ID:

der_823

 Coordinate:

scaffold_4784:15167973-15168123 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-13.3 -13.0 -12.8

Flybase annnotation

CDS [Dere\GG15724-cds]; exon [dere_GLEANR_15774:2]; intron [Dere\GG15724-in]

Repeatable elements

NameClassFamilyStrand
(CAG)nSimple_repeatSimple_repeat+
TART_DVLINEJockey+
mature
  1. scaffold_4690:2857322-2857341 +
  2. scaffold_4690:6760762-6760781 +
  3. scaffold_4690:7504689-7504708 +
  4. scaffold_4690:7979239-7979258 +
  5. scaffold_4690:10160555-10160574 +
  6. scaffold_4690:16473762-16473781 +
  7. scaffold_4690:16473819-16473838 +
  8. scaffold_4690:18243285-18243304 +
  9. scaffold_4784:1922259-1922278 +
  10. scaffold_4784:7285382-7285401 +
  11. scaffold_4784:7285919-7285938 +
  12. scaffold_4784:9686577-9686596 +
  13. scaffold_4784:12317543-12317562 +
  14. scaffold_4820:1286125-1286144 +
  15. scaffold_4845:7497269-7497288 +
  16. scaffold_4845:16752398-16752417 +
  17. scaffold_4845:16857229-16857248 +
  18. scaffold_4845:18633059-18633078 +
  19. scaffold_4929:634314-634333 +
  20. scaffold_4929:17757961-17757980 +
  21. scaffold_4690:2995859-2995878 +
  22. scaffold_4690:3175994-3176013 +
  23. der_373  scaffold_4690:4615376-4615395 +
  24. scaffold_4690:5217567-5217586 +
  25. scaffold_4690:5898699-5898718 +
  26. scaffold_4690:9343132-9343151 +
  27. scaffold_4690:13709641-13709660 +
  28. scaffold_4690:18359364-18359383 +
  29. scaffold_4770:8873268-8873287 +
  30. der_823  scaffold_4784:15167991-15168010 +
  31. scaffold_4820:3624799-3624818 +
  32. scaffold_4820:8311615-8311634 +
  33. scaffold_4845:7936208-7936227 +
  34. scaffold_4845:12196439-12196458 +
  35. scaffold_4845:12291526-12291545 +
  36. scaffold_4845:18902029-18902048 +
  37. scaffold_4929:5263935-5263954 +
  38. scaffold_4929:6779775-6779794 +
  39. scaffold_4929:16287510-16287529 +
  40. scaffold_4929:19309295-19309314 +
star

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
AGCAGCACCACAGCAACCACGGCAACCACCACCAGCAGCAGCAGCAACAGCAACAACAGCAGCAGCAACACCAGCAGCAGCAGCAGCAAGAACACTACCAGCAGCAACAGCAACAGAATATCGCCAACAATGCCAACCAATTCAACTCCTCGTCCTACTCGTATATATACAATTTCGATTCACAGTATATATTCCCGACAGGCTACCAGGACACCACCTCCTCCCACTCGCAGCAGAGCGGAGGAGGCGGT
**************************************************........((.((.((.......)).)).))...................(((......((...........))......))).........................(((.((((((((..............))))))))...)))...************************************************** 		Read size # Mismatch Hit Count Total Norm Total M055
female body
 V040
embryo
 V108
head
 M057
embryo
 V060
head
 V107
male body
....................................................................................................................................................................................................................................CGCAGCAGAGCGGAGGAGGCGGG 23 1 1 1.00 1 1 0 0 0 0 0
...........................................................................................................................................................................................................TACCAGGACACCACCTCCT............................. 19 0 1 1.00 1 1 0 0 0 0 0
...................................................................................CAGCAAAAACACTACCAACA.................................................................................................................................................... 20 2 8 0.13 1 0 1 0 0 0 0
...........................................GCAACAGCAACAACAGCAGC............................................................................................................................................................................................ 20 0 20 0.10 2 1 0 0 1 0 0
........................................GCAGCAACAGCAACAACAGCAGCA........................................................................................................................................................................................... 24 0 11 0.09 1 0 0 0 1 0 0
.............................CACCAGCAGCAGCAGCAACAG......................................................................................................................................................................................................... 21 0 13 0.08 1 0 1 0 0 0 0
........................ACCACCACCAGCAGCAGCAGC.............................................................................................................................................................................................................. 21 0 17 0.06 1 0 0 1 0 0 0
....................................AGCAGCAGCAACAGCAACAA................................................................................................................................................................................................... 20 0 20 0.05 1 0 1 0 0 0 0
................................................AGCAACAACAGCAGCAGCA........................................................................................................................................................................................ 19 0 20 0.05 1 1 0 0 0 0 0
...............................CCAGCAGCAGCAGCAACAGC........................................................................................................................................................................................................ 20 0 20 0.05 1 0 0 1 0 0 0
.................................................GCAACAACAGCAGCAGCAACA..................................................................................................................................................................................... 21 0 20 0.05 1 0 0 0 0 0 1
....................................................................CACCAGCAGCAGCAGCAGCA................................................................................................................................................................... 20 0 20 0.05 1 0 0 1 0 0 0
..................................................................AACACCAGCAGCAGCAGCA...................................................................................................................................................................... 19 0 20 0.05 1 1 0 0 0 0 0
..........................................AGCAACAGCAACAACAGCAG............................................................................................................................................................................................. 20 0 20 0.05 1 1 0 0 0 0 0
...................................................................ACACCAGCAGCAGCAGCAGC.................................................................................................................................................................... 20 0 20 0.05 1 0 0 0 1 0 0
.............................................AACAGCAACAACAGCAGCAGC......................................................................................................................................................................................... 21 0 20 0.05 1 0 0 0 0 1 0
.............................................AACAGCAACAACAGCAGCAGCA........................................................................................................................................................................................ 22 0 20 0.05 1 0 0 1 0 0 0
..........................CACCACCAGCAGCAGCAGC.............................................................................................................................................................................................................. 19 0 20 0.05 1 1 0 0 0 0 0
..........................................................................................................................................................................ATTTTCGATACACAGTATC.............................................................. 19 3 20 0.05 1 0 1 0 0 0 0

Anti-sense strand reads

TCGTCGTGGTGTCGTTGGTGCCGTTGGTGGTGGTCGTCGTCGTCGTTGTCGTTGTTGTCGTCGTCGTTGTGGTCGTCGTCGTCGTCGTTCTTGTGATGGTCGTCGTTGTCGTTGTCTTATAGCGGTTGTTACGGTTGGTTAAGTTGAGGAGCAGGATGAGCATATATATGTTAAAGCTAAGTGTCATATATAAGGGCTGTCCGATGGTCCTGTGGTGGAGGAGGGTGAGCGTCGTCTCGCCTCCTCCGCCA
**************************************************........((.((.((.......)).)).))...................(((......((...........))......))).........................(((.((((((((..............))))))))...)))...************************************************** 		Read size # Mismatch Hit Count Total Norm Total V107
male body		 M055
female body
 V108
head
............CGTTCGGGCCGTTGCTGGTG........................................................................................................................................................................................................................... 20 3 6 0.17 1 1 0 0
..............................................................................................................................................TTTGAGGAGCAGCATGAGC.......................................................................................... 19 2 8 0.13 1 0 0 1
