211140.001400215101030100004455912790100072010080000020000000000000000000032800100000000000000
......................................................................................................................................................................................................................CTCGTTTTTGCGATCACAAATTCT....................................................................................241135.00135002900000000000326410144071600020230300000000000000000000000000002000000000000100000
...................................................................................................................................................TTTGTGACCGACACTAACGGA..........................................................................................................................................................211124.00124031700000000000572463249000002417020000000000000000000000000028000000000000000000
.....................................................................................................................................................TGTGACCGACACTAACGGGTA........................................................................................................................................................211110.0011001830000000000010341013400000110300000000000000000000000000004000000000000000000
......................................................................................................................................................................................................................CTCGTTTTTGCGATCACAAATTC.....................................................................................23199.0099053500200000000105584203800000001100000000000000000000000000001002200000030200000
......................................................................................................................................................................................................................CTCGTTTTTGCGATCACAAATT......................................................................................22169.0069001000000000000535133205301000120100000001000000000000000000007102400000000000000
...................................................................................................................................................TTTGTGACCGACACTAACGGGTG........................................................................................................................................................23169.00690131000301000000222402035000002014000000030000000000000000000012000000000000000000
...................................................................................................................................................TTTGTGACCGACACTAACGGGTCT.......................................................................................................................................................24168.0068007001010000003219192114000000001000000030000000000000000000013000000000000000000
...................................................................................................................................................TTTGTGACCGACACTAACGGGTATC......................................................................................................................................................25164.006400200000000000672236061600000201700000000000000000000000000001101000010000000000
...................................................................................................................................................TTTGTGACCGACACTAACGGCC.........................................................................................................................................................22162.0062000000000000000000001301000000000000000010000000000000000000047000000000000000000
....................................................................................................................................................TTGTGACCGACACTAACGG...........................................................................................................................................................19155.005500530000000000000000000000000001000000000000000000000000000000100000000000000000
...................................................................................................................................................TTTGTGACCGACACTAAC.............................................................................................................................................................18152.005201100000000000034392306300000130100000000000000000000000000001000200000000000000
....................................................................................................................................................TTGTGACCGACACTAACGGGTAA.......................................................................................................................................................23149.004900140010000000052123105201000801300000000000000000000000000000000000000000000000
.....................................................................................................................................................TGTGACCGACACTAACGGG..........................................................................................................................................................19149.004900440000000000000101000100000000100000000000000000000000000001000000000000000000
.................................................................................................................................................GGTTTGTGACCGACACTAACGGG..........................................................................................................................................................23149.004901420000000000000000000400000010000000000000000000000000000001000000000000000000
...................................................................................................................................................TTTGTGACCGACACTAACGGTC.........................................................................................................................................................22146.004600000000000000000000700000000000000000000000000000000000000039000000000000000000
....................................................................................................................................................TTGTGACCGACACTAACGGGTAT.......................................................................................................................................................23141.004100250000000000011311203200000000000000002000000000000000000000000000000000000000
...................................................................................................................................................TTTGTGACCGACACTAACGT...........................................................................................................................................................20138.003814000301030000001100200000001101060000010000000000000000000011100000000000000000
...................................................................................................................................................TTTGTGACCGACACTAACGGTA.........................................................................................................................................................22136.003600100000000000201100105300000000400000000000000000000000000009000000000000000000
......................................................................................................................................................GTGACCGACACTAACGGGT.........................................................................................................................................................19135.003500230000000000002300000100000220000000002000000000000000000000000000000000000000
..................................................................................................................................................GTTTGTGACCGACACTAACGGGT.........................................................................................................................................................23134.003400300000000000001000000200000010000000000000000000000000000000000000000000000000
...................................................................................................................................................TTTGTGACCGACACTAACGGGTTA.......................................................................................................................................................24134.00340020000100000052140102400000002400000000000000000000000000006000000000000000000
...................................................................................................................................................TTTGTGACCGACACTAACGGAC.........................................................................................................................................................22132.003232500000000000000000010100000000000000000000000000000000000002000000000000000000
...................................................................................................................................................TTTGTGACCGACACTAACGGGTTC.......................................................................................................................................................24132.00320080000000000022110103900000110100000001000000000000000000001000000000000000000
....................................................................................................................................................TTGTGACCGACACTAACGGGA.........................................................................................................................................................21130.003000250000000000000000010000000000100000000000000000000000000003000000000000000000
..................................................................................................................................................GTTTGTGACCGACACTAACGGGTA........................................................................................................................................................24129.002900250000000000010000000300000000000000000000000000000000000000000000000000000000
...................................................................................................................................................TTTGTGACCGACACTAACGGC..........................................................................................................................................................21128.002803100000100000011000222000001001000000000000000000000000000011200000000000000000
...................................................................................................................................................TTTGTGACCGACACTAACGGGTCA.......................................................................................................................................................24127.00270030000000000033031414300000000000000000000000000000000000002000000000000000000
...................................................................................................................................................TTTGTGACCGACACTAACGGGTATA......................................................................................................................................................25127.00270110000000000013060300400000201400000000000000000000000000001000000000000000000
...................................................................................................................................................TTTGTGACCGACACTAACGGTG.........................................................................................................................................................22126.002600000000000000090000100000000000000000000000000000000000000016000000000000000000
...................................................................................................................................................TTTGTGACCGACACTAACGGCG.........................................................................................................................................................22124.002400000001000000030000400000000000000000000000000000000000000016000000000000000000
....................................................................................................................................................TTGTGACCGACACTAACGGGTC........................................................................................................................................................22124.002400220000000000000000000200000000000000000000000000000000000000000000000000000000
...................................................................................................................................................TTTGTGACCGACACTAACGGAA.........................................................................................................................................................22124.002402100101000000110100410000000000000000000000000000000000000011000000000000000000
......................................................................................................................................................GTGACCGACACTAACGGGTA........................................................................................................................................................20123.002300190000000000000000001000000210000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................TCGTTTTTGCGATCACAAATTC.....................................................................................22120.002002120000000000011000200000000200000000000000000000000000000000000000000000000000
...................................................................................................................................................TTTGTGACCGACACTAACGGGTATCC.....................................................................................................................................................26120.00200090000000000003001101400000001000000000000000000000000000000000000000000000000
.......................................................................................................................................................TGACCGACACTAACGGGT.........................................................................................................................................................18119.00190090000000000000200001000000230200000000000000000000000000000000000000000000000
...................................................................................................................................................TTTGTGACCGACACTAACGGGTGT.......................................................................................................................................................24118.00180300000000000004101010200000000000000000000000000000000000005100000000000000000
....................................................................................................................................................TTGTGACCGACACTAACG............................................................................................................................................................18118.001800140000000000000000011000000110000000000000000000000000000000000000000000000000
...................................................................................................................................................TTTGTGACCGACACTAACGGGCT........................................................................................................................................................23117.001700000000000000100000001000000000000000000000000000000000000015000000000000000000
.......................................................................................................................................................................................................................TCGTTTTTGCGATCACAAATTCT....................................................................................23117.00170050000000000001000001100000231100000000000000000000000000000200000000000000000
...................................................................................................................................................TTTGTGACCGACACTAACGGCA.........................................................................................................................................................22116.00160020000000000000000050000000000000000000000000000000000000009000000000000000000
.......................................................................................................................................................................................................................TCGTTTTTGCGATCACAAATT......................................................................................21115.00150040000000000001100000000000120200000001000000000000000000003000000000000000000
..................................................................................................................................................GTTTGTGACCGACACTAACGGG..........................................................................................................................................................22115.001501140000000000000000000000000000000000000000000000000000000000000000000000000000
droMoj3
TGA--AT----------C-------------------------------------------------TGT-TGTCAAGTG------------TATCCT----------------------------------GTGTTGCAGTTTCGGTTTGTGACCGACACTAACGGGTAGTTGA--GGCATC-TCGT---A------T-TCGCTGTT-TTATACTCGTTTTTGCGATCACAAATTCTGAAATTGCAACGAAA-CGCAACGAAA----------------------------------------------------------SizeHit CountTotal NormTotalM046

Female-body		V041

Embryo		V049

Head		V056

Head		M060

Embryo		V110

Male-body
...................................................................................................................................................TTTGTGACCGACACTAACGGGT.........................................................................................................................................................221148678.00148678220844551666675214671
...................................................................................................................................................TTTGTGACCGACACTAACGGGTA........................................................................................................................................................23122904.0022904163010275236010250
...................................................................................................................................................TTTGTGACCGACACTAACGGG..........................................................................................................................................................2115428.005428353508341029030
...................................................................................................................................................TTTGTGACCGACACTAACGGGA.........................................................................................................................................................2212633.002633146010101411165
....................................................................................................................................................TTGTGACCGACACTAACGGGT.........................................................................................................................................................2112619.00261919610283344031
....................................................................................................................................................TTGTGACCGACACTAACGGGTA........................................................................................................................................................2211444.0014441423071400
...................................................................................................................................................TTTGTGACCGACACTAACGGGC.........................................................................................................................................................2211423.001423420404966110
...................................................................................................................................................TTTGTGACCGACACTAACGGGTAT.......................................................................................................................................................2411275.0012753240390527034
...................................................................................................................................................TTTGTGACCGACACTAACGGGTAA.......................................................................................................................................................2411131.0011312190382519011
...................................................................................................................................................TTTGTGACCGACACTAACGG...........................................................................................................................................................201869.008693860182289012
...................................................................................................................................................TTTGTGACCGACACTAACGGGG.........................................................................................................................................................221580.0058037028824906
...................................................................................................................................................TTTGTGACCGACACTAACG............................................................................................................................................................191453.0045384017818605
...................................................................................................................................................TTTGTGACCGACACTAACGGGTT........................................................................................................................................................231340.00340112110711505
....................................................................................................................................................TTGTGACCGACACTAACGGG..........................................................................................................................................................201337.0033733302200
...................................................................................................................................................TTTGTGACCGACACTAACGGGTC........................................................................................................................................................231209.00209950535704
.....................................................................................................................................................TGTGACCGACACTAACGGGT.........................................................................................................................................................201156.001561100172810
...................................................................................................................................................TTTGTGACCGACACTAACGGT..........................................................................................................................................................211121.001212803744012
...................................................................................................................................................TTTGTGACCGACACTAACGGGTAC.......................................................................................................................................................241101.001018308901
...................................................................................................................................................TTTGTGACCGACACTAACGGGTTT.......................................................................................................................................................24179.0079170322802
.....................................................................................................................................................TGTGACCGACACTAACGGGTA........................................................................................................................................................21179.00797700200
...................................................................................................................................................TTTGTGACCGACACTAACGGGTAG.......................................................................................................................................................24158.0058200102602
...................................................................................................................................................TTTGTGACCGACACTAACGT...........................................................................................................................................................20154.005410193103
...................................................................................................................................................TTTGTGACCGACACTAACGGGTATC......................................................................................................................................................25142.004225031103
....................................................................................................................................................TTGTGACCGACACTAACGG...........................................................................................................................................................19142.00424200000
..................................................................................................................................................GTTTGTGACCGACACTAACGGGT.........................................................................................................................................................23138.00383800000
...................................................................................................................................................TTTGTGACCGACACTAACGGA..........................................................................................................................................................21135.003510161800
...................................................................................................................................................TTTGTGACCGACACTAACGGTC.........................................................................................................................................................22131.00310042700
...................................................................................................................................................TTTGTGACCGACACTAACGGGTAAA......................................................................................................................................................25131.00315091700
....................................................................................................................................................TTGTGACCGACACTAACGGGTAT.......................................................................................................................................................23129.00292702000
.......................................................................................................................................................................................................................TCGTTTTTGCGATCACAAATTC.....................................................................................22125.00251901401
...................................................................................................................................................TTTGTGACCGACACTAACGGTA.........................................................................................................................................................22124.00241071600
...................................................................................................................................................TTTGTGACCGACACTAACGGTG.........................................................................................................................................................22124.00240071700
......................................................................................................................................................................................................................CTCGTTTTTGCGATCACAAATTCT....................................................................................24120.00201104500
......................................................................................................................................................GTGACCGACACTAACGGGT.........................................................................................................................................................19119.00191503100
.......................................................................................................................................................................................................................TCGTTTTTGCGATCACAAATT......................................................................................21119.00191003501
....................................................................................................................................................TTGTGACCGACACTAACGGGTAA.......................................................................................................................................................23119.00191800100
...................................................................................................................................................TTTGTGACCGACACTAACGGGTCT.......................................................................................................................................................24118.00182051001
..................................................................................................................................................GTTTGTGACCGACACTAACGGGTA........................................................................................................................................................24118.00181800000
...................................................................................................................................................TTTGTGACCGACACTAACGGGTG........................................................................................................................................................23118.00181105200
....................................................................................................................................................TTGTGACCGACACTAACGGGTC........................................................................................................................................................22116.00161501000
....................................................................................................................................................TTGTGACCGACACTAACGGGA.........................................................................................................................................................21116.0016805300
......................................................................................................................................................GTGACCGACACTAACGGGTA........................................................................................................................................................20116.00161402000
...................................................................................................................................................TTTGTGACCGACACTAACGGC..........................................................................................................................................................21115.0015307500
...................................................................................................................................................TTTGTGACCGACACTAACGCTC.........................................................................................................................................................22113.0013009400
...................................................................................................................................................TTTGTGACCGACACTAACGGGTTA.......................................................................................................................................................24112.0012107400
...................................................................................................................................................TTTGTGACCGACACTAACGGGTGT.......................................................................................................................................................24112.0012008202
...................................................................................................................................................TTTGTGACCGACACTAACGGGCT........................................................................................................................................................23112.0012007500
...................................................................................................................................................TTTGTGACCGACACTAACGGGTCA.......................................................................................................................................................24112.0012108300
....................................................................................................................................................TTGTGACCGACACTAACGGGTT........................................................................................................................................................22111.0011902000
....................................................................................................................................................TTGTGACCGACACTAACGGGTAC.......................................................................................................................................................23111.00111001000
....................................................................................................................................................TTGTGACCGACACTAACGGGC.........................................................................................................................................................21111.0011501500
...................................................................................................................................................TTTGTGACCGACACTAACGGGGC........................................................................................................................................................23110.0010106300
......................................................................................................................................................................................................................CTCGTTTTTGCGATCACAAATT......................................................................................22110.0010701200
......................................................................................................................................................................................................................CTCGTTTTTGCGATCACAAATTC.....................................................................................23110.0010701200
...................................................................................................................................................TTTGTGACCGACACTAACGGCC.........................................................................................................................................................2218.008003500
droWil2
TGT--TGT--------------------------TT--------------------------------TGTGATTA----TTTT-----TAATATCC------------------------------------TGTTGCAGTTTCATTTTGTGACCGACACTAACGGGTAGTAAC-GGGTTAAC-----AAAGTCGTT--TTTCTGGCCTTTTACTCGTTTTTGCGATCACAAATTCTGAAATTGCAGCAAAAGATCAACGTATACAACAAACACATAAAA---------------------------------TGATAAGASizeHit CountTotal NormTotalM020

