ID:

dgr-mir-263b

 Coordinate:

scaffold_15110:24319810-24319884 -

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

3pUTR

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-36.0 -35.4 -35.4

Flybase annnotation

utr3 [utr3_minus_5839]; pre_miRNA [Dgri\mir-263b-RM]; miRNA [Dgri\miR-263b-RA]

No Repeatable elements found

Sense Strand Reads

TAAGTCTAGAAATGATCAACTCACTGAAAAATATTGTGGAAAGCTACTGCCATTACATCTTGGCACTGGGAGAATTCACAGTTGGTTATATAATATTCTGTGGTTCTGCGGGTGCCAAACTGTAATGTGTGGACATAGAAACAACCTGAAAAACGCAACATATCAAATAATTTAA

*******************************************...(((((((((((..((((((((...(((((.(((((...(((....)))...))))))))))...))))))))..))))))).))))....*************************************** 		Read size # Mismatch Hit Count Total Norm Total V109

male body		 M041

female body
..........................................................CTTGGCACTGGGAGAATTCACA............................................................................................... 22 0 1 1443.00 1443 1400 43
..........................................................CTTGGCACTGGGAGAATTCA................................................................................................. 20 0 1 834.00 834 796 38
..........................................................CTTGGCACTGGGAGAATTCACAG.............................................................................................. 23 0 1 393.00 393 349 44
..........................................................CTTGGCACTGGGAGAATTCAC................................................................................................ 21 0 1 239.00 239 203 36
..........................................................CTTGGCACTGGGAGAATTC.................................................................................................. 19 0 1 58.00 58 57 1
..........................................................CTTGGCACTGGGAGAATACACA............................................................................................... 22 1 1 14.00 14 14 0
...........................................................TTGGCACTGGGAGAATTCA................................................................................................. 19 0 1 13.00 13 8 5
..........................................................CTTGGCACTGGGAGAATCCACA............................................................................................... 22 1 1 12.00 12 12 0
...........................................................TTGGCACTGGGAGAATTCACA............................................................................................... 21 0 1 12.00 12 7 5
..........................................................CTTGGCCCTGGGAGAATTCA................................................................................................. 20 1 1 9.00 9 9 0
..........................................................CTTGGCACTGGGAGAATCCA................................................................................................. 20 1 1 8.00 8 8 0
...........................................................TTGGCACTGGGAGAATTCACAG.............................................................................................. 22 0 1 8.00 8 1 7
..........................................................CTTGGCACCGGGAGAATTCA................................................................................................. 20 1 1 7.00 7 7 0
...................................................................................................GTGGTTCTGCGGGTGCCAAACT...................................................... 22 0 1 7.00 7 0 7
..........................................................CTTGGCACTGGGAGAATTCACAGT............................................................................................. 24 0 1 7.00 7 6 1
..........................................................CTTGGCACTGGGAGAATGCACA............................................................................................... 22 1 1 7.00 7 7 0
..........................................................CTTGGAACTGGGAGAATTCACA............................................................................................... 22 1 1 6.00 6 6 0
..........................................................CTTGGCACTGGGAGAATTCACT............................................................................................... 22 1 1 5.00 5 4 1
..........................................................CTTGGCACCGGGAGAATTCACA............................................................................................... 22 1 1 5.00 5 5 0
..........................................................CTTGGCACTGGGAGAATCCACAG.............................................................................................. 23 1 1 5.00 5 5 0
..........................................................CTTGGCACTGGGAGAATACA................................................................................................. 20 1 1 5.00 5 5 0
..........................................................CTTGGCCCTGGGAGAATTCACA............................................................................................... 22 1 1 5.00 5 5 0
...........................................................TTGGCACTGGGAGAATTCAC................................................................................................ 20 0 1 4.00 4 1 3
..........................................................CTTGGCACTGGGAGAATTCACAT.............................................................................................. 23 1 1 4.00 4 4 0
..........................................................CTCGGCACTGGGAGAATTCACAG.............................................................................................. 23 1 1 4.00 4 4 0
..........................................................CTTGGCACTGGGAGAATTCACG............................................................................................... 22 1 1 4.00 4 4 0
..........................................................CTTCGCACTGGGAGAATTCACA............................................................................................... 22 1 1 4.00 4 4 0
..........................................................CTCGGCACTGGGAGAATTCACA............................................................................................... 22 1 1 4.00 4 4 0
..........................................................CTTGGCACAGGGAGAATTCA................................................................................................. 20 1 1 3.00 3 3 0
..........................................................CTTGGAACTGGGAGAATTCACAG.............................................................................................. 23 1 1 3.00 3 3 0
..........................................................CTTGGCACTGGGAGAATACAC................................................................................................ 21 1 1 3.00 3 3 0
..........................................................CTTGGCACTGGGAGAATTT.................................................................................................. 19 1 1 3.00 3 2 1
..........................................................CTCGGCACTGGGAGAATTCAC................................................................................................ 21 1 1 3.00 3 3 0
..........................................................CTTGGCACTGGGAGAATGCAC................................................................................................ 21 1 1 3.00 3 3 0
..........................................................CTTGGAACTGGGAGAATTCA................................................................................................. 20 1 1 3.00 3 3 0
..........................................................CTTGGTACTGGGAGAATTCACA............................................................................................... 22 1 1 3.00 3 3 0
..........................................................CTTGGCACTGGGAGAATTCACAA.............................................................................................. 23 1 1 3.00 3 3 0
..........................................................CTTGGCACTGGGAGAATGCA................................................................................................. 20 1 1 3.00 3 3 0
..........................................................CTTCGCACTGGGAGAATTCA................................................................................................. 20 1 1 2.00 2 2 0
..........................................................CTTGGGACTGGGAGAATTCACA............................................................................................... 22 1 1 2.00 2 2 0
..........................................................CTTGGCACTGCGAGAATTCACAG.............................................................................................. 23 1 1 2.00 2 2 0
..........................................................CTTGGCACTGGGAGAATTCACC............................................................................................... 22 1 1 2.00 2 2 0
..........................................................CTTGGCACTGGGCGAATTCA................................................................................................. 20 1 1 2.00 2 2 0
..........................................................CTTGGCACTGGAAGAATTCACA............................................................................................... 22 1 1 2.00 2 2 0
..........................................................CTTGGGACTGGGAGAATTCACAG.............................................................................................. 23 1 1 2.00 2 2 0
..........................................................CTTGGCACTGGGAGAATCCAC................................................................................................ 21 1 1 2.00 2 2 0
..........................................................CCTGGCACTGGGAGAATTCACA............................................................................................... 22 1 1 2.00 2 2 0
..........................................................CTTGGCACTGGGAGAACTCAC................................................................................................ 21 1 1 2.00 2 1 1
..........................................................CTTGGCACCGGGAGAATTCAC................................................................................................ 21 1 1 2.00 2 2 0
..........................................................CTTGGCTCTGGGAGAATTCA................................................................................................. 20 1 1 2.00 2 2 0
..........................................................CTTGGGACTGGGAGAATTCA................................................................................................. 20 1 1 2.00 2 2 0
..........................................................CTTGGCACTGGGAGAATTCACAC.............................................................................................. 23 1 1 2.00 2 2 0
...........................................................CTTGCACTGGGAGAATTCACA............................................................................................... 21 2 1 2.00 2 2 0
..........................................................CTTGGCACTGGGAGAATTCAA................................................................................................ 21 1 1 2.00 2 1 1
..........................................................CTTGGCACAGGGAGAATTCACA............................................................................................... 22 1 1 2.00 2 2 0
............................................................TGGCACTGGGAGAATTCACAG.............................................................................................. 21 0 1 2.00 2 0 2
..........................................................CTTGGCACTGGGAGAATTCACAGA............................................................................................. 24 1 1 2.00 2 2 0
..........................................................CTTGGCACTGGGAGAATACACAG.............................................................................................. 23 1 1 2.00 2 2 0
..........................................................CTAGGCACTGGGAGAATTCACA............................................................................................... 22 1 1 2.00 2 2 0
...................................................................................................GTGGTTCTGCGGGTGCCAAAC....................................................... 21 0 1 1.00 1 0 1
..........................................................CTTGGCACTGCGAGAATTCACA............................................................................................... 22 1 1 1.00 1 1 0
..........................................................CTTGACACTGGGAGAATCCACA............................................................................................... 22 2 1 1.00 1 1 0
..........................................................CTTGGCACTAGGAGACTTCACA............................................................................................... 22 2 1 1.00 1 1 0
..........................................................CTTGGCACTGGAAGAATTCA................................................................................................. 20 1 1 1.00 1 1 0
..........................................................CTTGGCACTGGGAGAATTCACAAA............................................................................................. 24 2 1 1.00 1 1 0
..........................................................TCTGGCACTGGGAGAATTCACAG.............................................................................................. 23 2 1 1.00 1 1 0
..........................................................CTTGGAACTGGGAGAATTC.................................................................................................. 19 1 1 1.00 1 1 0
...................................................................................................GTGGTTCTGCGGGTGCCAAACTT..................................................... 23 1 1 1.00 1 0 1
..........................................................CTTGGCACTGGGAGAAATCACAG.............................................................................................. 23 1 1 1.00 1 1 0
..........................................................CTTGCCACTGGGAGAATTCACA............................................................................................... 22 1 1 1.00 1 1 0
..........................................................CTTGGCACTGTGAGAATTCA................................................................................................. 20 1 1 1.00 1 1 0
..........................................................CTTGGCACTGGGAGAGTTCACA............................................................................................... 22 1 1 1.00 1 1 0
..........................................................CTTGGGACTGGGAGAATTCAC................................................................................................ 21 1 1 1.00 1 1 0
..........................................................CTAAGCACTGGGAGAATTCACA............................................................................................... 22 2 1 1.00 1 1 0
..........................................................CTTTGCACTGGGAGAATTCAAA............................................................................................... 22 2 1 1.00 1 1 0
..........................................................CTCGGCACTGGGAGAATTCA................................................................................................. 20 1 1 1.00 1 1 0
..........................................................CTTGGCACTGGGAGAATTCACAGTAAGG......................................................................................... 28 3 1 1.00 1 0 1
..........................................................CTTGGCACTGAGAGAATTCA................................................................................................. 20 1 1 1.00 1 1 0
..........................................................CTGGGCACTGGGAGAATTCA................................................................................................. 20 1 1 1.00 1 1 0
..........................................................CTTGGCACTGGGAGAATTCAAAG.............................................................................................. 23 1 1 1.00 1 1 0
..........................................................CTTGGCAATGGGAGAATTCACAG.............................................................................................. 23 1 1 1.00 1 1 0
..........................................................CTTGGCACTGTGAGAATTCACAA.............................................................................................. 23 2 1 1.00 1 1 0
..........................................................CTTGGCACTTGGAGAATTCACAG.............................................................................................. 23 1 1 1.00 1 1 0
..........................................................CTTGGCACTGGGAGAATTCGCAG.............................................................................................. 23 1 1 1.00 1 1 0
...........................................................CTTGCACTGGGAGAATTCAC................................................................................................ 20 2 1 1.00 1 1 0
..........................................................CTTCGCACTGGGAGAATTCACAG.............................................................................................. 23 1 1 1.00 1 1 0
...........................................................TTGGCACTGGGAGAATTC.................................................................................................. 18 0 1 1.00 1 0 1
..........................................................CTTGTCACTGGGAGAATTCACA............................................................................................... 22 1 1 1.00 1 1 0
..........................................................CTTGGCACTGGGGGAATTCA................................................................................................. 20 1 1 1.00 1 1 0
..........................................................CTTGGCACCGGGAGAATGCACA............................................................................................... 22 2 1 1.00 1 1 0
..........................................................CTTGGCACTGGGAGGATTCACA............................................................................................... 22 1 1 1.00 1 1 0
..........................................................TTTGGCACTGGGAGAATTCA................................................................................................. 20 1 1 1.00 1 1 0
..........................................................CTTGGCACAGGGAGAATTCAC................................................................................................ 21 1 1 1.00 1 1 0
..........................................................CTTGGCACTGGGAGAATACACAA.............................................................................................. 23 2 1 1.00 1 1 0
..........................................................CTTGGCACTGGGAGAATTCC................................................................................................. 20 1 1 1.00 1 1 0
..........................................................CTTGGCACTGGGAGACTTCACA............................................................................................... 22 1 1 1.00 1 1 0
..........................................................ATTGGAACTGGGAGAATTCACAG.............................................................................................. 23 2 1 1.00 1 1 0
..........................................................CTTGGCTCTGGGAGAATTCACAG.............................................................................................. 23 1 1 1.00 1 1 0
..........................................................ATTGGCACTGGGAGAATTCA................................................................................................. 20 1 1 1.00 1 1 0
..........................................................CTTGACACTGGGAGAATTCAC................................................................................................ 21 1 1 1.00 1 1 0
....................................................ATCCTTCTTGGCACTGGGAGAATTCA................................................................................................. 26 3 1 1.00 1 0 1
..........................................................CTTGGCACTGGGAGTATTCAC................................................................................................ 21 1 1 1.00 1 1 0
..........................................................CTTGGCGCTGGGAGAATTCACA............................................................................................... 22 1 1 1.00 1 1 0
..........................................................CTTGGCACTGCGAGAATACACA............................................................................................... 22 2 1 1.00 1 1 0
..........................................................CTGGGCACTGGGAGAATTC.................................................................................................. 19 1 1 1.00 1 1 0
...........................................................TTGGCACTGGGAGAATTCACAGT............................................................................................. 23 0 1 1.00 1 0 1
..........................................................CTTAGCACTGGGAGAATTCA................................................................................................. 20 1 1 1.00 1 1 0
..........................................................CTAGGCACTGGGAGAATTC.................................................................................................. 19 1 1 1.00 1 1 0
..........................................................CTTGTCACTGGGAGAATTCACAG.............................................................................................. 23 1 1 1.00 1 1 0
..........................................................CTGGGCACTGGGAGAATTCACA............................................................................................... 22 1 1 1.00 1 1 0
..........................................................CTTGGCACTGGGAGAACTCACA............................................................................................... 22 1 1 1.00 1 1 0
..........................................................CTTAGCACTGGGAGAATTCAC................................................................................................ 21 1 1 1.00 1 1 0
..........................................................CTTGACACTGGGAGAATTCACA............................................................................................... 22 1 1 1.00 1 1 0
..........................................................CTTGGCACTGGGAGAATTTACA............................................................................................... 22 1 1 1.00 1 1 0
..........................................................CTTGGCACTGGGAGAATTCCCA............................................................................................... 22 1 1 1.00 1 1 0
..........................................................CTTGGCACGGGGAGAATTCACA............................................................................................... 22 1 1 1.00 1 1 0
..........................................................TTTGGCACTGGGAGAATTCACA............................................................................................... 22 1 1 1.00 1 1 0
..........................................................CTTGGCCCTGGGAGAATTCAC................................................................................................ 21 1 1 1.00 1 1 0
..........................................................CTTGGCTCTGGGAGAATTCACAGT............................................................................................. 24 1 1 1.00 1 1 0
....................................................................................................TGGTTCTGCGGGTGCCAAACT...................................................... 21 0 1 1.00 1 0 1
..........................................................CTTGGCACTGGTAGAATTCACAG.............................................................................................. 23 1 1 1.00 1 1 0
...........................................................TTGGCATTGGGAGAATTCACA............................................................................................... 21 1 1 1.00 1 1 0
..........................................................CTTGGTACTGGGAGAATTCA................................................................................................. 20 1 1 1.00 1 1 0
..........................................................CTCGGCGCTGGGAGAATTCACA............................................................................................... 22 2 1 1.00 1 1 0
............................................................TGGCACTGGGAGAATTCACA............................................................................................... 20 0 1 1.00 1 0 1
..........................................................CTTGGCACTAGGAGAATTCACA............................................................................................... 22 1 1 1.00 1 1 0
..........................................................CTTGGCACTGGGAGAATTCCC................................................................................................ 21 1 1 1.00 1 1 0
...........................................................TTGGCAGTGGGAGAATTCACA............................................................................................... 21 1 1 1.00 1 1 0
..........................................................CTTGGCTCTGGGAGAATTCACA............................................................................................... 22 1 1 1.00 1 1 0
..........................................................CTTTGCACTGGGAGAATTCAC................................................................................................ 21 1 1 1.00 1 1 0
..................................................................................................TGTGGTTCTGCGGGTGCCAAACT...................................................... 23 0 1 1.00 1 0 1
..........................................................CTTAGCACTGGGAGAATTCACA............................................................................................... 22 1 1 1.00 1 1 0
..........................................................CTTGGCACTGGGAGAATTAA................................................................................................. 20 1 2 1.00 2 2 0
..........................................................CTTGGCACTGGGAGAATTCAAA............................................................................................... 22 1 1 1.00 1 1 0
..........................................................CTTTGCACTGGGAGAATTCA................................................................................................. 20 1 1 1.00 1 1 0
..........................................................CTTGGAACTGGGAGAATTCAC................................................................................................ 21 1 1 1.00 1 1 0
..........................................................CTTGGCACTGGCAGAATTCA................................................................................................. 20 1 1 1.00 1 1 0
..........................................................CTTGGCACTGGGAGCATTCA................................................................................................. 20 1 1 1.00 1 1 0
..........................................................CTTGGCACTGGGAGAACTCA................................................................................................. 20 1 1 1.00 1 1 0
..........................................................CTAGGCACTGGGAGACTTCACAG.............................................................................................. 23 2 1 1.00 1 1 0
.........................................................TCTTGGCACTGGGAGAATTCACAG.............................................................................................. 24 0 1 1.00 1 0 1
.............................................................GGCACTGGGAGAATTCAC................................................................................................ 18 0 1 1.00 1 0 1
............................................................TGGCACTGGGAGAATTCA................................................................................................. 18 0 1 1.00 1 1 0
..........................................................ACTGGCACTGGGAGAATTCA................................................................................................. 20 2 2 0.50 1 1 0
..........................................................CTTGGCACTGGTAGAATTCA................................................................................................. 20 1 2 0.50 1 1 0
...........................................................CTTGCACTGGGAGAATTGAC................................................................................................ 20 3 5 0.20 1 1 0