....................................................................................TCGTGCTTGTGATGTTCGT.................................................................................................................................................... 19 2 9 0.11 1 0 1 0
....................................................................................................................................GGTTGGTTATGTTGTGGAAC................................................................................................... 20 3 12 0.08 1 1 0 0
............................GGTGGTCGTCGTGGCCGTTGTC......................................................................................................................................................................................................... 22 2 20 0.05 1 0 1 0
.......................................TAGTCGTTGTCGTTATTGCCGTCG............................................................................................................................................................................................ 24 3 20 0.05 1 0 1 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droEre2 scaffold_4784:15167923-15168173 + der_823 AGCAGCACCACAGCA---A--------------------CCACGGCAAC--CACCACCAGCAG---CAGCAGC------AACAG---CAAC---------------------AACAGCAGCAG------CA---------A------------CACCAGCA---------------------GCAGCAGCAGCAAGAACACTAC--------------------------CAGCAG---CAACAGCAACAGAATATCGCC---AACAATGCCAAC------------CAATTCAACTCCTCGTCCTACTCGTATATATACAATTTCGATTCACAGTATATATTCCCGACAGGCTACCAGGACACCACCTCCTCCCACTCGCAGCAGAGCGG------A---GGAGGCGGT
droYak3 3L:15307634-15307884 + dya_803 AGCAGCACCACAGCA---A--------------------CCACGGCAAC--CACCACCAGCAG---CAGCAGC---AGCAACAA---CAAC---------------------AACAGCAGCAG------CA---------A------------CACC---------------------------AGCAGCAGCAAGAACACTAC--------------------------CAGCAGCAACAGCAACAACAGAATATCGCC---AACAATGCCAAT------------CAATTCAACTCCTCGTCCTACTCGTATATATACAATTTCGATTCACAGTATATATTCCCGACAGGCTACCAGGACACCACCTCCTCACACTCGCAGCAGAGCGG------A---GGAGGCGGT
droSec2 scaffold_19:729902-730149 - dse_940 AACAGCACCACAGCA---A--------------------CCACGGCAAC-----CACCAGCAG---CAGCAGC---AACAACAA---CAGC---------------------AGCAGCAGCAG------CA---------A------------CATCA------------------------GCAGCAGCAGCAAGAACACTAC--------------------------CAGCAG---CAACAGCAACAGAATATCGCC---AACAATGCCAAT------------CAATTCAACTCCTCGTCCTACTCGTATATATACAATTTTGATTCACAGTATATATTCCCGACAGGCTACCAGGACACCACCTCCTCACACTCGCAGCAGAGCGG------A---GGAGGCGGT
droSim2 3l:18384353-18384606 - dsi_8293 AGCAGCACCACAGCA---A--------------------CCACGGCAAC--CACCACCAGCAG---CAGCAGC------AACAA---CAGC---------------------AGCAGCAGCAG------CA---ACATCAG------------CAGCA------------------------GCAGCAGCAGCAAGAACACTAC--------------------------CAGCAG---CAACAGCAACAGAATATCGCC---AACAATGCCAAT------------CAATTCAACTCCTCGTCCTACTCGTATATATACAATTTCGATTCACAGTATATATTCCCGACAGGCTACCAGGACACCACCTCCTCGCACTCGCAGCAGAGCGG------A---GGAGGCGGT
dm3 chr3L:18756913-18757169 - AGCAGCACCACAGCA---A----------CCACAGC-AACCACGGCAAC--CACCACCAGCAG---CAGCAGC------AACAA---CAGC---------------------AACAGCAGCAG------CA---------A------------CATCA------------------------GCAGCAGCAGCAAGAACACTAC--------------------------CAGCAG---CAACAGCAACAGAATATCGCC---AACAATGCCAAT------------CAATTCAACTCCTCGTCCTACTCGTATATATACAATTTCGATTCACAGTATATATTCCCGACAGGCTACCAGGACACCACCTCCTCACACTCGCAACAGAGCGG------A---GGAGGCGGT
droEug1 scf7180000409471:731592-731833 + AGCAACACCACAGTAACAG-----------------------------C--CACCACCAGCAG---CAGCAGC---AGCAACAG---CAAC---------------------AACAGCAGCAG------CA---------A------------CACCA------------------------ACAGCAGCAGCAAGAACACTAC--------------------------CAG------CAACAACAACAGAATATTGCC---AACAATGCCAAC------------CAATTCAACTCCTCGTCCTACTCGTATATATACAATTTCGATTCACAGTATATATTTCCGACAGGCTATCAGGACACCACCTCCTCACACTCGCAGCAAAGCGG------C---GGTGGCGGT
droBia1 scf7180000302529:742118-742332 + AGCAGCACCACACCA---C-----------------------------C--CACCACCAGCAG---CAGCAGC------A------------------------------------------------------------C------------CAGCA------------------------GCAGCAGCAGCAGGAGCACTAC--------------------------CAG------CAGCAGCAACAGAATATCGCC---AACAACGCCAAC------------CAATTCAACTCCTCGTCCTACTCGTATATATACAATTTCGATTCACAGTATATATTCCCGACAGGCTACCAGGACACCACCTCCTCCCACTCGCAGCAGAGCGG------A---GGGGGCGGT
droTak1 scf7180000415184:294123-294361 + AGCAACACCACAGCA---G-----------------------------C--CACCACCAGCAA---CAGCAGC------AGCAG---CAAC---------------------AA---CAGCAG------CA---ACATCAG------------CAGCA------------------------GCAGCAGCAACAAGAACACTAC--------------------------CAG------CAGCAACAACAGAATATTGCC---AACAATGCCAAT------------CAATTCAACTCCTCGTCCTACTCGTATATATACAATTTCGATTCACAGTATATATTTCCGACAGGCTATCAGGACACCACCTCCTCGCACTCGCAGCAAAGCGG------A---GGAGGCGGT
droEle1 scf7180000490993:1675973-1676226 - AGCAACACCACACCA---ATCACCACCAGCAACC--G--------------CAAC---AGCAG---CAACAGC------AACAG---CAGC---------------------AACACCAGCAGCAACAACA---------A------------CAGCA------------------------GCAGCAGCAACAAGATCACTAC--------------------------CAG------CAGCAACAACAGAATATTGCC---AACAATGCCAAT------------CAATTCAACTCCTCGTCCTACTCGTATATATACAATTTCGATTCACAGTATATATTTCCGACAGGCTATCAGGACACCACCTCCTCGCATTCACAGCAAAGCGG------C---GGAGGCGGT
droRho1 scf7180000779212:84563-84831 + AGCAACACCACAACACCAC-----------------------------T--CACCACCAGCAA---CAGCAGCAGCAGCAACAA---CAACAGCAGCAGCAGC---------AACACCAGCAACAACAACA---ACAGCAG------------CAGCA------------------------ACAGCAGCAACAAGAACACTAC--------------------------CAA------CAGCAACAACAGAATATTGCC---AACAATGCCAAT------------CCATTCAACTCCTCGTCCTACTCGTATATATACAATTTCGATTCACAGTATATATTTCCGACAGGCTACCAGGACACCACCTCCTCGCATTCGCAGCAAAGTGG------C---GGAGGCGGT
droFic1 scf7180000453824:120209-120444 - AGCAGCACCACAGCA---A-----------------------------C--CACCACCAGCAG---CAGCAAC------AGCAG---CAG---------------------------CAGCAG------CA---ACACCAG------------CAACA------------------------GCAGCAGCAGCAAGAGCACTAC--------------------------CAG------CAGCAACAACAGAATATTGCC---AACAATGCCAAT------------CAATTCAACTCCTCGTCCTACTCGTATATATACAATTTCGATTCACAGTATATATTTCCGACAGGCTATCAGGACACCACCTCCTCGCACTCGCAGCAAAGTGG------A---GGGGGCGGT
droKik1 scf7180000302248:212232-212491 + AGCAACACCACAATG---C-----------------------------C--CACCACCAGCAA---CAACAGC------AGCAGCAGCAAC------------------------AACAGCAG------CA---ACACCAGCAGCAG------CAGCA---ACAACAGGAGCATTACCAACAACA------------------A--------------------------CAG------CAGCAACAACAGAATATAGCC---AACAATGCCAAT------------CAATTCAACGCGTCATCCTACTCGTATATATACAATTTCGATTCACAGTATATATTTCCGACAGGCTATCAGGACACCACCTCCTCGCATTCCCAACAAAGTGCCGGCGGCGGCGGAGGTGGC
droAna3 scaffold_13337:18671419-18671660 + dan_2716 CGCACCACCAC------------------CAACA--GCA--------ACAACAACACCAGCAGACGCAGCAGC---------------AAC------------AACACCAACAACAGCAGCAG------CA---------A------------CAGCA------------------------ACAACAGCAACAAGATCACTAC--------------------------CA---------ACAACAACAGAATATTGTC---AACAATGCCAAT------------CAATTCAATGCCTCGTCCTACTCGTACATATACAATTTCGACTCACAGTACATATTCCCGACAGGCTACCAGGACACCACCTCCTCCCACTCCCAGCAGAGCGG------------GGGCGGT
droBip1 scf7180000396741:1862909-1863153 + CGCACCACCA------------------ACAACA--GCA--------A------CACCAGCAG---CAGCAGC------AACAC---CAGC---AAC---------------AGCAGCAACAA------CA---ACACCAG------------CAACA------------------------ACAACAGCAACAAGATCACTAC--------------------------CAACAA---CAACAACAACAGAATATTGCC---AACAACGCCAAC------------CAATTCAACTCCTCATCCTACTCGTACATATACAATTTCGACTCACAGTACATATTCCCGACAGGCTACCTGGACACCACCTCCTCGCACTCGCAGCAGAGCGG------------GGGCGGT
dp5 XR_group6:4206907-4207157 + dps_3032 AGCAACAGCA------------------GCAGCA--GCACCACAGCACG--CACCACCAGCAG---CAGCAGC------AGCAG---CAGC---------------------AGTCCGACCAG------CA---------G------GGGCACTACCAACA---------------------GCAGCAGCAGC---------AG--------------------------CAG------CAGCAACAACAGAATATTGCC---AACAACGCCAAC------------CAATTCAACTCCTCGTCCTACTCGTATATATACAACTTCGATTCACAGTATATATTCCCGACAGGCTACCAGGACACCACCTCCTCCCACTCGCAGCAGAGTGG------CGGTGGGGGCGGC
droPer2 scaffold_9:2497470-2497717 + AGCAACAGCA------------------GCAGCA--GCACCACAGCACG--CACCACCAGCAG---CAGCAGC------AGCAG---CAGT---------------------CCGACCAGCAG------GG---GCA---C------------TACCAACA---------------------GCAGCAGCAGC---------AG--------------------------CAG------CAGCAACAACAGAATATTGCC---AACAACGCCAAC------------CAATTCAACTCCTCGTCCTACTCGTATATATACAACTTCGATTCACAGTATATATTCCCGACAGGCTACCAGGACACCACCTCCTCCCACTCGCAGCAGAGTGG------CGGTGGGGGCGGC
droWil2 scf2_1100000004762:1598380-1598620 - AGGAG------------------------------------------------------GCGG---CGGCGGC---GGCAATAG---TGG-------------------------AGGAGGAG------C----------T------------CATCA------------------------GCAGCAGCAGCAACAACATTACCAGCAACAGAATCTATCAAATAATGCCAATAA---TAACAACAACA--------AC---AACAACAACAAT------------CAATTCACATCCCAATCCTATTCGTATATATACAATTTTGATTCACAGTATATATTCCCAACAGGCTATCAAGATACCACATCCTCACACTCGCAACAAAGCGGCGGTGGT---GGAGGAGGT
droVir3 scaffold_13049:18170788-18171038 + dvi_20427 ATCAGCAGCA------------------GCAACA--ACAACATCACACG--CATCACCAGCAA---CAGCAAC------AACAA---CAAC---------------------AACATTACCAA------CA---------A------------CAACA------------------------ACAGCAGCAGC---------AG--------------------------CAG------CAACAACAACAAAATATTGCCAGCAACAATACGAAT---GCCGCGAACCAATTCAACGCCTCCTCTTACTCGTATATATACAATTTCGATTCACAGTATATATTTCCGACAGGGTATCAGGAAACGAACTCATCTCATTCACAGCAAAGCGG------C---AATGGAGCT