Head		M045

Female-body		V117

Male-body		V118

Embryo		V119

Head
...................................................................................................................................................TTTGTGACCGACACTAACGGGT.........................................................................................................................................................221100531.00100531288274170101522966290
...................................................................................................................................................TTTGTGACCGACACTAACGGGTA........................................................................................................................................................23113118.00131183877370759695406
...................................................................................................................................................TTTGTGACCGACACTAACGGG..........................................................................................................................................................2116236.00623639831253152983
...................................................................................................................................................TTTGTGACCGACACTAACGGGC.........................................................................................................................................................2213164.0031642448450707
...................................................................................................................................................TTTGTGACCGACACTAACGG...........................................................................................................................................................2011727.00172774813441840
...................................................................................................................................................TTTGTGACCGACACTAACGGGG.........................................................................................................................................................2211556.0015561296912248
...................................................................................................................................................TTTGTGACCGACACTAACGGGA.........................................................................................................................................................2211277.001277188291221046
...................................................................................................................................................TTTGTGACCGACACTAACGGGTAA.......................................................................................................................................................241673.00673355352578
....................................................................................................................................................TTGTGACCGACACTAACGGGT.........................................................................................................................................................211591.005912834031219
...................................................................................................................................................TTTGTGACCGACACTAACG............................................................................................................................................................191551.005511565910335
...................................................................................................................................................TTTGTGACCGACACTAACGGGTAT.......................................................................................................................................................241384.00384706946235
....................................................................................................................................................TTGTGACCGACACTAACGGGTA........................................................................................................................................................221366.0036623510013
...................................................................................................................................................TTTGTGACCGACACTAACGGGTC........................................................................................................................................................231249.00249140360073
...................................................................................................................................................TTTGTGACCGACACTAACGGT..........................................................................................................................................................211148.0014812321130
...................................................................................................................................................TTTGTGACCGACACTAACGGGTT........................................................................................................................................................231147.00147100113132
....................................................................................................................................................TTGTGACCGACACTAACGGG..........................................................................................................................................................20186.0086877001
.....................................................................................................................................................TGTGACCGACACTAACGGGT.........................................................................................................................................................20180.00802292047
...................................................................................................................................................TTTGTGACCGACACTAACGGGTAG.......................................................................................................................................................24174.00744250027
...................................................................................................................................................TTTGTGACCGACACTAACGGGTAC.......................................................................................................................................................24144.004413210010
......................................................................................................................................................................................................................CTCGTTTTTGCGATCACAAATT......................................................................................22138.0038430031
...................................................................................................................................................TTTGTGACCGACACTAACGGA..........................................................................................................................................................21131.00311310017
......................................................................................................................................................................................................................CTCGTTTTTGCGATCACAAATTC.....................................................................................23131.0031234004
...................................................................................................................................................TTTGTGACCGACACTAACGGAC.........................................................................................................................................................22130.0030300000
...................................................................................................................................................TTTGTGACCGACACTAACGGGTG........................................................................................................................................................23129.0029202007
...................................................................................................................................................TTTGTGACCGACACTAACGGGTAAA......................................................................................................................................................25126.0026120023
......................................................................................................................................................................................................................CTCGTTTTTGCGATCACAAATTCT....................................................................................24120.0020124004
.....................................................................................................................................................TGTGACCGACACTAACGGGTA........................................................................................................................................................21120.0020018002
...................................................................................................................................................TTTGTGACCGACACTAACGT...........................................................................................................................................................20119.0019700012
....................................................................................................................................................TTGTGACCGACACTAACGG...........................................................................................................................................................19117.0017012005
...................................................................................................................................................TTTGTGACCGACACTAAC.............................................................................................................................................................18116.0016150001
...................................................................................................................................................TTTGTGACCGACACTAACGGGTTT.......................................................................................................................................................24114.0014120011
.......................................................................................................................................................TGACCGACACTAACGGGT.........................................................................................................................................................18113.001344005
......................................................................................................................................................GTGACCGACACTAACGGGT.........................................................................................................................................................19112.001226004
...................................................................................................................................................TTTGTGACCGACACTAACGGGTCA.......................................................................................................................................................24111.001102009
....................................................................................................................................................TTGTGACCGACACTAACGGGTAT.......................................................................................................................................................23111.001109002
..................................................................................................................................................TTTTGTGACCGACACTAACGGGT.........................................................................................................................................................23111.001108003
....................................................................................................................................................TTGTGACCGACACTAACGGGA.........................................................................................................................................................21110.001004006
.................................................................................................................................................ATTTTGTGACCGACACTAACGGG..........................................................................................................................................................23110.001046000
...................................................................................................................................................TTTGTGACCGACACTAACGGGTGT.......................................................................................................................................................2418.00810007
.....................................................................................................................................................TGTGACCGACACTAACGGG..........................................................................................................................................................1918.00808000
...................................................................................................................................................TTTGTGACCGACACTAACGGTA.........................................................................................................................................................2218.00802006
....................................................................................................................................................TTGTGACCGACACTAACG............................................................................................................................................................1817.00706001
...................................................................................................................................................TTTGTGACCGACACTAACGGGTACA......................................................................................................................................................2517.00711005
....................................................................................................................................................TTGTGACCGACACTAACGGGTAA.......................................................................................................................................................2316.00604002
......................................................................................................................................................GTGACCGACACTAACGGGTA........................................................................................................................................................2016.00606000
...................................................................................................................................................TTTGTGACCGACACTAACGGGTAGT......................................................................................................................................................2516.00602103
...................................................................................................................................................TTTGTGACCGACACTAACGGGTCT.......................................................................................................................................................2416.00602004
.................................................................................................................................................ATTTTGTGACCGACACTAACGGGT.........................................................................................................................................................2415.00531001
...................................................................................................................................................TTTGTGACCGACACTAACGGGTCC.......................................................................................................................................................2415.00520003
...................................................................................................................................................TTTGTGACCGACACTAACGGAA.........................................................................................................................................................2215.00500005
.......................................................................................................................................................................................................................TCGTTTTTGCGATCACAAATT......................................................................................2115.00502003
....................................................................................................................................................TTGTGACCGACACTAACGGGC.........................................................................................................................................................2115.00550000
......................................................................................................................................................................................AC-----AAAGTCGTT--TTTCTGGCCT................................................................................................................2115.00550000
.......................................................................................................................................................................................C-----AAAGTCGTT--TTTCTGGCC.................................................................................................................1915.00550000
...................................................................................................................................................TTTGTGACCGACACTAACGGGTATA......................................................................................................................................................2514.00421001
...................................................................................................................................................TTTGTGACCGACACTAACCC...........................................................................................................................................................2014.00430001
...................................................................................................................................................TTTGTGACCGACACTAACGGC..........................................................................................................................................................2114.00431000
....................................................................................................................................................TTGTGACCGACACTAACGGGTC........................................................................................................................................................2214.00403001
.......................................................................................................................................................................................C-----AAAGTCGTT--TTTCTGGCCT................................................................................................................2014.00440000
.................................................................................................................................................ATTTTGTGACCGACACTAACG............................................................................................................................................................2113.00311001
..................................................................................................................................................TTTTGTGACCGACACTAACGGGTA........................................................................................................................................................2413.00303000
.......................................................................................................................................................................................................................TCGTTTTTGCGATCACAAATTCT....................................................................................2313.00302001
...................................................................................................................................................TTTGTGACCGACACTAACGTA..........................................................................................................................................................2113.00300003
...................................................................................................................................................TTTGTGACCGACACTAACGGGCC........................................................................................................................................................2313.00310002
...................................................................................................................................................TTTGTGACCGACACTAACGA...........................................................................................................................................................2013.00300003
........................................................................................................................................................................................................................CGTTTTTGCGATCACAAATTCT....................................................................................2213.00311001
...................................................................................................................................................TTTGTGACCGACACTAACGGGTATC......................................................................................................................................................2513.00300003
dp5
TGG--C--------------------------ATTCCCCTGGGACC-------TGGGACCTGGCACCTGG-----------------AACCTGGTCCC----------------------------------GTGCTGCAGTTTCATTTTGTGACCGACACTAACGGGTAATGGC-TGGCC---------------------GCAGGA-C--TACTCGTTTTTGCGATCACA-ATACTGAAATTGCAGCAACG-AGCAGCGAAACTGTGGAA--------------------------------------------------SizeHit CountTotal NormTotalM022

