ID:

dgr-mir-1

 Coordinate:

scaffold_15126:6250416-6250502 +

 Confidence:

Known

 Class:

Unknown

 Genomic Locale:

intergenic

 [View on miRBase]

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-33.3 -32.9 -32.9

Flybase annnotation

pre_miRNA [Dgri\mir-1-RM]; miRNA [Dgri\miR-1-RA]

No Repeatable elements found

Sense Strand Reads

GACCTTAAAGTTAAGAGTGTGGTTTTTATGGTTTTTAAATTGTTTACTTGGCCTTTGAGAGTTCCATGCTTCCTTGCATTCAATAGTATATAAATAAGCATATGGAATGTAAAGAAGTATGGAGCGAAATCTGGCGAAACATCATAAAAAAATGACAACATAAAAAATATTATGTGCGTGCCGACAA

************************************************..(((.......((((((((((((.((((((((.(((((..........)).))).)))))))).)))))))))))).......)))....************************************************ 		Read size # Mismatch Hit Count Total Norm Total M041

female body

 V109

male body
......................................................................................................TGGAATGTAAAGAAGTATGGAG............................................................... 22 0 1 1015272.00 1015272 645154 370118
.......................................................................................................GGAATGTAAAGAAGTATGGAG............................................................... 21 0 1 72469.00 72469 72314 155
......................................................................................................TGGAATGTAAAGAAGTATGGA................................................................ 21 0 1 42096.00 42096 24516 17580
......................................................................................................TGGAATGTAAAGAAGTATGGAGT.............................................................. 23 1 1 18497.00 18497 8009 10488
......................................................................................................TGGAATGTAAAGAAGTATGGAGA.............................................................. 23 1 1 5980.00 5980 3049 2931
......................................................................................................TGGAATGTAAAGAAGTACGGAG............................................................... 22 1 1 4261.00 4261 99 4162
......................................................................................................TGGAATGTAAAGAAGTATGG................................................................. 20 0 1 3777.00 3777 1848 1929
......................................................................................................TGGAATGTAAAGAAGTAAGGAG............................................................... 22 1 1 3355.00 3355 36 3319
.......................................................................................................GGAATGTAAAGAAGTATGGA................................................................ 20 0 1 2789.00 2789 2784 5
........................................................................................................GAATGTAAAGAAGTATGGAG............................................................... 20 0 1 2129.00 2129 2083 46
......................................................................................................TGGAATGTAAAGAAGTAGGGAG............................................................... 22 1 1 2048.00 2048 11 2037
......................................................................................................TGGAATGTAAAGAAGTATGGAC............................................................... 22 1 1 1437.00 1437 597 840
.....................................................................................................CTGGAATGTAAAGAAGTATGGAG............................................................... 23 1 1 1416.00 1416 585 831
...............................................................CCATGCTTCCTTGCATTCAATA...................................................................................................... 22 0 1 1381.00 1381 1376 5
......................................................................................................TGGAATGTCAAGAAGTATGGAG............................................................... 22 1 1 1307.00 1307 2 1305
......................................................................................................TGTAATGTAAAGAAGTATGGAG............................................................... 22 1 1 1301.00 1301 454 847
......................................................................................................TGAAATGTAAAGAAGTATGGAG............................................................... 22 1 1 1249.00 1249 225 1024
......................................................................................................TGGAATGTAAGGAAGTATGGAG............................................................... 22 1 1 1239.00 1239 633 606
......................................................................................................TGCAATGTAAAGAAGTATGGAG............................................................... 22 1 1 1157.00 1157 150 1007
......................................................................................................TGGAATGTAAAGAAGTATGGAT............................................................... 22 1 1 1049.00 1049 384 665
......................................................................................................TGGAATCTAAAGAAGTATGGAG............................................................... 22 1 1 958.00 958 91 867
.......................................................................................................GGAATGTAAAGAAGTATGGAGT.............................................................. 22 1 1 955.00 955 945 10
......................................................................................................TGGAACGTAAAGAAGTATGGAG............................................................... 22 1 1 938.00 938 77 861
......................................................................................................TGGAATGTTAAGAAGTATGGAG............................................................... 22 1 1 930.00 930 4 926
......................................................................................................TGGAATGTAAAGAAGTATGGAA............................................................... 22 1 1 909.00 909 409 500
......................................................................................................TGGAATATAAAGAAGTATGGAG............................................................... 22 1 1 868.00 868 86 782
......................................................................................................TTGAATGTAAAGAAGTATGGAG............................................................... 22 1 1 738.00 738 518 220
......................................................................................................TGGAATGTAAAGAAGTATG.................................................................. 19 0 1 737.00 737 615 122
......................................................................................................TGGAATGTAAAGAAGTATGGCG............................................................... 22 1 1 716.00 716 15 701
......................................................................................................TGGAATTTAAAGAAGTATGGAG............................................................... 22 1 1 674.00 674 285 389
......................................................................................................TGGAATGTGAAGAAGTATGGAG............................................................... 22 1 1 657.00 657 79 578
......................................................................................................TGGAAAGTAAAGAAGTATGGAG............................................................... 22 1 1 639.00 639 9 630
......................................................................................................TGGAATGTAAAGAAGTATGCAG............................................................... 22 1 1 639.00 639 53 586
......................................................................................................TGGAATGTAAAGAAGCATGGAG............................................................... 22 1 1 603.00 603 171 432
......................................................................................................TGGAATGTAAAGAGGTATGGAG............................................................... 22 1 1 596.00 596 261 335
......................................................................................................TGGAATGTAAAGAAGTATCGAG............................................................... 22 1 1 552.00 552 59 493
......................................................................................................TGGAATGTAAAGAAGTATGGAGTT............................................................. 24 2 1 547.00 547 223 324
......................................................................................................TGGAATGCAAAGAAGTATGGAG............................................................... 22 1 1 531.00 531 95 436
.......................................................................................................TGAATGTAAAGAAGTATGGAG............................................................... 21 1 1 529.00 529 175 354
......................................................................................................TGGAGTGTAAAGAAGTATGGAG............................................................... 22 1 1 478.00 478 201 277
......................................................................................................TGGAATGTAAAGAATTATGGAG............................................................... 22 1 1 472.00 472 304 168
......................................................................................................TGGAATGTAAAGAAGTATGGAGC.............................................................. 23 0 1 470.00 470 289 181
......................................................................................................TGGCATGTAAAGAAGTATGGAG............................................................... 22 1 1 449.00 449 13 436
......................................................................................................TGGAATGTAGAGAAGTATGGAG............................................................... 22 1 1 447.00 447 208 239
......................................................................................................TGGACTGTAAAGAAGTATGGAG............................................................... 22 1 1 447.00 447 10 437
......................................................................................................CGGAATGTAAAGAAGTATGGAG............................................................... 22 1 1 436.00 436 182 254
......................................................................................................TGGAATGTAAAGAAGTATGGAGG.............................................................. 23 1 1 435.00 435 378 57
......................................................................................................TGGAATGTAAAGAAGTATGTAG............................................................... 22 1 1 422.00 422 150 272
......................................................................................................TCGAATGTAAAGAAGTATGGAG............................................................... 22 1 1 419.00 419 142 277
......................................................................................................TGGAAGGTAAAGAAGTATGGAG............................................................... 22 1 1 407.00 407 5 402
......................................................................................................TGGGATGTAAAGAAGTATGGAG............................................................... 22 1 1 401.00 401 182 219
.....................................................................................................TTGGAATGTAAAGAAGTATGGAG............................................................... 23 1 1 387.00 387 386 1
......................................................................................................TGGAATGTAAAGAAGTATTGAG............................................................... 22 1 1 373.00 373 132 241
......................................................................................................TGGAATGTAAAGAAGAATGGAG............................................................... 22 1 1 367.00 367 261 106
......................................................................................................TGGAATGTAAAGAACTATGGAG............................................................... 22 1 1 353.00 353 93 260
......................................................................................................TGGAATGTAAAGAAGTATAGAG............................................................... 22 1 1 348.00 348 84 264
.......................................................................................................GGAATGTAAAGAAGTATGGAGA.............................................................. 22 1 1 347.00 347 345 2
.....................................................................................................ATGGAATGTAAAGAAGTATGGAG............................................................... 23 0 1 346.00 346 341 5
......................................................................................................TGGAATGTAAAGAAGTATGAAG............................................................... 22 1 1 336.00 336 50 286
......................................................................................................TGGAATGTAACGAAGTATGGAG............................................................... 22 1 1 333.00 333 11 322
......................................................................................................TGGAATGTAAATAAGTATGGAG............................................................... 22 1 1 332.00 332 184 148
...............................................................CCATGCTTCCTTGCATTCAAT....................................................................................................... 21 0 1 332.00 332 329 3
......................................................................................................TGGAATGTAAAGAAGTATGGGG............................................................... 22 1 1 330.00 330 154 176
......................................................................................................TGGAATGTAAACAAGTATGGAG............................................................... 22 1 1 330.00 330 79 251
......................................................................................................TGGAATGTAAAGAAGTATGAG................................................................ 21 2 1 302.00 302 26 276
......................................................................................................TGGAATGTAAAGACGTATGGAG............................................................... 22 1 1 295.00 295 11 284
......................................................................................................TGGAATGTACAGAAGTATGGAG............................................................... 22 1 1 293.00 293 4 289
......................................................................................................TGGAATGTAAAGAAGTGTGGAG............................................................... 22 1 1 271.00 271 121 150
......................................................................................................TGGAATGTAAAAAAGTATGGAG............................................................... 22 1 1 246.00 246 61 185
......................................................................................................TGGAATGTAAAGAAGTCTGGAG............................................................... 22 1 1 244.00 244 1 243
......................................................................................................TGGAATGTAAAGCAGTATGGAG............................................................... 22 1 1 237.00 237 3 234
.....................................................................................................GTGGAATGTAAAGAAGTATGGAG............................................................... 23 1 1 226.00 226 224 2
..........................................................................................................ATGTAAAGAAGTATGGAG............................................................... 18 0 1 222.00 222 174 48
......................................................................................................TGGAATGTAGGGAAGTATGGAG............................................................... 22 2 1 215.00 215 60 155
......................................................................................................TAGAATGTAAAGAAGTATGGAG............................................................... 22 1 1 204.00 204 68 136
.......................................................................................................GGAATGTAAAGAAGTATGG................................................................. 19 0 1 192.00 192 191 1
......................................................................................................TGGAATGTAAAGGAGTATGGAG............................................................... 22 1 1 191.00 191 76 115
......................................................................................................TGGAATGTAAAGAAGTACGGA................................................................ 21 1 1 187.00 187 4 183
.........................................................................................................AATGTAAAGAAGTATGGAG............................................................... 19 0 1 180.00 180 172 8
......................................................................................................TGGAATGAAAAGAAGTATGGAG............................................................... 22 1 1 173.00 173 78 95
................................................................CATGCTTCCTTGCATTCAATA...................................................................................................... 21 0 1 165.00 165 165 0
......................................................................................................TGGAATGTAAAGAAGTAAGGA................................................................ 21 1 1 162.00 162 1 161
......................................................................................................TGGAATGTAAAGAAATATGGAG............................................................... 22 1 1 157.00 157 46 111
......................................................................................................TGGAATGTAAAGAAGGATGGAG............................................................... 22 1 1 148.00 148 104 44
......................................................................................................AGGAATGTAAAGAAGTATGGAG............................................................... 22 1 1 145.00 145 133 12
......................................................................................................GGGAATGTAAAGAAGTATGGAG............................................................... 22 1 1 127.00 127 108 19
......................................................................................................TGGAATGTAAAGAAGTACGGAGT.............................................................. 23 2 1 122.00 122 1 121
......................................................................................................TGGAATGTAAAGAAGTATGGAGAA............................................................. 24 2 1 103.00 103 43 60
......................................................................................................TGGAATGTAAAGAAGTATGGAGTA............................................................. 24 2 1 101.00 101 79 22
......................................................................................................TGGAATGTAAAGAAGTAGGGA................................................................ 21 1 1 99.00 99 0 99
......................................................................................................TGGATTGTAAAGAAGTATGGAG............................................................... 22 1 1 96.00 96 22 74
......................................................................................................TGGAATGTAAAGAAGTATGGAGTTT............................................................ 25 3 1 93.00 93 28 65
......................................................................................................TGGAATGTAAAGAAGTAAGGAGT.............................................................. 23 2 1 89.00 89 1 88
......................................................................................................TGGAATGTAAAGAAGTAT................................................................... 18 0 1 83.00 83 79 4
.....................................................................................................CTGGAATGTAAAGAAGTATGGA................................................................ 22 1 1 83.00 83 25 58
........................................................................................................TAATGTAAAGAAGTATGGAG............................................................... 20 1 1 82.00 82 17 65
........................................................................................................GAATGTAAAGAAGTATGGA................................................................ 19 0 1 81.00 81 77 4
.......................................................................................................GGAATGTAAAGAAGTATG.................................................................. 18 0 1 80.00 80 79 1
......................................................................................................TGGAATGTCAAGAAGTATGGA................................................................ 21 1 1 78.00 78 0 78
....................................................................................................TCTGGAATGTAAAGAAGTATGGAG............................................................... 24 1 1 73.00 73 8 65
......................................................................................................TGAAATGTAAAGAAGTATGGA................................................................ 21 1 1 70.00 70 10 60
......................................................................................................TGTAATGTAAAGAAGTATGGA................................................................ 21 1 1 65.00 65 19 46
.......................................................................................................GGAATGTAAGGAAGTATGGAG............................................................... 21 1 1 64.00 64 64 0
......................................................................................................TGGAATGTAAAGAAGTATGGTG............................................................... 22 1 1 64.00 64 18 46
......................................................................................................TGGAATGTAATGAAGTATGGAG............................................................... 22 1 1 60.00 60 21 39
......................................................................................................TGGTATGTAAAGAAGTATGGAG............................................................... 22 1 1 58.00 58 17 41
...............................................................CCATGCTTCCTTGCATTCA......................................................................................................... 19 0 1 57.00 57 57 0
.......................................................................................................GGAATGTAAAGAAGTATGGAA............................................................... 21 1 1 57.00 57 56 1
...............................................................CCATGCTTCCTTGCATTCAA........................................................................................................ 20 0 1 56.00 56 56 0
.......................................................................................................GGAATGTAAAGAAGTATGGAC............................................................... 21 1 1 54.00 54 54 0
......................................................................................................TGCAATGTAAAGAAGTATGGA................................................................ 21 1 1 54.00 54 5 49
......................................................................................................TGGAATGTAAAGAAGTATGGAGTG............................................................. 24 1 1 53.00 53 53 0
......................................................................................................TGGAATCTAAAGAAGTATGGA................................................................ 21 1 1 52.00 52 2 50
......................................................................................................TGGAATGTAAAGAAGTATGGAAA.............................................................. 23 2 1 52.00 52 23 29
......................................................................................................TGGAATGTAAAGAAGTAGGGAGT.............................................................. 23 2 1 51.00 51 0 51
.......................................................................................................GGAATGTAAAGAAGTATGGAGG.............................................................. 22 1 1 50.00 50 50 0
.......................................................................................................CGAATGTAAAGAAGTATGGAG............................................................... 21 1 1 49.00 49 17 32
......................................................................................................TGGAATGTAAAGAAGTTTGGAG............................................................... 22 1 1 48.00 48 20 28
......................................................................................................TGGAATGTAAAGAAGTATGGAGAT............................................................. 24 2 1 48.00 48 23 25
......................................................................................................TGGAACGTAAAGAAGTATGGA................................................................ 21 1 1 46.00 46 3 43
......................................................................................................TGAAATGTAAAGAAGTATGGAGT.............................................................. 23 2 1 45.00 45 1 44
......................................................................................................TGTAATGTAAAGAAGTATGGAGT.............................................................. 23 2 1 45.00 45 6 39
......................................................................................................TGGAATGGAAAGAAGTATGGAG............................................................... 22 1 1 45.00 45 28 17
......................................................................................................TGGAATGTAAGGAAGTATGGA................................................................ 21 1 1 45.00 45 22 23
.......................................................................................................GTAATGTAAAGAAGTATGGAG............................................................... 21 1 1 44.00 44 42 2
......................................................................................................TGGAATGTATAGAAGTATGGAG............................................................... 22 1 1 44.00 44 16 28
.......................................................................................................GGAATGTAAAGAAGTATGGAT............................................................... 21 1 1 42.00 42 41 1
......................................................................................................TGGAATGTCAAGAAGTATGGAGT.............................................................. 23 2 1 42.00 42 0 42
......................................................................................................TGGAATATAAAGAAGTATGGA................................................................ 21 1 1 42.00 42 2 40
.......................................................................................................GGAGTGTAAAGAAGTATGGAG............................................................... 21 1 1 39.00 39 39 0
.......................................................................................................GGAATGTAAAGAGGTATGGAG............................................................... 21 1 1 39.00 39 38 1
......................................................................................................TGGAATGTAAAGAAGTACGGAGA.............................................................. 23 2 1 38.00 38 0 38
......................................................................................................TGGAATGTAAAGATGTATGGAG............................................................... 22 1 1 38.00 38 13 25
.......................................................................................................GGAATGTAAAGAAGAATGGAG............................................................... 21 1 1 38.00 38 38 0
......................................................................................................TGGAATGTAAAGAAGTATGGC................................................................ 21 1 1 36.00 36 12 24
.......................................................................................................GGAATTTAAAGAAGTATGGAG............................................................... 21 1 1 36.00 36 36 0
......................................................................................................TGGAATGTAAAGAAGTATGGAGGC............................................................. 24 2 1 36.00 36 36 0
................................................................CATGCTTCCTTGCATTCAAT....................................................................................................... 20 0 1 35.00 35 35 0
......................................................................................................TTGAATGTAAAGAAGTATGGA................................................................ 21 1 1 35.00 35 18 17
.......................................................................................................GGAATGTAAAGAATTATGGAG............................................................... 21 1 1 34.00 34 34 0
......................................................................................................TGGAATATAAAGAAGTATGGAGT.............................................................. 23 2 1 34.00 34 0 34
......................................................................................................TGGAATGTAAAGAGGTATGGA................................................................ 21 1 1 33.00 33 13 20
........................................................................................................GAATGTAAAGAAGTATGGAGT.............................................................. 21 1 1 33.00 33 30 3
......................................................................................................TGGAGTGTAAAGAAGTATGGA................................................................ 21 1 1 31.00 31 10 21
......................................................................................................TCGAATGTAAAGAAGTATGGA................................................................ 21 1 1 31.00 31 10 21
......................................................................................................TGCAATGTAAAGAAGTATGGAGT.............................................................. 23 2 1 31.00 31 0 31
......................................................................................................TGGAATGTAAAGAAGTATGGG................................................................ 21 1 1 31.00 31 14 17