Anti-sense strand reads

ATTCAGATCTTTACTAGTTGAGTGACTTTTTATAACACCTTTCGATGACGGTAATGTAGAACCGTGACCCTCTTAAGTGTCAACCAATATATTATAAGACACCAAGACGCCCACGGTTTGACATTACACACCTGTATCTTTGTTGGACTTTTTGCGTTGTATAGTTTATTAAATT

***************************************...(((((((((((..((((((((...(((((.(((((...(((....)))...))))))))))...))))))))..))))))).))))....******************************************* 		Read size # Mismatch Hit Count Total Norm Total M041

female body

 V109

male body
..............................................................CGTGACCCTCTTTAGTGTAAC............................................................................................ 21 3 2 0.50 1 0 1
.............................................................TCGTGACCCTCTTTAGTGT............................................................................................... 19 2 2 0.50 1 1 0
..........................................CGATGATGGTAGTGTAAA................................................................................................................... 18 3 20 0.05 1 1 0

Re-alignment of all predicted orthologs

Species Coordinate ID Type Alignment
droGri2 scaffold_15110:24319760-24319934 - dgr-mir-263b Known_mirbase TAAGTC--TAGAAATG---ATCAAC-TCACTGAAA---------AATATTG-------T-----------------------------------------------------G------------GAAAG---CTACTGCCATTACATCTTGGCACTGGGAGAATTCACAGTTGGTTATAT---AATATTCTGTGGTTCTGCGGGTGCC-AAACTGTAATGTGTGGACATAGAAACAAC--CTGAAA-AACGCAACATA---T-C---AAATA------------ATTTAA
droVir3 scaffold_13049:24412503-24412666 - dvi-mir-263b Known_mirbase TAAGTCTACTC--TTGATCAACTCG-CC---AGAG---------AATATTG-------TGTTCTT---------------------------------CTACGGAAA-GCA----------------GAG---CTACTGCCATTTCATCTTGGCACTGGGAGAATTCACAGTCGATTACAT---AATATTCTGTGGTTCTGCGGGTGCC-AAAATGTAATGTGTGGACCAAGACAG--C--CTGAAA--------------------------------------------
droWil2 scf2_1100000004540:1452378-1452520 + dwi-mir-263b Known_mirbase CTTAAATTCTAAGAA------------------AG---------ATTT-TC-----TGTGTGTGT-TT------------------------------GAACGAAAA-TAA----------------AGT---CTGCTCACAATGCATCTTGGCACTGGGAGAATTCACAGTTGATTCTTATTCGATATTCTGTGGTTCTGCGGGTGCC-AAAATCTAATGTTTGAGC---------------------------------------------------------------
dp5 XR_group6:3597997-3598230 - dps-mir-263b Known_mirbase TAAGCC--CATAGATGATGGTCTTC-GC---TTAG---------GCTTAGGAAAAG--TG----T-TTAGCTTAGTTTAGCTTAGTTTGAGACAACGACTACGGCG-ATCG----------------TTA---TTGCTGGCATTGGCTCTTGGCACTGGGAGAATTCACAGTTGGTTTCCA---TATATTCTGTGGTTCTGCGGGTGCC-AAAATCGAATGTTCGGCTCGAAACAG--CAGCTGAAA-A---GTTTC---AGCCT--TAACAAATATATATGTTCATATAT
droPer2 scaffold_9:1894029-1894137 - dpe-mir-263b Known_mirbase T--------------------------------------------------------------------------------------------------------------------------------------GCTGGCATTGGCTCTTGGCACTGGGAGAATTCACAGTTGGTTTTCA---TATATTCTGTGGTTCTGCGGGTGCCCAAAATCGAATGTTCGGCTCGAAACAG--CAGCTGAAA-A------------------------------------------
droAna3 scaffold_13337:11320670-11320869 + dan-mir-263b Known_mirbase TAAGCGATCTCAGGTG---ATTTCT-GC---GATCT-ATAAATGATTTTTG-------TGATTTTT-G------------------------------AATCAAATA-TTCTG--------------GACTCTCTGCTGTCTTTGAATCTTGGCACTGGGAGAATTCACAGTTGATTTTAT-----TATTCTGTGGTTCTGCGGGTGCC-AAAATTGAAATAATGGCCTAAAACCT--CAA-----AAA-AGGATATT-TA-T-TATAAAATA------------AT-TTA
droBip1 scf7180000396569:85662-85816 - TGA------------------------------------------TTTGTG-------TGATTTTC-A------------------------------AAACGAATA-TTTTG--------------GACTTGCTGCTGTCTTTGAATCTTGGCACTGGGAGAATTCACAGTTGATTTTTT-----TATTCTGTGGTTCTGCGGGTGCC-AAAATTTAAATAATAGCCTAAAACCT--C------AAAA-AAT-----------T---AAATA------------TTTTAT
droKik1 scf7180000302697:259335-259513 - TAAGCGATCATTCATG---ATCTGT-TC---TGGG---------ATTTGGG-------AATCTCT-GA------------------------------A-----------------------TCTTTGAATCTTTGCCTTCTTTGAGCCTTGGCACTGGGAGAATTCACAGTTGATTTTC----AATATTCTGTGGTTCTGCGGGTGCC-AAAACTTAAGCAAAGGCCATAGACAT--CATCTTAAA-GAAATGTTGTA---T-C-----------------------CAA
droFic1 scf7180000454065:1467810-1467924 + TGTGC--------------------------TTAG---------AT-TTTG-------AGTTTTTG-G------------------------------TACCCAAGA-TCAAG--------------GAC---TGGCTGGCTGTGAATCTTGGCACTGGGAGAATTCACAGTTGATTTCAC-----TATTCTGTGGTTCTGCGGGTGCC-AAA------------------------------------------------------------------------------
droEle1 scf7180000491000:1283034-1283220 - TAAGCGATCCCAGGTG---ATCTTGTGC---CTGG---------ATTTTTG-------TGTTTTCTGA------------------------------A-----AGA-TCATG--------------GCC---ATGCTGACTTTGAATCTTGGCACTGGGAGAATTCACAGTTGATTTCAT-----TATTCTGTGGTTCTGCGGGTGCC-AAAATTTAATCGACGGCTTTAAACAA--CATTT-CTAAA-AGCAAATTATA-T-T----AATA------------AT-TAG
droRho1 scf7180000777749:22984-23167 + TAAGCGATCTCAGGAG---ATCATCTCC---CTAG---------ATTTTTG-------TGTTTCT-GG------------------------------AACCCAAGA-TCA----------------AGC---TAGCTGCCTTTGAATCTTGGCACTGGGAGAATTCACAGTTGATTTTAT-----TATTCTGTGGTTCTGCGGGTGCC-AAAATTTAACCGACAGCTTTAAACAA--CAATTTTAAAA-AGCAAAATA---T-A---TAA------------------TA
droBia1 scf7180000302334:535672-535812 + TAAGCGATCTACGATG---ATCTTC-CC---TCAG---------AC-TGTG-------TGCCCGT-GG------------------------------AACGCTAG---------------ATCTTCATT---CAGCCGGCTTTGAGTCTTGGCACTGGGAGAATTCACAGTTGACTTCAA-----AACTCTGTGGTTCTGCGGGTGCC-AAAATTTAAT-----------------------------------------------------------------------
droTak1 scf7180000415815:87986-88142 - AGT--------------------------------------------CTTG-------TGTTTCT-GT------------------------------AATCCTTG---------------ATCATGATA---TAGCCGGCTTTGAGTCTTGGCACTGGGAGAATTCACAGTTGATTTCAT-----TATTCTGTGGTTCTGCGGGTGCC-AAAATTTAATCCACGGCTCTAACCAA--CGACCTAAAAA-TAAAAAATA---T-T---AAA------------------AA
droEug1 scf7180000408844:587115-587273 - TAAGCGATCTCAGCTG---ATCTTG-GC---TAAG---------AATTTTG-------TGTTTTTAGG------------------------------AACCAGAG---------------------AGC---ATGCTGACTTTGAATCTTGGCACTGGGAGAATTCACAGTTGATTTCAT-----TAGTCTGTGGTTCTGCGGGTGCC-AAAATTTAAGCTACAGCTATAAGCAA--C---T--------------------------------------------TTAA
dm3 chr3L:15836516-15836642 - dme-mir-263b Known_mirbase TAAGCGATCTCAGGTG---ATCC-------------------------------------------------------------------------------AGCG-ATCCAGAGCTGTAGCTCTTCAAT---TTGCTGACTTTGAGTCTTGGCACTGGGAGAATTCACAGTTGACTTTAT-----TATTCTGTGGTTCTGCGGGTGCC-AAAACTTAA------------------------------------------------------------------------
droSim2 3l:15464254-15464393 - dsi-mir-263b Known_mirbase TAAGCGATCCTAGGTG---ATCTTC-GC---TTTTAA-------A--CT-----------------------------------------------------GGCG-ATCCAGAGCTCTAGCTCTTCAAT---TTGCTGACTTTGAGTCTTGGCACTGGGAGAATTCACAGTTGACTTGAT-----TATTCTGTGGTTCTGCGGGTGCC-AAAACTTAA------------------------------------------------------------------------
droSec2 scaffold_0:7944360-7944550 - dse-mir-263b Known_mirbase TAAGCGATCCTAGGTG---ATCTTC-GC---TTTTAA-------A--CT-----------------------------------------------------GGCG-ATCCAGAGCGCTAGCTCTTCAAT---TTGCTGACTTTGAGTCTTGGCACTGGGAGAATTCACAGTTGACTTGAT-----TATTCTGTGGTTCTGCGGGTGCC-AAAACTTAAAAACCGGCTTTATACAA--CGATTTCTAAA-CAATTAC---AATTT---AAACA------------ATATAA
droYak3 v2_chr3L_random_102:4437-4626 - dya-mir-263b-2 Known_mirbase TAAGCGATCTCAGGTG---ATCTCC-GC---TTAG---------AAACTGG-------CG-----------------------------------------------ATCCAGAACGATAGCTCTTCAAT---CTGCTGACTTTGAGTCTTGGCACTGGGAGAATTCACAGTTGACTTTAT-----TATTCTGTGGTTCTGCGGGTGCC-AAAATTTAATCAACGGCTCTATACAA--CGATTTCTAAG-AACTA-A---AATTT---AAGCA------------ACATAA
droEre2 scaffold_4784:18090174-18090287 - der-mir-263b Known_mirbase TGA-----------------TCTCC-GC---TTAGCC-------A--CT-----------------------------------------------------GGCG-ATTCAAAC-------------CA---TAGCTGACTTTGAGTCTTGGCACTGGGAGAATTCACAGTTGATTTTAT-----TATTCTGTGGTTCTGCGGGTGCC-AAAATTTAAT-----------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droGri2
TAAGTC--TAGAAATG---ATCAAC-TCACTGAAA---------AATATTG-------T-----------------------------------------------------G------------GAAAG---CTACTGCCATTACATCTTGGCACTGGGAGAATTCACAGTTGGTTATAT---AATATTCTGTGGTTCTGCGGGTGCC-AAACTGTAATGTGTGGACATAGAAACAAC--CTGAAA-AACGCAACATA---T-C---AAATA------------ATTTAASizeHit CountTotal NormTotalM041