Male-body		M040

Female-body		M059

Embryo		M062

Head		V043

Embryo		V051

Head		V112

Male-body		SRR902010

Ovary		SRR902011

Testis		SRR902012

CNS imaginal disc
...................................................................................................................................................TTTGTGACCGACACTAACGGGT.........................................................................................................................................................22176186.00761861852138829338841522329764400
...................................................................................................................................................TTTGTGACCGACACTAACGGGTA........................................................................................................................................................23120543.00205432211860423111585613013571
...................................................................................................................................................TTTGTGACCGACACTAACGGG..........................................................................................................................................................2116897.0068971746860108909374001280
...................................................................................................................................................TTTGTGACCGACACTAACGGGC.........................................................................................................................................................2212550.00255086201819064117030
....................................................................................................................................................TTGTGACCGACACTAACGGGT.........................................................................................................................................................2112399.002399119340125029933070
...................................................................................................................................................TTTGTGACCGACACTAACGG...........................................................................................................................................................2011665.001665792713300354190270
....................................................................................................................................................TTGTGACCGACACTAACGGGTA........................................................................................................................................................2211176.001176011000260443030
...................................................................................................................................................TTTGTGACCGACACTAACG............................................................................................................................................................1911123.001123048509105420050
...................................................................................................................................................TTTGTGACCGACACTAACGGGTAA.......................................................................................................................................................241860.0086001300140685150160
...................................................................................................................................................TTTGTGACCGACACTAACGGGA.........................................................................................................................................................221645.006451104055046220030
...................................................................................................................................................TTTGTGACCGACACTAACGGGTT........................................................................................................................................................231581.005815171019901981070
...................................................................................................................................................TTTGTGACCGACACTAACGGGTAT.......................................................................................................................................................241493.0049301500320268181240
....................................................................................................................................................TTGTGACCGACACTAACGGG..........................................................................................................................................................201482.00482047109020000
...................................................................................................................................................TTTGTGACCGACACTAACGGGG.........................................................................................................................................................221233.002330540811661030
......................................................................................................................................................................................................................CTCGTTTTTGCGATCACA-ATACT....................................................................................231232.0023201340530422010
...................................................................................................................................................TTTGTGACCGACACTAACGGT..........................................................................................................................................................211165.001650780480354000
.....................................................................................................................................................TGTGACCGACACTAACGGGT.........................................................................................................................................................201142.001421119080103010
...................................................................................................................................................TTTGTGACCGACACTAACGGGTC........................................................................................................................................................231107.001072280160573010
..........................................................................................................................................................................ATGGC-TGGCC---------------------GCAGGA-C--TA............................................................................................................191103.0010319801012000
...................................................................................................................................................TTTGTGACCGACACTAACGGGTAC.......................................................................................................................................................241102.00102070021080030
....................................................................................................................................................TTGTGACCGACACTAACGG...........................................................................................................................................................19188.008808105020000
...................................................................................................................................................TTTGTGACCGACACTAACGT...........................................................................................................................................................20185.0085110080579000
.....................................................................................................................................................TGTGACCGACACTAACGGGTA........................................................................................................................................................21181.008107701030000
...................................................................................................................................................TTTGTGACCGACACTAACGGGTTT.......................................................................................................................................................24149.00490180100200010
......................................................................................................................................................................................................................CTCGTTTTTGCGATCACA-ATAC.....................................................................................22143.0043029011030000
.......................................................................................................................................................................................................................TCGTTTTTGCGATCACA-ATACT....................................................................................22142.004203206040000
..................................................................................................................................................TTTTGTGACCGACACTAACGGGT.........................................................................................................................................................23140.004002906050000
....................................................................................................................................................TTGTGACCGACACTAACG............................................................................................................................................................18138.003803800000000
...................................................................................................................................................TTTGTGACCGACACTAACGGGTAAA......................................................................................................................................................25125.002504000200010
......................................................................................................................................................................................................................CTCGTTTTTGCGATCACA-ATA......................................................................................21124.002401601070000
.....................................................................................................................................................TGTGACCGACACTAACGGG..........................................................................................................................................................19124.002402301000000
...................................................................................................................................................TTTGTGACCGACACTAACGGGTG........................................................................................................................................................23123.002311401070000
....................................................................................................................................................TTGTGACCGACACTAACGGGTT........................................................................................................................................................22123.002301704000020
....................................................................................................................................................TTGTGACCGACACTAACGGGC.........................................................................................................................................................21123.002303020000000
...................................................................................................................................................TTTGTGACCGACACTAACGGGTAG.......................................................................................................................................................24122.00220906070000
....................................................................................................................................................TTGTGACCGACACTAACGGGTAA.......................................................................................................................................................23122.002201800040000
..................................................................................................................................................TTTTGTGACCGACACTAACGGGTA........................................................................................................................................................24121.002102001000000
......................................................................................................................................................GTGACCGACACTAACGGGT.........................................................................................................................................................19121.002101604010000
...................................................................................................................................................TTTGTGACCGACACTAACGGAC.........................................................................................................................................................22120.002000019010000
...................................................................................................................................................TTTGTGACCGACACTAACGGA..........................................................................................................................................................21119.001903020140000
....................................................................................................................................................TTGTGACCGACACTAACGGGTAT.......................................................................................................................................................23118.001801601010000
...................................................................................................................................................TTTGTGACCGACACTAACGGC..........................................................................................................................................................21117.001701010060000
..........................................................................................................................................................................ATGGC-TGGCC---------------------GCAGGA-C--T.............................................................................................................18115.001511202000000
......................................................................................................................................................................................................................CTCGTTTTTGCGATCACA-ATACC....................................................................................23115.001501013010000
....................................................................................................................................................TTGTGACCGACACTAACGGGA.........................................................................................................................................................21114.001401300010000
...................................................................................................................................................TTTGTGACCGACACTAAC.............................................................................................................................................................18113.00130606010000
...................................................................................................................................................TTTGTGACCGACACTAACGGTC.........................................................................................................................................................22111.00110003080000
......................................................................................................................................................GTGACCGACACTAACGGGTA........................................................................................................................................................20111.001101100000000
...........................................................................................................................................................................TGGC-TGGCC---------------------GCAGGA-C--TA............................................................................................................18110.001001000000000
.......................................................................................................................................................................................................................TCGTTTTTGCGATCACA-ATAC.....................................................................................2119.0090801000000
......................................................................................................................................................GTGACCGACACTAACGGG..........................................................................................................................................................1818.0080701000000
...................................................................................................................................................TTTGTGACCGACACTAACGGTG.........................................................................................................................................................2218.0080000080000
....................................................................................................................................................TTGTGACCGACACTAACGGT..........................................................................................................................................................2017.0070700000000
....................................................................................................................................................TTGTGACCGACACTAACGGGTAC.......................................................................................................................................................2317.0070700000000
...................................................................................................................................................TTTGTGACCGACACTAACGGCC.........................................................................................................................................................2217.0070001060000
..................................................................................................................................................TTTTGTGACCGACACTAACGGG..........................................................................................................................................................2217.0070700000000
...................................................................................................................................................TTTGTGACCGACACTAACGGTA.........................................................................................................................................................2216.0060003030000
...................................................................................................................................................TTTGTGACCGACACTAACGGGCT........................................................................................................................................................2316.0060000060000
....................................................................................................................................................TTGTGACCGACACTAACGGGG.........................................................................................................................................................2116.0060401010000
...................................................................................................................................................TTTGTGACCGACACTAACGGCA.........................................................................................................................................................2215.0050100040000
.......................................................................................................................................................TGACCGACACTAACGGGT.........................................................................................................................................................1815.0050302000000
...................................................................................................................................................TTTGTGACCGACACTAACT............................................................................................................................................................1915.0050300020000
.......................................................................................................................................................TGACCGACACTAACGGGTA........................................................................................................................................................1915.0050400010000
..........................................................................................................................................................................ATGGC-TGGCC---------------------GCAGGA-C--TT............................................................................................................1914.0040300010000
droPer2
GGT--GGC------------------------ATTCCCCTGGGACCTGGCACCTGGGACCTGGCACCTGG-----------------GACCTGGTCCC----------------------------------GTGCTGCAGTTTCATTTTGTGACCGACACTAACGGGTAATGGC-TGGCC---------------------GCAGGA-C--TACTCGTTTTTGCGATCACA-ATACTGAAATTGCAGCAACG-AGCAGCGAAACTGTGGAA--------------------------------------------------SizeHit CountTotal NormTotalM021

Embryo		M042

Female-body		V042

Embryo		V050

Head		V057

Head		V111

Male-body
...................................................................................................................................................TTTGTGACCGACACTAACGGGT.........................................................................................................................................................221103647.00103647286610244995506391373
...................................................................................................................................................TTTGTGACCGACACTAACGGGTA........................................................................................................................................................23117238.00172381556017636396575
...................................................................................................................................................TTTGTGACCGACACTAACGGG..........................................................................................................................................................2113448.00344881576010038556
...................................................................................................................................................TTTGTGACCGACACTAACGGGC.........................................................................................................................................................2212054.002054316069113368
...................................................................................................................................................TTTGTGACCGACACTAACGGGTAA.......................................................................................................................................................2411587.00158706809855268
...................................................................................................................................................TTTGTGACCGACACTAACGGGA.........................................................................................................................................................2211218.001218022050667416
....................................................................................................................................................TTGTGACCGACACTAACGGGT.........................................................................................................................................................211924.00924055311731889
...................................................................................................................................................TTTGTGACCGACACTAACGGGTAT.......................................................................................................................................................241920.0092008304224096
...................................................................................................................................................TTTGTGACCGACACTAACGG...........................................................................................................................................................201707.00707024502382204
...................................................................................................................................................TTTGTGACCGACACTAACG............................................................................................................................................................191696.0069609903072900
....................................................................................................................................................TTGTGACCGACACTAACGGGTA........................................................................................................................................................221539.005390491031170
...................................................................................................................................................TTTGTGACCGACACTAACGGGG.........................................................................................................................................................221462.0046212801093213
...................................................................................................................................................TTTGTGACCGACACTAACGGGTT........................................................................................................................................................231329.0032905201521232
...................................................................................................................................................TTTGTGACCGACACTAACGGGTC........................................................................................................................................................231128.0012806043790
....................................................................................................................................................TTGTGACCGACACTAACGGG..........................................................................................................................................................201120.0012001190010
......................................................................................................................................................................................................................CTCGTTTTTGCGATCACA-ATACT....................................................................................231115.00115048021451
...................................................................................................................................................TTTGTGACCGACACTAACGGT..........................................................................................................................................................21197.0097021036400
...................................................................................................................................................TTTGTGACCGACACTAACGGGTAC.......................................................................................................................................................24192.0092039029240
...................................................................................................................................................TTTGTGACCGACACTAACGT...........................................................................................................................................................20180.008001019591
.....................................................................................................................................................TGTGACCGACACTAACGGGT.........................................................................................................................................................20179.0079036027160
...................................................................................................................................................TTTGTGACCGACACTAACGGGTTT.......................................................................................................................................................24163.006304024350
...................................................................................................................................................TTTGTGACCGACACTAACGGTC.........................................................................................................................................................22137.00370009280
.....................................................................................................................................................TGTGACCGACACTAACGGGTA........................................................................................................................................................21132.00320290120
...................................................................................................................................................TTTGTGACCGACACTAACGGGTAAA......................................................................................................................................................25128.002802013121
......................................................................................................................................................................................................................CTCGTTTTTGCGATCACA-ATAC.....................................................................................22125.00250200140
....................................................................................................................................................TTGTGACCGACACTAACGG...........................................................................................................................................................19123.00230210200
...................................................................................................................................................TTTGTGACCGACACTAACGGGTG........................................................................................................................................................23120.00200001460
...................................................................................................................................................TTTGTGACCGACACTAACGGCC.........................................................................................................................................................22120.00200005150
.......................................................................................................................................................................................................................TCGTTTTTGCGATCACA-ATACT....................................................................................22119.00190120340
...................................................................................................................................................TTTGTGACCGACACTAACGGGCT........................................................................................................................................................23117.00170001070
...................................................................................................................................................TTTGTGACCGACACTAACGGGTAG.......................................................................................................................................................24117.00170204110
...................................................................................................................................................TTTGTGACCGACACTAACGGTA.........................................................................................................................................................22116.00160303100
...................................................................................................................................................TTTGTGACCGACACTAACGGTG.........................................................................................................................................................22116.00160002140
..................................................................................................................................................TTTTGTGACCGACACTAACGGGT.........................................................................................................................................................23113.0013070240
.....................................................................................................................................................TGTGACCGACACTAACGGG..........................................................................................................................................................19113.00130130000
......................................................................................................................................................................................................................CTCGTTTTTGCGATCACA-ATA......................................................................................21112.0012030630
...................................................................................................................................................TTTGTGACCGACACTAACGGGTCT.......................................................................................................................................................24112.0012000660
....................................................................................................................................................TTGTGACCGACACTAACGGGTAA.......................................................................................................................................................23112.0012010830
......................................................................................................................................................GTGACCGACACTAACGGGT.........................................................................................................................................................19111.0011070220
...................................................................................................................................................TTTGTGACCGACACTAAC.............................................................................................................................................................18110.0010030250
....................................................................................................................................................TTGTGACCGACACTAACGGGTAT.......................................................................................................................................................2319.009060030
...................................................................................................................................................TTTGTGACCGACACTAACGGGTAAT......................................................................................................................................................2519.009000630
...................................................................................................................................................TTTGTGACCGACACTAACGGA..........................................................................................................................................................2118.008010430
....................................................................................................................................................TTGTGACCGACACTAACGGGG.........................................................................................................................................................2118.008010340
..................................................................................................................................................TTTTGTGACCGACACTAACGGGTA........................................................................................................................................................2418.008080000
droAna3
TAA--AAAACAGA------------------------------------------------------------------------------------A----------------------------------ATGTTGCAGTTTCGTTTTGTGACCGACACTAACGGGTATTTTACAGGACA-------------------TACAGGA-T--TACTCGTTTTTGCGATCACAAATCCTGAAATTGCAGCAAAA-AACAGCAAA-----------------------------------------------------------SizeHit CountTotal NormTotalM044