droMoj3 scaffold_6680:23748199-23748446 + G--------------------------------------------CAAT--CATCAGCAGCAG---CATCCAC------AGCAG---CAGC---------------------AACAGCAGCAC------CTTAATGCGCAT------------CATCA------------------------GCAACAGCAACAACAACAGTAT--------------------------CAA------CAGCAACAACAGAATATTGCCAGCAACAATGCGAATAGTGCAGCGAACCAATTCAATGCCTCCTCTTATTCGTATATATACAATTTCGATTCACAGTATATATTTCCGACAGGCTATCAGGAAACCAATTCGTCTCATTCGCAGCAAAGCGG------T---AACGGCACC
droGri2 scaffold_15110:24222303-24222538 + dgr_348 AGCAGCAGCA------------------GCAACA--CTCACATCACACA--CATCACCAGCAG---CAGCAGC---AGCA---------AC---------------------AACAGCAGCAG---------------------------------------------------------------------------CATTAC--------------------------CAACAG---CAACAACAACAAAATATTGCC---AACAATGCGAATGCAGCGGCGAACCAATTCAATGCTTCCTCCTATTCGTATATATACAATTTCGATTCACAGTACATATTCCCGACAGGCTATCAGGAAACGAACTCATCCCATTCGCAGCAAAGTGC------A---AATGGAGCT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droEre2
AGCAGCACCACAGCA---A--------------------CCACGGCAAC--CACCACCAGCAG---CAGCAGC------AACAG---CAAC---------------------AACAGCAGCAG------CA---------A------------CACCAGCA---------------------GCAGCAGCAGCAAGAACACTAC--------------------------CAGCAG---CAACAGCAACAGAATATCGCC---AACAATGCCAAC------------CAATTCAACTCCTCGTCCTACTCGTATATATACAATTTCGATTCACAGTATATATTCCCGACAGGCTACCAGGACACCACCTCCTCCCACTCGCAGCAGAGCGG------A---GGAGGCGGTSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
..........................................................................................................................................................................................................................................................................................................................................................................................CGCAGCAGAGCGG------A---GGAGGCGGG2311.0011000000
.................................................................................................................................................................................................................................................................................................................................................................TACCAGGACACCACCTCCT......................................1911.0011000000
.......................................................................GC------AACAG---CAAC---------------------AACAGCAGC.................................................................................................................................................................................................................................................................................................20200.1021100000
....................................................................GCAGC------AACAG---CAAC---------------------AACAGCAGCA................................................................................................................................................................................................................................................................................................24110.0910100000
......................................................CACCAGCAG---CAGCAGC------AACAG---...................................................................................................................................................................................................................................................................................................................................21130.0810001000
...............................................AC--CACCACCAGCAG---CAGCAGC------...........................................................................................................................................................................................................................................................................................................................................21170.0610000010
.............................................................AG---CAGCAGC------AACAG---CAAC---------------------AA........................................................................................................................................................................................................................................................................................................20200.0510001000
..................................................................................AG---CAAC---------------------AACAGCAGCAG------CA---------..............................................................................................................................................................................................................................................................................19200.0511000000
........................................................CCAGCAG---CAGCAGC------AACAG---C..................................................................................................................................................................................................................................................................................................................................20200.0510000010
...................................................................................G---CAAC---------------------AACAGCAGCAG------CA---------A------------CA...............................................................................................................................................................................................................................................................21200.0510000100
.........................................................................................................................................................CACCAGCA---------------------GCAGCAGCAGCA........................................................................................................................................................................................................................20200.0510000010
..................................................................................................................................A---------A------------CACCAGCA---------------------GCAGCAGCA...........................................................................................................................................................................................................................19200.0511000000
......................................................................AGC------AACAG---CAAC---------------------AACAGCAG..................................................................................................................................................................................................................................................................................................20200.0511000000
............................................................................................................................................A------------CACCAGCA---------------------GCAGCAGCAGC.........................................................................................................................................................................................................................20200.0510100000
...............................................................................AACAG---CAAC---------------------AACAGCAGCAG------C........................................................................................................................................................................................................................................................................................21200.0510010000
...............................................................................AACAG---CAAC---------------------AACAGCAGCAG------CA---------..............................................................................................................................................................................................................................................................................22200.0510000010
...................................................CACCACCAGCAG---CAGCAGC------...........................................................................................................................................................................................................................................................................................................................................19200.0511000000
droYak3