......................................................................................................TGGAATGTAAAGAAGCATGGA................................................................ 21 1 1 30.00 30 5 25
.......................................................................................................TGAATGTAAAGAAGTATGGA................................................................ 20 1 1 29.00 29 4 25
......................................................................................................TGGAATCTAAAGAAGTATGGAGT.............................................................. 23 2 1 29.00 29 3 26
......................................................................................................TGGAATGTTAAGAAGTATGGA................................................................ 21 1 1 29.00 29 2 27
.......................................................................................................TGGATGTAAAGAAGTATGGAG............................................................... 21 2 1 29.00 29 5 24
......................................................................................................TGGAAAGTAAAGAAGTATGGA................................................................ 21 1 1 28.00 28 1 27
......................................................................................................TGGAATGTGAAGAAGTATGGA................................................................ 21 1 1 28.00 28 2 26
......................................................................................................TGGAATGCAAAGAAGTATGGA................................................................ 21 1 1 27.00 27 5 22
......................................................................................................TGGAATGTAAAGAAGTATGGAGTC............................................................. 24 2 1 26.00 26 22 4
......................................................................................................TGGAATTTAAAGAAGTATGGA................................................................ 21 1 1 25.00 25 11 14
......................................................................................................TGAAATGTAAAGACGTATGGAG............................................................... 22 2 1 25.00 25 0 25
.......................................................................................................GGAATGTAAAGAAGTATGGAGC.............................................................. 22 0 1 25.00 25 25 0
....................................................................................................ATTGGAATGTAAAGAAGTATGGAG............................................................... 24 2 1 24.00 24 24 0
.......................................................................................................GGAATGTAGAGAAGTATGGAG............................................................... 21 1 1 24.00 24 24 0
......................................................................................................TGGAATGTAAAGAAGTATGGACT.............................................................. 23 2 1 24.00 24 7 17
.....................................................................................................CTGGAATGTAAAGAAGTATGGAGT.............................................................. 24 2 1 24.00 24 8 16
......................................................................................................TGGAATGTAAAGCAGTATGGA................................................................ 21 1 1 24.00 24 0 24
........................................................................................................GAATGTAAAGAAGTATGGAGA.............................................................. 21 1 1 23.00 23 19 4
......................................................................................................TGGAATGTAAAGAAGTAGGGAGA.............................................................. 23 2 1 23.00 23 0 23
......................................................................................................TGCAATGTAAAGAAGTCTGGAG............................................................... 22 2 1 23.00 23 0 23
.......................................................................................................GGAATGTAAATAAGTATGGAG............................................................... 21 1 1 23.00 23 23 0
......................................................................................................TGCAATGTAAAGACGTATGGAG............................................................... 22 2 1 23.00 23 0 23
....................................................................................................AATGGAATGTAAAGAAGTATGGAG............................................................... 24 1 1 23.00 23 11 12
.......................................................................................................GGAATGTAAAGAAGTATGTAG............................................................... 21 1 1 23.00 23 23 0
.................................................................ATGCTTCCTTGCATTCAATA...................................................................................................... 20 0 1 23.00 23 23 0
......................................................................................................TGGACTGTAAAGAAGTATGGAGT.............................................................. 23 2 1 23.00 23 1 22
......................................................................................................TGGAATGTACAGAAGTATGGA................................................................ 21 1 1 22.00 22 0 22
......................................................................................................TGGAATGTAAAGAAGTAAGGAGA.............................................................. 23 2 1 22.00 22 0 22
......................................................................................................TGGAATGTAAAGTAGTATGGAG............................................................... 22 1 1 22.00 22 14 8
.......................................................................................................GCAATGTAAAGAAGTATGGAG............................................................... 21 1 1 22.00 22 21 1
......................................................................................................TGGAATGTTAAGAAGTATGGAGT.............................................................. 23 2 1 21.00 21 0 21
.....................................................................................................CTGGAATGTAAAGAAGTATGGAGA.............................................................. 24 2 1 21.00 21 3 18
......................................................................................................TGAAATGTAAAGAAGTCTGGAG............................................................... 22 2 1 21.00 21 0 21
.......................................................................................................GGAATGTAAAGAAGTATTGAG............................................................... 21 1 1 21.00 21 17 4
......................................................................................................TGGAATGTAACGAAGTATGGA................................................................ 21 1 1 21.00 21 1 20
...................................................................................................ATCTGGAATGTAAAGAAGTATGGAG............................................................... 25 1 1 21.00 21 3 18
......................................................................................................TGGAACGTAAAGAAGTATGGAGT.............................................................. 23 2 1 21.00 21 0 21
.....................................................................................................TTGGAATGTAAAGAAGTATGGA................................................................ 22 1 1 21.00 21 21 0
......................................................................................................TGGAATGTAAAGACGTATGGA................................................................ 21 1 1 20.00 20 0 20
.......................................................................................................GGAATGTAAAGAAGTATGGAGTT............................................................. 23 2 1 20.00 20 19 1
......................................................................................................TGGAATGTAAGGAAGTATGGAGT.............................................................. 23 2 1 20.00 20 8 12
......................................................................................................TGGAATGTAAAGAAGTACGG................................................................. 20 1 1 20.00 20 0 20
......................................................................................................CGGAATGTAAAGAAGTATGGA................................................................ 21 1 1 20.00 20 4 16
......................................................................................................TGGAATGTAAAGAAGTATGGATT.............................................................. 23 2 1 20.00 20 7 13
......................................................................................................TGGAAAGTAAAGAAGTATGGAGT.............................................................. 23 2 1 19.00 19 0 19
.....................................................................................................ATGGAATGTAAAGAAGTATGGA................................................................ 22 0 1 19.00 19 15 4
......................................................................................................TGGAATGTAAAGAGGTATGGAGT.............................................................. 23 2 1 19.00 19 7 12
......................................................................................................TGGAATGTAAAGAAGTATGGT................................................................ 21 1 1 19.00 19 6 13
.......................................................................................................GGAATGTAAAGAAGTATGGGG............................................................... 21 1 1 19.00 19 19 0
.......................................................................................................GGAATGTAAAGAAGCATGGAG............................................................... 21 1 1 19.00 19 19 0
......................................................................................................TGGAATGTAAAGAAGTATGGAGGG............................................................. 24 1 1 19.00 19 19 0
.......................................................................................................GGGATGTAAAGAAGTATGGAG............................................................... 21 1 1 18.00 18 17 1
......................................................................................................TGGCATGTAAAGAAGTATGGA................................................................ 21 1 1 18.00 18 0 18
......................................................................................................TGGAATGTAAAGAAGTATGGTT............................................................... 22 2 1 17.00 17 1 16
......................................................................................................TTGAATGTAAAGAAGTATGGAGT.............................................................. 23 2 1 17.00 17 4 13
......................................................................................................TGGAATGTAAAGAAGCATGGAGT.............................................................. 23 2 1 17.00 17 2 15
....................................................................................................ACTGGAATGTAAAGAAGTATGGAG............................................................... 24 2 1 17.00 17 17 0
.......................................................................................................GGAATGTAAAGAAGTATAGAG............................................................... 21 1 1 16.00 16 15 1
......................................................................................................TGGAATGTAAAGAAGTATCGA................................................................ 21 1 1 16.00 16 2 14
......................................................................................................TGGAATGTAAAGAAGTATGGAGCA............................................................. 24 1 1 16.00 16 16 0
........................................................................................................AAATGTAAAGAAGTATGGAG............................................................... 20 1 1 16.00 16 0 16
......................................................................................................TGGAATGTGTAGAAGTATGGAG............................................................... 22 2 1 16.00 16 0 16
......................................................................................................TGGACTGTAAAGAAGTATGGA................................................................ 21 1 1 15.00 15 0 15
......................................................................................................TGGAATGTAAAGAAGTCTGGA................................................................ 21 1 1 15.00 15 0 15
.......................................................................................................GGAATGTAAAGAAGGATGGAG............................................................... 21 1 1 15.00 15 15 0
......................................................................................................TGGAATGTAGAGAAGTATGGA................................................................ 21 1 1 15.00 15 6 9
......................................................................................................TGGGATGTAAAGAAGTATGGA................................................................ 21 1 1 15.00 15 10 5
......................................................................................................TGGAATGTAAAGAAGAATGGA................................................................ 21 1 1 15.00 15 10 5
.......................................................................................................TGAATGTAAAGAAGTATGGAGT.............................................................. 22 2 1 15.00 15 2 13
....................................................................................................TTTGGAATGTAAAGAAGTATGGAG............................................................... 24 1 1 15.00 15 14 1
.......................................................................................................GAAATGTAAAGAAGTATGGAG............................................................... 21 1 1 15.00 15 15 0
......................................................................................................TGGAGTGTAAAGAAGTATGGAGT.............................................................. 23 2 1 15.00 15 4 11
......................................................................................................TGAAATGTAAAGAAGCATGGAG............................................................... 22 2 1 15.00 15 0 15
......................................................................................................TGGAAGGTAAAGAAGTATGGA................................................................ 21 1 1 15.00 15 0 15
......................................................................................................TGGAATGTAAAGAAGTATGGAGAC............................................................. 24 2 1 14.00 14 14 0
......................................................................................................TGGAATGTAAAGAAGTATGGACA.............................................................. 23 2 1 14.00 14 6 8
......................................................................................................TGGAATGTAAAGAAGTATGTA................................................................ 21 1 1 14.00 14 3 11
......................................................................................................TGGAATGTAAAGAAGTATAGA................................................................ 21 1 1 14.00 14 5 9
......................................................................................................TGGAATCTAAAGAAGTATGGAGA.............................................................. 23 2 1 13.00 13 2 11
......................................................................................................TGGAATGTAAAGAACTATGGA................................................................ 21 1 1 13.00 13 3 10
......................................................................................................TGGAATGTGAAGAAGTATGGAGT.............................................................. 23 2 1 13.00 13 1 12
......................................................................................................TGGAATGTCAAGAAGTATGG................................................................. 20 1 1 13.00 13 0 13
......................................................................................................TGGAATGTAAAGAAGTATGGAGAG............................................................. 24 1 1 13.00 13 12 1
....................................................................................................GCTGGAATGTAAAGAAGTATGGAG............................................................... 24 2 1 13.00 13 13 0
......................................................................................................TGGAATGTAAAGAAGTAAGG................................................................. 20 1 1 13.00 13 0 13
....................................................................................................GTTGGAATGTAAAGAAGTATGGAG............................................................... 24 2 1 13.00 13 13 0
......................................................................................................TGTAATGTAAAGACGTATGGAG............................................................... 22 2 1 13.00 13 0 13
......................................................................................................TGGAATGTAAAGAAGTAGGG................................................................. 20 1 1 12.00 12 0 12
......................................................................................................TGGAATGCAAAGAAGTATGGAGT.............................................................. 23 2 1 12.00 12 1 11
......................................................................................................TGGAATGTAAAGAAGTATGGAGCT............................................................. 24 1 1 12.00 12 7 5
......................................................................................................TGGAATGTAAATAAGTATGGA................................................................ 21 1 1 12.00 12 7 5
.....................................................................................................CTGGAATGTAAAGAAGTATGGAC............................................................... 23 2 1 12.00 12 0 12
.......................................................................................................TTAATGTAAAGAAGTATGGAG............................................................... 21 2 1 12.00 12 12 0
.......................................................................................................GGAATGTAAAGAAGTACGGAG............................................................... 21 1 1 12.00 12 12 0
.........................................................................................................AATGTAAAGAAGTATGGA................................................................ 18 0 1 12.00 12 12 0
...............................................................................................GATCGTATGGAATGTAAAGAAGTATGGAG............................................................... 29 3 1 12.00 12 12 0
......................................................................................................TGGAATGTAAAGAAGTATGA................................................................. 20 1 1 12.00 12 3 9
......................................................................................................TGGAATGTAAAGAAGTATGGAAT.............................................................. 23 2 1 12.00 12 4 8
......................................................................................................TGGAATGTAAGTAAGTATGGAG............................................................... 22 2 1 12.00 12 0 12
......................................................................................................TGGAATGTAAAGAAGTATGAA................................................................ 21 1 1 12.00 12 5 7
......................................................................................................TGTAATGTAAAGAAGTCTGGAG............................................................... 22 2 1 12.00 12 0 12
......................................................................................................TGGAATGTAAAGAAGTAGAG................................................................. 20 2 1 12.00 12 0 12
......................................................................................................TAGAATGTAAAGAAGTATGGA................................................................ 21 1 1 12.00 12 0 12
......................................................................................................TGAAATGTAAGGAAGTATGGAG............................................................... 22 2 1 12.00 12 3 9
....................................................................................................CTTGGAATGTAAAGAAGTATGGAG............................................................... 24 2 1 12.00 12 12 0
......................................................................................................TGGAATGTAAAGAAGTACGGAT............................................................... 22 2 1 12.00 12 0 12
....................................................................................................TATGGAATGTAAAGAAGTATGGAG............................................................... 24 0 1 12.00 12 12 0
......................................................................................................TGGAATGTAAAGAATTATGGA................................................................ 21 1 1 11.00 11 10 1
......................................................................................................TGCAATGTAAAGAAGCATGGAG............................................................... 22 2 1 11.00 11 0 11
.......................................................................................................GGAATCTAAAGAAGTATGGAG............................................................... 21 1 1 11.00 11 11 0
......................................................................................................TGGAATGTAAGGAAGTACGGAG............................................................... 22 2 1 11.00 11 0 11
......................................................................................................TGGAATGTAAAGAAGTATAGAGT.............................................................. 23 2 1 11.00 11 3 8
.......................................................................................................GGAATGTAAAGAACTATGGAG............................................................... 21 1 1 11.00 11 11 0
......................................................................................................TGGAATGTTAAGAAGTATGGAGA.............................................................. 23 2 1 11.00 11 0 11
.......................................................................................................GGAACGTAAAGAAGTATGGAG............................................................... 21 1 1 11.00 11 11 0
.......................................................................................................AGAATGTAAAGAAGTATGGAG............................................................... 21 1 1 11.00 11 11 0
......................................................................................................TGGAATGTAAAAAAGTATGGA................................................................ 21 1 1 10.00 10 1 9
..........................................................................................................ATGTAAAGAAGTATGGAGT.............................................................. 19 1 1 10.00 10 9 1
......................................................................................................TGGAATGTAAAGAAGTACGCAG............................................................... 22 2 1 10.00 10 0 10
........................................................................................................GAATGTAAAGAAGTATGG................................................................. 18 0 1 10.00 10 10 0
......................................................................................................TGGAATGTAAAGACGTATGGAGT.............................................................. 23 2 1 10.00 10 1 9
......................................................................................................TGGAATTTAAAGAAGTATGGAGA.............................................................. 23 2 1 10.00 10 3 7
......................................................................................................TGGAACGTAAAGAAGTATGGAGA.............................................................. 23 2 1 10.00 10 1 9
......................................................................................................TGGAATGTAAAGAAGTATGGAGGT............................................................. 24 2 1 10.00 10 10 0
.....................................................................................................CTGGAATGTAAAGAAGTCTGGAG............................................................... 23 2 1 10.00 10 0 10
.......................................................................................................GGAATATAAAGAAGTATGGAG............................................................... 21 1 1 10.00 10 9 1
.......................................................................................................GGAATGTAAAGAAGTGTGGAG............................................................... 21 1 1 10.00 10 10 0
......................................................................................................TGGAATGTAAAGAAGTATGGAGTTA............................................................ 25 2 1 10.00 10 8 2
......................................................................................................TGGAATGTAAAGAAGTATGTAGT.............................................................. 23 2 1 10.00 10 2 8
.......................................................................................................GGAATGCAAAGAAGTATGGAG............................................................... 21 1 1 10.00 10 9 1
...............................................................CCATGCTTCCTTGCATTCAATT...................................................................................................... 22 1 1 10.00 10 10 0
......................................................................................................TGGAATGTAAAGAAGTATGAAGT.............................................................. 23 2 1 10.00 10 1 9
......................................................................................................TGGAATGTAAAGAAGTATGCA................................................................ 21 1 1 9.00 9 1 8
......................................................................................................TGGAATGTAGAGAAGTATGGAGT.............................................................. 23 2 1 9.00 9 3 6
..............................................................ACCATGCTTCCTTGCATTCAATA...................................................................................................... 23 1 1 9.00 9 9 0
......................................................................................................TGGAATGTAAAGAAGTATGGAGTTG............................................................ 25 3 1 9.00 9 9 0
.......................................................................................................GGAATGTAAAGGAGTATGGAG............................................................... 21 1 1 9.00 9 9 0
......................................................................................................TGAAATGTAAAGAAGTATGGAGA.............................................................. 23 2 1 9.00 9 1 8
.........................................................................................................AATGTAAAGAAGTATGGAGT.............................................................. 20 1 1 9.00 9 8 1
......................................................................................................TGGAATGTAAAGAAGTATGCAGT.............................................................. 23 2 1 9.00 9 2 7
......................................................................................................TGGAATGAAAAGAAGTATGGA................................................................ 21 1 1 9.00 9 3 6
......................................................................................................TGGAATGTAAAGAAGTCTGGAGT.............................................................. 23 2 1 9.00 9 0 9
.....................................................................................................GTGGAATGTAAAGAAGTATGGA................................................................ 22 1 1 9.00 9 9 0
...............................................................CCATGCTTCCTTGCATTCAATAA..................................................................................................... 23 1 1 9.00 9 9 0
....................................................................................................AGTGGAATGTAAAGAAGTATGGAG............................................................... 24 2 1 9.00 9 9 0
.....................................................................................................CTGGAATGTAAAGAAGTATGGAA............................................................... 23 2 1 9.00 9 0 9
......................................................................................................TTGAATGTAAAGAAGTATGGAGA.............................................................. 23 2 1 8.00 8 4 4
.......................................................................................................GGAATGTAACGAAGTATGGAG............................................................... 21 1 1 8.00 8 8 0
......................................................................................................TGGAATATAAAGAAGTATGGAGA.............................................................. 23 2 1 8.00 8 0 8
......................................................................................................TGGAATGTAAGGAAGTATGGAGA.............................................................. 23 2 1 8.00 8 5 3
......................................................................................................TGGAATGTAACGAAGTATGGAGT.............................................................. 23 2 1 8.00 8 0 8
......................................................................................................TGGAATGTAAAGAAGTATGGAGATG............................................................ 25 3 1 8.00 8 8 0
......................................................................................................TGCAATGTAAAGAAGTATGGAGA.............................................................. 23 2 1 8.00 8 2 6
......................................................................................................TGGAATGTAAAGAAGTATGGCGT.............................................................. 23 2 1 8.00 8 0 8