Female-body		M058

Embryo		V039

Embryo		V055

Head		V105

Male-body		V106

Head
...................................................................................................................................................TTTGTGACCGACACTAACGGGT.........................................................................................................................................................221187009.001870091155326444083515127525
...................................................................................................................................................TTTGTGACCGACACTAACGGGTA........................................................................................................................................................23119217.001921779780033901697680
...................................................................................................................................................TTTGTGACCGACACTAACGGG..........................................................................................................................................................2114206.004206210000666411399
...................................................................................................................................................TTTGTGACCGACACTAACGG...........................................................................................................................................................2013038.00303838700389262236
...................................................................................................................................................TTTGTGACCGACACTAACGGGA.........................................................................................................................................................2212281.00228110600660471468
...................................................................................................................................................TTTGTGACCGACACTAACGGGC.........................................................................................................................................................2211610.001610430011277433
...................................................................................................................................................TTTGTGACCGACACTAACGGGTAA.......................................................................................................................................................2411484.0014841030036616999
...................................................................................................................................................TTTGTGACCGACACTAACGGGTAT.......................................................................................................................................................2411398.0013982020155930606
...................................................................................................................................................TTTGTGACCGACACTAACG............................................................................................................................................................1911302.001302177006064515
...................................................................................................................................................TTTGTGACCGACACTAACGGT..........................................................................................................................................................2111251.00125121008941137
....................................................................................................................................................TTGTGACCGACACTAACGGGT.........................................................................................................................................................2111244.0012441031001008105
...................................................................................................................................................TTTGTGACCGACACTAACGGGTT........................................................................................................................................................231806.00806133002687398
...................................................................................................................................................TTTGTGACCGACACTAACGGGG.........................................................................................................................................................221725.0072539004124270
....................................................................................................................................................TTGTGACCGACACTAACGGGTA........................................................................................................................................................221679.0067966400708
...................................................................................................................................................TTTGTGACCGACACTAACGT...........................................................................................................................................................201433.004335009934295
......................................................................................................................................................................................................................CTCGTTTTTGCGATCACAAATC......................................................................................221240.00240100083219
....................................................................................................................................................TTGTGACCGACACTAACGGG..........................................................................................................................................................201172.0017216900201
.....................................................................................................................................................TGTGACCGACACTAACGGGT.........................................................................................................................................................20195.0095620014019
...................................................................................................................................................TTTGTGACCGACACTAACGGGTATT......................................................................................................................................................25194.0094120028450
...................................................................................................................................................TTTGTGACCGACACTAACGGGTC........................................................................................................................................................23188.008890058021
...................................................................................................................................................TTTGTGACCGACACTAACGGGTAC.......................................................................................................................................................24183.0083570015011
...................................................................................................................................................TTTGTGACCGACACTAACGGGTAG.......................................................................................................................................................24181.0081200013048
......................................................................................................................................................................................................................CTCGTTTTTGCGATCACAAATCCT....................................................................................24174.0074260010236
...................................................................................................................................................TTTGTGACCGACACTAACGGA..........................................................................................................................................................21171.007110022048
......................................................................................................................................................................................................................CTCGTTTTTGCGATCACAAATCC.....................................................................................23168.006820007041
...................................................................................................................................................TTTGTGACCGACACTAACGGTA.........................................................................................................................................................22137.00376006025
.....................................................................................................................................................TGTGACCGACACTAACGGGTA........................................................................................................................................................21137.00373600100
....................................................................................................................................................TTGTGACCGACACTAACGG...........................................................................................................................................................19136.00363500100
...................................................................................................................................................TTTGTGACCGACACTAACGGGTAAA......................................................................................................................................................25132.00325006021
...................................................................................................................................................TTTGTGACCGACACTAACGGGTG........................................................................................................................................................23126.0026900809
..................................................................................................................................................TTTTGTGACCGACACTAACGGGT.........................................................................................................................................................23121.00211400403
...................................................................................................................................................TTTGTGACCGACACTAACGGGTTA.......................................................................................................................................................24120.00201005014
...................................................................................................................................................TTTGTGACCGACACTAACGGC..........................................................................................................................................................21119.0019100909
.......................................................................................................................................................TGACCGACACTAACGGGT.........................................................................................................................................................18119.00193000016
...................................................................................................................................................TTTGTGACCGACACTAACGGTC.........................................................................................................................................................22118.00180001602
....................................................................................................................................................TTGTGACCGACACTAACGGGTAT.......................................................................................................................................................23118.00181600200
...................................................................................................................................................TTTGTGACCGACACTAACGGTG.........................................................................................................................................................22117.00170001700
...................................................................................................................................................TTTGTGACCGACACTAAC.............................................................................................................................................................18116.0016100807
....................................................................................................................................................TTGTGACCGACACTAACGGGTAA.......................................................................................................................................................23116.00161300201
...................................................................................................................................................TTTGTGACCGACACTAACT............................................................................................................................................................19116.00160003013
....................................................................................................................................................TTGTGACCGACACTAACGGGTT........................................................................................................................................................22115.00151500000
...................................................................................................................................................TTTGTGACCGACACTAACGTT..........................................................................................................................................................21115.00150005010
...................................................................................................................................................TTTGTGACCGACACTAACGGGCT........................................................................................................................................................23115.00151001301
...................................................................................................................................................TTTGTGACCGACACTAACGGCC.........................................................................................................................................................22114.00140001400
...................................................................................................................................................TTTGTGACCGACACTAACGGCA.........................................................................................................................................................22113.0013000904
......................................................................................................................................................................................................................CTCGTTTTTGCGATCACAAATCCTT...................................................................................25112.0012400008
......................................................................................................................................................GTGACCGACACTAACGGGT.........................................................................................................................................................19112.0012500016
......................................................................................................................................................................................................................CTCGTTTTTGCGATCACAAAT.......................................................................................21111.00110000011
....................................................................................................................................................TTGTGACCGACACTAACGGGA.........................................................................................................................................................21111.0011700004
...................................................................................................................................................TTTGTGACCGACACTAACGGGTTG.......................................................................................................................................................24110.0010300106
.....................................................................................................................................................TGTGACCGACACTAACGGG..........................................................................................................................................................1919.009900000
...................................................................................................................................................TTTGTGACCGACACTAACGGAA.........................................................................................................................................................2218.008100304
......................................................................................................................................................GTGACCGACACTAACGGGTA........................................................................................................................................................2018.008800000
....................................................................................................................................................TTGTGACCGACACTAACG............................................................................................................................................................1818.008800000
droBip1
AAA--G----CTAA--------------------------------------------------------------------------------ACTT-TATTACGGAGTGAAGTGTTTTTGAAGACAGA--ATGTTGCAGTTTCGTTTTGTGACCGACACTAACGGGTATTTTACAGGAT-------------------TTACAGGA-T--TACTCGTTTTTGCGATCACAAATCCTGAAATTGCAGCAAAA-AACAGCAAAAATAAAA-----------------TATCATAGTTGGTGTAAATATTAGAAACCGTAAAASizeHit CountTotal NormTotal
No Reads
droKik1
TAT--ATAGTGGAA-------------------------------A-------TAGT-----------------AAAAAGT-T------CC-TATCCTTTTTTAA--------------------------CGTGTTGCTGTTTCGCTTTGTGACCGACACTAACGGGTAATTGTTTGGCCTTC---T--TAGCCGTT--CCGCTGGA-T--TACTCGTTTTTGCGATCACAAATCCTGAAATTGCAGCTAAG-AGCAGCA-------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droFic1
TTGCCCAGG-CTAAAGCCA--------------------------------------------------GTGATCAGGAGT-T------CC-TATCCT----------------------------------GTGTTGTTGTTTCGTTTTGTGACCGACACTAACGGGTAATTGATCGGCCCCC---A-AAAGCCGCCCACCGCAGGA-T--TACTCGTTTTTGCGATCACAAATCCTGAAATTTCAGCAAAG-AGCAGCAA-TTCAGGGAACCAGTGAAAATATAAT----------------------------ATAGTASizeHit CountTotal NormTotal
No Reads
droEle1
CAA--TAAAGTCAAAAGAAATCACCTCATGGTGCTTC------------------------------TGGTGATCAAGAGT-T------CCGAATCCT----------------------------------GTGCTGCAGTTTCGTTTTGTGACCGACACTAACGGGTAATTGATTGGCCC-------------------CGCAGGA-T--TACTCGTTTCTGCGATCACAAATCATGAAATTGCAGCCAAA-AGCAACAAAATCGTGGAACCAGTGAA------------------------------------------SizeHit CountTotal NormTotal
No Reads
droRho1
TGA--T--------------------------------------------------------------------CAAGAGT-T------CCAAATCCT----------------------------------GTGTTGCAGTTTCGTTTTGTGACCGACACTAACGGGTAATTGTTCGGCT-------------------CCGCAGGA-T--TACTCGTTTTTGCGATCACAAATCATGAAATTGCAGCAAAA-AGCAGCAAAATCGTGGAACCAGTGAAAAAAT---A----------------------------TTCAASizeHit CountTotal NormTotal
No Reads
droBia1
CCC--AAAG-CTACTCCAA--------------------------------------------------ATCACC-------TCCAAACCCACATCCT----------------------------------GTGTTGCAGTTTCGTTTTGTGACCGACACTAACGGGTAATTGTCCGGCCCCC---A-GGAGCCGCC--CCTCAGGA-T--TACTCGTTTTTGCGATCACAAATCCTGAAATTGCAGCAAAG-AGCAGCAAAGTCCTGGAACCAGTGAAAATAC---A---------------------------AT-AAASizeHit CountTotal NormTotal
No Reads
droTak1
GGA--AAA--------CAA--------------------------------------------------GTTACCAAGAGT-TCCGAATCCGAATCCT----------------------------------GTGTTGCAGTTTCGTTTTGTGACCGACACTAACGGGTAATTGTTCGGCCCCC---A-AAAGCCGCC--CCGCAGGA-T--TACTCGTTTTTGCGATCACAAATCCTGAAATTGCAGCAAAG-AGCAGCAAAATCAAGGAACCAGTGAA------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEug1
AT------------------------------------------------------------------------CAAGAGT-T------CCAAATCCT----------------------------------GTGTTGCAGTTTCGTTTTGTGACCGACACTAACGGGTAATTGTATGGCCTAA---AAGGAGCCGCT--CACCAGGA-T--TACTCGTTTTTGCGATCACAAATCATGAAATTGCAGCAAAA-AGCAGCTAAATCAGGGAACTAGTGAA------------------------------------------SizeHit CountTotal NormTotal
No Reads
dm3
TGG--T--------------------------AGTTT------------------------------TGG-----------------TGACGAATCCT----------------------------------GTGTTGCAGTTTCGTTTTGTGACCGACACTAACGGGTAATTGTTTGGCCGC--------------------CAGGA-T--TACTCGTTTTTGCGATCACAAATTATGAAATTGCAGCAAAA-CTCAACGAAATTGTGGAACCAGTAAAAATAG---A------------------T--------AGAAAASizeHit CountTotal NormTotalGSM154618

