der_860

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- CACTCGGGGACTGACAGCTAGCAATCTCAACGACGATCTCAGCAGCAGCGGTGAGCAATCCAACTCCACAAATTCAAACGATGCAGGGCGCTCGCCTGCCTCCTCACCTGCCTCAAGTTCCATGCAGGATCTGATCACGCGTGACCTGAGGAACACCCAACAGGTGATTGCCCACAACCAGCACACCATCGATCTCTTCGAGCAGGCCTTGAACGACTTTCAGGCGCTAGCCATGCGCAACTATGTTGACT *********************************************************************************************************************...(((.((...((.....((((.(((((.((.....))..))))).)).))...)).)).))).............*****************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M055 female body	V108 head	V107 male body	V040 embryo	V060 head
..CTCGGGGACTGACAGCTAGC.....................................................................................................................................................................................................................................	20	0	1	2.00	2	0	0	1	0	1
...............................GACGATCTCAGCAGCAGCGGTGAGC...................................................................................................................................................................................................	25	0	1	1.00	1	0	0	1	0	0
.......................................................................................................................CCATGCAGGATCTGATCACGC...............................................................................................................	21	0	1	1.00	1	0	1	0	0	0
....................................................................................................................................................................................................TTCGAGCAGGCCTTGAACGA...................................	20	0	1	1.00	1	1	0	0	0	0
..........................................................................................................................................................................CCCACAACCAGCACACCATCGATCTC.......................................................	26	0	1	1.00	1	1	0	0	0	0
..............................................................................................................................GGATCTGATCACGCGTGACCTG.......................................................................................................	22	0	1	1.00	1	1	0	0	0	0
...............................GACGATCTCAGCAGCAGC..........................................................................................................................................................................................................	18	0	1	1.00	1	1	0	0	0	0
............................................................................................................................CAGGATCTGATCACGCGTGACC.........................................................................................................	22	0	1	1.00	1	0	1	0	0	0
..............................CGACGATCTCAGCAGCAGCGGTGA.....................................................................................................................................................................................................	24	0	1	1.00	1	0	0	0	1	0
....CGGGGACTGACAGCTAGCA....................................................................................................................................................................................................................................	19	0	1	1.00	1	0	1	0	0	0
...............................................................................................................................................................................AGCCAGTACACCATCGATCTCTGC....................................................	24	3	1	1.00	1	1	0	0	0	0
........................................................AATCCCACTACACCAATTCAA..............................................................................................................................................................................	21	3	2	0.50	1	0	0	0	1	0
................................................................................................................................................................................................ACTGTTCGAGCAGGCCTTGAG......................................	21	3	3	0.33	1	0	0	1	0	0

GTGAGCCCCTGACTGTCGATCGTTAGAGTTGCTGCTAGAGTCGTCGTCGCCACTCGTTAGGTTGAGGTGTTTAAGTTTGCTACGTCCCGCGAGCGGACGGAGGAGTGGACGGAGTTCAAGGTACGTCCTAGACTAGTGCGCACTGGACTCCTTGTGGGTTGTCCACTAACGGGTGTTGGTCGTGTGGTAGCTAGAGAAGCTCGTCCGGAACTTGCTGAAAGTCCGCGATCGGTACGCGTTGATACAACTGA *****************************************************...(((.((...((.....((((.(((((.((.....))..))))).)).))...)).)).))).............*********************************************************************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V060 head	V040 embryo	V107 male body	V108 head	GSM1528801 follicle cells
..............................................................................................................................................................................CTTGGTCGTGTGGTAGGT...........................................................	18	2	3	0.33	1	1	0	0	0	0
..........................................................................................................................................................................................................GACCGGGACTTGCTGAAA...............................	18	2	6	0.17	1	0	0	1	0	0
..................................................CACTTGTTAGGTTGACGT.......................................................................................................................................................................................	18	2	10	0.10	1	0	1	0	0	0
.......................................................................................................................................GTGCGCACTGGTGTCCTAG.................................................................................................	19	3	12	0.08	1	0	0	0	1	0
.................................................................................................................................................................................GGTCGTGTGGTAGCTGGAAG......................................................	20	3	15	0.07	1	0	1	0	0	0
...............................................CGCCACTTGTTAGGTTGC..........................................................................................................................................................................................	18	2	20	0.05	1	0	0	0	0	1