Anti-sense strand reads

CTGGAATTTCAATTCTCACACCAAAAATACCAAAAATTTAACAAATGAACCGGAAACTCTCAAGGTACGAAGGAACGTAAGTTATCATATATTTATTCGTATACCTTACATTTCTTCATACCTCGCTTTAGACCGCTTTGTAGTATTTTTTTACTGTTGTATTTTTTATAATACACGCACGGCTGTT

************************************************..(((.......((((((((((((.((((((((.(((((..........)).))).)))))))).)))))))))))).......)))....************************************************ 		Read size # Mismatch Hit Count Total Norm Total

Re-alignment of all predicted orthologs

Species Coordinate ID Type Alignment
droGri2 scaffold_15126:6250366-6250552 + dgr-mir-1 Known_mirbase GACCTTA--AAGTTAAGAGTGTG----------------------GTTTTTA---------------------TGGT--------T--------------TTTAAATT-----G--TTTACTTGGCCT-TTGAGAGTTCCATGCTTCCTTGCATTCAATAGTATATAAA---TAAGCATATGGAATGTAAAGAAGTATGGAGCGAAATCTGGCGAAACATCATAAAAAA---------------------------ATGACAACATAAAA-AATATTATGTGCGTGCCGACAA-
droVir3 scaffold_12963:13613401-13613570 - dvi-mir-1 Known_mirbase GATATTA--AAGTTAAGAGTGTGTGA-------------------GTTGTAA---------------------TGGT--------T--------------TTTAAATT-----GTGCTTACTTGGCCT-TTGAGAGTTCCATGCTTCCTTACATTCAATAGTATTCAAA---TAAGCATATGGAATGTAAAGAAGTATGGAGCGAAATCTGGCGAAACATCACAAAA-------------------ACAA-------CAATAACATTA-------------------------A
droMoj3 scaffold_6500:24555135-24555311 + dmo-mir-1 Known_mirbase AACATTA--AAGCCAAGAGTGTATGGCC----CACA--------------AA---------------------TGGG--------T--------------CTTAAATT-----G--TTCATTGCGCCT-TTGAGAGTTCCATGCTTCCTTGCATTCAATAGTATTTATA---TAAGCATATGGAATGTAAAGAAGTATGGAGCGAAATCTGGCGAAGCATCATACCAAA---------------------------CTGTAAAAAA-AAA-CACATTATG--------------
droWil2 scf2_1100000004521:1845891-1846057 + dwi-mir-1 Known_mirbase GAATTACATTATCCAAAT--ATATAG----------------------------------A------------TGG--T-A-G-ATAT-----A--TAT---G-----------TAGCTACTTGGCCTCTTGAGAGTTCCATGCTTCCTTGCATTCAATAGTATAT--TAAATAAGCATATGGAATGTAAAGAAGTATGGAGCGAAATCTGGTCCGACATCATCTAC-A---------------------------ATATAATCTC-AAA-G---------------------A
dp5 4_group3:7845316-7845481 - dps-mir-1 Known_mirbase GCCATTC--AGATAAAGTGAGTGAGTCCCCACCCAGGAGGGGGCT--AATAAAAGTCAAAA------------------------------------------GAGG-------AAATCAGAAGGCCT-TTGAGAGTTCCATGCTTCCTTGCATTCAATAGTATAACAT---AAAGCATATGGAATGTAAAGAAGTATGGAGCGAAATCTGGCAAGACAGCGT-----------------------------------------------------------------------
droPer2 scaffold_1:9292017-9292159 - dpe-mir-1 Known_mirbase GAGTCCC--CACCCAGGAGAGGG----------------------CTAATAAAAGTCA----------------------------------------A---AGACG-------GAATCAGAAGGCCT-TTGAGAGTTCCATGCTTCCTTGCATTCAATAGTATAACAT---AAAGCATATGGAATGTAAAGAAGTATGGAGCGAAATCTGGCAAGACATC-------------------------------------------------------------------------
droAna3 scaffold_12916:6985771-6985962 + dan-mir-1 Known_mirbase AAGTTTA--GAATTAATGGTAAAGTTTT----CCAAAAAGTGA-----CGA---------------------------------------------------AAAAAT-----A--TCAAGAGAGCCT-TTGAGAGTTCCATGCTTCCTTGCATTCAATAGTATAATAT---CAAGCATATGGAATGTAAAGAAGTATGGAGCGAAATCTGGCAAGACTTCAAGTTT-AAATTTCAAAAAAT--GG----TAAGTT----TTAAGAAAAA-AATATT-----------------
droBip1 scf7180000396566:165956-166139 + AAGTTTA--CACATAAAGGTGTAGTGCC-------------------CCAAACAGT--------------------------------------------GAAAAAAT-----A--TCAATAGAGCCT-TTGAGAGTTCCATGCTTCCTTGCATTCAATAGTATAATAT---CAAGCATATGGAATGTAAAGAAGTATGGAGCGAAATCTGGCAAGACATCGAGTTT-ACAT-TCAAAAAATAAGG----TATGTT---------TAAAA-AATAT------------------
droKik1 scf7180000302408:678926-679093 + GACAATG--TGTCCAAGTGAGTG----------------------CCACTAAAAGTTAGCTG-GC------A---G-CGGAAAA-----T--AAACCAGTG--AA---ATAACC--CATTCGGGGCCT-TTGAGAGTTCCATGCTTCCTTGCATTCAATAGTAAATATT---CAAGCATATGGAATGTAAAGAAGTATGGAGCGAAATCTGGCCAGACATC-------------------------------------------------------------------------
droFic1 scf7180000448593:10031-10180 + AA---------------------------------------------------AGTTGAACGGGT------C---GCTGGAAAA-----T--AAAACAA---AGAA--A-------CGTAATCAGCCT-TTGAGAGTTCCATGCTTCCTTGCATTCAATAGTATATATT---CAAGCATATGGAATGTAAAGAAGTATGGAGCGAAATCTGGCAACTCATCGAATAAAA---------------------------GTGA----------------------------------
droEle1 scf7180000491186:467182-467350 + GCC--------------------------------------------ACTAAAAGTTAACCGGGG------G---G-TGAAAAA-----AGGAAACG------AA-----ATAA--CATAATCAGCCT-TTGAGAGTTCCATGCTTCCTTGCATTCAATAGTATATATT---CAAGCATATGGAATGTAAAGAAGTATGGAGCGAAATCTGGCCTGACATCGAAGTAGA---------------------------GTGAAAACAT-AAAGA---------------------A
droRho1 scf7180000773642:753-872 - -------------------------------------------------------------------------------------------------------------------------TCAGCCT-TTGAGAGTTCCATGCTTCCTTGCATTCAATAGTATATATT---CAAGCATATGGAATGTAAAGAAGTATGGAGCGAAATCTGGCCAGACATCGCAGCTAA---------------------------GTGTAAAATA-AGA-AAT--------------------
droBia1 scf7180000302422:7601771-7601911 - GAGCC------------------------------------------ACCAAAAGTTAACCCG-C-------------G-A-G-ATAT-----AAACAG---GGA---G-------CAGAATCGGCCT-GTGAGAGTTCCATGCTTCCTTGCATTCAATAGTATCTATT---CAAGCCTATGGAATGTAAAGAAGTATGGAGCGAAATCTGGCCTTACATCA------------------------------------------------------------------------
droTak1 scf7180000415115:70140-70328 - GACTGT------CCAAGTGAGTG----------------------CCACTAAAAGTTAACCGG-CGGAGAATTTGG-TGGA-G-AAATACACAAAACAA---GAA---A-------CATAATCAGCCT-TTGAGAGTTCCATGCTTCCTTGCATTCAATAGTATCTATT---CAAGCATATGGAATGTAAAGAAGTATGGAGCGAAATCTGGCCAAACATCGAAGAT----------------------------------A--TC-AAA-AATG------------------A
droEug1 scf7180000409767:814618-814785 - GCG-----------------------------------------------------------GGT------G---A-AGGAAAAAAATATGAAAAACAA---AGA---A-------CTTTATCAGCCT-TTGAGAGTTCCATGCTTCCTTGCATTCAATAGTATATAGA---AAAGCATATGGAATGTAAAGAAGTATGGAGCGAAATCTGGCAAGACATCGAAGTTGAAA---------------ATAT-------ATATAACATAAAA-GTGATT-----------------
dm3 chr2L:20487390-20487536 + dme-mir-1 Known_mirbase CAC----------------------------------------------CAAAAGTTAGCCGCGT------T---G-TGGAAAA-----TCCAAAACAA---AGA---CCATCC--CATATTCAGCCT-TTGAGAGTTCCATGCTTCCTTGCATTCAATAGT-TATATT---CAAGCATATGGAATGTAAAGAAGTATGGAGCGAAATCTGGCGAGACATC-------------------------------------------------------------------------
droSim2 2l:19943996-19944142 + dsi-mir-1 Known_mirbase CAC----------------------------------------------CAAAAGTTAGCCGCGT------T---G-TGGAAAA-----TCCAAAACAA---AGA---CCATCC--CATCTTCAGCCT-TTGAGAGTTCCATGCTTCCTTGCATTCAATAGT-TATACT---CAAGCATATGGAATGTAAAGAAGTATGGAGCGAAATCTGGCGAGACATC-------------------------------------------------------------------------
droSec2 scaffold_18:365615-365761 + dse-mir-1 Known_mirbase CAC----------------------------------------------CAAAAGTTAGCCGCGT------T---G-TGGAAAA-----TCCAAAACAA---GGA---CCATCC--CATCTTCAGCCT-TTGAGAGTTCCATGCTTCCTTGCATTCAATAGT-TATACT---CAAGCATATGGAATGTAAAGAAGTATGGAGCGAAATCTGGCGAGACATC-------------------------------------------------------------------------
droYak3 2R:6842698-6842848 + dya-mir-1 Known_mirbase AAATC--------------------------------------------------------------------------------------CAAAACAA---AGA---ACATCC--CACCATCAGCCT-TTGAGAGTTCCATGCTTCCTTGCATTCAATAGTATATACT---CAAGCATATGGAATGTAAAGAAGTATGGAGCGAAATCTGGCGAGTCATCGGAGTTGA---------------------------AAGTAAAAGA-AAAGAGCATT-----------------
droEre2 scaffold_4845:3954252-3954386 - der-mir-1 Known_mirbase AACCT----------------------------------------------------AGCCG-------------------------------AAACAA---GGA---C-------C---TCCAGCCT-GTGAGAGTTCCATGCTTCCTTGCATTCAATAGT-TATACT---CAAGCATATGGAATGTAAAGAAGTATGGAGCGAAATCTGGCGAGACATCGGAAAA-------------------TTAAA-----ATGTAAA-------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droGri2
GACCTTA--AAGTTAAGAGTGTG----------------------GTTTTTA---------------------TGGT--------T--------------TTTAAATT-----G--TTTACTTGGCCT-TTGAGAGTTCCATGCTTCCTTGCATTCAATAGTATATAAA---TAAGCATATGGAATGTAAAGAAGTATGGAGCGAAATCTGGCGAAACATCATAAAAAA---------------------------ATGACAACATAAAA-AATATTATGTGCGTGCCGACAA-SizeHit CountTotal NormTotalM041