Female-body		V109

Male-body
....................................................................................................................................................CTTGGCACTGGGAGAATTCACA.........................................................................................................................2211443.001443431400
....................................................................................................................................................CTTGGCACTGGGAGAATTCA...........................................................................................................................201834.0083438796
....................................................................................................................................................CTTGGCACTGGGAGAATTCACAG........................................................................................................................231393.0039344349
....................................................................................................................................................CTTGGCACTGGGAGAATTCAC..........................................................................................................................211239.0023936203
....................................................................................................................................................CTTGGCACTGGGAGAATTC............................................................................................................................19158.0058157
.....................................................................................................................................................TTGGCACTGGGAGAATTCA...........................................................................................................................19113.001358
.....................................................................................................................................................TTGGCACTGGGAGAATTCACA.........................................................................................................................21112.001257
.....................................................................................................................................................TTGGCACTGGGAGAATTCACAG........................................................................................................................2218.00871
................................................................................................................................................................................................GTGGTTCTGCGGGTGCC-AAACT............................................................................2217.00770
....................................................................................................................................................CTTGGCACTGGGAGAATTCACAGT.......................................................................................................................2417.00716
....................................................................................................................................................CTTGGCACTGGGAGAATTCACT.........................................................................................................................2215.00514
.....................................................................................................................................................TTGGCACTGGGAGAATTCAC..........................................................................................................................2014.00431
....................................................................................................................................................CTTGGCACTGGGAGAATTCACAT........................................................................................................................2314.00404
....................................................................................................................................................CTTGGCACTGGGAGAATTCACG.........................................................................................................................2214.00404
....................................................................................................................................................CTTGGCACTGGGAGAATTT............................................................................................................................1913.00312
....................................................................................................................................................CTTGGCACTGGGAGAATTCACAA........................................................................................................................2313.00303
....................................................................................................................................................CTTGGCACTGGGAGAATTCACC.........................................................................................................................2212.00202
....................................................................................................................................................CTTGGCACTGGGAGAATTCACAC........................................................................................................................2312.00202
....................................................................................................................................................CTTGGCACTGGGAGAATTCAA..........................................................................................................................2112.00211
......................................................................................................................................................TGGCACTGGGAGAATTCACAG........................................................................................................................2112.00220
....................................................................................................................................................CTTGGCACTGGGAGAATTCACAGA.......................................................................................................................2412.00202
................................................................................................................................................................................................GTGGTTCTGCGGGTGCC-AAAC.............................................................................2111.00110
....................................................................................................................................................CTTGGCACTGGGAGAATTCACAAA.......................................................................................................................2411.00101
................................................................................................................................................................................................GTGGTTCTGCGGGTGCC-AAACTT...........................................................................2311.00110
.....................................................................................................................................................TTGGCACTGGGAGAATTC............................................................................................................................1811.00110
....................................................................................................................................................CTTGGCACTGGGAGAATTCC...........................................................................................................................2011.00101
.....................................................................................................................................................TTGGCACTGGGAGAATTCACAGT.......................................................................................................................2311.00110
.................................................................................................................................................................................................TGGTTCTGCGGGTGCC-AAACT............................................................................2111.00110
......................................................................................................................................................TGGCACTGGGAGAATTCACA.........................................................................................................................2011.00110
...............................................................................................................................................................................................TGTGGTTCTGCGGGTGCC-AAACT............................................................................2311.00110
...................................................................................................................................................TCTTGGCACTGGGAGAATTCACAG........................................................................................................................2411.00110
.......................................................................................................................................................GGCACTGGGAGAATTCAC..........................................................................................................................1811.00110
......................................................................................................................................................TGGCACTGGGAGAATTCA...........................................................................................................................1811.00101
droVir3
TAAGTCTACTC--TTGATCAACTCG-CC---AGAG---------AATATTG-------TGTTCTT---------------------------------CTACGGAAA-GCA----------------GAG---CTACTGCCATTTCATCTTGGCACTGGGAGAATTCACAGTCGATTACAT---AATATTCTGTGGTTCTGCGGGTGCC-AAAATGTAATGTGTGGACCAAGACAG--C--CTGAAA--------------------------------------------SizeHit CountTotal NormTotalM027

Male-body		M028

Head		M047

Female-body		M061

Embryo		SRR060654

Ovary		SRR060655

Testis		SRR060656

Ovary		SRR060657

Testis		SRR060658

Ovary		SRR060659

Testis		SRR060660

Ovary		SRR060661

Embryo		SRR060662

Embryo		SRR060663

Embryo		SRR060664

Male-body		SRR060665

Female-body		SRR060666

Male-body		SRR060667

Female-body		SRR060668

Male-body		SRR060669

Female-body		SRR060670

Testis		SRR060671

Male-body		SRR060672

Female-body		SRR060673

Ovary		SRR060674

Ovary		SRR060675

Ovary		SRR060676

Ovary		SRR060677

Ovary		SRR060678

Testis		SRR060679

Testis		SRR060680

Testis		SRR060681

Testis		SRR060682

Embryo		SRR060683

Testis		SRR060684

Embryo		SRR060685

Embryo		SRR060686

Embryo		SRR060687

Embryo		SRR060688

Ovary		SRR060689

Testis		SRR1106712

embryo_0-2h		SRR1106713

embryo_0-2h		SRR1106714

embryo_2-4h		SRR1106715

embryo_4-6h		SRR1106716

embryo_4-6h		SRR1106717

embryo_6-8h		SRR1106718

embryo_6-8h		SRR1106719

embryo_8-10h		SRR1106720

embryo_8-10h		SRR1106721

embryo_10-12h		SRR1106722

embryo_10-12h		SRR1106723

embryo_12-14h		SRR1106724

embryo_12-14h		SRR1106725

embryo_14-16h		SRR1106726

embryo_14-16h		SRR1106727

larvae		SRR1106728

larvae		SRR1106729

mixed whole adult body		SRR1106730

embryo_16-30h		V047

Embryo		V053

Head		V116

Male-body		GSM1528803

follicle cells		SRR2096013

Ovary_Strain_9_oxidized		SRR2096014

Ovary_Strain_160_oxidized		SRR2096026

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096038

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096050

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096055

Ovary_Min_43		SRR2096056

Ovary_Min_46		SRR2096057

Ovary_Min_50		SRR2096058

Ovary_Min_98		SRR2096059

Ovary_Min_164		SRR2096060

Ovary_Min_193		SRR2096061

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096072

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096079

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096080

embryo_0-2h from 15to16 day old nondysgenic mothers		SRR2096081

embryo_0-2h from 15to16 day old nondysgenic mothers
....................................................................................................................................................CTTGGCACTGGGAGAATTCA...........................................................................................................................20120306.002030666107001220300001134780445103316397651015631273010011684201150000110000000000000000000132544890801001000000001100
....................................................................................................................................................CTTGGCACTGGGAGAATTCACA.........................................................................................................................22117768.0017768133142150401011001190388771716001415756713981469000011818620090004020000000012340320021161881432568502200300000022217915
....................................................................................................................................................CTTGGCACTGGGAGAATTCACAG........................................................................................................................23116599.00165993043291060500080000223998764817841123967131760213311020252014352710791411000011122261613170015856191095145004336120200208490385139196
....................................................................................................................................................CTTGGCACTGGGAGAATTCAC..........................................................................................................................21113385.0013385192658301011600001602866572145918377197174214791210212168350801121300000000000100000464412171578008102000000037716
....................................................................................................................................................CTTGGCACTGGGAGAATTC............................................................................................................................1914610.00461038641700130002000191132105210308176031428700020262306002011000000000000000000011136159900000000000000001
....................................................................................................................................................CTTGGCACTGGGAGAATT.............................................................................................................................181289.002891160000000000011156122412026201000001000000000000000000000000000400736900000000000003211
.....................................................................................................................................................TTGGCACTGGGAGAATTCACAG........................................................................................................................221142.001420144000000000014651692071600000000100000000000000000101100001110131500000000000001841
.....................................................................................................................................................TTGGCACTGGGAGAATTCA...........................................................................................................................191133.00133001200000000000104136301080000000000000000000000000000000000000205600000000000000000
....................................................................................................................................................CTTGGCACTGGGAGAATTCACAGT.......................................................................................................................241132.001320000000000000026759940620000000000000010000000000000001000001181900001000000006503
.....................................................................................................................................................TTGGCACTGGGAGAATTCACA.........................................................................................................................211131.00131006000000000001646156605110000010000000000000000000000000000010114100000000000001010
....................................................................................................................................................CTTGGCACTGGGAGAATTT............................................................................................................................191104.00104004000000000001444410770000000000000000000000000000000000000254300000000000000000
....................................................................................................................................................CTTGGCACTGGGAGAATTCAA..........................................................................................................................21199.0099110000000000009115710708120000010100000100000000000000000000000101500000000000000000
....................................................................................................................................................CTTGGCACTGGGAGAATTCACAA........................................................................................................................23199.0099000000000000101692126110111600000000002001000000000000000000000011700000000000002010
.....................................................................................................................................................TTGGCACTGGGAGAATTCAC..........................................................................................................................20187.008700410000000000108271050177000000000000000000000000000000000000061000000000000000000
....................................................................................................................................................CTTGGCACTGGGAGAATTCACAGA.......................................................................................................................24182.008200100000000000888653146000001000000000000000000000000000011161000000000000004521
....................................................................................................................................................CTTGGCACTGGGAGAATTCT...........................................................................................................................20181.0081002000000000002312210260000000000000000000000000000000000000223800000000000000000
....................................................................................................................................................CTTGGCACTGGGAGAATTCACC.........................................................................................................................22155.005500000000000000631118205300000101000000000000000000000000000064400000000000000000
.........................................................................................................................................................CACTGGGAGAATTCACAG........................................................................................................................18153.005302010000000000000100000000000000000000000000000001435910012200000001000000001100
....................................................................................................................................................CTTGGCACTGGGAGAATTCACAT........................................................................................................................23149.004900000000000000230730076000000000000000000000000000000000000107400000000000000000
.....................................................................................................................................................TTGGCACTGGGAGAATTCACAGT.......................................................................................................................23133.00330003000000000032001002300000000000000000000000000011021000211200000000000004310
....................................................................................................................................................CTTGGCACTGGGAGAATTCACG.........................................................................................................................22132.003214000000000000211201000000000000000000000000000000000000000161300000000000000000
....................................................................................................................................................CTTGGCACTGGGAGAATTCG...........................................................................................................................20131.0031000000000000003100100310000000000000000000000000000000000000121000000000000000000
.....................................................................................................................................................TTGGCACTGGGAGAATTC............................................................................................................................18130.003011400001000000021001020000000000000000000000000000000000000071000000000000000000
................................................................................................................................................................................................GTGGTTCTGCGGGTGCC-AAAAT............................................................................22128.00280035000000000021042000200000000000000000000000000110200000041000000000000000000
....................................................................................................................................................CTTGGCACTGGGAGAATTCACT.........................................................................................................................22128.00280000000000000022121003000000000000000000000000000000000000009800000000000000000
....................................................................................................................................................CTTGGCACTGGGAGAATTCC...........................................................................................................................20128.00280000000000000011024207200000000000000000000000000000000000006300000000000000000
....................................................................................................................................................CTTGGCACTGGGAGAATTCAT..........................................................................................................................21127.00270000000000000022111414100000000000000000000000000000000000007300000000000000000
....................................................................................................................................................CTTGGCACTGGGAGAATTCACAC........................................................................................................................23125.00250212000000000030012100300000000000000000000000000000000000035200000000000000000
...................................................................................................................................................TCTTGGCACTGGGAGAATTCA...........................................................................................................................21124.002400000000000000013120022000000000000000000000000000000000000031000000000000000000
...................................................................................................................................................TCTTGGCACTGGGAGAATTCACA.........................................................................................................................23116.00160000000000000010300102000000100000000000000000000000000000000800000000000000000
....................................................................................................................................................CTTGGCACTGGGAGAATTCACAGTT......................................................................................................................25115.00150010000000000010210102100000001000000000000000000010000000001300000000000000000
...................................................................................................................................................TCTTGGCACTGGGAGAATTCAC..........................................................................................................................22113.00130000000000000010120002500000000000000000000000000000000000001100000000000000000
....................................................................................................................................................CTTGGCACTGGGAGAATTA............................................................................................................................19212.002400000000000000011020020000000100000000000000000000000000000012500000000000000000
.........................................................................................................................................................CACTGGGAGAATTCACA.........................................................................................................................17111.00110000000000000000000000000000000000000000000000000000000005600000000000000000000
......................................................................................................................................................TGGCACTGGGAGAATTCACAG........................................................................................................................2117.0070000000000000010101002100000000000000000000000000000000000010000000000000000000
......................................................................................................................................................TGGCACTGGGAGAATTCA...........................................................................................................................1817.0070010000000000001111000000000000000000000000000000000000000000200000000000000000
.......................................................................................................................................................GGCACTGGGAGAATTCACA.........................................................................................................................1916.0060000000000000011012000100000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................CTGGGAGAATTCACAG........................................................................................................................1616.0060000000000000000000000000000000000000000110000000000011000200000000000000000000
...................................................................................................................................................TCTTGGCACTGGGAGAATTC............................................................................................................................2016.0060000000000000010000000100000000000000000000000000000000000002200000000000000000
.......................................................................................................................................................GGCACTGGGAGAATTCACAG........................................................................................................................2015.0050000000000000000112000100000000000000000000000000000000000000000000000000000000
....................................................................................................................................................CTTGGCACTGGGAGAATTTT...........................................................................................................................2015.0050000000000000000000001000000000000000000000000000000000000003100000000000000000
......................................................................................................................................................TGGCACTGGGAGAATTCACA.........................................................................................................................2015.0050010000000000000100001100000000000000000000000000000000000001000000000000000000
droWil2
CTTAAATTCTAAGAA------------------AG---------ATTT-TC-----TGTGTGTGT-TT------------------------------GAACGAAAA-TAA----------------AGT---CTGCTCACAATGCATCTTGGCACTGGGAGAATTCACAGTTGATTCTTATTCGATATTCTGTGGTTCTGCGGGTGCC-AAAATCTAATGTTTGAGC---------------------------------------------------------------SizeHit CountTotal NormTotalM020