AGCAGCACCACAGCA---A--------------------CCACGGCAAC--CACCACCAGCAG---CAGCAGC---AGCAACAA---CAAC---------------------AACAGCAGCAG------CA---------A------------CACC---------------------------AGCAGCAGCAAGAACACTAC--------------------------CAGCAGCAACAGCAACAACAGAATATCGCC---AACAATGCCAAT------------CAATTCAACTCCTCGTCCTACTCGTATATATACAATTTCGATTCACAGTATATATTCCCGACAGGCTACCAGGACACCACCTCCTCACACTCGCAGCAGAGCGG------A---GGAGGCGGTSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
....................................................................................................................................................................................................................................................................................................................................................................................CACACTCGCAGCAGAGCGG------A---GG.......2211.00101000000000
............................................................................................................................................................C---------------------------AGCAGCAGCAAGAACACTAC--------------------------C...................................................................................................................................................................................2211.00100100000000
..................................................................................................................................................................................................................................................................................................TTCAACTCCTCGTCCTACTC....................................................................................................2011.00100100000000
....................................................................................................................................................................................................................................................................................................................................................................................CACACTCGCAGCAGAGCGG------A---GGAGGC...2611.00100000010000
............................................................................................................................................................................................GCAGCAAGAACACTAC--------------------------CAGCAGCAAC..........................................................................................................................................................................2611.00100100000000
................................................................................................................................................................................................................................................................................................................................................................................TCCTCACACTCGCAGCAGAGCGG------A---G........2511.00101000000000
..................................................................................................................................................................................................................................................................................................................................................................................CTCACACTCGCAGCAGAGCGG------A---GGA......2511.00101000000000
......................................................................................................................................................................................................................................................................................................................................................................................CACTCGCAGCAGAGCGG------A---GGAGGC...2411.00100100000000
...................................................................................................................AGCAGCAG------CA---------A------------CACC---------------------------AGCAGC............................................................................................................................................................................................................................21110.09100100000000
.......................................................................GC---AGCAACAA---CAAC---------------------AACAGCAGCAG------CA---------..............................................................................................................................................................................................................................................................................27120.08101000000000
..........................................................................................C---------------------AACAGCAGCAG------CA---------A------------CACC---------------------------..................................................................................................................................................................................................................................19190.05101000000000
...............................................................................AACAA---CAAC---------------------AACAGCAGCAG------CA---------A------------C................................................................................................................................................................................................................................................................24200.05100000010000
............................................................................AGCAACAA---CAAC---------------------AACAGCAGC.................................................................................................................................................................................................................................................................................................21200.05101000000000
.......................................................................................CAAC---------------------AACAGCAGCAG------CA---------A------------C................................................................................................................................................................................................................................................................19200.05100100000000
.................................................................................CAA---CAAC---------------------AACAGCAGCAG------CA---------..............................................................................................................................................................................................................................................................................20200.05100001000000
...................................................CACCACCAGCAG---CAGCAGC---A.............................................................................................................................................................................................................................................................................................................................................20200.05101000000000
...........................................................GCAG---CAGCAGC---AGCAACAA---CA.................................................................................................................................................................................................................................................................................................................................21200.05101000000000
...........................................................GCAG---CAGCAGC---AGCAACAA---CAAC---------------------AA........................................................................................................................................................................................................................................................................................................25200.05101000000000
.......................................................................................CAAC---------------------AACAGCAGCAG------CA---------A------------CA...............................................................................................................................................................................................................................................................20200.05100000010000
droSec2
AACAGCACCACAGCA---A--------------------CCACGGCAAC-----CACCAGCAG---CAGCAGC---AACAACAA---CAGC---------------------AGCAGCAGCAG------CA---------A------------CATCA------------------------GCAGCAGCAGCAAGAACACTAC--------------------------CAGCAG---CAACAGCAACAGAATATCGCC---AACAATGCCAAT------------CAATTCAACTCCTCGTCCTACTCGTATATATACAATTTTGATTCACAGTATATATTCCCGACAGGCTACCAGGACACCACCTCCTCACACTCGCAGCAGAGCGG------A---GGAGGCGGTSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.........................................................................................................................................................................................................................................................................................................................................................................................TCGCAGCAGAGCGG------A---GGAGGC...2111.0010010