Female-body		V109

Male-body
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGGAG............................................................................................2211015272.001015272645154370118
.....................................................................................................................................................................................GGAATGTAAAGAAGTATGGAG............................................................................................21172469.007246972314155
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGGA.............................................................................................21142096.00420962451617580
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGGAGT...........................................................................................23118497.0018497800910488
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGGAGA...........................................................................................2315980.00598030492931
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGG..............................................................................................2013777.00377718481929
.....................................................................................................................................................................................GGAATGTAAAGAAGTATGGA.............................................................................................2012789.00278927845
......................................................................................................................................................................................GAATGTAAAGAAGTATGGAG............................................................................................2012129.002129208346
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGGAC............................................................................................2211437.001437597840
..........................................................................................................................................CCATGCTTCCTTGCATTCAATA......................................................................................................................................2211381.00138113765
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGGAT............................................................................................2211049.001049384665
.....................................................................................................................................................................................GGAATGTAAAGAAGTATGGAGT...........................................................................................221955.0095594510
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGGAA............................................................................................221909.00909409500
....................................................................................................................................................................................TGGAATGTAAAGAAGTATG...............................................................................................191737.00737615122
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGGAGTT..........................................................................................241547.00547223324
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGGAGC...........................................................................................231470.00470289181
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGGAGG...........................................................................................231435.0043537857
.....................................................................................................................................................................................GGAATGTAAAGAAGTATGGAGA...........................................................................................221347.003473452
...................................................................................................................................................................................ATGGAATGTAAAGAAGTATGGAG............................................................................................231346.003463415
..........................................................................................................................................CCATGCTTCCTTGCATTCAAT.......................................................................................................................................211332.003323293
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGAG.............................................................................................211302.0030226276
........................................................................................................................................................................................ATGTAAAGAAGTATGGAG............................................................................................181222.0022217448
.....................................................................................................................................................................................GGAATGTAAAGAAGTATGG..............................................................................................191192.001921911
.......................................................................................................................................................................................AATGTAAAGAAGTATGGAG............................................................................................191180.001801728
...........................................................................................................................................CATGCTTCCTTGCATTCAATA......................................................................................................................................211165.001651650
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGGAGAA..........................................................................................241103.001034360
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGGAGTA..........................................................................................241101.001017922
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGGAGTTT.........................................................................................25193.00932865
....................................................................................................................................................................................TGGAATGTAAAGAAGTAT................................................................................................18183.0083794
......................................................................................................................................................................................GAATGTAAAGAAGTATGGA.............................................................................................19181.0081774
.....................................................................................................................................................................................GGAATGTAAAGAAGTATG...............................................................................................18180.0080791
..........................................................................................................................................CCATGCTTCCTTGCATTCA.........................................................................................................................................19157.0057570
.....................................................................................................................................................................................GGAATGTAAAGAAGTATGGAA............................................................................................21157.0057561
..........................................................................................................................................CCATGCTTCCTTGCATTCAA........................................................................................................................................20156.0056560
.....................................................................................................................................................................................GGAATGTAAAGAAGTATGGAC............................................................................................21154.0054540
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGGAAA...........................................................................................23152.00522329
.....................................................................................................................................................................................GGAATGTAAAGAAGTATGGAGG...........................................................................................22150.0050500
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGGAGAT..........................................................................................24148.00482325
.....................................................................................................................................................................................GGAATGTAAAGAAGTATGGAT............................................................................................21142.0042411
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGGC.............................................................................................21136.00361224
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGGAGGC..........................................................................................24136.0036360
...........................................................................................................................................CATGCTTCCTTGCATTCAAT.......................................................................................................................................20135.0035350
......................................................................................................................................................................................GAATGTAAAGAAGTATGGAGT...........................................................................................21133.0033303
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGGG.............................................................................................21131.00311417
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGGAGTC..........................................................................................24126.0026224
.....................................................................................................................................................................................GGAATGTAAAGAAGTATGGAGC...........................................................................................22125.0025250
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGGACT...........................................................................................23124.0024717
......................................................................................................................................................................................GAATGTAAAGAAGTATGGAGA...........................................................................................21123.0023194
............................................................................................................................................ATGCTTCCTTGCATTCAATA......................................................................................................................................20123.0023230
.....................................................................................................................................................................................GGAATGTAAAGAAGTATGGAGTT..........................................................................................23120.0020191
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGGATT...........................................................................................23120.0020713
...................................................................................................................................................................................ATGGAATGTAAAGAAGTATGGA.............................................................................................22119.0019154
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGGT.............................................................................................21119.0019613
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGGTT............................................................................................22117.0017116
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGGAGCA..........................................................................................24116.0016160
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGGAGAC..........................................................................................24114.0014140
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGGACA...........................................................................................23114.001468
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGGAGCT..........................................................................................24112.001275
.......................................................................................................................................................................................AATGTAAAGAAGTATGGA.............................................................................................18112.0012120
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGA..............................................................................................20112.001239
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGGAAT...........................................................................................23112.001248
..................................................................................................................................................................................TATGGAATGTAAAGAAGTATGGAG............................................................................................24112.0012120
........................................................................................................................................................................................ATGTAAAGAAGTATGGAGT...........................................................................................19110.001091
......................................................................................................................................................................................GAATGTAAAGAAGTATGG..............................................................................................18110.0010100
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGGAGGT..........................................................................................24110.0010100
..........................................................................................................................................CCATGCTTCCTTGCATTCAATT......................................................................................................................................22110.0010100
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGGAGTTG.........................................................................................2519.00990
.......................................................................................................................................................................................AATGTAAAGAAGTATGGAGT...........................................................................................2019.00981
..........................................................................................................................................CCATGCTTCCTTGCATTCAATAA.....................................................................................................................................2319.00990
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGGAGATG.........................................................................................2518.00880
droVir3
GATATTA--AAGTTAAGAGTGTGTGA-------------------GTTGTAA---------------------TGGT--------T--------------TTTAAATT-----GTGCTTACTTGGCCT-TTGAGAGTTCCATGCTTCCTTACATTCAATAGTATTCAAA---TAAGCATATGGAATGTAAAGAAGTATGGAGCGAAATCTGGCGAAACATCACAAAA-------------------ACAA-------CAATAACATTA-------------------------ASizeHit CountTotal NormTotalM027

Male-body		M028

Head		M047

Female-body		M061

Embryo		SRR060654

Ovary		SRR060655

Testis		SRR060656

Ovary		SRR060657

Testis		SRR060658

Ovary		SRR060659

Testis		SRR060660

Ovary		SRR060661

Embryo		SRR060662

Embryo		SRR060663

Embryo		SRR060664

Male-body		SRR060665

Female-body		SRR060666

Male-body		SRR060667

Female-body		SRR060668

Male-body		SRR060669

Female-body		SRR060670

Testis		SRR060671

Male-body		SRR060672

Female-body		SRR060673

Ovary		SRR060674

Ovary		SRR060675

Ovary		SRR060676

Ovary		SRR060677

Ovary		SRR060678

Testis		SRR060679

Testis		SRR060680

Testis		SRR060681

Testis		SRR060682

Embryo		SRR060683

Testis		SRR060684

Embryo		SRR060685

Embryo		SRR060686

Embryo		SRR060687

Embryo		SRR060688

Ovary		SRR060689

Testis		SRR1106712

embryo_0-2h		SRR1106713

embryo_0-2h		SRR1106714

embryo_2-4h		SRR1106715

embryo_4-6h		SRR1106716

embryo_4-6h		SRR1106717

embryo_6-8h		SRR1106718

embryo_6-8h		SRR1106719

embryo_8-10h		SRR1106720

embryo_8-10h		SRR1106721

embryo_10-12h		SRR1106722

embryo_10-12h		SRR1106723

embryo_12-14h		SRR1106724

embryo_12-14h		SRR1106725

embryo_14-16h		SRR1106726

embryo_14-16h		SRR1106727

larvae		SRR1106728

larvae		SRR1106729

mixed whole adult body		SRR1106730

embryo_16-30h		V047

Embryo		V053

Head		V116

Male-body		GSM1528803

follicle cells		SRR2096013

Ovary_Strain_9_oxidized		SRR2096014

Ovary_Strain_160_oxidized		SRR2096026

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096038

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096050

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096055

Ovary_Min_43		SRR2096056

Ovary_Min_46		SRR2096057

Ovary_Min_50		SRR2096058

Ovary_Min_98		SRR2096059

Ovary_Min_164		SRR2096060

Ovary_Min_193		SRR2096061

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096072

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096079

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096080

embryo_0-2h from 15to16 day old nondysgenic mothers		SRR2096081

embryo_0-2h from 15to16 day old nondysgenic mothers
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGGAG............................................................................................2214790478.0047904781151381101385431853685211856375505511944467208166010810252560822939810848937146619862914174312155150111259490389540584449855256793735442513146354044252111301112132952181104154631223252418134114111225198408481292449347912672153527251543043252947443520200214738407871483112321151379208719836073128603
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGGA.............................................................................................211347794.0034779435959811716313143952513545793809604000337031764991372304519905116369321427120890482416435903596516653341579411527835461175117625223341281020916136254323199840201384433409913657664122702020542548706932
.....................................................................................................................................................................................GGAATGTAAAGAAGTATGGAG............................................................................................211125188.001251882012204916311326635110105031931093982891608184285256463951144905000014000000000000000000010421737800100100100002312
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGGAGT...........................................................................................231113985.0011398512130091632735259889438923532860011457557402589104784986513630538748005899614824813712481191532131513532017325252497617121728649512791112862772074446408723300250211592532423600302038388346324375
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGGAGA...........................................................................................23166931.0066931301425036327149152878473077000601627611181437619872352811885378519494579474355091734670112120111195010101352312155811121066523112457206292981814110000005161183157205
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGG..............................................................................................20148394.004839400180242648635297585143104110700014285401251047627980104917948498661811968248491025020002133700000000011330174303639376417649013481189000000111797163159
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGGAA............................................................................................22117196.00171960038964515532275282092600015096994351077669502465951049132315421823929274218042000044001000000000001011123998804141010311100000021391928
.....................................................................................................................................................................................GGAATGTAAAGAAGTATGGA.............................................................................................20110473.001047300102260030200100036211430281631121010029607010001120000000000000000000081900001000000000111
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGGAT............................................................................................2218847.008847004661652445220749000326795520813275658913983775464416331190000060000000000000201224869509540400000200000008326
....................................................................................................................................................................................TGGAATGTAAAGAAGTATG...............................................................................................1916532.00653200128432381272918528000635372200472313241431792692814612117610125690560000475000000000010000115144281314243127000000014396
......................................................................................................................................................................................GAATGTAAAGAAGTATGGAG............................................................................................2015466.005466443041831241456423400018264531287947125288201717298260130010213000000000000000200053101125002000610947300000
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGGAC............................................................................................2214480.0044802112551317272285248000297104351088742256122514342108817080000070010001002120103443136546104200210200000012171
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGGAGTT..........................................................................................2413762.00376200324575914021851500052317695350146256912435613713114947215401000112190113223247111431115221521421957644021020000000017235
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGGAGC...........................................................................................2313143.0031430041727517343523100003791706128310715578926400343244782506000108000100210114231422913120932902001100000014301
....................................................................................................................................................................................TGGAATGTAAAGAAGTA.................................................................................................1712264.002264000000000000000000000000000000000000000048101533826306051130846576458281676557010000679000000557423858
....................................................................................................................................................................................TGGAATGTAAAGAAGTAT................................................................................................1811995.00199500176007562000013492071342971621541112917824321301917251160010090000000000000001010029900211000000001020
.....................................................................................................................................................................................GGAATGTAAAGAAGTATGG..............................................................................................1911989.00198900197100000000000000000002000000011000000000000000000000000000031100000000000000000
.....................................................................................................................................................................................GGAATGTAAAGAAGTATGGAGA...........................................................................................2211619.00161900157200000000000521313039000000010000000000000000000000000000011700000000000000010
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGGAGTTT.........................................................................................2511592.001592001249220411730002367435160811433751600313285818020000130201022026410594178203131226400000000200000212
........................................................................................................................................................................................ATGTAAAGAAGTATGGAG............................................................................................1811578.00157832185234142869100015391101152779586167223125114503000001000000000000000130012236800000062205301000
.....................................................................................................................................................................................GGAATGTAAAGAAGTATGGAGT...........................................................................................2211543.00154300140830002210000228101616111812000001304000000000000000000000000000041100000000000000000
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGGAGAA..........................................................................................2411528.001528103018320308000018496331044898042128001217831001000000000000001010000213004935900000000000005546
..........................................................................................................................................CCATGCTTCCTTACATTCAATA......................................................................................................................................2211421.00142123424310100110000001344940429130416085032566225123083511131009000631354319271688920516119063110111105321100
.......................................................................................................................................................................................AATGTAAAGAAGTATGGAG............................................................................................1911226.001226383846733903541000966070854331142848310218275905000005000000000000000220020243800010084415401000
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGGAAA...........................................................................................2311102.00110200239003011112000884219692642332710002023280802000006000000000000000000103334600000000000000031
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGGAGTA..........................................................................................241959.0095900184620611810009740216732440375500012644300000003000000000010000112022030200000100000000013
..........................................................................................................................................CCATGCTTCCTTACATTCAAT.......................................................................................................................................211918.00918411273300100000001173629569632318778122132013625020511200000003100312120000202001510000000001000
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGAG.............................................................................................211883.0088300764020858300039221145162702019001114525010000010000000000000000100284648200000000000000000
...................................................................................................................................................................................ATGGAATGTAAAGAAGTATGGAG............................................................................................231822.0082200688201001300002112783110227000000203020000000000000000110000000761300000000000001000
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGGT.............................................................................................211689.006890080337218619200025497922410816010215813000000030000000000000000000210326801000000000001000
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGGAGG...........................................................................................231516.0051601325100202181000852411131000121042302000002000000001000000004112197200000000000002210
.....................................................................................................................................................................................GGAATGTAAAGAAGTATGGAA............................................................................................211437.00437004290000000000010001200100000001000000000000000000000000000001100000000000000000
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGGAGAT..........................................................................................241410.0041000830020206000034167191015191801011560300010000000000000001100001121214900000000000000012
......................................................................................................................................................................................GAATGTAAAGAAGTATGGA.............................................................................................191402.00402203281100101000085664202900000061103000002000000000000000010004700000000100000000
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGGC.............................................................................................211393.00393001920454013000214251513115221522001310204000014000000000000000000021463800000000000000000
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGGG.............................................................................................211287.002872258520241309100091623543282000012350100000000000000000002000420313900000000000000000
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGGATT...........................................................................................231259.00259001200000062000232018453240000012100300000000000000000000000122815600000000010000100
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGGCT............................................................................................221256.00256001001020100000203102300000000000010000000000000000000000000281811200000000000000000
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGGATA...........................................................................................231198.001980014000000100003123120250000000020100000100000000000000000004415200000000000000000
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGT..............................................................................................201153.001530018101000100001203121321000022000000000000000000000000000002721820000000000000000
.....................................................................................................................................................................................GGAATGTAAAGAAGTATG...............................................................................................181151.00151001490000000000000000000000000000000000000000000000000000000001100000000000000000
......................................................................................................................................................................................GAATGTAAAGAAGTATGGAGT...........................................................................................211143.0014310602010101000011216101147000002122020000010000000000000000010151600000000000000100
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGGCC............................................................................................221133.00133000000000000001100014310000000000000000000000000000000000000380300000000000000000
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGA..............................................................................................201130.001300029202001100007514310200000002010000000100000000000000000201164900000000000000000
......................................................................................................................................................................................GAATGTAAAGAAGTATGGAGA...........................................................................................211109.00109006510001000000531201043000000001000000000000000000000000000071500000000000000000
......................................................................................................................................................................................GAATGTAAAGAAGTATGGAGTT..........................................................................................221106.0010600101100007000016558430516001003104000000000000000000000001000001500000000000000000
....................................................................................................................................................................................TGGAATGTAAAGAAGTATT...............................................................................................191106.00106002700601170000631422215011102112000000100000000000000000010062100000000000000000
..........................................................................................................................................CCATGCTTCCTTACATTCAA........................................................................................................................................201103.00103101510000000000122221160191100001454400000000000000000010000000000000200000000000000
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGGAAT...........................................................................................231101.0010100710000220000610545012000002213000000010000010000100000001134800000000000000100
.......................................................................................................................................................................................AATGTAAAGAAGTATGGA.............................................................................................181101.001010037002020200001105933041000000140003000002000000000000000000003000000000000000000
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGGAGTAT.........................................................................................25197.00970026000000200007448104012000000011000000000000000000000000000012600000000000000000
...................................................................................................................................................................................ATGGAATGTAAAGAAGTATGGA.............................................................................................22191.009100451000000000054341003510010100100000000000000000000000000115900000000000000000
droMoj3
AACATTA--AAGCCAAGAGTGTATGGCC----CACA--------------AA---------------------TGGG--------T--------------CTTAAATT-----G--TTCATTGCGCCT-TTGAGAGTTCCATGCTTCCTTGCATTCAATAGTATTTATA---TAAGCATATGGAATGTAAAGAAGTATGGAGCGAAATCTGGCGAAGCATCATACCAAA---------------------------CTGTAAAAAA-AAA-CACATTATG--------------SizeHit CountTotal NormTotalM046