Head		M045

Female-body		V117

Male-body		V118

Embryo		V119

Head
....................................................................................................................................................CTTGGCACTGGGAGAATTCACAG........................................................................................................................23168864.006886485888004209525796
....................................................................................................................................................CTTGGCACTGGGAGAATTCACA.........................................................................................................................22125596.00255965653911834516231
....................................................................................................................................................CTTGGCACTGGGAGAATTCAC..........................................................................................................................21123686.00236864525650149121475
....................................................................................................................................................CTTGGCACTGGGAGAATTCA...........................................................................................................................2019011.00901171417813066903
....................................................................................................................................................CTTGGCACTGGGAGAATTC............................................................................................................................1917679.007679342444447155
.....................................................................................................................................................TTGGCACTGGGAGAATTCACAG........................................................................................................................221313.00313089175121
....................................................................................................................................................CTTGGCACTGGGAGAATTCACAGT.......................................................................................................................241309.00309014172132
....................................................................................................................................................CTTGGCACTGGGAGAATTCACAT........................................................................................................................231144.001440029646
.....................................................................................................................................................TTGGCACTGGGAGAATTCACA.........................................................................................................................211125.001250064673
.....................................................................................................................................................TTGGCACTGGGAGAATTCAC..........................................................................................................................201118.001180155107
....................................................................................................................................................CTTGGCACTGGGAGAATTCAA..........................................................................................................................211105.001050032100
....................................................................................................................................................CTTGGCACTGGGAGAATTCT...........................................................................................................................20194.00940012082
....................................................................................................................................................CTTGGCACTGGGAGAATTCACAGA.......................................................................................................................24193.00930015042
................................................................................................................................................................................................GTGGTTCTGCGGGTGCC-AAAAT............................................................................22190.00900107613
....................................................................................................................................................CTTGGCACTGGGAGAATT.............................................................................................................................18187.00871222260
....................................................................................................................................................CTTGGCACTGGGAGAATTCACAA........................................................................................................................23177.00771111856
....................................................................................................................................................CTTGGCACTGGGAGAATTCACAC........................................................................................................................23164.00644022731
....................................................................................................................................................CTTGGCACTGGGAGAATTCACT.........................................................................................................................22150.0050023045
....................................................................................................................................................CTTGGCACTGGGAGAATTT............................................................................................................................19141.0041013136
....................................................................................................................................................CTTGGCACTGGGAGAATTCACC.........................................................................................................................22137.0037002629
.....................................................................................................................................................TTGGCACTGGGAGAATTCA...........................................................................................................................19137.00370210223
.....................................................................................................................................................TTGGCACTGGGAGAATTC............................................................................................................................18133.0033002031
....................................................................................................................................................CTTGGCACTGGGAGAATTCACG.........................................................................................................................22127.00271001115
....................................................................................................................................................CTTGGCACTGGGAGAATTCACAGTT......................................................................................................................25122.0022000139
....................................................................................................................................................CTTGGCACTGGGAGAATTCAT..........................................................................................................................21120.0020000020
....................................................................................................................................................CTTGGCACTGGGAGAATTCC...........................................................................................................................20117.0017001115
................................................................................................................................................................................................GTGGTTCTGCGGGTGCC-AAAA.............................................................................21117.0017000161
....................................................................................................................................................CTTGGCACTGGGAGAATTA............................................................................................................................19215.5031002029
....................................................................................................................................................CTTGGCACTGGGAGAATTCG...........................................................................................................................20115.0015003012
....................................................................................................................................................CTTGGCACTGGGAGAATTCAG..........................................................................................................................21115.001500267
...............................................................................................................................................................................................TGTGGTTCTGCGGGTGCC-AAAA.............................................................................22112.0012000120
......................................................................................................................................................TGGCACTGGGAGAATTCAC..........................................................................................................................19110.0010000010
...............................................................................................................................................................................................TGTGGTTCTGCGGGTGCC-A................................................................................1919.00900081
........................................................................................................................................................GCACTGGGAGAATTCACAG........................................................................................................................1919.00900036
.....................................................................................................................................................TTGGCACTGGGAGAATTCACAGT.......................................................................................................................2318.00800044
......................................................................................................................................................TGGCACTGGGAGAATTCACAG........................................................................................................................2117.00701015
.........................................................................................................................................................CACTGGGAGAATTCACAG........................................................................................................................1817.00731030
......................................................................................................................................................TGGCACTGGGAGAATTCACA.........................................................................................................................2017.00701006
.......................................................................................................................................................GGCACTGGGAGAATTCAC..........................................................................................................................1816.00600006
....................................................................................................................................................CTTGGCACTGGGAGAATTCACAGC.......................................................................................................................2415.00500050
....................................................................................................................................................CTTGGCACTGGGAGAATTCCAG.........................................................................................................................2215.00500023
...............................................................................................................................................................................................TGTGGTTCTGCGGGTGCC-AAA..............................................................................2114.00400031
.......................................................................................................................................................GGCACTGGGAGAATTCACAG........................................................................................................................2014.00400013
........................................................................................................................................................GCACTGGGAGAATTCACA.........................................................................................................................1814.00400031
................................................................................................................................................................................................GTGGTTCTGCGGGTGCC-AAA..............................................................................2014.00400031
dp5
TAAGCC--CATAGATGATGGTCTTC-GC---TTAG---------GCTTAGGAAAAG--TG----T-TTAGCTTAGTTTAGCTTAGTTTGAGACAACGACTACGGCG-ATCG----------------TTA---TTGCTGGCATTGGCTCTTGGCACTGGGAGAATTCACAGTTGGTTTCCA---TATATTCTGTGGTTCTGCGGGTGCC-AAAATCGAATGTTCGGCTCGAAACAG--CAGCTGAAA-A---GTTTC---AGCCT--TAACAAATATATATGTTCATATATSizeHit CountTotal NormTotalM022

Male-body		M040

Female-body		M059

Embryo		M062

Head		V043

Embryo		V051

Head		V112

Male-body		SRR902010

Ovary		SRR902011

Testis		SRR902012

CNS imaginal disc
....................................................................................................................................................CTTGGCACTGGGAGAATTCAC..........................................................................................................................2115907.005907013621644115825996171929
....................................................................................................................................................CTTGGCACTGGGAGAATTCACA.........................................................................................................................2214625.004625074161016311041883941362
....................................................................................................................................................CTTGGCACTGGGAGAATTCA...........................................................................................................................2014381.004381020911201169277105205
....................................................................................................................................................CTTGGCACTGGGAGAATTCACAG........................................................................................................................2313007.00300706015417421848105112453
....................................................................................................................................................CTTGGCACTGGGAGAATTC............................................................................................................................1911163.0011632711873297140031
....................................................................................................................................................CTTGGCACTGGGAGAATT.............................................................................................................................18153.0053090003011003
.....................................................................................................................................................TTGGCACTGGGAGAATTCAC..........................................................................................................................20149.0049011001919018
....................................................................................................................................................CTTGGCACTGGGAGAATTCACAGT.......................................................................................................................24142.0042004111460115
....................................................................................................................................................CTTGGCACTGGGAGAATTT............................................................................................................................19141.004104000829000
.....................................................................................................................................................TTGGCACTGGGAGAATTCA...........................................................................................................................19140.0040018000517000
.....................................................................................................................................................TTGGCACTGGGAGAATTCACA.........................................................................................................................21137.0037011002713004
.....................................................................................................................................................TTGGCACTGGGAGAATTCACAG........................................................................................................................22133.00330610776006
....................................................................................................................................................CTTGGCACTGGGAGAATTCT...........................................................................................................................20132.003204000226000
....................................................................................................................................................CTTGGCACTGGGAGAATTCACAA........................................................................................................................23130.003000210770013
....................................................................................................................................................CTTGGCACTGGGAGAATTCAA..........................................................................................................................21126.002602000137004
....................................................................................................................................................CTTGGCACTGGGAGAATTCACT.........................................................................................................................22115.00150000087000
................................................................................................................................................................................................GTGGTTCTGCGGGTGCC-AAAAT............................................................................22112.00120280001001
....................................................................................................................................................CTTGGCACTGGGAGAATTCACC.........................................................................................................................22110.00100000046000
....................................................................................................................................................CTTGGCACTGGGAGAATTCACAC........................................................................................................................23110.00100030141010
.....................................................................................................................................................TTGGCACTGGGAGAATTC............................................................................................................................1819.0090200025000
....................................................................................................................................................CTTGGCACTGGGAGAATTCACAT........................................................................................................................2317.0070000051001
....................................................................................................................................................CTTGGCACTGGGAGAATTCACAGA.......................................................................................................................2416.0060101011002
....................................................................................................................................................CTTGGCACTGGGAGAATTCC...........................................................................................................................2016.0060000024000
....................................................................................................................................................CTTGGCACTGGGAGAATTCG...........................................................................................................................2015.0050000014000
....................................................................................................................................................CTTGGCACTGGGAGAATTCAT..........................................................................................................................2114.0040000121000
....................................................................................................................................................CTTGGCACTGGGAGAATTCACAAA.......................................................................................................................2413.0030000010002
....................................................................................................................................................CTTGGCACTGGGAGAATTCACAGTT......................................................................................................................2513.0030100011000
......................................................................................................................................................TGGCACTGGGAGAATTCAC..........................................................................................................................1912.0020200000000
................................................................................................................................................................................................GTGGTTCTGCGGGTGCC-AAAA.............................................................................2112.0020000200000
...................................................................................................................................................TCTTGGCACTGGGAGAATTCAC..........................................................................................................................2212.0020200000000
....................................................................................................................................................CTTGGCACTGGGAGAATTCACG.........................................................................................................................2212.0020000020000
...............................................................................................................................................................................................TGTGGTTCTGCGGGTGCC-AAAA.............................................................................2212.0020020000000
................................................................................................................................................................................................GTGGTTCTGCGGGTGCC-AAAAC............................................................................2212.0020020000000
.....................................................................................................................................................TTGGCACTGGGAGAATTT............................................................................................................................1811.0010100000000
......................................................................................................................................................TGGCACTGGGAGAATTCACAG........................................................................................................................2111.0010100000000
...............................................................................................................................TTA---TTGCTGGCATTGGCT...............................................................................................................................................1811.0010000100000
....................................................................................................................................................CTTGGCACTGGGAGAATTCTT..........................................................................................................................2111.0010000001000
.....................................................................................................................................................TTGGCACTGGGAGAATTCACAGT.......................................................................................................................2311.0010000010000
...............................................................................................................................................................................................TGTGGTTCTGCGGGTGCC-.................................................................................1811.0010100000000
.........................................................................................................................................................CACTGGGAGAATTCAC..........................................................................................................................1611.0010000000001
....................................................................................................................................................CTTGGCACTGGGAGAATTA............................................................................................................................1921.0020000020000
................................................................................................................................................................................................GTGGTTCTGCGGGTGCC-A................................................................................1811.0010100000000
droPer2
T--------------------------------------------------------------------------------------------------------------------------------------GCTGGCATTGGCTCTTGGCACTGGGAGAATTCACAGTTGGTTTTCA---TATATTCTGTGGTTCTGCGGGTGCCCAAAATCGAATGTTCGGCTCGAAACAG--CAGCTGAAA-A------------------------------------------SizeHit CountTotal NormTotalM021