Ovary		GSM154620

Ovary		GSM154621

Ovary		GSM154622

Ovary		GSM180328

Head		GSM180329

Mixed-body		GSM180330

Embryo		GSM180331

Embryo		GSM180332

Embryo		GSM180333

Embryo		GSM180334

Larvae		GSM180335

Disc		GSM180336

Pupae		GSM180337

S2		GSM239041

Head		GSM239050

Head		GSM239051

S2		GSM239052

S2		GSM246084

Head		GSM266765

S2		GSM280082

Ovary		GSM280083

Ovary		GSM280084

Ovary		GSM280085

Testis		GSM280086

Ovary		GSM280087

S2-NP		GSM280088

S2-NP		GSM312995

Head		GSM313160

Head		GSM313161

Head		GSM313162

Head		GSM313163

Head		GSM313164

Head		GSM313165

Head		GSM343287

Embryo		GSM379050

Ovary		GSM379051

Ovary		GSM379052

Ovary		GSM379053

Ovary		GSM379054

Ovary		GSM379055

Ovary		GSM379056

Ovary		GSM379057

Ovary		GSM379058

Ovary		GSM379059

Ovary		GSM379060

Ovary		GSM379061

Ovary		GSM379062

Ovary		GSM379063

Ovary		GSM379064

Ovary		GSM379065

Ovary		GSM379066

Ovary		GSM379067

Ovary		GSM424739

S2		GSM424740

S2		GSM424741

S2		GSM467729

Female-body		GSM467730

Female-body		GSM467731

Female-body		M002

CS		M003

Male-body		M004

Male-body		M005

ML-DmD32		M006

ML-DmD32		M029

OSC		M030

OSC		M031

OSC		M032

S2-R+		M033

S2-R+		M034

S2-R+		M035

S2-R+		M036

S2-R+		M037

S2-R+		M038

S2-R+		M039

S2-R+		M048

S2-R+		OSS2

OSS		OSS6

OSS		OSS7

OSS		OSS8

OSS		S1

Head		S10

Embryo		S11

Embryo		S12

Embryo		S13

Embryo		S14

Embryo		S15

S2-GMR		S16

Kc		S17

Larvae		S18

Larvae		S19

Pupae		S2

Head		S20

Pupae		S21

Disc		S22

Head		S23

Female-body		S24

Male-body		S25

Larvae		S26

Larvae		S27

Pupae		S28

Pupae		S29

Head		S3

Male-body		S30

S2-GMR		S31

S2		S32

S2		S33

Kc		S34

Kc		S35

Kc		S4

Female-body		S5

Disc		S6

Embryo		S7

Embryo		S8

S2		S9

Embryo		SRR001337

Head		SRR001338

Head		SRR001339

Head		SRR001340

Head		SRR001341

Head		SRR001342

Head		SRR001343

Head		SRR001344

Head		SRR001345

Head		SRR001346

Head		SRR001347

Head		SRR001348

Head		SRR001349

Head		SRR001664

Head		SRR010951

Ovary		SRR010952

Ovary		SRR010953

Ovary		SRR010954

Ovary		SRR010955

Ovary		SRR010956

Ovary		SRR010957

Ovary		SRR010958

Ovary		SRR010959

Ovary		SRR010960

Ovary		SRR014268

Embryo		SRR014269

Embryo		SRR014270

Embryo		SRR014271

Embryo		SRR014272

Embryo		SRR014273

Ovary		SRR014274

Ovary		SRR014275

Ovary		SRR014276

Ovary		SRR014277

Ovary		SRR014278

Ovary		SRR014279

Ovary		SRR014280

Ovary		SRR014281

Ovary		SRR014282

Ovary		SRR023197

S2		SRR023399

S2		SRR023400

S2		SRR023402

S2		SRR023407

S2		SRR029028

S2		SRR029029

S2		SRR029030

S2		SRR029031

S2		SRR029032

S2		SRR029033

S2		SRR029608

Head		SRR029633

Head		SRR030145

gb3		SRR031692

Head		SRR031693

Head		SRR031694

Head		SRR031696

Head		SRR031697

Head		SRR031698

Head		SRR031699

Head		SRR031700

Head		SRR031701

Head		SRR031702

Head		SRR031703

Head		SRR031704

Head		SRR032092

S2		SRR032093

S2		SRR032094

S2		SRR032095

S2-NP		SRR032096

S2-NP		SRR032152

Head		SRR060643

Testis		SRR060644

Ovary		SRR060645

Testis		SRR060646

Ovary		SRR060647

Ovary		SRR060648

Ovary		SRR060649

Ovary		SRR060650

Testis		SRR060651

Ovary		SRR060652

Testis		SRR060653

Ovary		SRR065151

Ovary		SRR065152

Ovary		SRR065153

Ovary		SRR065154

Ovary		SRR065155

Ovary		SRR065800

Ovary		SRR065801

Ovary		SRR065802

Ovary		SRR065803

Ovary		SRR065804

Ovary		SRR065805

Ovary		SRR065806

Ovary		SRR065807

Ovary		SRR097865

S2-NP		SRR097866

S2-NP		SRR097867

S2-NP		SRR298536

Ovary		SRR298537

Ovary		SRR298711

Ovary		SRR298712

Ovary		SRR317110

Ovary		SRR317111

Ovary		SRR317112

Ovary		SRR317113

Ovary		SRR317114

Ovary		SRR317115

Ovary		SRR317116

Ovary		SRR317117

Ovary		SRR341115

S2		SRR341116

S2		SRR341117

S2		SRR341118

S2		SRR351332

Mixed-body		SRR351333

Mixed-body		T004

OSC		T005

CME-L1		V001

Embryo		V002

Embryo		V003

S2		V006

Female-body		V007

Head		V008

S2		V009

CME-L1		V010

ML-DmD20-C5		V011

Sg4		V012

Male-body		V013

Head		V014

DTT		V015

DreRFHV		V018

Kc167		V019

GM2		V020

S2-R+		V021

ML-DmD21		V022

ML-DmD32		V023

Head		V024

Kc167		V025

S2-R+		V026

1182-2H		V027

ML-DmD21		V028

CME-W1-Cl.8+		V029

ML-DmD9		V030

ML-DmD8		V031

GM2		V032

S1		V033

CME-W1-Cl.8+		V034

ML-DmD16-C3		V035

ML-DmD32		V036

ML-DmD20-C5		V037

S2		V038

S2		V063

Ovary		V0632

Ovary		V064

Ovary		V0642

Ovary		V065

Ovary		V0652

Ovary		V066

Ovary		V0662

Ovary		V067

S2-NP		V073

mbn2		V074

S3		V075

ML-DmBG1-C1		V076

ML-DmBG3-C2		V077

Head		V078

Head		V079

Head		V080

Head		V081

Embryo		V082

Embryo		V083

Male-body		V084

Female-body		V085

CME-W2		V086

Female-body		V088

Ovary		V0882

Ovary		V089

Ovary		V0892

Ovary		V090

Male-body		V091

fGS/OSS		V092

Male-body		V093

Male-body		V094

S2-R+		V095

S2-R+		V096

Ovary		V097

Ovary		V098

Ovary		V125

ML-DmD9		V126

CME-L1		V127

G2		V128

S3		V129

ML-DmBG1-C1		V130

ML-DmBG3-C2		V131

ML-DmD16-C3		V132

ML-DmD32		V133

Sg4		V134

ML-DmD8		V135

CME-W2		V136

Male-body		V137

Head		V138

Male-body		V139

Female-body		V140

Female-body		V141

Female-body		V142

Female-body		V144

OSC		V145

S2		V146

S1		V147

1182-2H		V148

mbn2		GSM1528798

follicle cells
...................................................................................................................................................TTTGTGACCGACACTAACGGGT.........................................................................................................................................................221776433.0077643300001229000000009751401400127140284505742737927914354103383734090203391939403698131372620325228582138000100962600000000000000000000046713000000011083113797148831102752077301901122370902114207716764378251625903100108361082263902902869773183789825002722161012180010001421181421132892215470000035202872228327900019465472919669120953151573743518755702786313908442610633352947111283154033196522600130000011618700320001037827932292169111320929847732444550621100152005122470218635351031876924810284860631127885772301321134633013462544240017280618697914798902124531335384062882044985101016226551165117851965122516814823826726171482575544500010201135794372150781435386123873173150242311
...................................................................................................................................................TTTGTGACCGACACTAACGGGTA........................................................................................................................................................231375656.003756560000310400000301156710016076021337241304022415363119909624443401023747486411422351078000191280460000000000000000000014861901600005421444162221134616052035337067133533563040921173923772816331142151735915657049701842471539687665767478008000013181926200000002714220650750000000001022489297560187286129106051388147315685527145021311640019301203003347649529533211003243447600000415100000000017113084993051242402314523615051055700000583900310454169638118272058194117600210110314010000612205310451801232237916870000518423507251438131136520016631621118317049980727183428710000000000303316421698235163210001000
...................................................................................................................................................TTTGTGACCGACACTAACGGGTAT.......................................................................................................................................................24171134.00711340000124400000000119603180020601000000000012002200400002211000000000000000000000000000154110000000113281196467288000521531700176811200014463538058381227235363632117311871126170820390000120510000001121049100500000000000708787270490648162428855631734041346588513017000048513863218000013921590000005100001000001316710950523274120481140000025210010051291140001585271750000017900000000000002173481421962900002106013831287145100943301761111108044871006600001000000456224114611830000000
...................................................................................................................................................TTTGTGACCGACACTAACGGG..........................................................................................................................................................21166369.0066369000031200000000115223099900011916000782542665169123100321000040520001010000409340000000000000000000001041000000000110002721776000179280040114011086435658984716741131397159031172729710921846122404205200000000001300000000005000040964848029361782942201760293592435219550837200000910360039000034027000000020010000001737411938235119185261001530000030286110003301410217900100122000000000000043080307260000034536332689010199011031044046920015400000000000237264312201016000000
...................................................................................................................................................TTTGTGACCGACACTAACGGGTAA.......................................................................................................................................................24149656.0049656000012450000000032201034011130004365325072144950180000101300001000000299246590000000000000000000001538006010051365001118432050007201313001002071501123612221820823234229215890111116814797612010000020220000000000015000000000000000412852110330484104224915827304120922325612300000294813624902005104600000074000001900016115341555676821200003726000003720460002594891820000014801000000100003133131041321500000482743548690004014010740035023561204500000000000273282310281013000000
...................................................................................................................................................TTTGTGACCGACACTAACGG...........................................................................................................................................................20111980.0011980000070000000002310846000001230000108300000001000000000100000012500000000000000000000001600000000001100182500001741000002000000398484131501872676239626928338480220000330000000000000000000000000076111630546262303861659463660567943000007936010000050500000000000000000022310071104000040000001763000747332590000034000000000000000130011010000218919425141100711201002024000020000000000010585222456001000
...................................................................................................................................................TTTGTGACCGACACTAACGGGTT........................................................................................................................................................23110804.00108040000500000000040025100007000000000000000000000000000000000000000000000000000000000210000010000920015190000851300000000000194561195360652215012291724226300000000000000000010300010000000000086688206080064022610274119938136866000001883140400001002000000100000000000134103242404000083000001872400050170020000001800000000000000003001000000008611110915900120500002058000000000000000056552124000000
...................................................................................................................................................TTTGTGACCGACACTAACGGGA.........................................................................................................................................................2219862.009862000010000000000100500001110000000000001000022010000020000000000000000000000000000025000000000037003120000364000000000000510812421480183254974124778374000000000000000000008000000000000000371400028701167247519484040424680000013829016000080700000002000000000461640015000100007400000101624000494201270000034000000000000000228144301150000048434047663310700104301450354700002000000000001867119527813000000
...................................................................................................................................................TTTGTGACCGACACTAACGGGC.........................................................................................................................................................2219831.0098310000500000000030000001215000000000000300112301000111000000000000000000000000000009000000000050041500002410000020000007972092122010915488312838145790000000000100000100011000000000000010608631051500184702401300239353100001518141900004030000001000000000006480015010000000000000816718000591860300000036000000000000010681322120217000034235174245380074044123213916752101030000000000027457277251619001000
...................................................................................................................................................TTTGTGACCGACACTAACGGGG.........................................................................................................................................................2219407.009407000001000000000000000025000000000000400000901000304010000000000000000000000000001000000000020091200002200000001000028121352038442461421413910218013800000000000000000000400000000000100030837302760041136258171548932400000475110120000607000000110000000000101100120000000000000001021415000111213258000007200000000000001042213182800000455565491152002140235421104067790000000000000000141881241458100000
...................................................................................................................................................TTTGTGACCGACACTAACG............................................................................................................................................................1918175.0081750000000000000000044011060400033262351614600110000001100000010004310000000000000000000001910000000002510571025000019970020121020175345783251331523015225140184002100000000000000000300000000000000032944302193417518062553735134418800000650642310000170350000002000000000061423511140100010000000002613030006961103000001380000000000000100501030400000130144205344005904010060173800003000000000001040529113811000000
...................................................................................................................................................TTTGTGACCGACACTAACGGGTC........................................................................................................................................................2315674.005674000010000000002000000017000000000000000000100000000000000000000000000000000000009000000000090065030000810000000000001821596979131100452621204481441546000000000000000000000000000000000001022118301420012181901702620000088001000000000000000000000000003000000000000055180000076510002755040000080000000000000000000000000000131593600200000001301400000000000000000711010000000
...................................................................................................................................................TTTGTGACCGACACTAACGGGTATC......................................................................................................................................................2515487.0054870000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000020000000000000175010100030240000000000000000000000000000000000003604002303250110000007001000000000000000000000000000000000011000035301862000000000000001000001000000000000000000000000000044330000000000000000000000000000000201000000000
...................................................................................................................................................TTTGTGACCGACACTAACGGGTAC.......................................................................................................................................................2415339.00533900001200000000011003100000000000000000000000001000000000000000000000000000000000001300000000002200936361000132400100310100565625423103012761191191741990000000020000000000000000000000000004024450302012491694193038315412000000676601100000100000011000000000122031322813000026150000011300001929051000050000000000000000000000100000102214330031000000200100000000000000001700000000000
....................................................................................................................................................TTGTGACCGACACTAACGGGT.........................................................................................................................................................2114519.004519000020000000001005000017010111740125820000000000000000000000012000000000000000000000030000000000400704000026100000000000011952481440616630910711338610000310040000000000010000000000000001873060235211563198444137915230000031560900009030000000300000000029530011110200000000000441200019540900000110000000000000002401000400000586549820002000100300110103000000000000594821259000000
....................................................................................................................................................TTGTGACCGACACTAACGGGTA........................................................................................................................................................2213663.003663000020000000006100000006000110833724400000001000000000000000065200000000000000000000030000000000700807000040200100000000011102102341060463083584586100000000000000000000100000000000000020632702561193353104511548144900000221001000000100000000000000000043102111006000010000000000005804000001000000000000000020000000000015580010000000001100000000000000000510110000000
...................................................................................................................................................TTTGTGACCGACACTAACGGGTAG.......................................................................................................................................................2412915.002915000050000000007000000001000000000000000000000000000000000000000000000000000000003000000001050020012000032100000000000101571413013946170952650000000000000000000050000000000000002222840169018810011405309136311000002919010000030200000000000000000040004323312000000000000241000236709000001100000000000000001000000000003328345000100000001025000020000000000054420620000000
......................................................................................................................................................................................................................CTCGTTTTTGCGATCACAAATT......................................................................................2212609.0026090000000000000000000000010001223059163601000000000000000000000000000000000000000000000020000000000200602000090000000000000115351505732121860000000000000000000020000000000000007561061251314376316249781312028470000042000000000000000000000000000000000000000000000000002000000120300000000000000000003301000210000002613283100200302003012010000000000000044631302000000
...................................................................................................................................................TTTGTGACCGACACTAACGGGTTT.......................................................................................................................................................2412327.00232700000000000000100000000000000000000000000000000000000000000000000000000000000000290000000000720014130000301000000000000309311010123300401474200000000000000000000100000000000000022722701150078334380270336213000002492010000200000000000000000000100000000000000000000011400004210000000700000000000000010000000000003332415200000000002033000000000000000034001000000000
...................................................................................................................................................TTTGTGACCGACACTAACGGT..........................................................................................................................................................2111999.001999000010000000000002000003000000000000000000000000000000000000000000000000000000000000000000000020000005100000000000035230090271444163550630000000000000000000020000000000000005269035002251157473064000000101102000000100000000000000000011000000000000000000001250001225010800000100000000000000100000010000000282244870010000000201100000000000000008302131313000000
...................................................................................................................................................TTTGTGACCGACACTAACGGGTAATC.....................................................................................................................................................2611459.0014590000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000919540000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................TTTGTGACCGACACTAACGGGTG........................................................................................................................................................2311340.00134000003100000000300100000600000000000000000000000000000000000000000000000000000000900000000001100701000022000001000000155966018027764415113200000000000000000000000000000000000002161980180002425030066087300000900000000001000000100000000000021000000000000000000034000091104000003000000000000000000000000000030160000000000000000001000000000000410100000000
...................................................................................................................................................TTTGTGACCGACACTAACGGGTAAA......................................................................................................................................................2511338.001338000040000000000000100000000000000000000000000000000000000000000000000000000000001000000000001200281600007300000000000000621221901094802712929000000000000000000000000000000000000147159010200215916517311222000006530000001010000000000000000012000000000000000000000230000580100000200000000000000001000000000001821241700310000002011000000000000000001223200000000
...................................................................................................................................................TTTGTGACCGACACTAACGGGTCT.......................................................................................................................................................2411287.001287000010000000000000000000000000000000000010000000000000000000000000000000000000002000000000020028000000400000000000001139858330301001676115155000000000000000000000000000000000000105780560000020415000000620000000000000000000000000000200000000000000000000223000026000000000000000000000000000000000000412150020000010000000000000000000000100000000000
......................................................................................................................................................................................................................CTCGTTTTTGCGATCACAAATTA.....................................................................................2311119.001119000010000000000000000000000256222335200000000100000000000000020000000000000000000000200000000001000706001045000000000100753429140176701131630000000000000000000000000000000000009785011622438242463396571400000020000000000000000000000000000000000110100000000000010000024010000000000000000000100000020000000956900000000003000000000000000000001400001000000
...................................................................................................................................................TTTGTGACCGACACTAACGT...........................................................................................................................................................2011030.001030000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000140010210023863500000000000000000000000000000000000045020032074908000000131010000102000000000000000000011000000000000000000019000056600000004000000000000000000001010000023182167001001010170127000000000000000026541160622000000
...................................................................................................................................................TTTGTGACCGACACTAACGGGTAAT......................................................................................................................................................251858.008580000000000000010001000000000103424000000000000000000000000514100000000000000000000010000000000800150000001300000100000000423020511002331418000000000000000000000000000000000000109124060001230037142099000000221000000200000000000000000000200000001000000111100000020000030300000100000000000000000000000000001271590020000000000000000000000000000000000000000
....................................................................................................................................................TTGTGACCGACACTAACGGG..........................................................................................................................................................201629.006290000000000000010130000010000215457000000000000000000000000100000000000000000000000000000000000000010000200000000000000325000100140154413000000000000000000000000000000000000335803300386815921902330000062000000000000000000000000000010000000000000000000000000000300000000000000000000000000000000000000010000000000000000000000000000000200200000000
...................................................................................................................................................TTTGTGACCGACACTAACGGGATC.......................................................................................................................................................241624.006240000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000464160000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................TTGTGACCGACACTAACGGGTAA.......................................................................................................................................................231581.0058100001000000000100000000000001253510000000000000000000000009121000000000000000000000100000000004009150000222001002000000016203060301126160000000000000000000000000000000000005257035001256259180620000028000000000100000000000000000010000000000000000000000100002401000001000000000000000000000000000011140000000001000000000000000000000100000000000
....................................................................................................................................................TTGTGACCGACACTAACGGGTAT.......................................................................................................................................................231564.0056400000000000000200010000000000000000000000000000000000000000000000000000000000000000000000001002050000120000000000000021100103011090161100000000000000000000000000000000000064860720096858121001100000033101000000000000000000000000011000000000000000000000000003000000000000000000000000000000000000011620000000000000000000000000000000100000000000
...................................................................................................................................................TTTGTGACCGACACTAAC.............................................................................................................................................................181563.005630000000000000000000000080005481061337000000000000000000000010000000000000000000000000000000000000011000000000000000000054130239116471613008180000000000000000000000000000000014290111051716117523209280000066000000000000000000000000000001000000000000000000000100000000000000000000000000000000000000000001120000000000100000000000000000000000000000000
...................................................................................................................................................TTTGTGACCGACACTAACGGGTGT.......................................................................................................................................................241524.005240000200000000000000000000000000000000000001000000000000000000000000000000000000050000000000140070100001320000000000002216020116010340000000000000000000000000000000000007694057006409023024000000202010000000000000000000000000110000000000000000000004000004000000030000000000000001000000200000758600000000001015000000000000000015651013000000
...................................................................................................................................................TTTGTGACCGACACTAACGGGTATA......................................................................................................................................................251463.004630000000000000010010000000000000000000000000000000000000000000000000000000000000000000000000100702000011000000000000009110100996315581100000000000000000000000000000000000022450170081801803313980000034100000000100000000000000000000000110000000063000000100003701000001000000000000000000000000000092490000000000000100000000000000000500000000000
......................................................................................................................................................................................................................CTCGTTTTTGCGATCACAAATTAT....................................................................................241344.0034400000000000000000000000000002700000000000000000000000000000000000000000000000000020000000000500151300102000000001000000610004010005000000000000000000000000000000000000041340570011169301210621000001000000000000000000000000000000000010001000000000000100000000000000000000000000000000000000000002100030000000001000000000000000001200000000000
...................................................................................................................................................TTTGTGACCGACACTAACGGA..........................................................................................................................................................211343.00343000030000000000000000004000000000000000000000000000000000000000000000000000000002000000000000000100000000000000000002010001217031790000000000000000000000000000000000001724090091311912901700000071000000000000000000000000000000000000000000021000000000002140100000000000000000000000000000000007231100000000001011000000000000000001600000000000
...................................................................................................................................................TTTGTGACCGACACTAACGGGCT........................................................................................................................................................231313.00313000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000008702001101201190000000000000000000000000000000000007658039002301013013300000230000000000000000000000000000000000000000000000000003000031212000000000000000000000000000000000012020000010000100000000000000000000000000000000
.....................................................................................................................................................TGTGACCGACACTAACGGGT.........................................................................................................................................................201301.0030100000000000000000100000000002000000000000000000000000000100000000000000000000000000000000001000010000000000000000002680102012170100000000000000000000000000000000400009120110016210262402000000490010000101000000000000000000020000000000000000000015000066020000030000000000000000000000000000111191800000000000020000000000000000021420101000000
..........................................................................................................................................................................ATTGTTTGGCCGC--------------------CAGGA-T--TA............................................................................................................211278.00278000001000000000000000000000011000000000000000000000000000452000000000000000000000000000000002000000000700000000000000811106010200100000000000000000000000000000000000017140152032921011101030500000010000000000000000000000000000000000001000000000000000000002000000000000000000000000000000000000011300010000000001000000000000000001100000000000
...................................................................................................................................................TTTGTGACCGACACTAACGGC..........................................................................................................................................................211233.0023300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000121010015080370000000000000000000010000000000000003146022007507060000000046000000000000000000000000000000000000000000030000000000001900000000000000000000000000000000000021060000000000000100000000000000000100000000000
...................................................................................................................................................TTTGTGACCGACACTAACGGTA.........................................................................................................................................................221232.0023200003000000000000010000000000000000000000000000000000000000000000000000000000000000000000000001020000700000000000000360102419050230000000000000000000000000000000000009140200235156320100000060000000000000000000000000000000001010010000000000000000007010000000000000000000000000000000000536130010000000000000000000000000000300000000000
droSim2
TAG------------------------------------------------------------------------------------TGACAAATCCT----------------------------------GTGTTGCAGTTTCGTTTTGTGACCGACACTAACGGGTAATTGTTTGGTCAC--------------------CAGGA-T--TACTCGTTTTTGCGATCACAAATCATGAAATTGCAGCAAAA-CGCAACAAAGTCGTGGAACTAGTGAAAATAT---A----------------------------T-AGASizeHit CountTotal NormTotalM023