Female-body		V041

Embryo		V049

Head		V056

Head		M060

Embryo		V110

Male-body
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGGAG............................................................................................2213195614.003195614174696725355552587139201205106798198
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGGA.............................................................................................211247608.0024760818066337431789100489649397
.....................................................................................................................................................................................GGAATGTAAAGAAGTATGGAG............................................................................................211197023.001970231961151763180144477
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGGAGT...........................................................................................23176793.007679325860272873021241316832183
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGG..............................................................................................20135553.003555321219303761121146711340
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGGAGA...........................................................................................23135444.0035444171285473481122236813931
.....................................................................................................................................................................................GGAATGTAAAGAAGTATGGA.............................................................................................20119795.001979519750023733
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGGAC............................................................................................2219758.009758567140481858266552
......................................................................................................................................................................................GAATGTAAAGAAGTATGGAG............................................................................................2016719.0067196204691336108289
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGGAA............................................................................................2216510.0065103810811123251572025
....................................................................................................................................................................................TGGAATGTAAAGAAGTATG...............................................................................................1914908.0049082980270194531609
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGGAGC...........................................................................................2313648.003648462291231022494276
.....................................................................................................................................................................................GGAATGTAAAGAAGTATGGAGT...........................................................................................2213001.003001281561754118
.....................................................................................................................................................................................GGAATGTAAAGAAGTATGG..............................................................................................1912175.0021752162001012
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGGAT............................................................................................2212120.002120791179144159100747
.....................................................................................................................................................................................GGAATGTAAAGAAGTATGGAGA...........................................................................................2211995.0019951977000513
..........................................................................................................................................CCATGCTTCCTTGCATTCAATA......................................................................................................................................2211535.001535501141110171
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGGAGTT..........................................................................................2411203.00120328354526402433
...................................................................................................................................................................................ATGGAATGTAAAGAAGTATGGAG............................................................................................231809.00809773754137
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGGAGG...........................................................................................231788.007886658156841
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGAG.............................................................................................211758.007581651472344505
......................................................................................................................................................................................GAATGTAAAGAAGTATGGA.............................................................................................191605.00605569001134
.......................................................................................................................................................................................AATGTAAAGAAGTATGGAG............................................................................................191591.005915077261950
........................................................................................................................................................................................ATGTAAAGAAGTATGGAG............................................................................................181591.0059143092730113
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGGG.............................................................................................211575.00575783101443139
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGGAGAA..........................................................................................241538.005383050122018183
.....................................................................................................................................................................................GGAATGTAAAGAAGTATGGAA............................................................................................211405.0040540500000
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGGAAA...........................................................................................231305.0030516705151117
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGGAGTA..........................................................................................241300.00300101211315168
.....................................................................................................................................................................................GGAATGTAAAGAAGTATG...............................................................................................181296.0029629500001
..........................................................................................................................................CCATGCTTCCTTGCATTCAAT.......................................................................................................................................211266.002661135001480
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGGT.............................................................................................211265.0026563273221140
....................................................................................................................................................................................TGGAATGTAAAGAAGTAT................................................................................................181260.002602100825413
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGGAGTTT.........................................................................................251195.001955623617111
......................................................................................................................................................................................GAATGTAAAGAAGTATGGAGT...........................................................................................211155.001551021012130
......................................................................................................................................................................................GAATGTAAAGAAGTATGGAGA...........................................................................................211136.0013667322656
...................................................................................................................................................................................ATGGAATGTAAAGAAGTATGGA.............................................................................................221105.001059200247
...........................................................................................................................................CATGCTTCCTTGCATTCAATA......................................................................................................................................21198.009844200520
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGGAGAT..........................................................................................24194.0094431231035
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGGC.............................................................................................21185.008544091967
......................................................................................................................................................................................GAATGTAAAGAAGTATGG..............................................................................................18182.00827500016
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGA..............................................................................................20178.0078330081819
.....................................................................................................................................................................................GGAATGTAAAGAAGTATGGAT............................................................................................21176.00767500001
.....................................................................................................................................................................................GGAATGTAAAGAAGTATGGAGC...........................................................................................22170.007053000161
.....................................................................................................................................................................................GGAATGTAAAGAAGTATGGAGG...........................................................................................22169.00696900000
....................................................................................................................................................................................TGGAATGTAAAGAAGTATC...............................................................................................19167.00673000640
......................................................................................................................................................................................GAATGTAAAGAAGTATGGAGTT..........................................................................................22166.00668000850
.......................................................................................................................................................................................AATGTAAAGAAGTATGGA.............................................................................................18164.00645600215
droWil2
GAATTACATTATCCAAAT--ATATAG----------------------------------A------------TGG--T-A-G-ATAT-----A--TAT---G-----------TAGCTACTTGGCCTCTTGAGAGTTCCATGCTTCCTTGCATTCAATAGTATAT--TAAATAAGCATATGGAATGTAAAGAAGTATGGAGCGAAATCTGGTCCGACATCATCTAC-A---------------------------ATATAATCTC-AAA-G---------------------ASizeHit CountTotal NormTotalM020

Head		M045

Female-body		V117

Male-body		V118

Embryo		V119

Head
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGGAG............................................................................................2213227179.0032271793285977923853151316126927618
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGGA.............................................................................................211153590.001535902190066400861033113086
.....................................................................................................................................................................................GGAATGTAAAGAAGTATGGAG............................................................................................21171727.0071727169819169854884
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGGAGT...........................................................................................23150379.00503797121721885294189930
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGG..............................................................................................20135884.0035884120699935913744451
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGGAGA...........................................................................................23121234.002123438155794323302803
.....................................................................................................................................................................................GGAATGTAAAGAAGTATGGA.............................................................................................2019845.009845098082584
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGGAA............................................................................................2217528.0075280271817815642465
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGGAC............................................................................................2217329.007329171195109513063716
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGGAT............................................................................................2213816.00381613982322437748
......................................................................................................................................................................................GAATGTAAAGAAGTATGGAG............................................................................................2013748.003748169256872312627
....................................................................................................................................................................................TGGAATGTAAAGAAGTATG...............................................................................................1912544.00254401400772122250
.....................................................................................................................................................................................GGAATGTAAAGAAGTATGG..............................................................................................1912487.00248702476704
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGGAGC...........................................................................................2311853.0018530194155705799
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGAG.............................................................................................2111796.0017960359254756427
.....................................................................................................................................................................................GGAATGTAAAGAAGTATGGAGT...........................................................................................2211530.00153001432293237
.......................................................................................................................................................................................AATGTAAAGAAGTATGGAG............................................................................................191988.009889537127121374
.....................................................................................................................................................................................GGAATGTAAAGAAGTATGGAGA...........................................................................................221980.009800976301
........................................................................................................................................................................................ATGTAAAGAAGTATGGAG............................................................................................181860.008605540960126210
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGGAGTT..........................................................................................241511.00511016716943132
......................................................................................................................................................................................GAATGTAAAGAAGTATGGA.............................................................................................191440.0044034109711
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGGAGG...........................................................................................231391.003911294373227
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGGT.............................................................................................211357.003570104164584
...................................................................................................................................................................................ATGGAATGTAAAGAAGTATGGAG............................................................................................231339.00339023696232
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGGAGAA..........................................................................................241337.0033701801241122
.....................................................................................................................................................................................GGAATGTAAAGAAGTATGGAA............................................................................................211307.003070302005
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGGAAA...........................................................................................231293.00293017488427
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGGAGTA..........................................................................................241207.00207096641334
.....................................................................................................................................................................................GGAATGTAAAGAAGTATG...............................................................................................181160.001600160000
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGGG.............................................................................................211159.00159257343531
..........................................................................................................................................CCATGCTTCCTTGCATTCAATA......................................................................................................................................221147.0014721230184
....................................................................................................................................................................................TGGAATGTAAAGAAGTAT................................................................................................181144.001440129564
...................................................................................................................................................................................ATGGAATGTAAAGAAGTATGGA.............................................................................................221143.00143270203516
.....................................................................................................................................................................................GGAATGTAAAGAAGTATGGAC............................................................................................211130.001300127021
......................................................................................................................................................................................GAATGTAAAGAAGTATGGAGT...........................................................................................211124.00124583131310
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGA..............................................................................................201119.0011908127110
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGGC.............................................................................................211113.0011303442928
................................................................................................................................................................GTATAT--TAAATAAGCATA..................................................................................................................181107.001070001052
......................................................................................................................................................................................GAATGTAAAGAAGTATGG..............................................................................................18186.0086083111
......................................................................................................................................................................................GAATGTAAAGAAGTATGGAGA...........................................................................................21186.008605751014
.......................................................................................................................................................................................AATGTAAAGAAGTATGGA.............................................................................................18168.0068256226
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGGAGTTT.........................................................................................25161.006102623210
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGGACT...........................................................................................23160.006012124410
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGT..............................................................................................20157.00570371343
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGGACA...........................................................................................23153.005302412017
.....................................................................................................................................................................................GGAATGTAAAGAAGTATGAG.............................................................................................20150.0050050000
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGGAAT...........................................................................................23149.00490811624
...................................................................................................................................................................................ATGGAATGTAAAGAAGTATGG..............................................................................................21145.00450231228
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGGAGAT..........................................................................................24144.004401912310
.....................................................................................................................................................................................GGAATGTAAAGAAGTATGGAGG...........................................................................................22143.0043043000
.....................................................................................................................................................................................GGAATGTAAAGAAGTATGGAT............................................................................................21143.0043039130
..................................................................................................................................................................................TATGGAATGTAAAGAAGTATGGAG............................................................................................24129.00291111124
....................................................................................................................................................................................TGGAATGTAAAGAAGTAG................................................................................................18128.0028013582
.......................................................................................................................................................................................AATGTAAAGAAGTATGGAGT...........................................................................................20127.0027212526
......................................................................................................................................................................................GAATGTAAAGAAGTATGGAGTT..........................................................................................22127.00270412011
.....................................................................................................................................................................................GGAATGTAAAGAAGTATGGAGAA..........................................................................................23126.0026026000
.....................................................................................................................................................................................GGAATGTAAAGAAGTATGGAGTT..........................................................................................23125.0025025000
.....................................................................................................................................................................................GGAATGTAAAGAAGTATGGAGC...........................................................................................22124.0024117123
..........................................................................................................................................CCATGCTTCCTTGCATTCAAT.......................................................................................................................................21124.0024019050
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGGATT...........................................................................................23123.002308762
........................................................................................................................................................................................ATGTAAAGAAGTATGGAGT...........................................................................................19123.0023214106
dp5
GCCATTC--AGATAAAGTGAGTGAGTCCCCACCCAGGAGGGGGCT--AATAAAAGTCAAAA------------------------------------------GAGG-------AAATCAGAAGGCCT-TTGAGAGTTCCATGCTTCCTTGCATTCAATAGTATAACAT---AAAGCATATGGAATGTAAAGAAGTATGGAGCGAAATCTGGCAAGACAGCGT-----------------------------------------------------------------------SizeHit CountTotal NormTotalM022

Male-body		M040

Female-body		M059

Embryo		M062

Head		V043

Embryo		V051

Head		V112

Male-body		SRR902010

Ovary		SRR902011

Testis		SRR902012

CNS imaginal disc
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGGAG............................................................................................2213337846.00333784623171829879002725102462183888995579129765175452101881
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGGA.............................................................................................211426786.0042678602628073506678221751767366063140492573327998
.....................................................................................................................................................................................GGAATGTAAAGAAGTATGGAG............................................................................................211168799.0016879901674302257145266375183107214
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGG..............................................................................................201119464.001194640828566291168196258023264185440192898
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGGAGT...........................................................................................231105684.00105684146082381945662008476135847273931322729
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGGAGA...........................................................................................23132261.003226111911079382746110838369601565451
.....................................................................................................................................................................................GGAATGTAAAGAAGTATGGA.............................................................................................20125785.0025785025574150861235360
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGGAC............................................................................................22116851.001685113682690730792048191191167161640
....................................................................................................................................................................................TGGAATGTAAAGAAGTATG...............................................................................................19112156.0012156093272514273071960124229143
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGGAA............................................................................................2219115.0091150599794132121361202310722951
.....................................................................................................................................................................................GGAATGTAAAGAAGTATGG..............................................................................................1918311.00831108280100117183
......................................................................................................................................................................................GAATGTAAAGAAGTATGGAG............................................................................................2016881.006881176319283894141240112
.....................................................................................................................................................................................GGAATGTAAAGAAGTATGGAGT...........................................................................................2214384.00438404289954550679
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGGAGTT..........................................................................................2413623.003623120228197211061159465634
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGGAGC...........................................................................................2313115.0031150528829637349262309496785
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGGAT............................................................................................2212138.00213808272436287283482637264
.....................................................................................................................................................................................GGAATGTAAAGAAGTATGGAGA...........................................................................................2211862.0018620185021116100
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGGT.............................................................................................2111817.0018170755916795839274425
......................................................................................................................................................................................GAATGTAAAGAAGTATGGA.............................................................................................191994.009940939124738120
.....................................................................................................................................................................................GGAATGTAAAGAAGTATG...............................................................................................181938.00938093600000200
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGGAGTTT.........................................................................................251806.0080604778123162691245
.......................................................................................................................................................................................AATGTAAAGAAGTATGGAG............................................................................................191760.007601565266201546000
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGGAGAA..........................................................................................241747.00747045892131520812174
...................................................................................................................................................................................ATGGAATGTAAAGAAGTATGGAG............................................................................................231706.0070606543312149461
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGGAGG...........................................................................................231704.0070405982313181318696
........................................................................................................................................................................................ATGTAAAGAAGTATGGAG............................................................................................181700.0070076077891051100
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGGG.............................................................................................211611.006110148246981326613124
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGAG.............................................................................................211593.00593012461419543501565
.....................................................................................................................................................................................GGAATGTAAAGAAGTATGGAA............................................................................................211543.00543054200001000
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGGAAA...........................................................................................231514.00514035416012131271
......................................................................................................................................................................................GAATGTAAAGAAGTATGGAGA...........................................................................................211431.0043112771139139000
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGT..............................................................................................201427.004270319131787504
.....................................................................................................................................................................................GGAATGTAAAGAAGTATGGAC............................................................................................211415.00415040723000300
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGGAGTA..........................................................................................241415.00415021645261479188
......................................................................................................................................................................................GAATGTAAAGAAGTATGG..............................................................................................181332.00332032700212000
......................................................................................................................................................................................GAATGTAAAGAAGTATGGAGT...........................................................................................211326.003264229934473000
....................................................................................................................................................................................TGGAATGTAAAGAAGTAT................................................................................................181321.00321024941123951316
..........................................................................................................................................CCATGCTTCCTTGCATTCAATA......................................................................................................................................221308.003080128150131601000
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGGC.............................................................................................211217.002170867245553235
.....................................................................................................................................................................................GGAATGTAAAGAAGTATGGAGTT..........................................................................................231206.00206020600000000
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGA..............................................................................................201174.001740117630733341
...................................................................................................................................................................................ATGGAATGTAAAGAAGTATGGA.............................................................................................221173.001730122555721233
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGGAGAT..........................................................................................241158.00158083520360212
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGGTT............................................................................................221152.00152079309251323
......................................................................................................................................................................................GAATGTAAAGAAGTATGGAGAA..........................................................................................221144.00144064150173000
.......................................................................................................................................................................................AATGTAAAGAAGTATGGA.............................................................................................181111.00111010900011000
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGGACT...........................................................................................23185.0085052540218022
.....................................................................................................................................................................................GGAATGTAAAGAAGTATGGAT............................................................................................21179.007907700001001
..........................................................................................................................................CCATGCTTCCTTGCATTCAAT.......................................................................................................................................21179.0079049232410000
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGGCT............................................................................................22177.0077000026483000
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGGATT...........................................................................................23175.0075042141221031
.....................................................................................................................................................................................GGAATGTAAAGAAGTATGGAGC...........................................................................................22171.007106234200000
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGGACA...........................................................................................23166.006605004019011
.....................................................................................................................................................................................GGAATGTAAAGAAGTATGGT.............................................................................................20162.006205800002020
droPer2
GAGTCCC--CACCCAGGAGAGGG----------------------CTAATAAAAGTCA----------------------------------------A---AGACG-------GAATCAGAAGGCCT-TTGAGAGTTCCATGCTTCCTTGCATTCAATAGTATAACAT---AAAGCATATGGAATGTAAAGAAGTATGGAGCGAAATCTGGCAAGACATC-------------------------------------------------------------------------SizeHit CountTotal NormTotalM021