Embryo		M042

Female-body		V042

Embryo		V050

Head		V057

Head		V111

Male-body
....................................................................................................................................................CTTGGCACTGGGAGAATTCA...........................................................................................................................2017464.007464041611035642699
....................................................................................................................................................CTTGGCACTGGGAGAATTCAC..........................................................................................................................2115895.0058951113011424076635
....................................................................................................................................................CTTGGCACTGGGAGAATTCACA.........................................................................................................................2212671.002671241089311299327
....................................................................................................................................................CTTGGCACTGGGAGAATTC............................................................................................................................1912426.0024260013131829283
....................................................................................................................................................CTTGGCACTGGGAGAATTCACAG........................................................................................................................2312156.002156242180841802307
....................................................................................................................................................CTTGGCACTGGGAGAATT.............................................................................................................................181165.00165002171397
....................................................................................................................................................CTTGGCACTGGGAGAATTCAA..........................................................................................................................21160.00600009474
....................................................................................................................................................CTTGGCACTGGGAGAATTT............................................................................................................................19147.00470008354
.....................................................................................................................................................TTGGCACTGGGAGAATTCAC..........................................................................................................................20136.003600011223
.....................................................................................................................................................TTGGCACTGGGAGAATTCA...........................................................................................................................19134.00340105262
....................................................................................................................................................CTTGGCACTGGGAGAATTCT...........................................................................................................................20133.00330003273
....................................................................................................................................................CTTGGCACTGGGAGAATTCACAA........................................................................................................................23128.002820110141
....................................................................................................................................................CTTGGCACTGGGAGAATTCACT.........................................................................................................................22123.00230005171
....................................................................................................................................................CTTGGCACTGGGAGAATTCAT..........................................................................................................................21121.00210002190
....................................................................................................................................................CTTGGCACTGGGAGAATTCG...........................................................................................................................20119.00190001180
.....................................................................................................................................................TTGGCACTGGGAGAATTCACA.........................................................................................................................21117.0017000863
.....................................................................................................................................................TTGGCACTGGGAGAATTCACAG........................................................................................................................22116.0016004921
.....................................................................................................................................................TTGGCACTGGGAGAATTC............................................................................................................................18113.00130001120
....................................................................................................................................................CTTGGCACTGGGAGAATTCACC.........................................................................................................................22113.00130002110
....................................................................................................................................................CTTGGCACTGGGAGAATTCC...........................................................................................................................20112.0012000390
....................................................................................................................................................CTTGGCACTGGGAGAATTCACAGT.......................................................................................................................24111.0011001550
....................................................................................................................................................CTTGGCACTGGGAGAATTCACAGA.......................................................................................................................2416.006001230
....................................................................................................................................................CTTGGCACTGGGAGAATTCACG.........................................................................................................................2216.006000051
....................................................................................................................................................CTTGGCACTGGGAGAATTCACAT........................................................................................................................2315.005000221
....................................................................................................................................................CTTGGCACTGGGAGAATTA............................................................................................................................1925.0010000190
....................................................................................................................................................CTTGGCACTGGGAGAATTCACAC........................................................................................................................2314.004000220
....................................................................................................................................................CTTGGCACTGGGAGAATTCTT..........................................................................................................................2113.003000021
....................................................................................................................................................CTTGGCACTGGGAGAATTCAG..........................................................................................................................2113.003010020
.........................................................................................................................................................CACTGGGAGAATTCACAG........................................................................................................................1813.003200100
......................................................................................................................................................TGGCACTGGGAGAATTCA...........................................................................................................................1812.002000200
droAna3
TAAGCGATCTCAGGTG---ATTTCT-GC---GATCT-ATAAATGATTTTTG-------TGATTTTT-G------------------------------AATCAAATA-TTCTG--------------GACTCTCTGCTGTCTTTGAATCTTGGCACTGGGAGAATTCACAGTTGATTTTAT-----TATTCTGTGGTTCTGCGGGTGCC-AAAATTGAAATAATGGCCTAAAACCT--CAA-----AAA-AGGATATT-TA-T-TATAAAATA------------AT-TTASizeHit CountTotal NormTotalM044

Female-body		M058

Embryo		V039

Embryo		V055

Head		V105

Male-body		V106

Head
....................................................................................................................................................CTTGGCACTGGGAGAATTCAC..........................................................................................................................21117321.00173217281888644615891
....................................................................................................................................................CTTGGCACTGGGAGAATTCACAG........................................................................................................................23115088.0015088112999762563513520
....................................................................................................................................................CTTGGCACTGGGAGAATTCA...........................................................................................................................20112018.00120187907125919048769
....................................................................................................................................................CTTGGCACTGGGAGAATTCACA.........................................................................................................................22110883.001088384134383312338677
....................................................................................................................................................CTTGGCACTGGGAGAATTC............................................................................................................................1916895.00689516004574176005
....................................................................................................................................................CTTGGCACTGGGAGAATTCACAT........................................................................................................................231238.0023800313231
....................................................................................................................................................CTTGGCACTGGGAGAATTCT...........................................................................................................................201113.0011310016888
....................................................................................................................................................CTTGGCACTGGGAGAATTCAA..........................................................................................................................211110.001101008794
....................................................................................................................................................CTTGGCACTGGGAGAATTCACAGT.......................................................................................................................241103.001030015493
.....................................................................................................................................................TTGGCACTGGGAGAATTCACAG........................................................................................................................221101.0010111015183
....................................................................................................................................................CTTGGCACTGGGAGAATTT............................................................................................................................19198.0098100171169
.....................................................................................................................................................TTGGCACTGGGAGAATTCAC..........................................................................................................................20191.009110004176
....................................................................................................................................................CTTGGCACTGGGAGAATT.............................................................................................................................18189.008910038347
....................................................................................................................................................CTTGGCACTGGGAGAATTCAT..........................................................................................................................21174.00741001666
.....................................................................................................................................................TTGGCACTGGGAGAATTCA...........................................................................................................................19159.005910009931
.....................................................................................................................................................TTGGCACTGGGAGAATTC............................................................................................................................18157.00571007247
....................................................................................................................................................CTTGGCACTGGGAGAATTCACT.........................................................................................................................22154.005400110340
.....................................................................................................................................................TTGGCACTGGGAGAATTCACA.........................................................................................................................21153.00537001540
....................................................................................................................................................CTTGGCACTGGGAGAATTCAG..........................................................................................................................21152.00520000547
....................................................................................................................................................CTTGGCACTGGGAGAATTCACAGA.......................................................................................................................24144.00441002140
....................................................................................................................................................CTTGGCACTGGGAGAATTA............................................................................................................................19134.00340003427
....................................................................................................................................................CTTGGCACTGGGAGAATTCACAA........................................................................................................................23129.00290000227
................................................................................................................................................................................................GTGGTTCTGCGGGTGCC-AAAAT............................................................................22125.00252430016
....................................................................................................................................................CTTGGCACTGGGAGAATTCACG.........................................................................................................................22125.00250003022
....................................................................................................................................................CTTGGCACTGGGAGAATTCACAC........................................................................................................................23122.00220502114
....................................................................................................................................................CTTGGCACTGGGAGAATTCACAGTT......................................................................................................................25115.00150101211
....................................................................................................................................................CTTGGCACTGGGAGAATTCG...........................................................................................................................20113.00130001012
....................................................................................................................................................CTTGGCACTGGGAGAATTCACC.........................................................................................................................22112.0012000318
....................................................................................................................................................CTTGGCACTGGGAGAATTCC...........................................................................................................................2018.008000215
....................................................................................................................................................CTTGGCACTGGGAGAATTTT...........................................................................................................................2017.007000115
................................................................................................................................................................................................GTGGTTCTGCGGGTGCC-AAAA.............................................................................2116.006110004
....................................................................................................................................................CTTGGCACTGGGAGAATTCACTT........................................................................................................................2315.005000005
................................................................................................................................................................................................GTGGTTCTGCGGGTGCC-A................................................................................1815.005400001
.........................................................................................................................................................CACTGGGAGAATTCACAG........................................................................................................................1814.004200002
......................................................................................................................................................TGGCACTGGGAGAATTCAC..........................................................................................................................1914.004000004
....................................................................................................................................................CTTGGCACTGGGAGAATTG............................................................................................................................1914.004000013
......................................................................................................................................................TGGCACTGGGAGAATTCACA.........................................................................................................................2014.004200011
droBip1
TGA------------------------------------------TTTGTG-------TGATTTTC-A------------------------------AAACGAATA-TTTTG--------------GACTTGCTGCTGTCTTTGAATCTTGGCACTGGGAGAATTCACAGTTGATTTTTT-----TATTCTGTGGTTCTGCGGGTGCC-AAAATTTAAATAATAGCCTAAAACCT--C------AAAA-AAT-----------T---AAATA------------TTTTATSizeHit CountTotal NormTotal
No Reads
droKik1
TAAGCGATCATTCATG---ATCTGT-TC---TGGG---------ATTTGGG-------AATCTCT-GA------------------------------A-----------------------TCTTTGAATCTTTGCCTTCTTTGAGCCTTGGCACTGGGAGAATTCACAGTTGATTTTC----AATATTCTGTGGTTCTGCGGGTGCC-AAAACTTAAGCAAAGGCCATAGACAT--CATCTTAAA-GAAATGTTGTA---T-C-----------------------CAASizeHit CountTotal NormTotal
No Reads
droFic1
TGTGC--------------------------TTAG---------AT-TTTG-------AGTTTTTG-G------------------------------TACCCAAGA-TCAAG--------------GAC---TGGCTGGCTGTGAATCTTGGCACTGGGAGAATTCACAGTTGATTTCAC-----TATTCTGTGGTTCTGCGGGTGCC-AAA------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEle1
TAAGCGATCCCAGGTG---ATCTTGTGC---CTGG---------ATTTTTG-------TGTTTTCTGA------------------------------A-----AGA-TCATG--------------GCC---ATGCTGACTTTGAATCTTGGCACTGGGAGAATTCACAGTTGATTTCAT-----TATTCTGTGGTTCTGCGGGTGCC-AAAATTTAATCGACGGCTTTAAACAA--CATTT-CTAAA-AGCAAATTATA-T-T----AATA------------AT-TAGSizeHit CountTotal NormTotal
No Reads
droRho1
TAAGCGATCTCAGGAG---ATCATCTCC---CTAG---------ATTTTTG-------TGTTTCT-GG------------------------------AACCCAAGA-TCA----------------AGC---TAGCTGCCTTTGAATCTTGGCACTGGGAGAATTCACAGTTGATTTTAT-----TATTCTGTGGTTCTGCGGGTGCC-AAAATTTAACCGACAGCTTTAAACAA--CAATTTTAAAA-AGCAAAATA---T-A---TAA------------------TASizeHit CountTotal NormTotal
No Reads
droBia1
TAAGCGATCTACGATG---ATCTTC-CC---TCAG---------AC-TGTG-------TGCCCGT-GG------------------------------AACGCTAG---------------ATCTTCATT---CAGCCGGCTTTGAGTCTTGGCACTGGGAGAATTCACAGTTGACTTCAA-----AACTCTGTGGTTCTGCGGGTGCC-AAAATTTAAT-----------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
AGT--------------------------------------------CTTG-------TGTTTCT-GT------------------------------AATCCTTG---------------ATCATGATA---TAGCCGGCTTTGAGTCTTGGCACTGGGAGAATTCACAGTTGATTTCAT-----TATTCTGTGGTTCTGCGGGTGCC-AAAATTTAATCCACGGCTCTAACCAA--CGACCTAAAAA-TAAAAAATA---T-T---AAA------------------AASizeHit CountTotal NormTotal
No Reads
droEug1
TAAGCGATCTCAGCTG---ATCTTG-GC---TAAG---------AATTTTG-------TGTTTTTAGG------------------------------AACCAGAG---------------------AGC---ATGCTGACTTTGAATCTTGGCACTGGGAGAATTCACAGTTGATTTCAT-----TAGTCTGTGGTTCTGCGGGTGCC-AAAATTTAAGCTACAGCTATAAGCAA--C---T--------------------------------------------TTAASizeHit CountTotal NormTotal
No Reads
dm3
TAAGCGATCTCAGGTG---ATCC-------------------------------------------------------------------------------AGCG-ATCCAGAGCTGTAGCTCTTCAAT---TTGCTGACTTTGAGTCTTGGCACTGGGAGAATTCACAGTTGACTTTAT-----TATTCTGTGGTTCTGCGGGTGCC-AAAACTTAA------------------------------------------------------------------------SizeHit CountTotal NormTotalGSM154618