...................................................................................................................................................................................................................................................................................................................................TTTGATTCACAGTATATATT...................................................................2011.0011000
..................A--------------------CCACGGCAAC-----CACCAGCAG---C.......................................................................................................................................................................................................................................................................................................................................................2111.0010010
.........................................................................................................................................................................................................................................................................................................................................................................................TCGCAGCAGAGCGG------A---GGAGGCGGT2411.0010010
.................................................................................................................................................................................................................................................................................................................................................................................CCTCACACTCGCAGCAGAGCG....................2111.0010010
............................................................................................................................................................................................................................................................................................................................................................................................CAGCAGAGCGG------A---GGAGGC...1821.0020011
.........................................................CAGCAG---CAGCAGC---AACAAC........................................................................................................................................................................................................................................................................................................................................19200.0510001
................................................................................ACAA---CAGC---------------------AGCAGCAGCAG------CA---------..............................................................................................................................................................................................................................................................................21200.0510010
droSim2
AGCAGCACCACAGCA---A--------------------CCACGGCAAC--CACCACCAGCAG---CAGCAGC------AACAA---CAGC---------------------AGCAGCAGCAG------CA---ACATCAG------------CAGCA------------------------GCAGCAGCAGCAAGAACACTAC--------------------------CAGCAG---CAACAGCAACAGAATATCGCC---AACAATGCCAAT------------CAATTCAACTCCTCGTCCTACTCGTATATATACAATTTCGATTCACAGTATATATTCCCGACAGGCTACCAGGACACCACCTCCTCGCACTCGCAGCAGAGCGG------A---GGAGGCGGTSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
......................................................................................................................................................................................................................................................AACAGAATATCGCC---AACAATG............................................................................................................................................2112.00200000000000002000
................................................................................................................................................................................................................................................................................AAT------------CAATTCAACTCCTCGTCCTACTCGTA.................................................................................................2912.00200200000000000000
..........................................................................................................................................................................................CAGCAGCAAGAACACTAC--------------------------CAG.................................................................................................................................................................................2121.00200000000000002000
................................................................................................................................................................................................................................................................................................AATTCAACTCCTCGTCCTACTCG...................................................................................................2311.00100100000000000000
.........ACAGCA---A--------------------CCACGGCAAC--CACC...................................................................................................................................................................................................................................................................................................................................................................2111.00100000000000001000
.....................................................................................................................................................................................................................................................................................................................................................................................GCACTCGCAGCAGAGCGG------A---GGA......2211.00100000001000000000
........................................................................................................................................................................................................................................................................................................................................................................................CTCGCAGCAGAGCGG------A---GGAGGC...2211.00100000000000100000
............................................................................................................................................................................................................................................................................TGCCAAT------------CAATTCAACTCCTCGTCC.........................................................................................................2511.00100010000000000000
......................................................................................................................................................................................................................................................................................................................................................TCCCGACAGGCTACCAGGACA...............................................2111.00100100000000000000
..........................................................................................................................................................................................................................................................................................................................................................GACAGGCTACCAGGACACCA............................................2011.00100000000000001000
..................................................................................................................................................................................................................................................................................................................................................................................CTCGCACTCGCAGCAGAGCGG------A---.........2211.00100001000000000000
................................................................................................................................................................................................................................................................................................................................................................................TCCTCGCACTCGCAGCAGAGCGG------A---.........2411.00100000001000000000