Species	Coordinate	ID	Alignment
droEre2	scaffold_4784:19430999-19431249 -	der_860	CACTCGGGGACTGACAGCTAGCAATCTCAAC---GACGA---TCT------CAGCAGCA-------------------------GCGGTGAGCAATCCAACTCCACAAATTCAAACGA---------------------------------------------------------------------------------------------------------------------TGCAGGGCGCTCGCCTGCC---------TC---CTCACCTGCCTCAAGTTCCATGCAGGATCTGATC------------ACGCGTGACCTGAGGAA---CACCCAACAGGTGATT---------GCCCACAACCAGCACACCATCGATCTCTTCGAGCAGGCCTTGAACGACTTTCAGGC---GCTAGCCATGCGCAACTATGTTGACT
droYak3	3L:20911491-20911741 +	dya_845	AACTCGAGGACTGACAGCTAGCAATCTCAAC---GACGA---TCT------CAGCAGCA-------------------------GCGGTGAGCAATCCAACTCCACAAATTCAAACGA---------------------------------------------------------------------------------------------------------------------TGCAGGGCGCTCGCCTGCC---------TC---CTCTCCTGCCTCGAGTTCCATGCAGGATCTGATC------------ACGCGTGACCTGAGGAA---CACCCAACAGGTGATT---------GCCCACAACCAGCACACCATCGATCTCTTCGAGCAGGCCTTGAACGACTTCCAGGC---GCTGGCCATGCGCAACTATGTTGACT
droSec2	scaffold_29:335647-335900 -		AACTCGGGGACTCACGGCTAGCAATCTCAGCAACGACGA---TCT------CAGCAGCA-------------------------GCGGTGAGCAATCCAACTCCACAAATTCAAACGA---------------------------------------------------------------------------------------------------------------------TGCAGGGCGCTCGCCTGCC---------TC---CTCGCCTGCCTCAAGTTCCATGCAGGATCTGATC------------ACGCGTGACCTGAGGAA---CACCCAACAGGTGATT---------GCCCACAACCAGCACACCATCGATCTCTTCGAGCAGGCCTTGAACGACTTCCAGGC---GCTGGCCATGCGCAACTATGTTGACT
droSim2	3l:19283359-19283612 -	dsi_3161	AACTCGGGGACTCACGGCTAGCAATCTCAGCAACGACGA---TCT------CAGCAGCA-------------------------GCGGTGAGCAATCCAACTCCACAAATTCAAACGA---------------------------------------------------------------------------------------------------------------------TGCAGGGCGCTCGCCTGCC---------TC---CTCGCCTGCCTCAAGTTCCATGGAGGATCTGATC------------ACGCGTGACCTGAGGAA---CACCCAACAGGTGATT---------GCCCACAACCAGCACACCATCGATCTCTTCGAGCAGGCCTTGAACGACTTTCAGGC---GCTGGCCATGCGCAACTATGTTGACT
dm3	chr3L:19632783-19633033 -		AACTCGGGGACTGACGGCTAGCAATCTCAAC---GATGA---TCT------CAGCAGCA-------------------------GCGGTGAGCAATCCAACTCCACAAATTCAAACGA---------------------------------------------------------------------------------------------------------------------TGCAGGGCGCTCGCCTGCC---------TC---CTCGCCTGCCTCAAGTTCCATGCAGGATCTGATC------------ACGCGTGACCTGAGGAA---CACCCAACAGGTGATT---------GCCCACAACCAGCACACCATTGATCTCTTCGAGCAGGCCTTGAACGACTTCCAGGC---GCTGGCCATGCGCAACTATGTTGACT
droEug1	scf7180000409472:182373-182623 -		TACAAGGGGACTGGCAGCTAGTAACATCAGC---GACGA---TCC------CAGCAGCA-------------------------GCGGTGAGCAAACCAACTCCACAAATCCACAAGA---------------------------------------------------------------------------------------------------------------------AACAGGACGCTCGCCTGCC---------TC---CTCACCTGCCCCTAGTTCCATGCAGGATCTGATC------------AGGCGGGACCTGAGGAA---CACCCAACAGGTTATT---------GCCCATAATCAGCACACAATCGATCTCTTCGAGCAGGCCTTGAACGACTTCCAGGC---GCTAACAATGCGAAACTATGTGGACT
droBia1	scf7180000302377:1972118-1972374 +		CACACGTGGATTTGCAGCTAGTAACATCAGC---GACGA---TCCGAGCAGCAGCAGCA-------------------------GCGGTGAGCAAACCAACTCCACAAACCCACAGGA---------------------------------------------------------------------------------------------------------------------TACAGGGCGCTCGCCTGCC---------TC---CTCACCTGCCTCGAGTTCCATGCAAGACCTGATC------------TCGCGGGACCTGAGAAA---CACCCAACAGGTGATC---------GCCCACAATCAACACACCATTGATCTCTTCGAGCAGGCCTTGAACGACTTCCAGGC---GCTAGCTATGCGCAACTATGTGGACT
droTak1	scf7180000412525:12170-12429 -		CACCCGGGGATTAGCAGCCAGCAACATCAGT---GACGA---TCC------AAGCAGCA-------------GCAGCA---GCAGCGGTGAGCAAACCAACTCTACAAACCCACAGGA---------------------------------------------------------------------------------------------------------------------TGAAGGACGCTCGCCTGCC---------TC---CCCGCCTGCCTCGAGTTCCATGCAAGACCTGATA------------ACCCGGGACCTGAGGAA---CACCCAACAGGTTATT---------GCCCACAATCAGCACACCATCGATCTCTTTGAGCAGGCCTTGAATGACTTCCAGGC---GCTAACCATGCGCAACTATGTGGACT
droEle1	scf7180000491249:6938467-6938726 -		CACCCGTGGCTTGGCGGCCAGCAACATCAGC---GACGA---TCC------CAGCAGCA-------------GCAGCA---GCAGCGGTGAGCAAACCAACTCCACAAATCCACAGGA---------------------------------------------------------------------------------------------------------------------CGCAGGACGCTCGCCTGCC---------TC---CTCGCCTGCCTCGAGTTCCATGCAGGATCTGATC------------ACGCGGGACCTGCGGAA---CACCCAGCAGGTGATT---------GCCCACAACCAGCACACCATCGATCTCTTCGAGCAGGCCTTGAACGACTTCCAGGC---GCTGACCATGCGCAACTATGTGGACT
droFic1	scf7180000453831:190013-190263 -		CACCCGGGGACTGGCAGCCAGCAACATCAGC---GATGA---TTC------CAGCAGCA-------------------------GCGGTGAGCAATCCAACTCCACAAATTTACAGGA---------------------------------------------------------------------------------------------------------------------TGCAGGACGCTCGCCTGTC---------TC---CGCTTCTGGCTCAAGTTCCATGCAGGATCTGATC------------ACGCGGGACCTGAGGAA---CACACAGCAGGTGATT---------GCCCACAATCAGCACACCATCGATCTCTTCGAGCAGGCCTTGAACGACTTCCAGGC---ACTAACCATGCGCAACTATGTAGACT
droKik1	scf7180000302694:179082-179344 -		CACCCGAGGATTGGCAGCCAGCAACATCAGC---GATGA---CCC------CAGCAGCA-------------GCAGCAGTAGCAGCGGTGAGCAAACCAATCCCACAAATCCGCAGAT---------------------------------------------------------------------------------------------------------------------CGCCGGACGCTCGCCTGCC---------TC---CTCGCCGCCCTCAAGTTCGATTCAGGATCTCATC------------ACGCAAGACTTGAGAAA---CACACAGCAGGTGATT---------GCCCACAATCAGCACACCATAGATCTCTTCGAGCAGGCCTTGAACGACTTCCAGGC---ACTAACCATGCGCAACTACGTGGACA
droAna3	scaffold_13337:17257814-17258055 +		AACCAGAGGACTGGCGGCCAGCAACATCAGC---GAAGA---TCC------C------A-------------------------GCGGTGAGCAAATCCAATCCACAGATCCTCAAGA---------------------------------------------------------------------------------------------------------------------AGCAGGACGCTCGCCTGCC---------TC---CTCTC---CCCCCAACTCCATACAAGATCTCATC------------ACAGAGGACTTGCGGAA---TACCCAGCAGGTGATT---------GCCCACAACCAGCACACCATCGATCTCTTCGAGCAGGCCTTGAACGACTTCCAGGC---GCTGACCATGCGCAATTACGTGGACT
droBip1	scf7180000396741:554374-554624 +		CACCAGAGGGTTGGCGGCCAGCAACATCAGC---GAAGA---TCC------C------A-------------------------GCGGTGAGCAAATCCAATCCACAGATCCACAGGA---------------------------------------------------------------------------------------------------------------------AGCGGGACGCTCGCCTGCC---------TC---CTCGCCG---CCCAATTCCATACAAGATCTCATC------------ACGGAGAACTTGCACAC---CCTCCAGCACACCATCCAGCACATCCAGAACAACCAGCACACCATCGATCTCTTCGAGCAGGCCTTGAATAACTTCCAGGC---GCTAACCATGCGCAGCTACGGGGACT
dp5	Unknown_singleton_3471:8884-9182 +	dps_2367	GACGCGGGGACTGGCGGCCAGCAACATCAGC---GAGGA---TCC---CAGCAGCAGCA-------------------------GCGGTGAGCAAATCATGTCAAACAATCTACAGGACTCTGA---------------------AACACCAGCAGCACCAGGAGCAGTTG------------------------------------------------------------CACATACATCGCGCTCGCTTGCC---------TC---CTCAC---ACTCCAGCTCTATTCAAGATCTCCTGTTCAGCG---CCACCGAGAATCAGTTGAA---CACCCAGCAGGTGATA---------GCCAGCAACCAGCACACCATCGATCTTTTCGAGCAGGCCTTGAACGATTTCCAAGCCAGACTTACCTTGCACACCTTTGCGGACT
droPer2	scaffold_48:483277-483575 -		GACGCGGGGACTGGCGGCCAGCAACATCAGC---GAGGA---TGC---CAGCAGCAGCA-------------------------GCGGTGAGCAAATCATGTCAAACAATCTACAGGACTCTGA---------------------AACAGCAGCAGCACCAGGAGCAGTTG------------------------------------------------------------CACATACATCGCGCTCGCTTGCC---------TC---CTCAC---ACTCCAGCTCTATTCAAGATCTCCTGTTCAGCG---CCACCGAGGATCTGTTGAA---CACCCAGCAGGTGATA---------GCCAGCAACCAGCACACCATCGATCTTTTCGAGCAGGCCTTGAACGATTTCCAAGCCAGACTTACCTTGCACACCTTTGCGGACT
droWil2	scf2_1100000004762:4755982-4756277 -	dwi_2040	TACACGTGGCTTGACCTCCAGCAATATAAGT---GATGA---TCCTGCTGCCACTATAAGCGGTGAGCAACAACAACA------------------ACAACTACAACAACT--------------------------------------------------AGAGCAGGTGAACAA-----------------------------------------------------------TCCAAATCAATCCTCTGCCTCTATAGCCTC---CTCTTCGTCGCCACATTCCATGCAAGATCTCATGTATATGGTATCAACTGAAGATCTTTTGGATACCACACAACAGGTGATA---------GCAACCAATCAGCATACCATAGATCTCTTCGAGCAGGCCTTGAATGATTTTCAAGC---ACTAACCATGCGACAATATGTGGACT
droVir3	scaffold_13049:13211739-13212061 -	dvi_19773	GACCCGTGGCCTGGCCGCCAGCAACATCAGT---GACAG---CGC---CAATGATCTGA-------------------------GCGGTGAGCAAACCTACTCCA---ATCCACAAACATCCAA---------------------CACAACAGGTGCA---------------GAACCGCAGACGCAGGGTACTAGTACGGGTATGGGT---------------GCTATTGC---TGCTGCCCGTTCGCTTGCC---------TC---CTCGC---ACTCGAATTCCATACAGGATCTCATGCTCAGCG---CCACTGAGGATTTGCTGGACACCACACAACAGGTCATT---------GAGACCAATCAACATACCATAGATCTCTTCGAGCAGGCCTTGAACGATTTCCAGGC---GCTCACCCTGTGCAACTTTGTCGACT
droMoj3	scaffold_6680:14151576-14151913 +		GACGCGCGGCCTGGCCGCCAGCAACATCAGC---GACAG---CGT---CAACGACCTAA-------------------------GCGGTGAGCAAATCTACTCCA---ATCCACACACAGCCAA---------------------CACAGCAGGTGCAACAGG------TGATGAGCAGCAGTC---------AGGTGCGGGTGTGGGTCTGGGTCTGGGCTTGGGTGTTGC---TGCCACGCGTTCGCTTGCC---------TC---CTCGC---ACTCGAATTCCATACAGGATCTCATGCGCAGCG---CCACAGAGGATCTGCTGGACACCACGCAACAGGTGATC---------GAGACCAATCAACATACCATAGATCTCTTCGAGCAGGCCTTGAACGACTTCCAGGC---GCTCACGCTGCGCAACTTTGCCGATT
droGri2	scaffold_15110:18650564-18650880 -	dgr_337	GACTCGTGGATTGGCGGCCAGCAATATTAGC---AGTGACAGCGC---CAGTGACTTGA-------------------------GTGGTGAGCTAATCT---ACACAAATCCACAATCCTCCAATCCAAACCAGACATCATCATCATCATCAGCAGCAGCAGCAGCGGT------------------------------------------------------------------TGTTGTTGGTTCGCTTGCC---------TCAAACTCGC---ACTCGAATTCCATACAGGATCTGATGCTGAGCG---CAACGGAGGATTTGCTGGACACCACACAGCAGGTGATC---------GAGACCAATCAGCATTCCATAGATCTCTTCGAGCAGGCCTTGAACGATTTCCAGGC---GCTTACCATGCTCAATTTTGTCGATT