Ovary		GSM154620

Ovary		GSM154621

Ovary		GSM154622

Ovary		GSM180328

Head		GSM180329

Mixed-body		GSM180330

Embryo		GSM180331

Embryo		GSM180332

Embryo		GSM180333

Embryo		GSM180334

Larvae		GSM180335

Disc		GSM180336

Pupae		GSM180337

S2		GSM239041

Head		GSM239050

Head		GSM239051

S2		GSM239052

S2		GSM246084

Head		GSM266765

S2		GSM280082

Ovary		GSM280083

Ovary		GSM280084

Ovary		GSM280085

Testis		GSM280086

Ovary		GSM280087

S2-NP		GSM280088

S2-NP		GSM312995

Head		GSM313160

Head		GSM313161

Head		GSM313162

Head		GSM313163

Head		GSM313164

Head		GSM313165

Head		GSM343287

Embryo		GSM379050

Ovary		GSM379051

Ovary		GSM379052

Ovary		GSM379053

Ovary		GSM379054

Ovary		GSM379055

Ovary		GSM379056

Ovary		GSM379057

Ovary		GSM379058

Ovary		GSM379059

Ovary		GSM379060

Ovary		GSM379061

Ovary		GSM379062

Ovary		GSM379063

Ovary		GSM379064

Ovary		GSM379065

Ovary		GSM379066

Ovary		GSM379067

Ovary		GSM424739

S2		GSM424740

S2		GSM424741

S2		GSM467729

Female-body		GSM467730

Female-body		GSM467731

Female-body		M002

CS		M003

Male-body		M004

Male-body		M005

ML-DmD32		M006

ML-DmD32		M029

OSC		M030

OSC		M031

OSC		M032

S2-R+		M033

S2-R+		M034

S2-R+		M035

S2-R+		M036

S2-R+		M037

S2-R+		M038

S2-R+		M039

S2-R+		M048

S2-R+		OSS2

OSS		OSS6

OSS		OSS7

OSS		OSS8

OSS		S1

Head		S10

Embryo		S11

Embryo		S12

Embryo		S13

Embryo		S14

Embryo		S15

S2-GMR		S16

Kc		S17

Larvae		S18

Larvae		S19

Pupae		S2

Head		S20

Pupae		S21

Disc		S22

Head		S23

Female-body		S24

Male-body		S25

Larvae		S26

Larvae		S27

Pupae		S28

Pupae		S29

Head		S3

Male-body		S30

S2-GMR		S31

S2		S32

S2		S33

Kc		S34

Kc		S35

Kc		S4

Female-body		S5

Disc		S6

Embryo		S7

Embryo		S8

S2		S9

Embryo		SRR001337

Head		SRR001338

Head		SRR001339

Head		SRR001340

Head		SRR001341

Head		SRR001342

Head		SRR001343

Head		SRR001344

Head		SRR001345

Head		SRR001346

Head		SRR001347

Head		SRR001348

Head		SRR001349

Head		SRR001664

Head		SRR010951

Ovary		SRR010952

Ovary		SRR010953

Ovary		SRR010954

Ovary		SRR010955

Ovary		SRR010956

Ovary		SRR010957

Ovary		SRR010958

Ovary		SRR010959

Ovary		SRR010960

Ovary		SRR014268

Embryo		SRR014269

Embryo		SRR014270

Embryo		SRR014271

Embryo		SRR014272

Embryo		SRR014273

Ovary		SRR014274

Ovary		SRR014275

Ovary		SRR014276

Ovary		SRR014277

Ovary		SRR014278

Ovary		SRR014279

Ovary		SRR014280

Ovary		SRR014281

Ovary		SRR014282

Ovary		SRR023197

S2		SRR023399

S2		SRR023400

S2		SRR023402

S2		SRR023407

S2		SRR029028

S2		SRR029029

S2		SRR029030

S2		SRR029031

S2		SRR029032

S2		SRR029033

S2		SRR029608

Head		SRR029633

Head		SRR030145

gb3		SRR031692

Head		SRR031693

Head		SRR031694

Head		SRR031696

Head		SRR031697

Head		SRR031698

Head		SRR031699

Head		SRR031700

Head		SRR031701

Head		SRR031702

Head		SRR031703

Head		SRR031704

Head		SRR032092

S2		SRR032093

S2		SRR032094

S2		SRR032095

S2-NP		SRR032096

S2-NP		SRR032152

Head		SRR060643

Testis		SRR060644

Ovary		SRR060645

Testis		SRR060646

Ovary		SRR060647

Ovary		SRR060648

Ovary		SRR060649

Ovary		SRR060650

Testis		SRR060651

Ovary		SRR060652

Testis		SRR060653

Ovary		SRR065151

Ovary		SRR065152

Ovary		SRR065153

Ovary		SRR065154

Ovary		SRR065155

Ovary		SRR065800

Ovary		SRR065801

Ovary		SRR065802

Ovary		SRR065803

Ovary		SRR065804

Ovary		SRR065805

Ovary		SRR065806

Ovary		SRR065807

Ovary		SRR097865

S2-NP		SRR097866

S2-NP		SRR097867

S2-NP		SRR298536

Ovary		SRR298537

Ovary		SRR298711

Ovary		SRR298712

Ovary		SRR317110

Ovary		SRR317111

Ovary		SRR317112

Ovary		SRR317113

Ovary		SRR317114

Ovary		SRR317115

Ovary		SRR317116

Ovary		SRR317117

Ovary		SRR341115

S2		SRR341116

S2		SRR341117

S2		SRR341118

S2		SRR351332

Mixed-body		SRR351333

Mixed-body		T004

OSC		T005

CME-L1		V001

Embryo		V002

Embryo		V003

S2		V006

Female-body		V007

Head		V008

S2		V009

CME-L1		V010

ML-DmD20-C5		V011

Sg4		V012

Male-body		V013

Head		V014

DTT		V015

DreRFHV		V018

Kc167		V019

GM2		V020

S2-R+		V021

ML-DmD21		V022

ML-DmD32		V023

Head		V024

Kc167		V025

S2-R+		V026

1182-2H		V027

ML-DmD21		V028

CME-W1-Cl.8+		V029

ML-DmD9		V030

ML-DmD8		V031

GM2		V032

S1		V033

CME-W1-Cl.8+		V034

ML-DmD16-C3		V035

ML-DmD32		V036

ML-DmD20-C5		V037

S2		V038

S2		V063

Ovary		V0632

Ovary		V064

Ovary		V0642

Ovary		V065

Ovary		V0652

Ovary		V066

Ovary		V0662

Ovary		V067

S2-NP		V073

mbn2		V074

S3		V075

ML-DmBG1-C1		V076

ML-DmBG3-C2		V077

Head		V078

Head		V079

Head		V080

Head		V081

Embryo		V082

Embryo		V083

Male-body		V084

Female-body		V085

CME-W2		V086

Female-body		V088

Ovary		V0882

Ovary		V089

Ovary		V0892

Ovary		V090

Male-body		V091

fGS/OSS		V092

Male-body		V093

Male-body		V094

S2-R+		V095

S2-R+		V096

Ovary		V097

Ovary		V098

Ovary		V125

ML-DmD9		V126

CME-L1		V127

G2		V128

S3		V129

ML-DmBG1-C1		V130

ML-DmBG3-C2		V131

ML-DmD16-C3		V132

ML-DmD32		V133

Sg4		V134

ML-DmD8		V135

CME-W2		V136

Male-body		V137

Head		V138

Male-body		V139

Female-body		V140

Female-body		V141

Female-body		V142

Female-body		V144

OSC		V145

S2		V146

S1		V147

1182-2H		V148

mbn2		GSM1528798

follicle cells
....................................................................................................................................................CTTGGCACTGGGAGAATTCA...........................................................................................................................201136070.00136070000045400002100010100001380512112853749144201000102010010100000065461800000000000000000000071603400021643131774497199204491018260040110231710467567119586028531651251373162280000000000002000011061000000000000050173722240102834287593305851417252031772500000926194271600022019000000000000000002204662111101122400055100263003751214570029178122627001021587100000000000000733335514218011030863171346125961068399938042497132037123452601884540097400270123100043253156567101393204327003207300010
....................................................................................................................................................CTTGGCACTGGGAGAATTCAC..........................................................................................................................211117603.00117603000051700320010300120001210949255969067711600100100101001001020008130110000000000000000000018264564011326431922448181141387456931544292211272229414173112449860125013742146228665415234000000010000390000217110300003000000025092648018372513458789657592918449839965710000012853753916000420210020012280000000081741100141041101514920011910018621302331278390025993632582001022801000000000100000105372853172700101856735659317845962226965232198661224518800361889721017212771190055210218812450351757852497369031502200200
....................................................................................................................................................CTTGGCACTGGGAGAATTCACAG........................................................................................................................23190481.0090481000015001152521400001000004005048511045054966600000100001000000010003210000000000000000000001201357248100023254517412628281551018037450010011116879407333017411053196121634725214400000010004443532100013900000000000003015011281092310454281618124551591458134425445650000076029411500080140000010100000000016182241362112100000000109310821128480170003353622288001001522000000000000000179862121151101104262426271865239917427267103951256901937422503045576812513171120011501001636250532434715195614181888200410
....................................................................................................................................................CTTGGCACTGGGAGAATTC............................................................................................................................19163866.006386600000000000000000100001004006111521012200110000002000000000004310000000000000000000008000000042780049570011164100000110121021553501002515190551788570000000000000000000013000000020000000519975023331661241116395171376312010002116311600050300000000000000000001239011161020000030054011554017000260645123300000729000000000000000112260404010082736150721283598308626114113516249111716265401021403000000040287929827263344654415801549500000
....................................................................................................................................................CTTGGCACTGGGAGAATTCACA.........................................................................................................................22161024.0061024000022100216127000041000040201022564354693400010000100000000000002016900000000000000000000054435463510849299831722943826211913079516001327204225924762128105602393014941602122311700000000000180010100310001000100000111213291205098240122475416247026882118204945800007324203460001802400000000000100000217173324101927136100133110052642901244921500445227302750000010850000110000000001026321317525012072270277514721784143143211966314381410224624121033755032616145108921521169130512467594155611451387501210
....................................................................................................................................................CTTGGCACTGGGAGAATTCACATC.......................................................................................................................24122154.00221540000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000187623392000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................CTTGGCACTGGGAGAATTCAATC........................................................................................................................2316295.00629500000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005482813000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................CTTGGCACTGGGAGAATT.............................................................................................................................1812925.002925000000000000000000000000000140141302000000000000000000000012000000000000000000000010000000000100300000020000000000000701450102002359900000000000000000000000000000000000026122019017130145620767000001840000001010000000000000000000400000000000000000000530200084907000001600000000000000010000000000022131292113942164120000012805399000000000010000043879468131144000000
....................................................................................................................................................CTTGGCACTGGGAGAATTCATC.........................................................................................................................2211225.00122500000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000100000000000000000000000000000000000000010010000000000000000000000000000000000000000000000000000000000001046174000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000
................................................................................................................................................................................................GTGGTTCTGCGGGTGCC-AAAAC............................................................................2211152.0011520000000113900200000000000000010000000000000000000000000000100000000000000000000006111462337201163741171510837344020000102287210100000000000010000000000000000000000000000000000000020010011110000000002000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000100000000000
....................................................................................................................................................CTTGGCACTGGGAGAATTT............................................................................................................................1911006.0010060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100001000000000000000000020000000020100000000000000000000000000000000000001016020034041601000000040000000000000000000000000000000000000000000100000012000012501000002000000000000000000000000000029101236000005000013081100000000000000006270354026000000
....................................................................................................................................................CTTGGCACTGGGAGAATTCAA..........................................................................................................................211992.0099200002000000000000000000100000000000000000000000000000000000000000000000000000000000000000122011201001115000000000000001120301020501820000000000000000000000000000000000002929026001140605228410000011001000000200000000000000000000000010100000091003000101000520600000150000000000000001421000000000596658540130010000670405800001000000000007135107984100000
.....................................................................................................................................................TTGGCACTGGGAGAATTCA...........................................................................................................................191682.0068200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000410103010601400000000000000000000000000000000000051907207505013012000000100000000000000000000000000000000000000000000000000028000021030000070000000000000000000001000000442431410202011200660274900010000000000002914542861315000000
.....................................................................................................................................................TTGGCACTGGGAGAATTCAC..........................................................................................................................201646.00646000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000110031300009100000100000001110001000615300000000000000000000100000000000000020190100051011202033210000014000200000100000000000000000000000001100000000000101600006205000001200000000000000000000000000001937132804310000004803946000000000000000099927313167000000
....................................................................................................................................................CTTGGCACTGGGAGAATTCT...........................................................................................................................201596.00596000000000000000000000000000000000000000000000000000000000000000000000000000000001000000010040001000000000000000000003000000005131000000000000000000000000000000000000182007000000050700000010010000000000000000000000000000000000000000010000032200031301000002000000000000000000000000000016881200020400001307800000000000000003635660356000000
....................................................................................................................................................CTTGGCACTGGGAGAATTCC...........................................................................................................................201542.0054200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001005000000000000000000000232020200013216110000000000000000000000000000000000008901000100020200000000000000000000000000000000000000000000000000100000001800006601000002000000000000000000000000000093527001103000025103548000000000000000001022344000000
.....................................................................................................................................................TTGGCACTGGGAGAATTCACAG........................................................................................................................221523.00523000000000000000000000000000002850100000000000000000000000000000000000000000000000001000000000020000000000000000010004000000101013000000000000004000000000000000000000131709502729012221219000009000000000000000000000000000001100000000000010002500700002001000005000000000000000011000000000014177147346000001021024220000000000000000101051136715000000
....................................................................................................................................................CTTGGCACTGGGAGAATTA............................................................................................................................191470.004700000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000100010110000000000000000000000000000000000007801000411011011000000000100000000000000000000000000000000000000001000000130000040300000200000000000000000000000000004341321600000200101401416000000000000000016187120344000000
....................................................................................................................................................CTTGGCACTGGGAGAATTCACAGT.......................................................................................................................241414.00414000000000000000000000000000000000000000000000000000000001000000000000000000000000001130000001002001020200000001023000520000000002000000000000010000000100000000000000088071003061219200000210000000000000000000000000000000000000000000100201400100001100000006000000000000000001000000000067775498300000080711000000000000000051121111777000000
....................................................................................................................................................CTTGGCACTGGGAGAATTCAT..........................................................................................................................211410.00410000040000000000000000000000000000000000000000000000000000000000000000000000000001000000000060000000111510000000000000600000100409100000000000000000000000000000000000013190160018011090180000006000000000000000000000000000000000000000000041001001200003207000001200000000000000000020000000001513121930320200002003134000000000000000055371040000000
....................................................................................................................................................CTTGGCACTGGGAGAATTCACAT........................................................................................................................231367.00367000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000001000010103412000000000000000000000000000000000000085030002010124000000100000000000000000000000000000000000000000001411900320100000420000000200000000000000001000000000001055436610000003048000000000000000065692626000000
....................................................................................................................................................CTTGGCACTGGGAGAATTCACC.........................................................................................................................221362.00362000000000000000000000000000000000000000000000000100000000000000000000000000000000000100000000010000001000000000000001510010202010013900000000000000000000100000000000000016601000000001000000001001000000000000000000000000000000000000000023100320016100023010000030000000000000000000000000000342704220000001240211700000000000000001930321000000
.....................................................................................................................................................TTGGCACTGGGAGAATTCACA.........................................................................................................................211351.00351000000000000000000000000000000980000000000000000000000000000000000000000000000000000200000100040100000000000000110006200020102100000000000000000000000000000000000000440810380901101240000010100000000000000000000000000000000000000000000001301700000201000001000000000000000000020000000007939152301010230014190000000000000000363164448000000