Embryo		M042

Female-body		V042

Embryo		V050

Head		V057

Head		V111

Male-body
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGGAG............................................................................................2212788939.00278893953517316416811302722339961865621
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGGA.............................................................................................211331653.00331653074607611951219511227412
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGGAGT...........................................................................................23186832.00868320100543251731535769365
.....................................................................................................................................................................................GGAATGTAAAGAAGTATGGAG............................................................................................21163101.0063101061507361161611281
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGG..............................................................................................20146834.004683401144144846186532638
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGGAGA...........................................................................................23131022.003102204112109534163024637
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGGAC............................................................................................2219040.009040016856343612615595
.....................................................................................................................................................................................GGAATGTAAAGAAGTATGGA.............................................................................................2018865.00886508587057266
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGGAA............................................................................................2217740.00774001648261624095495
....................................................................................................................................................................................TGGAATGTAAAGAAGTATG...............................................................................................1914344.00434401092101192392884
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGGAT............................................................................................2213929.0039290835291003702595
......................................................................................................................................................................................GAATGTAAAGAAGTATGGAG............................................................................................2013230.0032301920022365681053
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGGAGTT..........................................................................................2412175.00217502793381421713
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGGAGC...........................................................................................2312053.002053017660932091515
.....................................................................................................................................................................................GGAATGTAAAGAAGTATGGAGT...........................................................................................2211388.00138801118186255
.....................................................................................................................................................................................GGAATGTAAAGAAGTATGG..............................................................................................1911383.0013830131003268
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGAG.............................................................................................2111269.001269031631131908
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGGT.............................................................................................2111163.001163075321112952
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGGAGAA..........................................................................................241613.006130660634507
......................................................................................................................................................................................GAATGTAAAGAAGTATGGA.............................................................................................191604.006040283039309
.....................................................................................................................................................................................GGAATGTAAAGAAGTATGGAGA...........................................................................................221531.00531049400037
......................................................................................................................................................................................GAATGTAAAGAAGTATGGAGA...........................................................................................211474.004740451315410
......................................................................................................................................................................................GAATGTAAAGAAGTATGGAGT...........................................................................................211379.00379440144326
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGGAGTTT.........................................................................................251369.003690450419301
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGGAAA...........................................................................................231339.003390481114275
........................................................................................................................................................................................ATGTAAAGAAGTATGGAG............................................................................................181334.003341914081110146
.......................................................................................................................................................................................AATGTAAAGAAGTATGGAG............................................................................................191292.002921116011201674
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGGAGG...........................................................................................231278.00278020430863
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGGAGTA..........................................................................................241263.002630400720196
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGGG.............................................................................................211256.0025602511243175
...................................................................................................................................................................................ATGGAATGTAAAGAAGTATGGAG............................................................................................231208.00208016801930
......................................................................................................................................................................................GAATGTAAAGAAGTATGGAGAA..........................................................................................221203.0020306003194
.....................................................................................................................................................................................GGAATGTAAAGAAGTATGGAC............................................................................................211181.0018101741105
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGT..............................................................................................201170.001700350312120
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGGC.............................................................................................211166.001660120258643
....................................................................................................................................................................................TGGAATGTAAAGAAGTAT................................................................................................181161.001610850103729
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGGAGAT..........................................................................................241159.00159018007134
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGA..............................................................................................201140.0014005206280
.....................................................................................................................................................................................GGAATGTAAAGAAGTATG...............................................................................................181137.0013701330004
.....................................................................................................................................................................................GGAATGTAAAGAAGTATGGAA............................................................................................211137.0013701360001
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGGCT............................................................................................221135.00135002138931
......................................................................................................................................................................................GAATGTAAAGAAGTATGGAGTA..........................................................................................22190.00900401184
...................................................................................................................................................................................ATGGAATGTAAAGAAGTATGGA.............................................................................................22187.008712603651
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGGACT...........................................................................................23176.007601511752
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGGATT...........................................................................................23174.007401801946
......................................................................................................................................................................................GAATGTAAAGAAGTATGG..............................................................................................18174.007405001221
......................................................................................................................................................................................GAATGTAAAGAAGTATGGAGTT..........................................................................................22165.00650101162
droAna3
AAGTTTA--GAATTAATGGTAAAGTTTT----CCAAAAAGTGA-----CGA---------------------------------------------------AAAAAT-----A--TCAAGAGAGCCT-TTGAGAGTTCCATGCTTCCTTGCATTCAATAGTATAATAT---CAAGCATATGGAATGTAAAGAAGTATGGAGCGAAATCTGGCAAGACTTCAAGTTT-AAATTTCAAAAAAT--GG----TAAGTT----TTAAGAAAAA-AATATT-----------------SizeHit CountTotal NormTotalM044

Female-body		M058

Embryo		V039

Embryo		V055

Head		V105

Male-body		V106

Head
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGGAG............................................................................................2211706439.0017064393059483460518607162577556127628575
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGGA.............................................................................................211148875.00148875307482346368114137967724323
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGGAGT...........................................................................................23151950.00519506762154619136122895410885
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGG..............................................................................................20143071.00430718483456381807264825805
.....................................................................................................................................................................................GGAATGTAAAGAAGTATGGAG............................................................................................21136245.003624535241101596342541
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGGAGA...........................................................................................23118418.00184183638335541135102972959
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGGAT............................................................................................22117948.001794856519193375672810068
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGGAA............................................................................................2214369.004369113547273522144664
.....................................................................................................................................................................................GGAATGTAAAGAAGTATGGA.............................................................................................2013523.00352334411175320
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGGAC............................................................................................2213124.003124273156425324567371
......................................................................................................................................................................................GAATGTAAAGAAGTATGGAG............................................................................................2012259.0022591582171552218375
....................................................................................................................................................................................TGGAATGTAAAGAAGTATG...............................................................................................1911591.00159134482117995125
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGGT.............................................................................................2111173.001173522090880149
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGGAGTT..........................................................................................2411092.00109221920379552219
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGGAGC...........................................................................................231979.0097910828411159203214
.....................................................................................................................................................................................GGAATGTAAAGAAGTATGGAGT...........................................................................................221956.00956782100511742
.....................................................................................................................................................................................GGAATGTAAAGAAGTATGG..............................................................................................191953.00953916102331
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGGC.............................................................................................211509.0050914234139752
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGGG.............................................................................................211469.00469194912631460
.....................................................................................................................................................................................GGAATGTAAAGAAGTATGGAGA...........................................................................................221444.00444433000101
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGAG.............................................................................................212443.008861795318342339
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGGAGAA..........................................................................................241425.0042596502424852
.......................................................................................................................................................................................AATGTAAAGAAGTATGGAG............................................................................................191324.003241585121427108
........................................................................................................................................................................................ATGTAAAGAAGTATGGAG............................................................................................181310.00310145810216165
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGGAGTTT.........................................................................................251269.0026960203113343
......................................................................................................................................................................................GAATGTAAAGAAGTATGGA.............................................................................................191241.002411632345019
..........................................................................................................................................CCATGCTTCCTTGCATTCAATA......................................................................................................................................221228.00228197272002
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGGAGG...........................................................................................231207.00207118102142637
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGGAAA...........................................................................................231198.0019848201411519
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGT..............................................................................................202177.003541520626368
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGGAGTA..........................................................................................241174.001744630138230
...................................................................................................................................................................................ATGGAATGTAAAGAAGTATGGAG............................................................................................231149.0014911921999
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGGATT...........................................................................................231135.00135222076935
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGGAGAT..........................................................................................241121.00121250067713
......................................................................................................................................................................................GAATGTAAAGAAGTATGGAGT...........................................................................................211119.00119402025124
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGA..............................................................................................201113.001132690115512
......................................................................................................................................................................................GAATGTAAAGAAGTATGGAGA...........................................................................................211111.00111361024428
......................................................................................................................................................................................GAATGTAAAGAAGTATGGAGTT..........................................................................................221100.00100145126711
.....................................................................................................................................................................................GGAATGTAAAGAAGTATGGAA............................................................................................21195.00958800034
....................................................................................................................................................................................TGGAATGTAAAGAAGTAT................................................................................................18194.009447512786
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGGTT............................................................................................22184.0084500204613
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGGCT............................................................................................22277.50155005695526
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGGAAT...........................................................................................23175.007520004492
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGGATA...........................................................................................23168.006812017417
droBip1
AAGTTTA--CACATAAAGGTGTAGTGCC-------------------CCAAACAGT--------------------------------------------GAAAAAAT-----A--TCAATAGAGCCT-TTGAGAGTTCCATGCTTCCTTGCATTCAATAGTATAATAT---CAAGCATATGGAATGTAAAGAAGTATGGAGCGAAATCTGGCAAGACATCGAGTTT-ACAT-TCAAAAAATAAGG----TATGTT---------TAAAA-AATAT------------------SizeHit CountTotal NormTotal
No Reads
droKik1
GACAATG--TGTCCAAGTGAGTG----------------------CCACTAAAAGTTAGCTG-GC------A---G-CGGAAAA-----T--AAACCAGTG--AA---ATAACC--CATTCGGGGCCT-TTGAGAGTTCCATGCTTCCTTGCATTCAATAGTAAATATT---CAAGCATATGGAATGTAAAGAAGTATGGAGCGAAATCTGGCCAGACATC-------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droFic1
AA---------------------------------------------------AGTTGAACGGGT------C---GCTGGAAAA-----T--AAAACAA---AGAA--A-------CGTAATCAGCCT-TTGAGAGTTCCATGCTTCCTTGCATTCAATAGTATATATT---CAAGCATATGGAATGTAAAGAAGTATGGAGCGAAATCTGGCAACTCATCGAATAAAA---------------------------GTGA----------------------------------SizeHit CountTotal NormTotal
No Reads
droEle1
GCC--------------------------------------------ACTAAAAGTTAACCGGGG------G---G-TGAAAAA-----AGGAAACG------AA-----ATAA--CATAATCAGCCT-TTGAGAGTTCCATGCTTCCTTGCATTCAATAGTATATATT---CAAGCATATGGAATGTAAAGAAGTATGGAGCGAAATCTGGCCTGACATCGAAGTAGA---------------------------GTGAAAACAT-AAAGA---------------------ASizeHit CountTotal NormTotal
No Reads
droRho1
-------------------------------------------------------------------------------------------------------------------------TCAGCCT-TTGAGAGTTCCATGCTTCCTTGCATTCAATAGTATATATT---CAAGCATATGGAATGTAAAGAAGTATGGAGCGAAATCTGGCCAGACATCGCAGCTAA---------------------------GTGTAAAATA-AGA-AAT--------------------SizeHit CountTotal NormTotal
No Reads
droBia1
GAGCC------------------------------------------ACCAAAAGTTAACCCG-C-------------G-A-G-ATAT-----AAACAG---GGA---G-------CAGAATCGGCCT-GTGAGAGTTCCATGCTTCCTTGCATTCAATAGTATCTATT---CAAGCCTATGGAATGTAAAGAAGTATGGAGCGAAATCTGGCCTTACATCA------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
GACTGT------CCAAGTGAGTG----------------------CCACTAAAAGTTAACCGG-CGGAGAATTTGG-TGGA-G-AAATACACAAAACAA---GAA---A-------CATAATCAGCCT-TTGAGAGTTCCATGCTTCCTTGCATTCAATAGTATCTATT---CAAGCATATGGAATGTAAAGAAGTATGGAGCGAAATCTGGCCAAACATCGAAGAT----------------------------------A--TC-AAA-AATG------------------ASizeHit CountTotal NormTotal
No Reads
droEug1
GCG-----------------------------------------------------------GGT------G---A-AGGAAAAAAATATGAAAAACAA---AGA---A-------CTTTATCAGCCT-TTGAGAGTTCCATGCTTCCTTGCATTCAATAGTATATAGA---AAAGCATATGGAATGTAAAGAAGTATGGAGCGAAATCTGGCAAGACATCGAAGTTGAAA---------------ATAT-------ATATAACATAAAA-GTGATT-----------------SizeHit CountTotal NormTotal
No Reads
dm3
CAC----------------------------------------------CAAAAGTTAGCCGCGT------T---G-TGGAAAA-----TCCAAAACAA---AGA---CCATCC--CATATTCAGCCT-TTGAGAGTTCCATGCTTCCTTGCATTCAATAGT-TATATT---CAAGCATATGGAATGTAAAGAAGTATGGAGCGAAATCTGGCGAGACATC-------------------------------------------------------------------------SizeHit CountTotal NormTotalGSM154618