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droEre2

CACTCGGGGACTGACAGCTAGCAATCTCAAC---GACGA---TCT------CAGCAGCA-------------------------GCGGTGAGCAATCCAACTCCACAAATTCAAACGA---------------------------------------------------------------------------------------------------------------------TGCAGGGCGCTCGCCTGCC---------TC---CTCACCTGCCTCAAGTTCCATGCAGGATCTGATC------------ACGCGTGACCTGAGGAA---CACCCAACAGGTGATT---------GCCCACAACCAGCACACCATCGATCTCTTCGAGCAGGCCTTGAACGACTTTCAGGC---GCTAGCCATGCGCAACTATGTTGACT	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
..CTCGGGGACTGACAGCTAGC......................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	2.00	2	0	0	1	0	1	0	0
..................................GACGA---TCT------CAGCAGCA-------------------------GCGGTGAGC...............................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	1	0	0
.............................................................................................................................................................................................................................................................................................CCATGCAGGATCTGATC------------ACGC..............................................................................................................................	21	1	1.00	1	0	0	0	0	0	1	0
..................................................................................................................................................................................................................................................................................................................................................................................................TTCGAGCAGGCCTTGAACGA......................................	20	1	1.00	1	1	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................CCCACAACCAGCACACCATCGATCTC..........................................................	26	1	1.00	1	1	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................GGATCTGATC------------ACGCGTGACCTG......................................................................................................................	22	1	1.00	1	1	0	0	0	0	0	0
..................................GACGA---TCT------CAGCAGCA-------------------------GC......................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	1	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................CAGGATCTGATC------------ACGCGTGACC........................................................................................................................	22	1	1.00	1	0	0	0	0	0	1	0
..............................C---GACGA---TCT------CAGCAGCA-------------------------GCGGTGA.................................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	1	0	0	0
....CGGGGACTGACAGCTAGCA.....................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	1	0