....................................................................................................................................................CTTGGCACTGGGAGAATTCACAGA.......................................................................................................................241344.00344000000000000000000000000000000000000000000000000000000000000000000000000000000000001100000010000000000000000000100002000000100000000000000000000000000000000000000000480131129010701300000020000000000000000000000000000000000000000000502800420020000320200000400000000000000000000000000009891111062000010130510000000000000000036488542000000
....................................................................................................................................................CTTGGCACTGGGAGAATTCACAA........................................................................................................................231306.0030600002000140000000000000000000000000000000000000000000000000000000000000000000000020150000002006000030300000000000000410000010001300000000000000000000000000000000000081308000702071280000001301000010200000000000000000000000000100000026100004001000020020000020000000000000000000010000000132399141000000011099001100000000000023421222000000
....................................................................................................................................................CTTGGCACTGGGAGAATTCACTC........................................................................................................................231289.00289000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000110000000000000000000000000000000000000000000000000000000000000022462000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
.....................................................................................................................................................TTGGCACTGGGAGAATTC............................................................................................................................181256.002560000000000000000000000000000011300000000000000000000000000000000000000000000000000000000000000000000000000000000000001000020011000000000000000000000000000000000000002502001311040400000020000000001000000000000000000000000000000000000000015000010010000030000000000000000000000000000651119000000000014011600000000000000001197142265000000
....................................................................................................................................................CTTGGCACTGGGAGAATTCG...........................................................................................................................201241.0024100001000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000001200000000000000110000000113100000000000000000000000000000000000071303000003080140000004000000000000000000000000000000000000000000000000003200005100000003000000000000000000000000000016129130011010000170516000000000000000004884344000000
....................................................................................................................................................CTTGGCACTGGGAGAATTCAG..........................................................................................................................211195.001950000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000101000041000000000000000000000000300000000000000000000000000000000000008704000302012135000000100000000000000000000000000000000000000000000000110010000400000000700000000000000000000100000001016930002000000601017000000000000000021741000000000
....................................................................................................................................................CTTGGCACTGGGAGAATTCACAC........................................................................................................................231192.0019200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000100000000101000000000000000000000000000000000000068010002010100000000500000000000000000000000000010000000000000003380021012000022000000010000000000000000000000000000727102293100000013036000000000000000011831311000000
.....................................................................................................................................................TTGGCACTGGGAGAATTCACATC.......................................................................................................................231176.00176000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000014333000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................CTTGGCACTGGGAGAATTCACT.........................................................................................................................221150.0015000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000001000000000500000000000010210000011002000000000000000000000000000000000000057050000010007000000000000000000000000000000000000000000000000006000310220000320200000400000000000000000000000000001254021300000040310000000000000000014231012000000
....................................................................................................................................................CTTGGCACTGGGAGAATTCACG.........................................................................................................................221143.001430000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000020000000000000020000100000300000000000000000000000000000000000005708000201020800000000000000000000000000000000000000000000000000000000002000010000000030000000000000000000000000000931702220000009067000000000000000023243212000000
................................................................................................................................................................................................GTGGTTCTGCGGGTGCC-AAAA.............................................................................211131.0013100000000200000000000000000000000000000000000000000000000100000000000000000000000000433700010111120010317000000000920000000000000030000000000000000000000000000000000000100010000004000000000000000000000000000000000000000000000000000000001100000000000000000000000000000000000000000000000010000000000000000000000000000000420000000000
droSim2
TAAGCGATCCTAGGTG---ATCTTC-GC---TTTTAA-------A--CT-----------------------------------------------------GGCG-ATCCAGAGCTCTAGCTCTTCAAT---TTGCTGACTTTGAGTCTTGGCACTGGGAGAATTCACAGTTGACTTGAT-----TATTCTGTGGTTCTGCGGGTGCC-AAAACTTAA------------------------------------------------------------------------SizeHit CountTotal NormTotalM023

Head		M024

Male-body		M025

Embryo		M053

Female-body		O001

Testis		O002

Head		SRR553485

Ovary		SRR553486

Ovary		SRR553487

Ovary		SRR553488

Ovary		SRR618934

Ovary		V044

Embryo		SRR902008

Ovary		SRR902009

Testis		SRR1275487

Male larvae		SRR1275485

Male prepupae		SRR1275483

Male prepupae
....................................................................................................................................................CTTGGCACTGGGAGAATTCACAG........................................................................................................................2319641.0096416820474384728887299523162350200002
....................................................................................................................................................CTTGGCACTGGGAGAATTCACA.........................................................................................................................2214331.00433129830292159310919851244361003000
....................................................................................................................................................CTTGGCACTGGGAGAATTCAC..........................................................................................................................2112823.0028237014351531088153151592361722402000
....................................................................................................................................................CTTGGCACTGGGAGAATTCA...........................................................................................................................201535.005351670497693891317662413000
....................................................................................................................................................CTTGGCACTGGGAGAATTC............................................................................................................................191405.0040516531011915289911403011
....................................................................................................................................................CTTGGCACTGGGAGAATT.............................................................................................................................181107.001075100138030131000000
....................................................................................................................................................CTTGGCACTGGGAGAATTCACAGA.......................................................................................................................24155.00551000001030170600000
....................................................................................................................................................CTTGGCACTGGGAGAATTCACAGT.......................................................................................................................24143.004300001102161101200000
.....................................................................................................................................................TTGGCACTGGGAGAATTCACAG........................................................................................................................22135.0035010000112402600000
....................................................................................................................................................CTTGGCACTGGGAGAATTCACAA........................................................................................................................23123.0023100000021260200000
................................................................................................................................................................................................GTGGTTCTGCGGGTGCC-AAAAC............................................................................22114.001401021700000300000
....................................................................................................................................................CTTGGCACTGGGAGAATTCACAT........................................................................................................................23113.001300000000540400000
.....................................................................................................................................................TTGGCACTGGGAGAATTCACA.........................................................................................................................21112.001200000100610400000
.....................................................................................................................................................TTGGCACTGGGAGAATTCAC..........................................................................................................................20110.001040000100120200000
.........................................................................................................................................................CACTGGGAGAATTCACAG........................................................................................................................18110.001021500000200000000
....................................................................................................................................................CTTGGCACTGGGAGAATTCACAGC.......................................................................................................................2417.00700000000500200000
....................................................................................................................................................CTTGGCACTGGGAGAATTCACAC........................................................................................................................2316.00610200000100200000
................................................................................................................................................................................................GTGGTTCTGCGGGTGCC-A................................................................................1815.00520000200100000000
................................................................................................................................................................................................GTGGTTCTGCGGGTGCC-AAA..............................................................................2015.00500000300000200000
....................................................................................................................................................CTTGGCACTGGGAGAATTCAA..........................................................................................................................2114.00410000000110100000
....................................................................................................................................................CTTGGCACTGGGAGAATTCACG.........................................................................................................................2214.00411000000010100000
........................................................................................................................................................GCACTGGGAGAATTCACA.........................................................................................................................1813.00300000000210000000
....................................................................................................................................................CTTGGCACTGGGAGAATTA............................................................................................................................1913.00321000000000000000
....................................................................................................................................................CTTGGCACTGGGAGAATTCACT.........................................................................................................................2213.00310000000010100000
......................................................................................................................................................TGGCACTGGGAGAATTCAC..........................................................................................................................1912.00200000200000000000
.......................................................................................................................................................GGCACTGGGAGAATTCACAG........................................................................................................................2012.00200200000000000000
....................................................................................................................................................CTTGGCACTGGGAGAATTCAG..........................................................................................................................2112.00200000000020000000
......................................................................................................................................................TGGCACTGGGAGAATTCACA.........................................................................................................................2012.00200000000110000000
................................................................................................................................................................................................GTGGTTCTGCGGGTGCC-AAAA.............................................................................2112.00200000000000101000
....................................................................................................................................................CTTGGCACTGGGAGAATTCACAGTA......................................................................................................................2512.00200000000000200000
................................................................................................................................................................................................GTGGTTCTGCGGGTGCC-AA...............................................................................1912.00200000200000000000
....................................................................................................................................................CTTGGCACTGGGAGAAT..............................................................................................................................1712.00200000000020000000
.....................................................................................................................................................TTGGCACTGGGAGAATTCA...........................................................................................................................1912.00200000000020000000
....................................................................................................................................................CTTGGCACTGGGAGAATTCACAGAA......................................................................................................................2512.00200000000110000000
......................................................................................................................................................TGGCACTGGGAGAATT.............................................................................................................................1611.00100000000010000000
.........................................................................................................................................................CACTGGGAGAATTCACA.........................................................................................................................1711.00100000001000000000
.......................................................................................................................................................GGCACTGGGAGAATTCAC..........................................................................................................................1811.00100000000001000000
....................................................................................................................................................CTTGGCACTGGGAGAATTCACC.........................................................................................................................2211.00100000000000100000
droSec2
TAAGCGATCCTAGGTG---ATCTTC-GC---TTTTAA-------A--CT-----------------------------------------------------GGCG-ATCCAGAGCGCTAGCTCTTCAAT---TTGCTGACTTTGAGTCTTGGCACTGGGAGAATTCACAGTTGACTTGAT-----TATTCTGTGGTTCTGCGGGTGCC-AAAACTTAAAAACCGGCTTTATACAA--CGATTTCTAAA-CAATTAC---AATTT---AAACA------------ATATAASizeHit CountTotal NormTotalM054