..........................................................................................................................................................................................................................................................................AATGCCAAT------------CAATTCAACTCCTC.............................................................................................................2311.00100100000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................CGCAGCAGAGCGG------A---GGAGGCG..2111.00100000000000001000
...................................................................................................................................................................................................................................................................................................TCAACTCCTCGTCCTACTCG...................................................................................................2011.00100100000000000000
...................................................................................................................................................................................................................................................................................................TCAACTCCTCGTCCTACTCGT..................................................................................................2111.00100000000000100000
.......................................................................................................................................................................................................................................................................................................................................................CCCGACAGGCTACCAGGACAC..............................................2111.00100000000000001000
....................................................................................................................................................................................................................................................................................................................................................................................CGCACTCGCAGCAGAGCGG------A---.........2011.00100010000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................AGCAGAGCGG------A---GGAGGCGG.1920.50100000000000001000
...........................................................................................................................................................................................AGCAGCAAGAACACTAC--------------------------CAGC................................................................................................................................................................................2120.50101000000000000000
..................................................................................AA---CAGC---------------------AGCAGCAGCAG------CA---ACATC...............................................................................................................................................................................................................................................................................24150.07100000000001000000
........................................................................C------AACAA---CAGC---------------------AGCAGCAGCAG------C........................................................................................................................................................................................................................................................................................22200.05100000000000100000
..........................................................................................................................G------CA---ACATCAG------------CAGCA------------------------GCA.................................................................................................................................................................................................................................18200.05100000000001000000
dm3
AGCAGCACCACAGCA---A----------CCACAGC-AACCACGGCAAC--CACCACCAGCAG---CAGCAGC------AACAA---CAGC---------------------AACAGCAGCAG------CA---------A------------CATCA------------------------GCAGCAGCAGCAAGAACACTAC--------------------------CAGCAG---CAACAGCAACAGAATATCGCC---AACAATGCCAAT------------CAATTCAACTCCTCGTCCTACTCGTATATATACAATTTCGATTCACAGTATATATTCCCGACAGGCTACCAGGACACCACCTCCTCACACTCGCAACAGAGCGG------A---GGAGGCGGTSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
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..................................................................................................................................................................................................................................................................................T------------CAATTCAACTCCTCGTCCTACTCG...................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
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................................................................................................................AACAGCAGCAG------CA---------A------------CATCA------------------------GCAGCA..............................................................................................................................................................................................................................2570.2920000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000
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..........................................................................................C---------------------AACAGCAGCAG------CA---------A------------CATCA------------------------GCAGCAGC............................................................................................................................................................................................................................2870.1410000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..........................................................................................C---------------------AACAGCAGCAG------CA---------A------------CATCA------------------------GCAGCA..............................................................................................................................................................................................................................2670.1410000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
..................................................................................AA---CAGC---------------------AACAGCAGCAG------CA---------A------------CATC.............................................................................................................................................................................................................................................................2470.1410000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................GCAG---CAGCAGC------AACAA---CAGC---------------------AACAGC....................................................................................................................................................................................................................................................................................................2680.1310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000
.......................................................................GC------AACAA---CAGC---------------------AACAGCAGCAG------C........................................................................................................................................................................................................................................................................................23190.1120000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000
..........................................................................................................................G------CA---------A------------CATCA------------------------GCAGCAGCA...........................................................................................................................................................................................................................18200.1020000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000
......................................................CACCAGCAG---CAGCAGC------AACAA---CA.................................................................................................................................................................................................................................................................................................................................23100.1010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................AGCAGC------AACAA---CAGC---------------------AACAGC....................................................................................................................................................................................................................................................................................................21200.1020000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.......................................................................................................................GCAG------CA---------A------------CATCA------------------------GCAGCAGCAGC.........................................................................................................................................................................................................................23200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000