droYak3

AACTCGAGGACTGACAGCTAGCAATCTCAAC---GACGA---TCT------CAGCAGCA-------------------------GCGGTGAGCAATCCAACTCCACAAATTCAAACGA---------------------------------------------------------------------------------------------------------------------TGCAGGGCGCTCGCCTGCC---------TC---CTCTCCTGCCTCGAGTTCCATGCAGGATCTGATC------------ACGCGTGACCTGAGGAA---CACCCAACAGGTGATT---------GCCCACAACCAGCACACCATCGATCTCTTCGAGCAGGCCTTGAACGACTTCCAGGC---GCTGGCCATGCGCAACTATGTTGACT	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
....................................................................................................................................................................................................................................................................................................................................................................................................CGAGCAGGCCTTGAACGACTTC..................................	22	2	0.50	1	0	1	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................TGCAGGGCGCTCGCCTGCC---------T....................................................................................................................................................................................	20	2	0.50	1	0	1	0	0	0	0	0	0	0	0	0

droSec2

AACTCGGGGACTCACGGCTAGCAATCTCAGCAACGACGA---TCT------CAGCAGCA-------------------------GCGGTGAGCAATCCAACTCCACAAATTCAAACGA---------------------------------------------------------------------------------------------------------------------TGCAGGGCGCTCGCCTGCC---------TC---CTCGCCTGCCTCAAGTTCCATGCAGGATCTGATC------------ACGCGTGACCTGAGGAA---CACCCAACAGGTGATT---------GCCCACAACCAGCACACCATCGATCTCTTCGAGCAGGCCTTGAACGACTTCCAGGC---GCTGGCCATGCGCAACTATGTTGACT	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
.......................................................................................................................................................................................................................................................................................................................................................................................................GCAGGCCTTGAACGACTTCCA................................	21	1	2.00	2	2	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................CACACCATCGATCTCTTCGAGCAGGC...............................................	26	1	1.00	1	1	0	0	0

droSim2

AACTCGGGGACTCACGGCTAGCAATCTCAGCAACGACGA---TCT------CAGCAGCA-------------------------GCGGTGAGCAATCCAACTCCACAAATTCAAACGA---------------------------------------------------------------------------------------------------------------------TGCAGGGCGCTCGCCTGCC---------TC---CTCGCCTGCCTCAAGTTCCATGGAGGATCTGATC------------ACGCGTGACCTGAGGAA---CACCCAACAGGTGATT---------GCCCACAACCAGCACACCATCGATCTCTTCGAGCAGGCCTTGAACGACTTTCAGGC---GCTGGCCATGCGCAACTATGTTGACT	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
.......................................................................................................CACAAATTCAAACGA---------------------------------------------------------------------------------------------------------------------TGCAGGG..........................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................TCTCTTCGAGCAGGCCTT............................................	18	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................GATCTGATC------------ACGCGTGACCT.......................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................CGCGTGACCTGAGGAA---CACCCAACAGG...................................................................................................	27	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................CTCAAGTTCCATGGAGGAT....................................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0

dm3

AACTCGGGGACTGACGGCTAGCAATCTCAAC---GATGA---TCT------CAGCAGCA-------------------------GCGGTGAGCAATCCAACTCCACAAATTCAAACGA---------------------------------------------------------------------------------------------------------------------TGCAGGGCGCTCGCCTGCC---------TC---CTCGCCTGCCTCAAGTTCCATGCAGGATCTGATC------------ACGCGTGACCTGAGGAA---CACCCAACAGGTGATT---------GCCCACAACCAGCACACCATTGATCTCTTCGAGCAGGCCTTGAACGACTTCCAGGC---GCTGGCCATGCGCAACTATGTTGACT	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
.....................................................................................................TCCACAAATTCAAACGA---------------------------------------------------------------------------------------------------------------------TGCAGGGCGC.......................................................................................................................................................................................................	27	1	5.00	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
..........................TCAAC---GATGA---TCT------CAGCAGCA-------------------------GCGGT...................................................................................................................................................................................................................................................................................................................................................................	26	1	4.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...TCGGGGACTGACGGCTAGC......................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3
.......................................................................................................................................................................................................................................................................................................TCTGATC------------ACGCGTGACCTGAGGAA---CACC..........................................................................................................	28	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
................................................................................................................................................................................................................................................................................................TGCAGGATCTGATC------------ACGCGTGACC........................................................................................................................	24	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
AACTCGGGGACTGACGGCTAGC......................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................AAC---GATGA---TCT------CAGCAGCA-------------------------GC......................................................................................................................................................................................................................................................................................................................................................................	21	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................ATCTGATC------------ACGCGTGACCTGAGGAA---..............................................................................................................	25	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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................................................................................................................AAACGA---------------------------------------------------------------------------------------------------------------------TGCAGGGCGCTCGCCTGCC---------TC---................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................CCATGCAGGATCTGATC------------A.................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................GATGA---TCT------CAGCAGCA-------------------------GCGGTGAGCA..............................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................GATCTGATC------------ACGCGTGACCTGAG....................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................GTGATT---------GCCCACAACCAG.........................................................................	18	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droEug1