Female-body		V113

Male-body		V114

Embryo		V115

Head
....................................................................................................................................................CTTGGCACTGGGAGAATTCA...........................................................................................................................20118329.001832916762338910301
....................................................................................................................................................CTTGGCACTGGGAGAATTCACAG........................................................................................................................23115116.00151166147985325099
....................................................................................................................................................CTTGGCACTGGGAGAATTCACA.........................................................................................................................22114114.00141149225665335316
....................................................................................................................................................CTTGGCACTGGGAGAATTCAC..........................................................................................................................2119069.0090691019515246584
....................................................................................................................................................CTTGGCACTGGGAGAATTC............................................................................................................................1916278.00627811119205138
....................................................................................................................................................CTTGGCACTGGGAGAATT.............................................................................................................................181275.002750242249
....................................................................................................................................................CTTGGCACTGGGAGAATTT............................................................................................................................191171.001710490122
....................................................................................................................................................CTTGGCACTGGGAGAATTCACAGT.......................................................................................................................241121.00121059620
....................................................................................................................................................CTTGGCACTGGGAGAATTCT...........................................................................................................................201121.00121039082
.....................................................................................................................................................TTGGCACTGGGAGAATTCACAG........................................................................................................................22191.00912104930
.....................................................................................................................................................TTGGCACTGGGAGAATTCACA.........................................................................................................................21189.00893123539
.....................................................................................................................................................TTGGCACTGGGAGAATTCA...........................................................................................................................19187.0087126060
....................................................................................................................................................CTTGGCACTGGGAGAATTCACAGA.......................................................................................................................24173.00730103924
....................................................................................................................................................CTTGGCACTGGGAGAATTA............................................................................................................................19150.0050015035
.....................................................................................................................................................TTGGCACTGGGAGAATTCAC..........................................................................................................................20146.004628135
....................................................................................................................................................CTTGGCACTGGGAGAATTCAA..........................................................................................................................21144.0044015128
.....................................................................................................................................................TTGGCACTGGGAGAATTC............................................................................................................................18139.003901038
....................................................................................................................................................CTTGGCACTGGGAGAATTCACG.........................................................................................................................22132.0032051611
....................................................................................................................................................CTTGGCACTGGGAGAATTCACAA........................................................................................................................23125.002503616
....................................................................................................................................................CTTGGCACTGGGAGAATTCACAGC.......................................................................................................................24124.002401194
....................................................................................................................................................CTTGGCACTGGGAGAATTCACT.........................................................................................................................22123.002307115
....................................................................................................................................................CTTGGCACTGGGAGAATTCG...........................................................................................................................20119.001909010
....................................................................................................................................................CTTGGCACTGGGAGAATTCC...........................................................................................................................20115.001503210
....................................................................................................................................................CTTGGCACTGGGAGAATTCACC.........................................................................................................................22112.00120363
....................................................................................................................................................CTTGGCACTGGGAGAATTCAT..........................................................................................................................21111.00110308
....................................................................................................................................................CTTGGCACTGGGAGAATTCACAGTT......................................................................................................................25110.00100073
....................................................................................................................................................CTTGGCACTGGGAGAATTCACAT........................................................................................................................23110.00100226
................................................................................................................................................................................................GTGGTTCTGCGGGTGCC-A................................................................................1818.0080008
....................................................................................................................................................CTTGGCACTGGGAGAATTG............................................................................................................................1917.0070700
....................................................................................................................................................CTTGGCACTGGGAGAATTCACAC........................................................................................................................2316.0060024
....................................................................................................................................................CTTGGCACTGGGAGAATTCACAGTA......................................................................................................................2515.0050032
....................................................................................................................................................CTTGGCACTGGGAGAATTTT...........................................................................................................................2054.202101308
................................................................................................................................................................................................GTGGTTCTGCGGGTGCC-AAAAC............................................................................2214.0043001
....................................................................................................................................................CTTGGCACTGGGAGAATTCAG..........................................................................................................................2114.0040121
...................................................................................................................................................TCTTGGCACTGGGAGAATTCA...........................................................................................................................2114.0040004
........................................................................................................................................................GCACTGGGAGAATTCACA.........................................................................................................................1814.0040031
...............................................................................................................................................................................................TGTGGTTCTGCGGGTGCC-A................................................................................1913.0030012
....................................................................................................................................................CTTGGCACTGGGAGAATTCACAGAA......................................................................................................................2513.0030030
....................................................................................................................................................CTTGGCACTGGGAGAATTCATT.........................................................................................................................2213.0030102
.........................................................................................................................................................CACTGGGAGAATTCACAG........................................................................................................................1813.0031011
.....................................................................................................................................................TTGGCACTGGGAGAATTCACAGT.......................................................................................................................2313.0030030
................................................................................................................................................................................................GTGGTTCTGCGGGTGCC-AAAA.............................................................................2112.0020011
........................................................................................................................................................GCACTGGGAGAATTCACAG........................................................................................................................1912.0020002
droYak3
TAAGCGATCTCAGGTG---ATCTCC-GC---TTAG---------AAACTGG-------CG-----------------------------------------------ATCCAGAACGATAGCTCTTCAAT---CTGCTGACTTTGAGTCTTGGCACTGGGAGAATTCACAGTTGACTTTAT-----TATTCTGTGGTTCTGCGGGTGCC-AAAATTTAATCAACGGCTCTATACAA--CGATTTCTAAG-AACTA-A---AATTT---AAGCA------------ACATAASizeHit CountTotal NormTotalM026

Head		M043

Female-body		M056

Embryo		V046

Embryo		V052

Head		V058

Head		V120

Male-body		SRR1275488

Male larvae		SRR1275486

Male prepupae		SRR1275484

Male prepupae		GSM1528802

follicle cells
....................................................................................................................................................CTTGGCACTGGGAGAATTCA...........................................................................................................................2021596.50319328719446125513921000
....................................................................................................................................................CTTGGCACTGGGAGAATTCACAG........................................................................................................................2321357.50271520275631305601396000010
....................................................................................................................................................CTTGGCACTGGGAGAATTCAC..........................................................................................................................212862.501725219219502016107300110
....................................................................................................................................................CTTGGCACTGGGAGAATTCACA.........................................................................................................................222613.001226133549225742176130000
....................................................................................................................................................CTTGGCACTGGGAGAATTC............................................................................................................................192397.007942713011554021960000
....................................................................................................................................................CTTGGCACTGGGAGAATTCACAGT.......................................................................................................................24221.50430127131010000
....................................................................................................................................................CTTGGCACTGGGAGAATT.............................................................................................................................18220.50411100132320010
................................................................................................................................................................................................GTGGTTCTGCGGGTGCC-AAAAT............................................................................22217.5035012770000000
.....................................................................................................................................................TTGGCACTGGGAGAATTCACAG........................................................................................................................22214.002806472090000
....................................................................................................................................................CTTGGCACTGGGAGAATTCT...........................................................................................................................20211.5023010041350000
.....................................................................................................................................................TTGGCACTGGGAGAATTCA...........................................................................................................................19211.5023011001470000
....................................................................................................................................................CTTGGCACTGGGAGAATTCAA..........................................................................................................................21211.0022010021450000
.....................................................................................................................................................TTGGCACTGGGAGAATTCAC..........................................................................................................................2029.0018012010320000
....................................................................................................................................................CTTGGCACTGGGAGAATTCACAC........................................................................................................................2328.0016101400100000
....................................................................................................................................................CTTGGCACTGGGAGAATTCC...........................................................................................................................2027.5015000021300000
....................................................................................................................................................CTTGGCACTGGGAGAATTT............................................................................................................................1927.501501002930000
.....................................................................................................................................................TTGGCACTGGGAGAATTCACA.........................................................................................................................2127.501511022270000
....................................................................................................................................................CTTGGCACTGGGAGAATTCACAGA.......................................................................................................................2426.001200461010000
................................................................................................................................................................................................GTGGTTCTGCGGGTGCC-AAAA.............................................................................2124.50900450000000
....................................................................................................................................................CTTGGCACTGGGAGAATTCACAGC.......................................................................................................................2423.50700610000000
....................................................................................................................................................CTTGGCACTGGGAGAATTCG...........................................................................................................................2023.00600001410000
....................................................................................................................................................CTTGGCACTGGGAGAATTCACC.........................................................................................................................2222.50500021110000
....................................................................................................................................................CTTGGCACTGGGAGAATTA............................................................................................................................1922.50510000400000
....................................................................................................................................................CTTGGCACTGGGAGAATTCAT..........................................................................................................................2122.50500001400000
....................................................................................................................................................CTTGGCACTGGGAGAATTCACT.........................................................................................................................2222.50500001040000
.........................................................................................................................................................CACTGGGAGAATTCACAG........................................................................................................................1822.00420110000000
.....................................................................................................................................................TTGGCACTGGGAGAATTCACAGT.......................................................................................................................2322.00400220000000
....................................................................................................................................................CTTGGCACTGGGAGAATTCACAT........................................................................................................................2321.50300110010000
....................................................................................................................................................CTTGGCACTGGGAGAATTCACG.........................................................................................................................2221.50310010100000
......................................................................................................................................................TGGCACTGGGAGAATTCACAG........................................................................................................................2121.50301200000000
....................................................................................................................................................CTTGGCACTGGGAGAATTCACAGTT......................................................................................................................2521.50300120000000
....................................................................................................................................................CTTGGCACTGGGAGAATTCACAA........................................................................................................................2321.00200001010000
.....................................................................................................................................................TTGGCACTGGGAGAATTCACAGC.......................................................................................................................2321.00200200000000
................................................................................................................................................................................................GTGGTTCTGCGGGTGCC-AAAATT...........................................................................2321.00200110000000
................................................................................................................................................................................................GTGGTTCTGCGGGTGCC-AAAAC............................................................................2221.00200200000000
....................................................................................................................................................CTTGGCACTGGGAGAATTCACAGTA......................................................................................................................2521.00200110000000
....................................................................................................................................................CTTGGCACTGGGAGAAT..............................................................................................................................1721.00200000200000
................................................................................................................................................................................................GTGGTTCTGCGGGTGCC-AAA..............................................................................2021.00201010000000
................................................................................................................................................................................................GTGGTTCTGCGGGTGCC-A................................................................................1821.00202000000000
..............................................................................................................................CAAT---CTGCTGACTTTGAGC...............................................................................................................................................1921.00200200000000
....................................................................................................................................................CTTGGCACTGGGAGAATTCTT..........................................................................................................................2120.50100000100000
...............................................................................................................................................................................................TGTGGTTCTGCGGGTGCC-AA...............................................................................2020.50100000100000
droEre2
TGA-----------------TCTCC-GC---TTAGCC-------A--CT-----------------------------------------------------GGCG-ATTCAAAC-------------CA---TAGCTGACTTTGAGTCTTGGCACTGGGAGAATTCACAGTTGATTTTAT-----TATTCTGTGGTTCTGCGGGTGCC-AAAATTTAAT-----------------------------------------------------------------------SizeHit CountTotal NormTotalM055

Female-body		M057

Embryo		V060

Head		V040

Embryo		V107

Male-body		V108

Head		GSM1528801

follicle cells
....................................................................................................................................................CTTGGCACTGGGAGAATTCACAG........................................................................................................................23121507.00215073713284520652065163630
....................................................................................................................................................CTTGGCACTGGGAGAATTCAC..........................................................................................................................21119123.00191232248351852319157580
....................................................................................................................................................CTTGGCACTGGGAGAATTCA...........................................................................................................................20115856.0015856260687475095100010
....................................................................................................................................................CTTGGCACTGGGAGAATTCACA.........................................................................................................................22115054.001505431208075082250114380
....................................................................................................................................................CTTGGCACTGGGAGAATTC............................................................................................................................1916373.006373201356165145790
....................................................................................................................................................CTTGGCACTGGGAGAATT.............................................................................................................................181298.0029821130961860
....................................................................................................................................................CTTGGCACTGGGAGAATTCACAT........................................................................................................................231261.002610052132320
....................................................................................................................................................CTTGGCACTGGGAGAATTCACAA........................................................................................................................231175.00175008621590
....................................................................................................................................................CTTGGCACTGGGAGAATTCACAC........................................................................................................................231167.00167031821530
.....................................................................................................................................................TTGGCACTGGGAGAATTCACAG........................................................................................................................221124.001244181413840
....................................................................................................................................................CTTGGCACTGGGAGAATTCAA..........................................................................................................................211110.00110006012920
.....................................................................................................................................................TTGGCACTGGGAGAATTCAC..........................................................................................................................201108.00108207216810
.....................................................................................................................................................TTGGCACTGGGAGAATTCA...........................................................................................................................19185.0085007025530
....................................................................................................................................................CTTGGCACTGGGAGAATTT............................................................................................................................19175.0075103027440
....................................................................................................................................................CTTGGCACTGGGAGAATTCACAGA.......................................................................................................................24169.006910435560
.....................................................................................................................................................TTGGCACTGGGAGAATTCACA.........................................................................................................................21164.006420628460
....................................................................................................................................................CTTGGCACTGGGAGAATTCT...........................................................................................................................20150.0050001014350
....................................................................................................................................................CTTGGCACTGGGAGAATTA............................................................................................................................19142.004200205350
....................................................................................................................................................CTTGGCACTGGGAGAATTCACAGT.......................................................................................................................24140.004000373270
....................................................................................................................................................CTTGGCACTGGGAGAATTCACT.........................................................................................................................22137.003700214300
.....................................................................................................................................................TTGGCACTGGGAGAATTC............................................................................................................................18125.002500106180
....................................................................................................................................................CTTGGCACTGGGAGAATTCAT..........................................................................................................................21122.002200103180
....................................................................................................................................................CTTGGCACTGGGAGAATTCACG.........................................................................................................................22121.002100013170
....................................................................................................................................................CTTGGCACTGGGAGAATTCACC.........................................................................................................................22120.00200174080
....................................................................................................................................................CTTGGCACTGGGAGAATTCC...........................................................................................................................20116.001600402100
................................................................................................................................................................................................GTGGTTCTGCGGGTGCC-AAAAT............................................................................22115.00153304050
....................................................................................................................................................CTTGGCACTGGGAGAATTCG...........................................................................................................................2028.501700104120
....................................................................................................................................................CTTGGCACTGGGAGAATTCACAGC.......................................................................................................................2416.0060002130
....................................................................................................................................................CTTGGCACTGGGAGAATTCACAGTT......................................................................................................................2516.0060100140
......................................................................................................................................................TGGCACTGGGAGAATTCACAG........................................................................................................................2116.0060001050
....................................................................................................................................................CTTGGCACTGGGAGAATTCACAGG.......................................................................................................................2415.0050000230
................................................................................................................................................................................................GTGGTTCTGCGGGTGCC-AAAA.............................................................................2115.0050002030
....................................................................................................................................................CTTGGCACTGGGAGAATTCACCT........................................................................................................................2315.0050005000
.......................................................................................................................................................GGCACTGGGAGAATTCACAG........................................................................................................................2014.0040010030
....................................................................................................................................................CTTGGCACTGGGAGAATTCACAGTA......................................................................................................................2514.0040011110
....................................................................................................................................................CTTGGCACTGGGAGAATTCAG..........................................................................................................................2114.0040021010

Generated: 10/20/2015 at 11:47 PM