Head		M024

Male-body		M025

Embryo		M053

Female-body		O001

Testis		O002

Head		SRR553485

Ovary		SRR553486

Ovary		SRR553487

Ovary		SRR553488

Ovary		SRR618934

Ovary		V044

Embryo		SRR902008

Ovary		SRR902009

Testis		SRR1275487

Male larvae		SRR1275485

Male prepupae		SRR1275483

Male prepupae
...................................................................................................................................................TTTGTGACCGACACTAACGGGT.........................................................................................................................................................22193609.0093609790465456160276700506973221615370192000
...................................................................................................................................................TTTGTGACCGACACTAACGGGTA........................................................................................................................................................23118599.00185991311260825227400188929023205863291000
...................................................................................................................................................TTTGTGACCGACACTAACGGGC.........................................................................................................................................................22110178.001017896744821360030000000000
...................................................................................................................................................TTTGTGACCGACACTAACGGG..........................................................................................................................................................2118557.00855771694922130500468442060050000
...................................................................................................................................................TTTGTGACCGACACTAACGGGG.........................................................................................................................................................2214327.00432739593437500111000001000
...................................................................................................................................................TTTGTGACCGACACTAACGG...........................................................................................................................................................2012458.0024582225816310080200000015000
...................................................................................................................................................TTTGTGACCGACACTAACGGGTT........................................................................................................................................................231997.009978976032000110001005000
...................................................................................................................................................TTTGTGACCGACACTAACGGGTAT.......................................................................................................................................................241738.0073860615032002241060052000
...................................................................................................................................................TTTGTGACCGACACTAACGGGA.........................................................................................................................................................221583.005834653712000509000001000
...................................................................................................................................................TTTGTGACCGACACTAACG............................................................................................................................................................191577.00577543150140021001001000
....................................................................................................................................................TTGTGACCGACACTAACGGGT.........................................................................................................................................................211329.0032997502240030000000000
...................................................................................................................................................TTTGTGACCGACACTAACGGGTAA.......................................................................................................................................................241312.0031215150560050161030030000
....................................................................................................................................................TTGTGACCGACACTAACGGGTA........................................................................................................................................................221174.0017412101580020000001000
...................................................................................................................................................TTTGTGACCGACACTAACGGAC.........................................................................................................................................................221170.001701664000000000000000
...................................................................................................................................................TTTGTGACCGACACTAACGGGTAC.......................................................................................................................................................241160.0016013650130012001002000
...................................................................................................................................................TTTGTGACCGACACTAACGGGTC........................................................................................................................................................231142.001421343020030000000000
...................................................................................................................................................TTTGTGACCGACACTAACGGA..........................................................................................................................................................211106.001061042000000000000000
...................................................................................................................................................TTTGTGACCGACACTAACGGGTG........................................................................................................................................................23189.0089824120000000000000
...................................................................................................................................................TTTGTGACCGACACTAACGT...........................................................................................................................................................20184.0084794100000000000000
...................................................................................................................................................TTTGTGACCGACACTAAC.............................................................................................................................................................18174.0074702000020000000000
...................................................................................................................................................TTTGTGACCGACACTAACGGGTTT.......................................................................................................................................................24161.0061531040020000001000
......................................................................................................................................................................................................................CTCGTTTTTGCGATCACAAATC......................................................................................22157.00574410100010000100000
...................................................................................................................................................TTTGTGACCGACACTAACGGGTATA......................................................................................................................................................25153.0053490100020000001000
...................................................................................................................................................TTTGTGACCGACACTAACGGT..........................................................................................................................................................21152.0052472030000000000000
..........................................................................................................................................................................ATTGTTTGGTCAC--------------------CAGGA-T--T.............................................................................................................20147.0047398000000000000000
...................................................................................................................................................TTTGTGACCGACACTAACGGGTAG.......................................................................................................................................................24142.0042352020030000000000
..........................................................................................................................................................................ATTGTTTGGTCAC--------------------CAGGA-T--TA............................................................................................................21134.0034293020000000000000
....................................................................................................................................................TTGTGACCGACACTAACGGG..........................................................................................................................................................20129.0029310240010000000000
.....................................................................................................................................................TGTGACCGACACTAACGGGT.........................................................................................................................................................20127.00271410110010000000000
....................................................................................................................................................TTGTGACCGACACTAACGGGC.........................................................................................................................................................21121.0021210000000000000000
...................................................................................................................................................TTTGTGACCGACACTAACGGC..........................................................................................................................................................21118.0018180000000000000000
.......................................................................................................................................................TGACCGACACTAACGGGT.........................................................................................................................................................18116.0016150010000000000000
...................................................................................................................................................TTTGTGACCGACACTAACGGGTAAA......................................................................................................................................................25115.001561020020001003000
....................................................................................................................................................TTGTGACCGACACTAACGGGG.........................................................................................................................................................21114.001490050000000000000
.....................................................................................................................................................TGTGACCGACACTAACGGGTA........................................................................................................................................................21113.0013200110000000000000
...................................................................................................................................................TTTGTGACCGACACTAACGGGTAAC......................................................................................................................................................25113.0013120100000000000000
...................................................................................................................................................TTTGTGACCGACACTAACGGGTATG......................................................................................................................................................25113.0013130000000000000000
...................................................................................................................................................TTTGTGACCGACACTAACGGGAT........................................................................................................................................................23111.0011101000000000000000
...................................................................................................................................................TTTGTGACCGACACTAACGGGTACA......................................................................................................................................................2519.00981000000000000000
...................................................................................................................................................TTTGTGACCGACACTAACGGGTATC......................................................................................................................................................2518.00870010000000000000
...................................................................................................................................................TTTGTGACCGACACTAACGC...........................................................................................................................................................2018.00880000000000000000
...................................................................................................................................................TTTGTGACCGACACTAACT............................................................................................................................................................1918.00880000000000000000
......................................................................................................................................................................................................................CTCGTTTTTGCGATCACAAATCA.....................................................................................2317.00710050010000000000
..................................................................................................................................................TTTTGTGACCGACACTAACGGGT.........................................................................................................................................................2317.00721040000000000000
...................................................................................................................................................TTTGTGACCGACACTAACGGGTAAT......................................................................................................................................................2516.00660000000000000000
...................................................................................................................................................TTTGTGACCGACACTAACGGGGT........................................................................................................................................................2315.00541000000000000000
...................................................................................................................................................TTTGTGACCGACACTAACGCC..........................................................................................................................................................2115.00550000000000000000
..........................................................................................................................................................................ATTGTTTGGTCAC--------------------CAGGA-T--..............................................................................................................1915.00550000000000000000
...................................................................................................................................................TTTGTGACCGACACTAACGA...........................................................................................................................................................2014.00440000000000000000
...................................................................................................................................................TTTGTGACCGACACTAACGGGTACC......................................................................................................................................................2514.00440000000000000000
...................................................................................................................................................TTTGTGACCGACACTAACGGGCT........................................................................................................................................................2314.00440000000000000000
...................................................................................................................................................TTTGTGACCGACACTAACGGTA.........................................................................................................................................................2214.00410010020000000000
.....................................................................................................................................................TGTGACCGACACTAACGGG..........................................................................................................................................................1914.00400040000000000000
....................................................................................................................................................TTGTGACCGACACTAACGGGTT........................................................................................................................................................2213.00330000000000000000
......................................................................................................................................................GTGACCGACACTAACGGGT.........................................................................................................................................................1913.00300010000002000000
...................................................................................................................................................TTTGTGACCGACACTAACGGGTCT.......................................................................................................................................................2413.00330000000000000000
....................................................................................................................................................TTGTGACCGACACTAACGGGA.........................................................................................................................................................2113.00300030000000000000
...................................................................................................................................................TTTGTGACCGACACTAACGGTAT........................................................................................................................................................2313.00330000000000000000
....................................................................................................................................................TTGTGACCGACACTAACG............................................................................................................................................................1813.00300030000000000000
....................................................................................................................................................TTGTGACCGACACTAACGGGTAA.......................................................................................................................................................2313.00300030000000000000
.......................................................................................................................................................................................................................TCGTTTTTGCGATCACAAATC......................................................................................2113.00300030000000000000
......................................................................................................................................................GTGACCGACACTAACGGGTA........................................................................................................................................................2013.00300030000000000000
.................................................................................................................................................................................................................T--TACTCGTTTTTGCGATCACA..........................................................................................2113.00330000000000000000
...................................................................................................................................................TTTGTGACCGACACTAACGGGTCC.......................................................................................................................................................2412.00220000000000000000
.......................................................................................................................................................TGACCGACACTAACGGGTA........................................................................................................................................................1912.00220000000000000000
droSec2
TAA--T----TTTA----------ATATTGTTAGTTT------------------------------TAG-----------------TGACAAATCCT----------------------------------GTGTTGCAGTTTCGTTTTGTGACCGACACTAACGGGTAATTGTTTGATCAC--------------------CAGGA-T--TACTCGTTTTTGCGATCACAAATCATGAAATTGCAGCAAAA-CGCAACAAATATATAGAAAATATA-----------------------------TAGAAAATAATAAGTSizeHit CountTotal NormTotalM054