TACAAGGGGACTGGCAGCTAGTAACATCAGC---GACGA---TCC------CAGCAGCA-------------------------GCGGTGAGCAAACCAACTCCACAAATCCACAAGA---------------------------------------------------------------------------------------------------------------------AACAGGACGCTCGCCTGCC---------TC---CTCACCTGCCCCTAGTTCCATGCAGGATCTGATC------------AGGCGGGACCTGAGGAA---CACCCAACAGGTTATT---------GCCCATAATCAGCACACAATCGATCTCTTCGAGCAGGCCTTGAACGACTTCCAGGC---GCTAACAATGCGAAACTATGTGGACT	Size	Hit Count	Total Norm	Total
No Reads

droBia1

CACACGTGGATTTGCAGCTAGTAACATCAGC---GACGA---TCCGAGCAGCAGCAGCA-------------------------GCGGTGAGCAAACCAACTCCACAAACCCACAGGA---------------------------------------------------------------------------------------------------------------------TACAGGGCGCTCGCCTGCC---------TC---CTCACCTGCCTCGAGTTCCATGCAAGACCTGATC------------TCGCGGGACCTGAGAAA---CACCCAACAGGTGATC---------GCCCACAATCAACACACCATTGATCTCTTCGAGCAGGCCTTGAACGACTTCCAGGC---GCTAGCTATGCGCAACTATGTGGACT	Size	Hit Count	Total Norm	Total
No Reads

droTak1

CACCCGGGGATTAGCAGCCAGCAACATCAGT---GACGA---TCC------AAGCAGCA-------------GCAGCA---GCAGCGGTGAGCAAACCAACTCTACAAACCCACAGGA---------------------------------------------------------------------------------------------------------------------TGAAGGACGCTCGCCTGCC---------TC---CCCGCCTGCCTCGAGTTCCATGCAAGACCTGATA------------ACCCGGGACCTGAGGAA---CACCCAACAGGTTATT---------GCCCACAATCAGCACACCATCGATCTCTTTGAGCAGGCCTTGAATGACTTCCAGGC---GCTAACCATGCGCAACTATGTGGACT	Size	Hit Count	Total Norm	Total
No Reads

droEle1

CACCCGTGGCTTGGCGGCCAGCAACATCAGC---GACGA---TCC------CAGCAGCA-------------GCAGCA---GCAGCGGTGAGCAAACCAACTCCACAAATCCACAGGA---------------------------------------------------------------------------------------------------------------------CGCAGGACGCTCGCCTGCC---------TC---CTCGCCTGCCTCGAGTTCCATGCAGGATCTGATC------------ACGCGGGACCTGCGGAA---CACCCAGCAGGTGATT---------GCCCACAACCAGCACACCATCGATCTCTTCGAGCAGGCCTTGAACGACTTCCAGGC---GCTGACCATGCGCAACTATGTGGACT	Size	Hit Count	Total Norm	Total
No Reads

droFic1

CACCCGGGGACTGGCAGCCAGCAACATCAGC---GATGA---TTC------CAGCAGCA-------------------------GCGGTGAGCAATCCAACTCCACAAATTTACAGGA---------------------------------------------------------------------------------------------------------------------TGCAGGACGCTCGCCTGTC---------TC---CGCTTCTGGCTCAAGTTCCATGCAGGATCTGATC------------ACGCGGGACCTGAGGAA---CACACAGCAGGTGATT---------GCCCACAATCAGCACACCATCGATCTCTTCGAGCAGGCCTTGAACGACTTCCAGGC---ACTAACCATGCGCAACTATGTAGACT	Size	Hit Count	Total Norm	Total
No Reads

droKik1

CACCCGAGGATTGGCAGCCAGCAACATCAGC---GATGA---CCC------CAGCAGCA-------------GCAGCAGTAGCAGCGGTGAGCAAACCAATCCCACAAATCCGCAGAT---------------------------------------------------------------------------------------------------------------------CGCCGGACGCTCGCCTGCC---------TC---CTCGCCGCCCTCAAGTTCGATTCAGGATCTCATC------------ACGCAAGACTTGAGAAA---CACACAGCAGGTGATT---------GCCCACAATCAGCACACCATAGATCTCTTCGAGCAGGCCTTGAACGACTTCCAGGC---ACTAACCATGCGCAACTACGTGGACA	Size	Hit Count	Total Norm	Total
No Reads

droAna3

AACCAGAGGACTGGCGGCCAGCAACATCAGC---GAAGA---TCC------C------A-------------------------GCGGTGAGCAAATCCAATCCACAGATCCTCAAGA---------------------------------------------------------------------------------------------------------------------AGCAGGACGCTCGCCTGCC---------TC---CTCTC---CCCCCAACTCCATACAAGATCTCATC------------ACAGAGGACTTGCGGAA---TACCCAGCAGGTGATT---------GCCCACAACCAGCACACCATCGATCTCTTCGAGCAGGCCTTGAACGACTTCCAGGC---GCTGACCATGCGCAATTACGTGGACT	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
...............................................................................................................................................................................................................................................GGACGCTCGCCTGCC---------TC---CTCT............................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
...................................................................................................................................................................................................................................................GCTCGCCTGCC---------TC---CTCTC---CCCCC...................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	1
....................................................................................................................................................................................................................................................................................................................................................................................ACACCATCGATCTCTTCGAGC...................................................	21	1	1.00	1	1	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................AGATCTCATC------------ACAGAGGACTTGC.....................................................................................................................	23	1	1.00	1	0	0	1	0	0	0
.............................................................................................................................................................................................................................................................................................................................GAGGACTTGCGGAA---TACCCAGCA.....................................................................................................	23	1	1.00	1	0	0	0	0	0	1
..................................................................................................................................................................................................................................................................................................................................................CAGCAGGTGATT---------GCCCACAACC...........................................................................	22	1	1.00	1	0	1	0	0	0	0

droBip1

CACCAGAGGGTTGGCGGCCAGCAACATCAGC---GAAGA---TCC------C------A-------------------------GCGGTGAGCAAATCCAATCCACAGATCCACAGGA---------------------------------------------------------------------------------------------------------------------AGCGGGACGCTCGCCTGCC---------TC---CTCGCCG---CCCAATTCCATACAAGATCTCATC------------ACGGAGAACTTGCACAC---CCTCCAGCACACCATCCAGCACATCCAGAACAACCAGCACACCATCGATCTCTTCGAGCAGGCCTTGAATAACTTCCAGGC---GCTAACCATGCGCAGCTACGGGGACT	Size	Hit Count	Total Norm	Total
No Reads