Ovary		GSM154620

Ovary		GSM154621

Ovary		GSM154622

Ovary		GSM180328

Head		GSM180329

Mixed-body		GSM180330

Embryo		GSM180331

Embryo		GSM180332

Embryo		GSM180333

Embryo		GSM180334

Larvae		GSM180335

Disc		GSM180336

Pupae		GSM180337

S2		GSM239041

Head		GSM239050

Head		GSM239051

S2		GSM239052

S2		GSM246084

Head		GSM266765

S2		GSM280082

Ovary		GSM280083

Ovary		GSM280084

Ovary		GSM280085

Testis		GSM280086

Ovary		GSM280087

S2-NP		GSM280088

S2-NP		GSM312995

Head		GSM313160

Head		GSM313161

Head		GSM313162

Head		GSM313163

Head		GSM313164

Head		GSM313165

Head		GSM343287

Embryo		GSM379050

Ovary		GSM379051

Ovary		GSM379052

Ovary		GSM379053

Ovary		GSM379054

Ovary		GSM379055

Ovary		GSM379056

Ovary		GSM379057

Ovary		GSM379058

Ovary		GSM379059

Ovary		GSM379060

Ovary		GSM379061

Ovary		GSM379062

Ovary		GSM379063

Ovary		GSM379064

Ovary		GSM379065

Ovary		GSM379066

Ovary		GSM379067

Ovary		GSM424739

S2		GSM424740

S2		GSM424741

S2		GSM467729

Female-body		GSM467730

Female-body		GSM467731

Female-body		M002

CS		M003

Male-body		M004

Male-body		M005

ML-DmD32		M006

ML-DmD32		M029

OSC		M030

OSC		M031

OSC		M032

S2-R+		M033

S2-R+		M034

S2-R+		M035

S2-R+		M036

S2-R+		M037

S2-R+		M038

S2-R+		M039

S2-R+		M048

S2-R+		OSS2

OSS		OSS6

OSS		OSS7

OSS		OSS8

OSS		S1

Head		S10

Embryo		S11

Embryo		S12

Embryo		S13

Embryo		S14

Embryo		S15

S2-GMR		S16

Kc		S17

Larvae		S18

Larvae		S19

Pupae		S2

Head		S20

Pupae		S21

Disc		S22

Head		S23

Female-body		S24

Male-body		S25

Larvae		S26

Larvae		S27

Pupae		S28

Pupae		S29

Head		S3

Male-body		S30

S2-GMR		S31

S2		S32

S2		S33

Kc		S34

Kc		S35

Kc		S4

Female-body		S5

Disc		S6

Embryo		S7

Embryo		S8

S2		S9

Embryo		SRR001337

Head		SRR001338

Head		SRR001339

Head		SRR001340

Head		SRR001341

Head		SRR001342

Head		SRR001343

Head		SRR001344

Head		SRR001345

Head		SRR001346

Head		SRR001347

Head		SRR001348

Head		SRR001349

Head		SRR001664

Head		SRR010951

Ovary		SRR010952

Ovary		SRR010953

Ovary		SRR010954

Ovary		SRR010955

Ovary		SRR010956

Ovary		SRR010957

Ovary		SRR010958

Ovary		SRR010959

Ovary		SRR010960

Ovary		SRR014268

Embryo		SRR014269

Embryo		SRR014270

Embryo		SRR014271

Embryo		SRR014272

Embryo		SRR014273

Ovary		SRR014274

Ovary		SRR014275

Ovary		SRR014276

Ovary		SRR014277

Ovary		SRR014278

Ovary		SRR014279

Ovary		SRR014280

Ovary		SRR014281

Ovary		SRR014282

Ovary		SRR023197

S2		SRR023399

S2		SRR023400

S2		SRR023402

S2		SRR023407

S2		SRR029028

S2		SRR029029

S2		SRR029030

S2		SRR029031

S2		SRR029032

S2		SRR029033

S2		SRR029608

Head		SRR029633

Head		SRR030145

gb3		SRR031692

Head		SRR031693

Head		SRR031694

Head		SRR031696

Head		SRR031697

Head		SRR031698

Head		SRR031699

Head		SRR031700

Head		SRR031701

Head		SRR031702

Head		SRR031703

Head		SRR031704

Head		SRR032092

S2		SRR032093

S2		SRR032094

S2		SRR032095

S2-NP		SRR032096

S2-NP		SRR032152

Head		SRR060643

Testis		SRR060644

Ovary		SRR060645

Testis		SRR060646

Ovary		SRR060647

Ovary		SRR060648

Ovary		SRR060649

Ovary		SRR060650

Testis		SRR060651

Ovary		SRR060652

Testis		SRR060653

Ovary		SRR065151

Ovary		SRR065152

Ovary		SRR065153

Ovary		SRR065154

Ovary		SRR065155

Ovary		SRR065800

Ovary		SRR065801

Ovary		SRR065802

Ovary		SRR065803

Ovary		SRR065804

Ovary		SRR065805

Ovary		SRR065806

Ovary		SRR065807

Ovary		SRR097865

S2-NP		SRR097866

S2-NP		SRR097867

S2-NP		SRR298536

Ovary		SRR298537

Ovary		SRR298711

Ovary		SRR298712

Ovary		SRR317110

Ovary		SRR317111

Ovary		SRR317112

Ovary		SRR317113

Ovary		SRR317114

Ovary		SRR317115

Ovary		SRR317116

Ovary		SRR317117

Ovary		SRR341115

S2		SRR341116

S2		SRR341117

S2		SRR341118

S2		SRR351332

Mixed-body		SRR351333

Mixed-body		T004

OSC		T005

CME-L1		V001

Embryo		V002

Embryo		V003

S2		V006

Female-body		V007

Head		V008

S2		V009

CME-L1		V010

ML-DmD20-C5		V011

Sg4		V012

Male-body		V013

Head		V014

DTT		V015

DreRFHV		V018

Kc167		V019

GM2		V020

S2-R+		V021

ML-DmD21		V022

ML-DmD32		V023

Head		V024

Kc167		V025

S2-R+		V026

1182-2H		V027

ML-DmD21		V028

CME-W1-Cl.8+		V029

ML-DmD9		V030

ML-DmD8		V031

GM2		V032

S1		V033

CME-W1-Cl.8+		V034

ML-DmD16-C3		V035

ML-DmD32		V036

ML-DmD20-C5		V037

S2		V038

S2		V063

Ovary		V0632

Ovary		V064

Ovary		V0642

Ovary		V065

Ovary		V0652

Ovary		V066

Ovary		V0662

Ovary		V067

S2-NP		V073

mbn2		V074

S3		V075

ML-DmBG1-C1		V076

ML-DmBG3-C2		V077

Head		V078

Head		V079

Head		V080

Head		V081

Embryo		V082

Embryo		V083

Male-body		V084

Female-body		V085

CME-W2		V086

Female-body		V088

Ovary		V0882

Ovary		V089

Ovary		V0892

Ovary		V090

Male-body		V091

fGS/OSS		V092

Male-body		V093

Male-body		V094

S2-R+		V095

S2-R+		V096

Ovary		V097

Ovary		V098

Ovary		V125

ML-DmD9		V126

CME-L1		V127

G2		V128

S3		V129

ML-DmBG1-C1		V130

ML-DmBG3-C2		V131

ML-DmD16-C3		V132

ML-DmD32		V133

Sg4		V134

ML-DmD8		V135

CME-W2		V136

Male-body		V137

Head		V138

Male-body		V139

Female-body		V140

Female-body		V141

Female-body		V142

Female-body		V144

OSC		V145

S2		V146

S1		V147

1182-2H		V148

mbn2		GSM1528798

follicle cells
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....................................................................................................................................................................................TGGAATGTAAAGAAGTATGGAGTAT.........................................................................................2511712.00171200000000000000000000000000000000000000000000000000000000000000000000000000000000000000001010200240025000000000000000100000000101100000000000000000000000000000000000003000004020002000000200000000010000000000000000001004731172530000789479000002000004803000000000000000000000053602040000080159122501721419086001122000000000007649261183321000000
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGGAGTAC.........................................................................................2511561.0015610000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001110000000970549000000000000100000001000000000000000000100010000010100000020010302300110000000000007451102000000
......................................................................................................................................................................................GAATGTAAAGAAGTATGGAGTA..........................................................................................2211512.00151200000000000000000000010000000000000000000000000000000000000000000000000000000100000010001152007570014020000100000113121010101107140000000000000000020019000000000000000612019231611229648228800000200220001070000002100000000026830001000000000000110111000011100400000500000000000000003250201000015347865910213110603139509657001206000000000107010217153607260000000
......................................................................................................................................................................................GAATGTAAAGAAGTATGGAGTT..........................................................................................2211441.001441000000000000000000000000000000000000000000000000000000000000000000000000000001000001400000220010300000000000000000300101000200020000000000000000111021500000000000000044071790824053103700000001311200103000000020000000000682000200000000000033020000040010000030000000000000000021011002000001933383318281790610046033260046150010010003012527623136658767000000
.....................................................................................................................................................................................GGAATGTAAAGAAGTATGGA.............................................................................................2011439.00143900000000010000000000000000010132530180000001101000000000002451700000000000000000000001010000020222055800280200000110010001250601032302422015000000000100000013101700000000000000045590380115691350560136400000350000000010700000000000000000223813916320000120001040000092040000020000000000000002324100120600000811131941729250220101150526000575000000000003623305183425000000
.....................................................................................................................................................................................GGAATGTAAAGAAGTATGGAGA...........................................................................................2211427.001427000000000000000000001010000000000010000100000000000000000000000000000000000000000005000051210044400112210000000000020340204512013276000000000000000000001000000000000000172701710102631904804640000021001100000100000000000000000003012102311000019710300000110000540200000300000000000000001022404000001710242031418903225041704056001951200000000000127757623285049000000
...................................................................................................................................................................................ATGGAATGTAAAGAAGTATGGA.............................................................................................2211395.0013950000030000000000000000000100000000101000000000000011000011100000000000000000020023050000121204401012351014292220000337230031001020002000000000000000001000122122000000000000000150500050005010000000003000010700000040000000000277433532012300002100100210000252050000000000001000000003212183362900001152514262914269460613176201121050033120010000001029135117303623000000
..........................................................................................................................................CCATGCTTCCTTGCATTCAAT.......................................................................................................................................2111354.0013540000050673102000000000000002122831110100000010010000000000017190000000000000000043132794516110713008821201019621098317126114001217391573203405100010003060000000000078110100001400000000000000011220133231230313512142200000500100000000000000000000000003003169234736000000000200000001102000000000000000000000000000000000000004300000000000000000000000000000000000000000
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGGAGTTT.........................................................................................2511247.0012470000000000000000000000100000000000000000010000000000000000000000000000000000000002000000104010136000011000010100000000000001901010000000000000000000013000000000000000110700030305070000002100000000500000001000000000071112106155144500008700200450000162403000008000000000000000210510114312000001452153517100251629270497200238100000000000015422410126336335000000
droSim2
CAC----------------------------------------------CAAAAGTTAGCCGCGT------T---G-TGGAAAA-----TCCAAAACAA---AGA---CCATCC--CATCTTCAGCCT-TTGAGAGTTCCATGCTTCCTTGCATTCAATAGT-TATACT---CAAGCATATGGAATGTAAAGAAGTATGGAGCGAAATCTGGCGAGACATC-------------------------------------------------------------------------SizeHit CountTotal NormTotalM023

Head		M024

Male-body		M025

Embryo		M053

Female-body		O001

Testis		O002

Head		SRR553485

Ovary		SRR553486

Ovary		SRR553487

Ovary		SRR553488

Ovary		SRR618934

Ovary		V044

Embryo		SRR902008

Ovary		SRR902009

Testis		SRR1275487

Male larvae		SRR1275485

Male prepupae		SRR1275483

Male prepupae
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGGAG............................................................................................2211577512.00157751230973234527231410948239106153866381375289216244332383333592033791839696544324
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGGA.............................................................................................211131368.0013136813118437426195979747449648180144985132923705008477545636392
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGGAGCG..........................................................................................24141757.0041757000076653409100001000000
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGGAGA...........................................................................................23139235.0039235114301891300143716381498791309911222311329221397
.....................................................................................................................................................................................GGAATGTAAAGAAGTATGGAG............................................................................................21128968.002896806327954191291210128026330273350151
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGG..............................................................................................20128533.0028533520675117296708128398113175885171665207795254142
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGGAGT...........................................................................................23127703.00277038421654410014371386307415314942680163497732716144
....................................................................................................................................................................................TGGAATGTAAAGAAGTATG...............................................................................................19115832.00158320002472479120632241812398725412139105
....................................................................................................................................................................................TGGAATGTAAAGAAGTAT................................................................................................1819211.009211000331523749029681763312000
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGGAA............................................................................................2214382.004382010169500234235218901101472231421215
.....................................................................................................................................................................................GGAATGTAAAGAAGTATGGA.............................................................................................2013737.00373700036376471011101272013
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGGAGC...........................................................................................2312424.002424134179165586119831741006548456403011
......................................................................................................................................................................................GAATGTAAAGAAGTATGGAG............................................................................................2012344.0023441392522121367171156611478119016011
.....................................................................................................................................................................................GGAATGTAAAGAAGTATGGAGA...........................................................................................2212167.002167010212900436101412006
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGGAT............................................................................................2211844.001844022261007277366572940667496315
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGGAGAA..........................................................................................2411239.00123925064300148461356112382021
.......................................................................................................................................................................................AATGTAAAGAAGTATGGAG............................................................................................191869.00869102372117100120000166900000
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGGAGTT..........................................................................................241808.0080800078001721481541079525227
........................................................................................................................................................................................ATGTAAAGAAGTATGGAG............................................................................................181747.0074786302112281200012011301000
......................................................................................................................................................................................GAATGTAAAGAAGTATGGAGA...........................................................................................211681.00681143006170046222201001
.....................................................................................................................................................................................GGAATGTAAAGAAGTATGG..............................................................................................191680.00680000617124000002001206
.....................................................................................................................................................................................GGAATGTAAAGAAGTATGGAGT...........................................................................................221658.00658123585003025625416204
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGGAC............................................................................................221514.005141327149300342164253593976118
..........................................................................................................................................CCATGCTTCCTTGCATTCAATA......................................................................................................................................221512.00512034810738501100201000
..........................................................................................................................................CCATGCTTCCTTGCATTCA.........................................................................................................................................191477.004770101620725300000000000
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGGAGTTT.........................................................................................251361.0036100090042830124309001
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGAG.............................................................................................211334.003340001230081352122830561002
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGGAGAT..........................................................................................241329.00329000730035430125215000
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGGG.............................................................................................211325.003252250217004782910436001
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGGAGTA..........................................................................................241323.0032320049001717101640190000
.....................................................................................................................................................................................GGAATGTAAAGAAGTATGGAT............................................................................................211296.002960002960000000000000
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGGT.............................................................................................211274.00274000320054103113214010
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGGAGG...........................................................................................231252.002521471450052101817547000
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGGAAA...........................................................................................231231.0023103012800757241965000
..........................................................................................................................................................................................GTAAAGAAGTATGGAG............................................................................................161221.002210000000001219000100
..........................................................................................................................................CCATGCTTCCTTGCATTCAA........................................................................................................................................201216.0021600054316800000000000
....................................................................................................................................................................................TGGAATGTAAAGAAGT..................................................................................................161193.0019300000078813157000000
......................................................................................................................................................................................GAATGTAAAGAAGTATGGA.............................................................................................191175.0017527113612003004001000
.....................................................................................................................................................................................GGAATGTAAAGAAGTATGGAA............................................................................................211172.001720001700000000001001
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGGAGTAT.........................................................................................251170.0017000040001600020139000
.....................................................................................................................................................................................GGAATGTAAAGAAGTATGGAGCG..........................................................................................231133.001330000409300000000000
...................................................................................................................................................................................ATGGAATGTAAAGAAGTATGGAG............................................................................................231123.001231001000000214519000
...................................................................................................................................................................................ATGGAATGTAAAGAAGTATGGA.............................................................................................221116.0011621618013619820441203
..........................................................................................................................................CCATGCTTCCTTGCATTCAAT.......................................................................................................................................211114.001140004337500000200000
....................................................................................................................................................................................TGGAATGTAAAGAAGTA.................................................................................................171110.00110000000111322748001305
..........................................................................................................................................CCATGCTTCCTTGCATTC..........................................................................................................................................181109.001090004456000000000000
...........................................................................................................................................................................................TAAAGAAGTATGGAG............................................................................................151108.001080000000001107000000
......................................................................................................................................................................................GAATGTAAAGAAGTATGGAGT...........................................................................................211100.00100121814530000001101000
......................................................................................................................................................................................GAATGTAAAGAAGTATGGAGAA..........................................................................................22199.0099430890000101100000
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGGATT...........................................................................................23197.00970008002060112020012
.....................................................................................................................................................................................GGAATGTAAAGAAGTATG...............................................................................................18193.00930001577100000000000
.....................................................................................................................................................................................GGAATGTAAAGAAGTATGGAGAA..........................................................................................23173.0073000720000000001000
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGA..............................................................................................20170.0070000550010211109000
.........................................................................................................................................................................................TGTAAAGAAGTATGGAG............................................................................................17159.0059000000000059000000
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGGAGCGAA........................................................................................26158.00580000263200000000000
....................................................................................................................................................................................TGGAATGTAAAGAAG...................................................................................................15151.00510000001711428000000
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGGTT............................................................................................22150.0050000100103017631000
......................................................................................................................................................................................GAATGTAAAGAAGTATGGAGC...........................................................................................21144.00441410832700000000000
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGGAGAC..........................................................................................24142.00420001000101001425000
.......................................................................................................................................................................................AATGTAAAGAAGTATGGA.............................................................................................18139.0039213180112119000000
...................................................................................................................................................................................ATGGAATGTAAAGAAGTATGG..............................................................................................21139.0039100501322300418000
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGGAGAAT.........................................................................................25139.0039000700000010427000
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGGC.............................................................................................21138.00380001000212117113000
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGGAGATT.........................................................................................25137.0037000000000010333000
......................................................................................................................................................................................GAATGTAAAGAAGTATGG..............................................................................................18137.00370102111210010000000
......................................................................................................................................................................................GAATGTAAAGAAGTATGGAGTT..........................................................................................22134.0034201700011053112001
.......................................................................................................................................................................................AATGTAAAGAAGTATGGAGA...........................................................................................20133.0033150240010002000000
.....................................................................................................................................................................................GGAATGTAAAGAAGTATGGAGC...........................................................................................22133.0033030201500010102000
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGGAAT...........................................................................................23132.0032010600032120017000
droSec2
CAC----------------------------------------------CAAAAGTTAGCCGCGT------T---G-TGGAAAA-----TCCAAAACAA---GGA---CCATCC--CATCTTCAGCCT-TTGAGAGTTCCATGCTTCCTTGCATTCAATAGT-TATACT---CAAGCATATGGAATGTAAAGAAGTATGGAGCGAAATCTGGCGAGACATC-------------------------------------------------------------------------SizeHit CountTotal NormTotalM054