Female-body		V113

Male-body		V114

Embryo		V115

Head
...................................................................................................................................................TTTGTGACCGACACTAACGGGT.........................................................................................................................................................221150177.001501771619011661141122185
...................................................................................................................................................TTTGTGACCGACACTAACGGGTA........................................................................................................................................................23129058.0029058164036662211967
...................................................................................................................................................TTTGTGACCGACACTAACGGG..........................................................................................................................................................2112414.0024141568343809
...................................................................................................................................................TTTGTGACCGACACTAACGGGTAT.......................................................................................................................................................2412220.00222060421031403
...................................................................................................................................................TTTGTGACCGACACTAACGGGA.........................................................................................................................................................2211832.00183210815201572
...................................................................................................................................................TTTGTGACCGACACTAACGGGTAA.......................................................................................................................................................2411776.0017762957551401
....................................................................................................................................................TTGTGACCGACACTAACGGGT.........................................................................................................................................................2111569.0015691151230395
....................................................................................................................................................TTGTGACCGACACTAACGGGTA........................................................................................................................................................2211166.00116611280038
...................................................................................................................................................TTTGTGACCGACACTAACGG...........................................................................................................................................................201754.00754165251563
...................................................................................................................................................TTTGTGACCGACACTAACGGGC.........................................................................................................................................................221689.0068936520601
...................................................................................................................................................TTTGTGACCGACACTAACGGGTT........................................................................................................................................................231612.00612315260271
...................................................................................................................................................TTTGTGACCGACACTAACG............................................................................................................................................................191482.004825900423
...................................................................................................................................................TTTGTGACCGACACTAACGGT..........................................................................................................................................................211333.003336861258
...................................................................................................................................................TTTGTGACCGACACTAACGGGG.........................................................................................................................................................221291.0029129190243
...................................................................................................................................................TTTGTGACCGACACTAACGGGTAC.......................................................................................................................................................241166.001661371028
.....................................................................................................................................................TGTGACCGACACTAACGGGT.........................................................................................................................................................201132.00132654063
...................................................................................................................................................TTTGTGACCGACACTAACGGGTTT.......................................................................................................................................................241131.001313020081
......................................................................................................................................................................................................................CTCGTTTTTGCGATCACAAATC......................................................................................221126.00126471078
....................................................................................................................................................TTGTGACCGACACTAACGGG..........................................................................................................................................................201107.00107106001
......................................................................................................................................................................................................................CTCGTTTTTGCGATCACAAATCA.....................................................................................23184.0084320151
...................................................................................................................................................TTTGTGACCGACACTAACGT...........................................................................................................................................................20183.00831710056
.....................................................................................................................................................TGTGACCGACACTAACGGGTA........................................................................................................................................................21172.007266105
....................................................................................................................................................TTGTGACCGACACTAACGGGTAT.......................................................................................................................................................23151.005145204
...................................................................................................................................................TTTGTGACCGACACTAACGGTA.........................................................................................................................................................22148.0048340014
.................................................................................................................................................................................................................T--TACTCGTTTTTGCGATCACA..........................................................................................21143.0043260017
...................................................................................................................................................TTTGTGACCGACACTAACGGGTAG.......................................................................................................................................................24139.0039191019
...................................................................................................................................................TTTGTGACCGACACTAACGGGTAAA......................................................................................................................................................25138.003843031
...................................................................................................................................................TTTGTGACCGACACTAACGGGTC........................................................................................................................................................23138.0038171020
.......................................................................................................................................................................................................................TCGTTTTTGCGATCACAAATCA.....................................................................................22135.0035170018
....................................................................................................................................................TTGTGACCGACACTAACGGGG.........................................................................................................................................................21135.003535000
....................................................................................................................................................TTGTGACCGACACTAACGGGTAA.......................................................................................................................................................23132.003226006
..........................................................................................................................................................................ATTGTTTGATCAC--------------------CAGGA-T--TA............................................................................................................21131.003185018
......................................................................................................................................................................................................................CTCGTTTTTGCGATCACAAATCAT....................................................................................24130.003025113
...................................................................................................................................................TTTGTGACCGACACTAACGGA..........................................................................................................................................................21123.002370016
...................................................................................................................................................TTTGTGACCGACACTAACGGGTG........................................................................................................................................................23122.002215106
....................................................................................................................................................TTGTGACCGACACTAACGGGTT........................................................................................................................................................22121.002120001
..........................................................................................................................................................................ATTGTTTGATCAC--------------------CAGGA-T--T.............................................................................................................20120.002002018
.......................................................................................................................................................TGACCGACACTAACGGGT.........................................................................................................................................................18118.001820016
...................................................................................................................................................TTTGTGACCGACACTAACGGGTGT.......................................................................................................................................................24117.001702015
...................................................................................................................................................TTTGTGACCGACACTAACGTA..........................................................................................................................................................21117.001710007
...................................................................................................................................................TTTGTGACCGACACTAACGGGTATA......................................................................................................................................................25116.001630013
......................................................................................................................................................................................................................CTCGTTTTTGCGATCACAAAT.......................................................................................21113.00135008
....................................................................................................................................................TTGTGACCGACACTAACGGGA.........................................................................................................................................................21113.00137006
...................................................................................................................................................TTTGTGACCGACACTAACGGGTAAT......................................................................................................................................................25112.001210011
.................................................................................................................................................................................................................T--TACTCGTTTTTGCGATCAC...........................................................................................20111.00113008
..................................................................................................................................................TTTTGTGACCGACACTAACGGGTA........................................................................................................................................................24111.001111000
.......................................................................................................................................................................................................................TCGTTTTTGCGATCACAAATC......................................................................................21110.00106004
....................................................................................................................................................TTGTGACCGACACTAACGGGTAC.......................................................................................................................................................23110.001010000
...................................................................................................................................................TTTGTGACCGACACTAACGGAA.........................................................................................................................................................2219.0091008
.......................................................................................................................................................................................................................TCGTTTTTGCGATCACAAATCAT....................................................................................2319.0099000
....................................................................................................................................................TTGTGACCGACACTAACGG...........................................................................................................................................................1918.0088000
..................................................................................................................................................TTTTGTGACCGACACTAACGGGT.........................................................................................................................................................2318.0086002
....................................................................................................................................................TTGTGACCGACACTAACG............................................................................................................................................................1818.0087001
.....................................................................................................................................................TGTGACCGACACTAACGGG..........................................................................................................................................................1917.0076001
......................................................................................................................................................GTGACCGACACTAACGGGTA........................................................................................................................................................2017.0076001
......................................................................................................................................................GTGACCGACACTAACGGGT.........................................................................................................................................................1917.0076001
...................................................................................................................................................TTTGTGACCGACACTAACGGTAT........................................................................................................................................................2317.0074102
...................................................................................................................................................TTTGTGACCGACACTAACGGGTACA......................................................................................................................................................2516.0061005
...................................................................................................................................................TTTGTGACCGACACTAACGGGTAAC......................................................................................................................................................2515.0051004
.....................................................................................................................................TGTTGCAGTTTCGTTTTGTGA........................................................................................................................................................................2115.0050104
...................................................................................................................................................TTTGTGACCGACACTAAC.............................................................................................................................................................1815.0055000
...................................................................................................................................................TTTGTGACCGACACTAACGGGTATC......................................................................................................................................................2515.0051103
...................................................................................................................................................TTTGTGACCGACACTAACGGGTAATT.....................................................................................................................................................2615.0051004
.....................................................................................................................................................TGTGACCGACACTAACGGGTAT.......................................................................................................................................................2214.0043100
.......................................................................................................................................................................................................................TCGTTTTTGCGATCACAAAT.......................................................................................2014.0042002
.................................................................................................................................................GTTTTGTGACCGACACTAACGGGT.........................................................................................................................................................2414.0044000
...................................................................................................................................................TTTGTGACCGACACTAACGGGTCT.......................................................................................................................................................2414.0041003
...................................................................................................................................................TTTGTGACCGACACTAACGGGTACC......................................................................................................................................................2513.0032001
.....................................................................................................................................................TGTGACCGACACTAACGGGTAA.......................................................................................................................................................2213.0031002
droYak3
TTG--AT---------------------------T--------------------------------TTA-----------------TGCCGAATCCT----------------------------------GTGTTGCAGTTTCGTTTTGTGACCGACACTAACGGGTAATTGTTTGGTCGC--------------------CAGGA-T--TACTCGTTTTTGCGATCACAAATCATGAAATTGCAGCAAAA-CGCAACAAAGTCGTGAAA--------------------------------------------------SizeHit CountTotal NormTotalM026