.................................................................................................................................CA---------A------------CATCA------------------------GCAGCAGCAGCA........................................................................................................................................................................................................................20200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................CAGC---------------------AACAGCAGCAG------CA---------A------------CATCA------------------------....................................................................................................................................................................................................................................23100.1010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................G------CA---------A------------CATCA------------------------GCAGCAGCAG..........................................................................................................................................................................................................................19200.1020000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................AGC---------------------AACAGCAGCAG------CA---------A------------CA...............................................................................................................................................................................................................................................................19200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000
.......................................................................GC------AACAA---CAGC---------------------AACAGCAGC.................................................................................................................................................................................................................................................................................................20200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000
.........................................................................................................................AG------CA---------A------------CATCA------------------------GCAGCAGCAGCA........................................................................................................................................................................................................................22200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000
.......................................................................GC------AACAA---CAGC---------------------AACAGCAGCAG------.........................................................................................................................................................................................................................................................................................22200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000
................................................................................................................AACAGCAGCAG------CA---------A------------CATCA------------------------GCA.................................................................................................................................................................................................................................22100.1010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
........................................................................C------AACAA---CAGC---------------------AACAGCAGCAG------C........................................................................................................................................................................................................................................................................................22200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011000000000000000000000000000
......................................................................................................................................................................................................................................CAGCAG---CAACAGCAACAGAA.............................................................................................................................................................20100.1010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000
................................................................................ACAA---CAGC---------------------AACAGCAGCAG------CA---------A------------C................................................................................................................................................................................................................................................................23130.0810000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................GCAGC------AACAA---CAGC---------------------AACAGCAGCAG------CA---------..............................................................................................................................................................................................................................................................................27130.0810000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000
................................................C--CACCACCAGCAG---CAGCAGC------...........................................................................................................................................................................................................................................................................................................................................20140.0710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................AACAGCAGCAG------CA---------A------------CATCA------------------------GC..................................................................................................................................................................................................................................21160.0610000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.....................................................................CAGC------AACAA---CAGC---------------------AACAGCAGCAG------C........................................................................................................................................................................................................................................................................................25160.0610000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
..................................................................................................................CAGCAGCAG------CA---------A------------CATCA------------------------GCAGCAG.............................................................................................................................................................................................................................24170.0610000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................CAGC------AACAA---CAGC---------------------AACAGCAGCAG------.........................................................................................................................................................................................................................................................................................24170.0610000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................AGCAGCAG------CA---------A------------CATCA------------------------GCAGCAGC............................................................................................................................................................................................................................24190.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