dp5

GACGCGGGGACTGGCGGCCAGCAACATCAGC---GAGGA---TCC---CAGCAGCAGCA-------------------------GCGGTGAGCAAATCATGTCAAACAATCTACAGGACTCTGA---------------------AACACCAGCAGCACCAGGAGCAGTTG------------------------------------------------------------CACATACATCGCGCTCGCTTGCC---------TC---CTCAC---ACTCCAGCTCTATTCAAGATCTCCTGTTCAGCG---CCACCGAGAATCAGTTGAA---CACCCAGCAGGTGATA---------GCCAGCAACCAGCACACCATCGATCTTTTCGAGCAGGCCTTGAACGATTTCCAAGCCAGACTTACCTTGCACACCTTTGCGGACT	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
.............................................................................................................................................................................................................................................................................................................................................................................................................................GCCAGACTTACCTTGCACACCTT........	23	2	17.00	34	0	34	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................GCCAGACTTACCTTGCACACCTTTGC.....	26	2	10.00	20	0	20	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................GCCAGACTTACCTTGCACACCTTTG......	25	2	5.50	11	0	11	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................GCCAGACTTACCTTGCACACCT.........	22	2	3.50	7	0	7	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................GCAACCAGCACACCATCGATCTTT.........................................................	24	2	3.00	6	0	6	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................TCAAGATCTCCTGTTCAGCG---CC..................................................................................................................................	22	2	3.00	6	0	5	1	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................GCAACCAGCACACCATCGATCTTTT........................................................	25	2	2.00	4	0	4	0	0	0	0	0	0	0	0
.........................................................................................................ACAATCTACAGGACTCTGA---------------------AACACC.....................................................................................................................................................................................................................................................................................................	25	1	2.00	2	0	2	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................CGAGAATCAGTTGAA---CACCCAGCAGG...................................................................................................	26	1	2.00	2	0	2	0	0	0	0	0	0	0	0
.......................................................................................................AAACAATCTACAGGACTCTGA---------------------AACA.......................................................................................................................................................................................................................................................................................................	25	2	2.00	4	0	4	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................CTCCTGTTCAGCG---CCACCGAGAA..........................................................................................................................	23	1	2.00	2	0	2	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................CCAGACTTACCTTGCACACCTT........	22	2	2.00	4	0	4	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................GCCAGACTTACCTTGCACACCTTT.......	24	2	1.50	3	0	3	0	0	0	0	0	0	0	0
.........................................................................................................................................................................TG------------------------------------------------------------CACATACATCGCGCTCGCTTG................................................................................................................................................................................................	23	2	1.50	3	0	3	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................CCAGACTTACCTTGCACACCT.........	21	2	1.50	3	0	3	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................GCTCTATTCAAGATCTCCTGTTCAGC........................................................................................................................................	26	2	1.50	3	0	3	0	0	0	0	0	0	0	0
..................................................................................................ATGTCAAACAATCTACAGGACTCT..................................................................................................................................................................................................................................................................................................................................	24	2	1.50	3	0	3	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................CCAGACTTACCTTGCACACCTTTGC.....	25	2	1.50	3	0	3	0	0	0	0	0	0	0	0
..................................................................................................ATGTCAAACAATCTACAGGACTCTGA---------------------...........................................................................................................................................................................................................................................................................................................	26	2	1.50	3	0	3	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................TCAAGATCTCCTGTTCAGCG---C...................................................................................................................................	21	2	1.50	3	0	3	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................TCTCCTGTTCAGCG---CCACCGAGA...........................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................CCAGCACACCATCGATCTTTTCGAGC...................................................	26	2	1.00	2	0	2	0	0	0	0	0	0	0	0
...............................................................................................................TACAGGACTCTGA---------------------AACACCAGCAG................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................CCGAGAATCAGTTGAA---CACCCAGCA.....................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................CCGAGAATCAGTTGAA---CACCCA........................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................GCCAGACTTACCTTGCACAC...........	20	2	1.00	2	0	2	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................GCTCTATTCAAGATCTCCTGTTCAG.........................................................................................................................................	25	2	1.00	2	0	2	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................CCGAGAATCAGTTGAA---CACCCAGC......................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................TACCTTGCACACCTTTGCGGACT	23	2	1.00	2	0	2	0	0	0	0	0	0	0	0
.........................................................................................................ACAATCTACAGGACTCTGA---------------------AACA.......................................................................................................................................................................................................................................................................................................	23	2	1.00	2	0	2	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................CAAGATCTCCTGTTCAGCG---CC..................................................................................................................................	21	2	1.00	2	0	1	1	0	0	0	0	0	0	0
........................................................................................................................................................................TTG------------------------------------------------------------CACATACATCGCGCTCGCTTG................................................................................................................................................................................................	24	2	1.00	2	0	2	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................TCAGTTGAA---CACCCAGCAG....................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................ATGTCAAACAATCTACAGGACTC...................................................................................................................................................................................................................................................................................................................................	23	2	1.00	2	0	2	0	0	0	0	0	0	0	0
..........................TCAGC---GAGGA---TCC---CAGCAGCAGCA-------------------------G.......................................................................................................................................................................................................................................................................................................................................................................	25	2	1.00	2	0	2	0	0	0	0	0	0	0	0
..................................................................................................................AGGACTCTGA---------------------AACACCAGCAGCAC.............................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..........................................................................................................CAATCTACAGGACTCTGA---------------------AACACCAG...................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................CCGAGAATCAGTTGAA---CACCCAG.......................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................GCTCTATTCAAGATCTCCTGTTCAGCG---C...................................................................................................................................	28	2	1.00	2	0	2	0	0	0	0	0	0	0	0
..................................................................................................................AGGACTCTGA---------------------AACACCAGCAGCA..............................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
..........CTGGCGGCCAGCAACATCAG..............................................................................................................................................................................................................................................................................................................................................................................................................................	20	2	0.50	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................TG------------------------------------------------------------CACATACATCGCGCTCGCT..................................................................................................................................................................................................	21	2	0.50	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................AACCAGCACACCATCGATCTTTTCGA.....................................................	26	2	0.50	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................GTCAAACAATCTACAGGACTCTGA---------------------AA.........................................................................................................................................................................................................................................................................................................	26	2	0.50	1	0	1	0	0	0	0	0	0	0	0
..............................C---GAGGA---TCC---CAGCAGCAGCA-------------------------GCGG....................................................................................................................................................................................................................................................................................................................................................................	24	2	0.50	1	0	0	0	0	0	0	0	0	1	0
...........................................................................................................................................................GCACCAGGAGCAGTTG------------------------------------------------------------CACAT................................................................................................................................................................................................................	21	2	0.50	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................AGCTCTATTCAAGATCTCCTG..............................................................................................................................................	21	2	0.50	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................TTGAA---CACCCAGCAGGTGATA---------GCCAGCA..............................................................................	28	2	0.50	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................AGATCTCCTGTTCAGCG---CCACCG..............................................................................................................................	23	2	0.50	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................GCAACCAGCACACCATCGATCTT..........................................................	23	2	0.50	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................TG------------------------------------------------------------CACATACATCGCGCTCGCTTGC...............................................................................................................................................................................................	24	2	0.50	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................TGTCAAACAATCTACAGGACTCTG.................................................................................................................................................................................................................................................................................................................................	24	2	0.50	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................GTTGAA---CACCCAGCAGGTGATA---------GC...................................................................................	24	2	0.50	1	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................TTTTCGAGCAGGCCTTGAAC........................................	20	2	0.50	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................TCTTTTCGAGCAGGCCTTGAACA.......................................	23	2	0.50	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................GTTG------------------------------------------------------------CACATACATCGCGCTCGCT..................................................................................................................................................................................................	23	2	0.50	1	0	1	0	0	0	0	0	0	0	0