Female-body		V113

Male-body		V114

Embryo		V115

Head
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGGAG............................................................................................2213611928.0036119287214591491441763386635642
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGGAGA...........................................................................................231257456.0025745657163170753242327117
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGGA.............................................................................................211205205.002052058965594285582515440
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGGAGT...........................................................................................231124089.001240891852982416916013984
.....................................................................................................................................................................................GGAATGTAAAGAAGTATGGAG............................................................................................21181158.008115879179956546477
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGG..............................................................................................20160510.006051018302342516937264
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGGAA............................................................................................22115035.0015035451690613201138
.....................................................................................................................................................................................GGAATGTAAAGAAGTATGGA.............................................................................................2019669.00966996005748
.....................................................................................................................................................................................GGAATGTAAAGAAGTATGGAGA...........................................................................................2216931.0069316591314125
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGGAGC...........................................................................................2316377.006377766286216491100
......................................................................................................................................................................................GAATGTAAAGAAGTATGGAGA...........................................................................................2116177.006177935439519828
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGGAGAA..........................................................................................2415944.0059441839369719389
......................................................................................................................................................................................GAATGTAAAGAAGTATGGAG............................................................................................2015145.00514529681002468707
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGGAT............................................................................................2215001.00500113452762260634
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGGAC............................................................................................2214007.0040076722300364671
....................................................................................................................................................................................TGGAATGTAAAGAAGTATG...............................................................................................1913274.0032741194160851421
.....................................................................................................................................................................................GGAATGTAAAGAAGTATGGAGT...........................................................................................2212926.0029262106582126112
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGGAGTT..........................................................................................2412914.002914376206043435
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGGAGAT..........................................................................................2412756.00275661419285209
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGGT.............................................................................................2112441.00244123118878315
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGAG.............................................................................................2112421.002421902743449327
.....................................................................................................................................................................................GGAATGTAAAGAAGTATGG..............................................................................................1911975.00197519422328
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGGAAA...........................................................................................2311435.001435364991179
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGGAGTA..........................................................................................2411220.0012202158758122
.....................................................................................................................................................................................GGAATGTAAAGAAGTATGGAT............................................................................................211859.00859857200
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGGAGTTT.........................................................................................251773.00773765763118
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGGAGG...........................................................................................231755.007554682212541
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGGG.............................................................................................211753.00753620852820
.......................................................................................................................................................................................AATGTAAAGAAGTATGGAG............................................................................................191657.006573118416894
......................................................................................................................................................................................GAATGTAAAGAAGTATGGAGAA..........................................................................................221653.006531274062118
.....................................................................................................................................................................................GGAATGTAAAGAAGTATGGAA............................................................................................211515.00515509501
........................................................................................................................................................................................ATGTAAAGAAGTATGGAG............................................................................................181508.0050816612818925
......................................................................................................................................................................................GAATGTAAAGAAGTATGGAGT...........................................................................................211495.004951142783865
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGA..............................................................................................201483.00483263184432
......................................................................................................................................................................................GAATGTAAAGAAGTATGGA.............................................................................................191418.0041835538916
......................................................................................................................................................................................GAATGTAAAGAAGTATGGAGTT..........................................................................................221307.00307241871779
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGGAGAAT.........................................................................................251301.0030157228115
...................................................................................................................................................................................ATGGAATGTAAAGAAGTATGGAG............................................................................................231274.00274224182111
.......................................................................................................................................................................................AATGTAAAGAAGTATGGAGA...........................................................................................201232.0023286108236
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGGATA...........................................................................................231225.0022550137335
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGT..............................................................................................201216.0021699104013
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGGAGTAT.........................................................................................251208.0020844147215
....................................................................................................................................................................................TGGAATGTAAAGAAGTAT................................................................................................181206.002061712528
.....................................................................................................................................................................................GGAATGTAAAGAAGTATGGAGAA..........................................................................................231206.00206200600
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGGAAT...........................................................................................231171.0017142109218
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGGAGATT.........................................................................................251170.0017022134014
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGGATT...........................................................................................231163.001636577417
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGGC.............................................................................................211145.001453088522
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGGACA...........................................................................................231139.0013915109213
.....................................................................................................................................................................................GGAATGTAAAGAAGTATGGAGC...........................................................................................221134.001349517715
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGGTT............................................................................................221134.00134996722
.....................................................................................................................................................................................GGAATGTAAAGAAGTATG...............................................................................................181131.00131130100
......................................................................................................................................................................................GAATGTAAAGAAGTATGGAGTA..........................................................................................221130.001301899211
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGGAGAC..........................................................................................241129.00129447519
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGGTA............................................................................................221120.001201482024
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGAGA............................................................................................221102.00102296229
.....................................................................................................................................................................................GGAATGTAAAGAAGTATGAG.............................................................................................20198.009897010
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGGACT...........................................................................................23196.0096157407
......................................................................................................................................................................................GAATGTAAAGAAGTATGG..............................................................................................18192.009277708
..........................................................................................................................................CCATGCTTCCTTGCATTCAATA......................................................................................................................................22189.0089662183
droYak3
AAATC--------------------------------------------------------------------------------------CAAAACAA---AGA---ACATCC--CACCATCAGCCT-TTGAGAGTTCCATGCTTCCTTGCATTCAATAGTATATACT---CAAGCATATGGAATGTAAAGAAGTATGGAGCGAAATCTGGCGAGTCATCGGAGTTGA---------------------------AAGTAAAAGA-AAAGAGCATT-----------------SizeHit CountTotal NormTotalM026

Head		M043

Female-body		M056

Embryo		V046

Embryo		V052

Head		V058

Head		V120

Male-body		SRR1275488

Male larvae		SRR1275486

Male prepupae		SRR1275484

Male prepupae		GSM1528802

follicle cells
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGGAG............................................................................................2212707444.0027074441091091127504930305630287101305746366171204116835770
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGGA.............................................................................................211197551.00197551310897423469177314607456532261101310634
.....................................................................................................................................................................................GGAATGTAAAGAAGTATGGAG............................................................................................211127313.001273130126500195208107531130110
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGGAGT...........................................................................................231105095.0010509542389439743334457025863462245523250
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGGAGA...........................................................................................23135158.00351580142415218638236109413648160670
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGG..............................................................................................20129045.002904501464132387312465495275247320
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGGAC............................................................................................22121762.002176247142027178151675110020
.....................................................................................................................................................................................GGAATGTAAAGAAGTATGGA.............................................................................................20112064.00120640120225005310010
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGGAGC...........................................................................................2319627.00962704898251386201253540020
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGGAA............................................................................................2216647.006647240365121005220817280081
......................................................................................................................................................................................GAATGTAAAGAAGTATGGAG............................................................................................2014732.004732324283143978371320000
.....................................................................................................................................................................................GGAATGTAAAGAAGTATGGAGT...........................................................................................2213462.0034620276653923271230020
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGGAT............................................................................................2212963.00296301491255174653396277050
.....................................................................................................................................................................................GGAATGTAAAGAAGTATGGAGA...........................................................................................2211651.0016510161524000120000
.....................................................................................................................................................................................GGAATGTAAAGAAGTATGG..............................................................................................1911544.00154401534300160000
....................................................................................................................................................................................TGGAATGTAAAGAAGTATG...............................................................................................1911531.00153108013981568555001332
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGGAGTT..........................................................................................2411250.0012500345266306405561042
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGGG.............................................................................................211898.008980677685311391040
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGGAGG...........................................................................................231725.00725041219911111910000
...................................................................................................................................................................................ATGGAATGTAAAGAAGTATGGAG............................................................................................231692.006920594352402351010
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGGAGAA..........................................................................................241654.0065403302823262630020
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGAG.............................................................................................211634.0063407595312104180030
........................................................................................................................................................................................ATGTAAAGAAGTATGGAG............................................................................................181490.004901636240529560000
..........................................................................................................................................CCATGCTTCCTTGCATTCAATA......................................................................................................................................221458.004580273173110010000
.......................................................................................................................................................................................AATGTAAAGAAGTATGGAG............................................................................................191457.004572236616704420000
......................................................................................................................................................................................GAATGTAAAGAAGTATGGA.............................................................................................191405.0040513822104150000
.....................................................................................................................................................................................GGAATGTAAAGAAGTATGGAA............................................................................................211366.003660364000020000
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGGT.............................................................................................211346.003460892543461751012
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGGAAA...........................................................................................231344.003440205803151130000
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGT..............................................................................................201336.00336014300313000303
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGGAGTA..........................................................................................241311.0031101273332131330000
...................................................................................................................................................................................ATGGAATGTAAAGAAGTATGGA.............................................................................................221280.00280811370918671030
......................................................................................................................................................................................GAATGTAAAGAAGTATGGAGT...........................................................................................211221.00221510959321420000
.....................................................................................................................................................................................GGAATGTAAAGAAGTATGGAGC...........................................................................................221169.0016905610640210000
......................................................................................................................................................................................GAATGTAAAGAAGTATGGAGA...........................................................................................211160.0016009423425320000
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGGAGAT..........................................................................................241125.0012504613003590013
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGGC.............................................................................................211120.00120025191147260010
....................................................................................................................................................................................TGGAATGTAAAGAAGTAT................................................................................................181118.0011808621314100011
....................................................................................................................................................................................TGGAATGTAAAGAAGTATC...............................................................................................191114.001140411000000000
..........................................................................................................................................CCATGCTTCCTTGCATTCAAT.......................................................................................................................................211110.001100693630020000
......................................................................................................................................................................................GAATGTAAAGAAGTATGGAGTT..........................................................................................221110.0011001820103680000
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGGATT...........................................................................................23198.0098040253010200000
.....................................................................................................................................................................................GGAATGTAAAGAAGTATG...............................................................................................18187.0087087000000000
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGGAGTTT.........................................................................................25282.0016404024108910000
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGA..............................................................................................20179.007902023012310011
droEre2
AACCT----------------------------------------------------AGCCG-------------------------------AAACAA---GGA---C-------C---TCCAGCCT-GTGAGAGTTCCATGCTTCCTTGCATTCAATAGT-TATACT---CAAGCATATGGAATGTAAAGAAGTATGGAGCGAAATCTGGCGAGACATCGGAAAA-------------------TTAAA-----ATGTAAA-------------------------------SizeHit CountTotal NormTotalM055

Female-body		M057

Embryo		V060

Head		V040

Embryo		V107

Male-body		V108

Head		GSM1528801

follicle cells
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGGAG............................................................................................2214204467.00420446714518867024510558119238212790021105055316
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGGA.............................................................................................211258677.0025867713324226215003148792077242470
.....................................................................................................................................................................................GGAATGTAAAGAAGTATGGAG............................................................................................211158970.0015897015716626921327168353
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGGAGT...........................................................................................231124373.0012437335519361020571735622021922822
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGGAGA...........................................................................................23158023.0058023246055677603482509866405
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGG..............................................................................................20152952.0052952242594724631192062770120
.....................................................................................................................................................................................GGAATGTAAAGAAGTATGGA.............................................................................................20114046.00140461396105262160
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGGAA............................................................................................2219945.009945470965166148378910680
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGGAT............................................................................................2219199.0091991747162351519105146256
......................................................................................................................................................................................GAATGTAAAGAAGTATGGAG............................................................................................2018743.008743661217458711088740
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGGAC............................................................................................2214747.0047479022170691986597481
.....................................................................................................................................................................................GGAATGTAAAGAAGTATGGAGT...........................................................................................2214722.00472239323916126121110
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGGAGC...........................................................................................2313292.0032927205101002247649731
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGAG.............................................................................................2113228.0032281593712219306650
.....................................................................................................................................................................................GGAATGTAAAGAAGTATGGAGA...........................................................................................2212806.00280627501024940
....................................................................................................................................................................................TGGAATGTAAAGAAGTATG...............................................................................................1912663.00266310976361512252840
.....................................................................................................................................................................................GGAATGTAAAGAAGTATGG..............................................................................................1912416.00241623801013040
......................................................................................................................................................................................GAATGTAAAGAAGTATGGAGA...........................................................................................2111942.001942527324211482380
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGGAGAA..........................................................................................2411749.001749751102108371300
.....................................................................................................................................................................................GGAATGTAAAGAAGTATGGAT............................................................................................2111670.0016701660001450
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGGAGTT..........................................................................................2411589.001589484261297942640
......................................................................................................................................................................................GAATGTAAAGAAGTATGGAGT...........................................................................................2111274.00127428691287821770
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGGG.............................................................................................2111129.001129911887864510
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGGAGG...........................................................................................2311096.0010967941958851823
.......................................................................................................................................................................................AATGTAAAGAAGTATGGAG............................................................................................1911093.00109354946242112990
........................................................................................................................................................................................ATGTAAAGAAGTATGGAG............................................................................................181803.0080323367222982352
......................................................................................................................................................................................GAATGTAAAGAAGTATGGAGTA..........................................................................................221790.007909611314332460
......................................................................................................................................................................................GAATGTAAAGAAGTATGGA.............................................................................................191678.00678534001114290
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGGAGTA..........................................................................................241646.006462254122316861
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGGAAA...........................................................................................231601.00601305260252360
...................................................................................................................................................................................ATGGAATGTAAAGAAGTATGGAG............................................................................................231591.0059151232034382
.....................................................................................................................................................................................GGAATGTAAAGAAGTATGGAA............................................................................................211568.00568567000100
......................................................................................................................................................................................GAATGTAAAGAAGTATGGAGAA..........................................................................................221471.0047198060304630
......................................................................................................................................................................................GAATGTAAAGAAGTATGGAGTT..........................................................................................221427.00427430452471280
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGGT.............................................................................................211408.004081203224195640
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGGAGTTT.........................................................................................251361.0036194110205600
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGGAGAT..........................................................................................241231.0023180111124240
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGA..............................................................................................201207.002071615003380
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGGATT...........................................................................................231207.0020710607545440
.....................................................................................................................................................................................GGAATGTAAAGAAGTATGAG.............................................................................................201206.00206206000000
......................................................................................................................................................................................GAATGTAAAGAAGTATGG..............................................................................................181200.002009000086240
...................................................................................................................................................................................ATGGAATGTAAAGAAGTATGGA.............................................................................................221163.001635914573210
....................................................................................................................................................................................TGGAATGTAAAGAAGTAT................................................................................................181157.0015711103022210
..........................................................................................................................................CCATGCTTCCTTGCATTCAATA......................................................................................................................................221150.00150895604010
....................................................................................................................................................................................TGGAATGTAAAGAAGTATGT..............................................................................................201145.0014571024223511
.....................................................................................................................................................................................GGAATGTAAAGAAGTATGGAC............................................................................................211127.00127126100000
.....................................................................................................................................................................................GGAATGTAAAGAAGTATG...............................................................................................181102.00102101000100

Generated: 10/20/2015 at 07:33 PM