Head		M043

Female-body		M056

Embryo		V046

Embryo		V052

Head		V058

Head		V120

Male-body		SRR1275488

Male larvae		SRR1275486

Male prepupae		SRR1275484

Male prepupae		GSM1528802

follicle cells
...................................................................................................................................................TTTGTGACCGACACTAACGGGT.........................................................................................................................................................221116498.00116498105107685803801058968128400033
...................................................................................................................................................TTTGTGACCGACACTAACGGGTA........................................................................................................................................................23120989.00209891800823111434665071030000
...................................................................................................................................................TTTGTGACCGACACTAACGGG..........................................................................................................................................................2113174.003174106397700467657100000
...................................................................................................................................................TTTGTGACCGACACTAACGGGTAT.......................................................................................................................................................2412970.002970901700010551637180000
...................................................................................................................................................TTTGTGACCGACACTAACGGGC.........................................................................................................................................................2212740.002740143327002091061100000
...................................................................................................................................................TTTGTGACCGACACTAACGGGTAA.......................................................................................................................................................2411773.0017733112000614100260000
...................................................................................................................................................TTTGTGACCGACACTAACGGGA.........................................................................................................................................................2211335.001335584300451772110000
...................................................................................................................................................TTTGTGACCGACACTAACGGGG.........................................................................................................................................................2211243.001243625330017840610000
....................................................................................................................................................TTGTGACCGACACTAACGGGT.........................................................................................................................................................211951.0095122720006713840000
...................................................................................................................................................TTTGTGACCGACACTAACG............................................................................................................................................................191886.00886721450029337600000
....................................................................................................................................................TTGTGACCGACACTAACGGGTA........................................................................................................................................................221742.0074267140071500000
...................................................................................................................................................TTTGTGACCGACACTAACGG...........................................................................................................................................................201668.00668195215009215970000
...................................................................................................................................................TTTGTGACCGACACTAACGGGTT........................................................................................................................................................231375.003759726006518520000
...................................................................................................................................................TTTGTGACCGACACTAACGGGTC........................................................................................................................................................231230.0023028003218710000
...................................................................................................................................................TTTGTGACCGACACTAACGGGTAC.......................................................................................................................................................241174.00174225800326200000
...................................................................................................................................................TTTGTGACCGACACTAACGGGTAG.......................................................................................................................................................241167.00167432400386200000
....................................................................................................................................................TTGTGACCGACACTAACGGG..........................................................................................................................................................20197.0097194001100000
...................................................................................................................................................TTTGTGACCGACACTAACGGT..........................................................................................................................................................21180.008011600204030000
...................................................................................................................................................TTTGTGACCGACACTAACGGGTTT.......................................................................................................................................................24167.00673300223810000
...................................................................................................................................................TTTGTGACCGACACTAACGT...........................................................................................................................................................20166.00665100193920000
...................................................................................................................................................TTTGTGACCGACACTAACGGGTAAA......................................................................................................................................................25158.00581100164000000
...................................................................................................................................................TTTGTGACCGACACTAACGGGTG........................................................................................................................................................23156.005614600132300000
.....................................................................................................................................................TGTGACCGACACTAACGGGT.........................................................................................................................................................20149.0049230008900000
...................................................................................................................................................TTTGTGACCGACACTAACGGGTCT.......................................................................................................................................................24148.0048000074100000
.....................................................................................................................................................TGTGACCGACACTAACGGGTA........................................................................................................................................................21138.0038036002000000
...................................................................................................................................................TTTGTGACCGACACTAACGGTC.........................................................................................................................................................22134.0034000043000000
......................................................................................................................................................................................................................CTCGTTTTTGCGATCACAAATCA.....................................................................................23133.0033024001800000
...................................................................................................................................................TTTGTGACCGACACTAACGGAC.........................................................................................................................................................22132.0032240000800000
...................................................................................................................................................TTTGTGACCGACACTAACGGGTAAT......................................................................................................................................................25131.00310300121600000
..........................................................................................................................................................................ATTGTTTGGTCGC--------------------CAGGA-T--TA............................................................................................................21129.0029207002000000
..................................................................................................................................................TTTTGTGACCGACACTAACGGGT.........................................................................................................................................................23127.0027123001200000
..................................................................................................................................................TTTTGTGACCGACACTAACGGGTA........................................................................................................................................................24124.0024024000000000
...................................................................................................................................................TTTGTGACCGACACTAACGGGCT........................................................................................................................................................23122.00221000101100000
....................................................................................................................................................TTGTGACCGACACTAACGG...........................................................................................................................................................19122.0022022000000000
......................................................................................................................................................................................................................CTCGTTTTTGCGATCACAAATC......................................................................................22120.0020215000300000
...................................................................................................................................................TTTGTGACCGACACTAACGGTG.........................................................................................................................................................22118.0018000021600000
...................................................................................................................................................TTTGTGACCGACACTAACGGA..........................................................................................................................................................21118.001850007600000
....................................................................................................................................................TTGTGACCGACACTAACGGGTAT.......................................................................................................................................................23117.001719003400000
....................................................................................................................................................TTGTGACCGACACTAACGGGTAA.......................................................................................................................................................23117.0017012001400000
......................................................................................................................................................................................................................CTCGTTTTTGCGATCACAAATCAT....................................................................................24117.0017015000200000
..........................................................................................................................................................................ATTGTTTGGTCGC--------------------CAGGA-T--T.............................................................................................................20115.0015131000100000
...................................................................................................................................................TTTGTGACCGACACTAACGGTA.........................................................................................................................................................22115.0015110001300000
...................................................................................................................................................TTTGTGACCGACACTAACGGGTGT.......................................................................................................................................................24113.001330002800000
......................................................................................................................................................GTGACCGACACTAACGGGT.........................................................................................................................................................19113.001319000300000
.................................................................................................................................................................................................................T--TACTCGTTTTTGCGATCACA..........................................................................................21110.001012003400000
...................................................................................................................................................TTTGTGACCGACACTAACGGGCC........................................................................................................................................................23110.001000001900000
......................................................................................................................................................GTGACCGACACTAACGGGTA........................................................................................................................................................20110.0010010000000000
...................................................................................................................................................TTTGTGACCGACACTAACGGGTATA......................................................................................................................................................25110.001000004420000
...................................................................................................................................................TTTGTGACCGACACTAACGGC..........................................................................................................................................................2119.00930003300000
droEre2
GG----------------------------------------------------------------------------------------CCAATCCT----------------------------------GTGTTGCAGTTTCGTTTTGTGACCGACACTAACGGGTAATTGTTTGGCCGC--------------------CAGGA-T--TACTCGTTTTTGCGATCACAAATCATGAAATTGCAGCAAAA-CGCAACGAAGTCGTGAAGCCAGTGAAAA----------------------------------ATAATASizeHit CountTotal NormTotalM055

Female-body		M057

Embryo		V060

Head		V040

Embryo		V107

Male-body		V108

Head		GSM1528801

follicle cells
...................................................................................................................................................TTTGTGACCGACACTAACGGGT.........................................................................................................................................................221251324.00251324349934541314215871406032
...................................................................................................................................................TTTGTGACCGACACTAACGGGTA........................................................................................................................................................23168279.006827932830012598016482114261
...................................................................................................................................................TTTGTGACCGACACTAACGGGTAA.......................................................................................................................................................2416945.00694561202696117534574
...................................................................................................................................................TTTGTGACCGACACTAACGGG..........................................................................................................................................................2116922.00692245191597012416810
...................................................................................................................................................TTTGTGACCGACACTAACGGGTAT.......................................................................................................................................................2414389.00438973101364032019740
....................................................................................................................................................TTGTGACCGACACTAACGGGT.........................................................................................................................................................2113321.003321258901370315640
....................................................................................................................................................TTGTGACCGACACTAACGGGTA........................................................................................................................................................2212559.002559245303002740
...................................................................................................................................................TTTGTGACCGACACTAACGGGA.........................................................................................................................................................2212112.0021122130494023611690
...................................................................................................................................................TTTGTGACCGACACTAACGGGC.........................................................................................................................................................2211552.00155267053601188310
...................................................................................................................................................TTTGTGACCGACACTAACGG...........................................................................................................................................................2011358.00135828501090389260
...................................................................................................................................................TTTGTGACCGACACTAACG............................................................................................................................................................191984.0098411601300217170
...................................................................................................................................................TTTGTGACCGACACTAACGGGG.........................................................................................................................................................221869.008696202320735020
...................................................................................................................................................TTTGTGACCGACACTAACGGGTT........................................................................................................................................................231840.0084024602040253569
...................................................................................................................................................TTTGTGACCGACACTAACGGGTC........................................................................................................................................................231452.00452340159022570
...................................................................................................................................................TTTGTGACCGACACTAACGGT..........................................................................................................................................................211429.00429980170242900
....................................................................................................................................................TTGTGACCGACACTAACGGG..........................................................................................................................................................201373.00373369000040
...................................................................................................................................................TTTGTGACCGACACTAACGGGTAC.......................................................................................................................................................241304.0030418507403420
.....................................................................................................................................................TGTGACCGACACTAACGGGT.........................................................................................................................................................201252.0025216001502750
...................................................................................................................................................TTTGTGACCGACACTAACGGGTAG.......................................................................................................................................................241238.0023886027071180
...................................................................................................................................................TTTGTGACCGACACTAACGGGTG........................................................................................................................................................231199.0019927027001450
...................................................................................................................................................TTTGTGACCGACACTAACGGGTAAA......................................................................................................................................................251186.0018612046061220
.....................................................................................................................................................TGTGACCGACACTAACGGGTA........................................................................................................................................................211138.00138123050190
...................................................................................................................................................TTTGTGACCGACACTAACGGGTTT.......................................................................................................................................................241126.0012634010019630
...................................................................................................................................................TTTGTGACCGACACTAACGT...........................................................................................................................................................201123.0012324010012770
......................................................................................................................................................................................................................CTCGTTTTTGCGATCACAAATC......................................................................................221101.00101280708580
......................................................................................................................................................................................................................CTCGTTTTTGCGATCACAAATCA.....................................................................................23186.0086280301540
....................................................................................................................................................TTGTGACCGACACTAACGGGTAA.......................................................................................................................................................23182.00824001200300
...................................................................................................................................................TTTGTGACCGACACTAACGGTA.........................................................................................................................................................22181.0081420701310
....................................................................................................................................................TTGTGACCGACACTAACGGGG.........................................................................................................................................................21181.008177010030
...................................................................................................................................................TTTGTGACCGACACTAACGGGTAAT......................................................................................................................................................25180.0080602913410
....................................................................................................................................................TTGTGACCGACACTAACGGGTAT.......................................................................................................................................................23160.006055020030
..................................................................................................................................................TTTTGTGACCGACACTAACGGGT.........................................................................................................................................................23150.0050380101100
..................................................................................................................................................TTTTGTGACCGACACTAACGGGTA........................................................................................................................................................24149.004948010000
...................................................................................................................................................TTTGTGACCGACACTAACGGGTCT.......................................................................................................................................................24146.0046001200340
...................................................................................................................................................TTTGTGACCGACACTAACGTA..........................................................................................................................................................21137.0037260000110
.......................................................................................................................................................TGACCGACACTAACGGGT.........................................................................................................................................................18131.0031100002190
.................................................................................................................................................................................................................T--TACTCGTTTTTGCGATCACA..........................................................................................21127.002790120060
....................................................................................................................................................TTGTGACCGACACTAACGG...........................................................................................................................................................19126.002625000010
...................................................................................................................................................TTTGTGACCGACACTAACGGA..........................................................................................................................................................21124.0024401000100
...................................................................................................................................................TTTGTGACCGACACTAACGGGTATA......................................................................................................................................................25123.002330103160
...................................................................................................................................................TTTGTGACCGACACTAACGGGTGT.......................................................................................................................................................24123.002300501170
.......................................................................................................................................................................................................................TCGTTTTTGCGATCACAAATC......................................................................................21122.002216000150
....................................................................................................................................................TTGTGACCGACACTAACGGGA.........................................................................................................................................................21121.002115010050
.....................................................................................................................................................TGTGACCGACACTAACGGG..........................................................................................................................................................19121.002121000000
......................................................................................................................................................................................................................CTCGTTTTTGCGATCACAAATCAT....................................................................................24121.002111000190
......................................................................................................................................................GTGACCGACACTAACGGGTA........................................................................................................................................................20118.001815000120
....................................................................................................................................................TTGTGACCGACACTAACGGGTT........................................................................................................................................................22116.001616000000
...................................................................................................................................................TTTGTGACCGACACTAACGGTC.........................................................................................................................................................22115.001510140000
...................................................................................................................................................TTTGTGACCGACACTAACGGGTACA......................................................................................................................................................25114.00145020070
......................................................................................................................................................GTGACCGACACTAACGGGT.........................................................................................................................................................19114.00146030050
...................................................................................................................................................TTTGTGACCGACACTAACGGGTATC......................................................................................................................................................25113.00130040180
....................................................................................................................................................TTGTGACCGACACTAACGGGTAC.......................................................................................................................................................23112.001212000000
....................................................................................................................................................TTGTGACCGACACTAACG............................................................................................................................................................18112.00129000030
...................................................................................................................................................TTTGTGACCGACACTAACGGGTAAG......................................................................................................................................................25111.00112040050
...................................................................................................................................................TTTGTGACCGACACTAACGGCA.........................................................................................................................................................22111.001100110000

Generated: 10/20/2015 at 07:31 PM