..........................TCAGC---GAGGA---TCC---CAGCAGCAGC..................................................................................................................................................................................................................................................................................................................................................................................................	23	2	0.50	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................AAACAATCTACAGGACTCTGA---------------------AA.........................................................................................................................................................................................................................................................................................................	23	2	0.50	1	0	1	0	0	0	0	0	0	0	0
................................................................................................TCATGTCAAACAATCTACAGGACT....................................................................................................................................................................................................................................................................................................................................	24	2	0.50	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................CATCGCGCTCGCTTGCC---------TC---CT..............................................................................................................................................................................	21	2	0.50	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................AACAATCTACAGGACTCTG.................................................................................................................................................................................................................................................................................................................................	19	2	0.50	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................TCCTGTTCAGCG---CCACCGAG............................................................................................................................	20	2	0.50	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................TCTTTTCGAGCAGGCCTTGAACGA......................................	24	2	0.50	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................GAGCAAATCATGTCAAACAATC.............................................................................................................................................................................................................................................................................................................................................	22	2	0.50	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................GCACACCATCGATCTTTTCGAGCAG.................................................	25	2	0.50	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................AGCTCTATTCAAGATCTCCTGTTCAGC........................................................................................................................................	27	2	0.50	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................TGATA---------GCCAGCAACCAGCACACCATC................................................................	26	2	0.50	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................ATCGATCTTTTCGAGCAGGCCTTG...........................................	24	2	0.50	1	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................TCAAGATCTCCTGTTCAGCG---CCAC................................................................................................................................	24	2	0.50	1	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................CAGCACACCATCGATCTTTTCGAG....................................................	24	2	0.50	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................ATCGATCTTTTCGAGCAGGCCT.............................................	22	2	0.50	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................CTATTCAAGATCTCCTGTTC...........................................................................................................................................	20	2	0.50	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................GCCAGACTTACCTTGCACACC..........	21	2	0.50	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................TCGAGCAGGCCTTGAACGATTTCC.................................	24	2	0.50	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................TTG------------------------------------------------------------CACATACATCGCGCTCGCTTGCC---------.....................................................................................................................................................................................	26	2	0.50	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................CCAGACTTACCTTGCACACCTTTG......	24	2	0.50	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................TG------------------------------------------------------------CACATACATCGCGCTCGCTTGCC---------.....................................................................................................................................................................................	25	2	0.50	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................CTCTATTCAAGATCTCCTGTTCAGCG---C...................................................................................................................................	27	2	0.50	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................ACAATCTACAGGACTCTGA---------------------AAC........................................................................................................................................................................................................................................................................................................	22	2	0.50	1	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................CC---------TC---CTCAC---ACTCCAGCTCTATTCA........................................................................................................................................................	25	2	0.50	1	0	1	0	0	0	0	0	0	0	0
..........................TCAGC---GAGGA---TCC---CAGCAGCA....................................................................................................................................................................................................................................................................................................................................................................................................	21	2	0.50	1	0	1	0	0	0	0	0	0	0	0
..........................TCAGC---GAGGA---TCC---CAGCAGCAGCA-------------------------........................................................................................................................................................................................................................................................................................................................................................................	24	2	0.50	1	0	1	0	0	0	0	0	0	0	0
................................................................................................TCATGTCAAACAATCTACAGGAC.....................................................................................................................................................................................................................................................................................................................................	23	2	0.50	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................AAACAATCTACAGGACTCTGA---------------------AAC........................................................................................................................................................................................................................................................................................................	24	2	0.50	1	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................TCAAGATCTCCTGTTCAGCG---CCA.................................................................................................................................	23	2	0.50	1	0	1	0	0	0	0	0	0	0	0
....................................GGA---TCC---CAGCAGCAGCA-------------------------GCGGTG..................................................................................................................................................................................................................................................................................................................................................................	23	2	0.50	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................TGTCAAACAATCTACAGGACTCTGA---------------------AA.........................................................................................................................................................................................................................................................................................................	27	2	0.50	1	0	0	0	1	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................AGGTGATA---------GCCAGCAACCAG.........................................................................	20	2	0.50	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................ACACCATCGATCTTTTCGAGCAGG................................................	24	2	0.50	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................CTATTCAAGATCTCCTGTTCAGCG---CC..................................................................................................................................	26	2	0.50	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................GCAACCAGCACACCATCGATCTTTTCG......................................................	27	2	0.50	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................GTCAAACAATCTACAGGACTCTG.................................................................................................................................................................................................................................................................................................................................	23	2	0.50	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................GCAACCAGCACACCATCGATC............................................................	21	2	0.50	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................CAGGCCTTGAACGATTTCCAAGCCAGACT.......................	29	2	0.50	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................TTACCTTGCACACCTTTGCGGA..	22	2	0.50	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................TCCTGTTCAGCG---CCACCGA.............................................................................................................................	19	2	0.50	1	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................GAACGATTTCCAAGCCAGACT.......................	21	2	0.50	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................CAAGATCTCCTGTTCAGCG---C...................................................................................................................................	20	2	0.50	1	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................TCAAGATCTCCTGTTCAGCG---T...................................................................................................................................	21	2	0.50	1	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................TTTTCGAGCAGGCCTTGAACGA......................................	22	2	0.50	1	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................GCTCTATTCAAGATCTCCTGTTC...........................................................................................................................................	23	2	0.50	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................ATTCAAGATCTCCTGTTCAGCG---CCAC................................................................................................................................	26	2	0.50	1	0	1	0	0	0	0	0	0	0	0
..........................TCAGC---GAGGA---TCC---CAGCAGCAG...................................................................................................................................................................................................................................................................................................................................................................................................	22	2	0.50	1	0	1	0	0	0	0	0	0	0	0
.....................................GA---TCC---CAGCAGCAGCA-------------------------GCGG....................................................................................................................................................................................................................................................................................................................................................................	20	2	0.50	1	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................CACCAGGAGCAGTTG------------------------------------------------------------CACAT................................................................................................................................................................................................................	20	2	0.50	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................TTG------------------------------------------------------------CACATACATCGCGCTCGCTTGC...............................................................................................................................................................................................	25	2	0.50	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................CGAGCAGGCCTTGAACGATTTC..................................	22	2	0.50	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................CAGGAGCAGTTG------------------------------------------------------------CACATACATCGCG........................................................................................................................................................................................................	25	2	0.50	1	0	1	0	0	0	0	0	0	0	0
..................................................................................................ATGTCAAACAATCTACAGGACTCTGA---------------------AA.........................................................................................................................................................................................................................................................................................................	28	2	0.50	1	0	1	0	0	0	0	0	0	0	0

droPer2

GACGCGGGGACTGGCGGCCAGCAACATCAGC---GAGGA---TGC---CAGCAGCAGCA-------------------------GCGGTGAGCAAATCATGTCAAACAATCTACAGGACTCTGA---------------------AACAGCAGCAGCACCAGGAGCAGTTG------------------------------------------------------------CACATACATCGCGCTCGCTTGCC---------TC---CTCAC---ACTCCAGCTCTATTCAAGATCTCCTGTTCAGCG---CCACCGAGGATCTGTTGAA---CACCCAGCAGGTGATA---------GCCAGCAACCAGCACACCATCGATCTTTTCGAGCAGGCCTTGAACGATTTCCAAGCCAGACTTACCTTGCACACCTTTGCGGACT	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
.................................................................................................CATGTCAAACAATCTACA.........................................................................................................................................................................................................................................................................................................................................	18	1	2.00	2	2	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................ATTCAAGATCTCCTGTTCAGCG---CC..................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0
......................................................................................................................................................................................................................................................CGCTTGCC---------TC---CTCAC---ACTCCA..................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0

droWil2

TACACGTGGCTTGACCTCCAGCAATATAAGT---GATGA---TCCTGCTGCCACTATAAGCGGTGAGCAACAACAACA------------------ACAACTACAACAACT--------------------------------------------------AGAGCAGGTGAACAA-----------------------------------------------------------TCCAAATCAATCCTCTGCCTCTATAGCCTC---CTCTTCGTCGCCACATTCCATGCAAGATCTCATGTATATGGTATCAACTGAAGATCTTTTGGATACCACACAACAGGTGATA---------GCAACCAATCAGCATACCATAGATCTCTTCGAGCAGGCCTTGAATGATTTTCAAGC---ACTAACCATGCGACAATATGTGGACT	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
..........................................................................AACA------------------ACAACTACAACAACT--------------------------------------------------AGAGC......................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	1
......................................................................CAACAACA------------------ACAACTACAACAACT--------------------------------------------------A..........................................................................................................................................................................................................................................................................................	24	2	0.50	1	0	1	0	0	0

droVir3

GACCCGTGGCCTGGCCGCCAGCAACATCAGT---GACAG---CGC---CAATGATCTGA-------------------------GCGGTGAGCAAACCTACTCCA---ATCCACAAACATCCAA---------------------CACAACAGGTGCA---------------GAACCGCAGACGCAGGGTACTAGTACGGGTATGGGT---------------GCTATTGC---TGCTGCCCGTTCGCTTGCC---------TC---CTCGC---ACTCGAATTCCATACAGGATCTCATGCTCAGCG---CCACTGAGGATTTGCTGGACACCACACAACAGGTCATT---------GAGACCAATCAACATACCATAGATCTCTTCGAGCAGGCCTTGAACGATTTCCAGGC---GCTCACCCTGTGCAACTTTGTCGACT	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
.....................................................................................................................CATCCAA---------------------CACAACAGGTGCA---------------GA.............................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................GGGTACTAGTACGGGTATG..............................................................................................................................................................................................................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................CACAACAGGTGCA---------------GAACCGCA.......................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................ACAACAGGTGCA---------------GAACCGCAGA.....................................................................................................................................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................TGCTGGACACCACACAACAGGT..................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................GCG---CCACTGAGGATTTGCTGGACACCACACAACAGGTCA................................................................................................	39	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
............................AGT---GACAG---CGC---CAATGATCTGA-------------------------GCGGT...................................................................................................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................TGCA---------------GAACCGCAGACGCAGGGTACTA.........................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

GACGCGCGGCCTGGCCGCCAGCAACATCAGC---GACAG---CGT---CAACGACCTAA-------------------------GCGGTGAGCAAATCTACTCCA---ATCCACACACAGCCAA---------------------CACAGCAGGTGCAACAGG------TGATGAGCAGCAGTC---------AGGTGCGGGTGTGGGTCTGGGTCTGGGCTTGGGTGTTGC---TGCCACGCGTTCGCTTGCC---------TC---CTCGC---ACTCGAATTCCATACAGGATCTCATGCGCAGCG---CCACAGAGGATCTGCTGGACACCACGCAACAGGTGATC---------GAGACCAATCAACATACCATAGATCTCTTCGAGCAGGCCTTGAACGACTTCCAGGC---GCTCACGCTGCGCAACTTTGCCGATT	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
.............................................................................................................................................................................................................................................................................................................................................................................................................CTTGAACGACTTCCAGGC---GCTCACG...................	25	1	1.00	1	0	0	0	0	0	1
...........................................................................................................................................................................................................................................TGCCACGCGTTCGCTTGCC---------TC---CT..............................................................................................................................................................................	23	1	1.00	1	0	0	0	0	1	0
...................................................................................................................................................................................................................GGGTCTGGGCTTGGGTGTTGC---TG...............................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	1

droGri2

GACTCGTGGATTGGCGGCCAGCAATATTAGC---AGTGACAGCGC---CAGTGACTTGA-------------------------GTGGTGAGCTAATCT---ACACAAATCCACAATCCTCCAATCCAAACCAGACATCATCATCATCATCAGCAGCAGCAGCAGCGGT------------------------------------------------------------------TGTTGTTGGTTCGCTTGCC---------TCAAACTCGC---ACTCGAATTCCATACAGGATCTGATGCTGAGCG---CAACGGAGGATTTGCTGGACACCACACAGCAGGTGATC---------GAGACCAATCAGCATTCCATAGATCTCTTCGAGCAGGCCTTGAACGATTTCCAGGC---GCTTACCATGCTCAATTTTGTCGATT	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
.............................................................................................................................................................................................................................................................................................................................................CCACACAGCAGGTGATC---------GAGACCA..............................................................................	24	1	1.00	1	1	0
.....................................................................................................................................................TCAGCAGCAGCAGCAGCG.....................................................................................................................................................................................................................................................................................	18	20	0.10	2	2	0
.....................................................................................................................................................TCAGCAGCAGCAGCAGCGG....................................................................................................................................................................................................................................................................................	19	20	0.05	1	1	0

der_860

scaffold_4784:19431049-19431199 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-13.1	-13.1	-13.1