..............................................................G---CAGCAGC------AACAA---CAGC---------------------AACA......................................................................................................................................................................................................................................................................................................21200.0510000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................GCAGC------AACAA---CAGC---------------------AACAGCA...................................................................................................................................................................................................................................................................................................21200.0510000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................GC---------------------AACAGCAGCAG------CA---------A------------CA...............................................................................................................................................................................................................................................................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................CAG------CA---------A------------CATCA------------------------GCAGCAGCAG..........................................................................................................................................................................................................................21200.0510000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................AGCAGCAG------CA---------A------------CATCA------------------------GCAGC...............................................................................................................................................................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000
....................................................................GCAGC------AACAA---CAGC---------------------AACA......................................................................................................................................................................................................................................................................................................18200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................CAGCAGC------AACAA---CAGC---------------------AACAGCA...................................................................................................................................................................................................................................................................................................23200.0510000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................CAG---CAGCAGC------AACAA---CAGC---------------------AAC.......................................................................................................................................................................................................................................................................................................22200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000
..........................................................................................................................G------CA---------A------------CATCA------------------------GCAGCAGCAGCA........................................................................................................................................................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................CAG---CAGCAGC------AACAA---CAGC---------------------AA........................................................................................................................................................................................................................................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000
......................................................................................................................AGCAG------CA---------A------------CATCA------------------------GCAGCAGCAGC.........................................................................................................................................................................................................................24200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
....................................................ACCACCAGCAG---CAGCAGC------A..........................................................................................................................................................................................................................................................................................................................................19200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.................................................................................................................ACAGCAGCAG------CA---------A------------CATCA------------------------GC..................................................................................................................................................................................................................................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
.....................................................................CAGC------AACAA---CAGC---------------------AACAGCAGC.................................................................................................................................................................................................................................................................................................22200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................AG---CAGCAGC------AACAA---CAGC---------------------A.........................................................................................................................................................................................................................................................................................................19200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................CAA---CAGC---------------------AACAGCAGCAG------CA---------..............................................................................................................................................................................................................................................................................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................GCAG---CAGCAGC------AACAA---CAG................................................................................................................................................................................................................................................................................................................................19200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................AACAA---CAGC---------------------AACAGCAGCA................................................................................................................................................................................................................................................................................................19200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
..................................................................................AA---CAGC---------------------AACAGCAGCAG------CA---------A------------C................................................................................................................................................................................................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................CAGCAGCAG------CA---------A------------CATCA------------------------GCA.................................................................................................................................................................................................................................20200.0510000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................CAGCAGC------AACAA---CAGC---------------------AACAGCAG..................................................................................................................................................................................................................................................................................................24200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEug1
AGCAACACCACAGTAACAG-----------------------------C--CACCACCAGCAG---CAGCAGC---AGCAACAG---CAAC---------------------AACAGCAGCAG------CA---------A------------CACCA------------------------ACAGCAGCAGCAAGAACACTAC--------------------------CAG------CAACAACAACAGAATATTGCC---AACAATGCCAAC------------CAATTCAACTCCTCGTCCTACTCGTATATATACAATTTCGATTCACAGTATATATTTCCGACAGGCTATCAGGACACCACCTCCTCACACTCGCAGCAAAGCGG------C---GGTGGCGGTSizeHit CountTotal NormTotal
No Reads
droBia1
AGCAGCACCACACCA---C-----------------------------C--CACCACCAGCAG---CAGCAGC------A------------------------------------------------------------C------------CAGCA------------------------GCAGCAGCAGCAGGAGCACTAC--------------------------CAG------CAGCAGCAACAGAATATCGCC---AACAACGCCAAC------------CAATTCAACTCCTCGTCCTACTCGTATATATACAATTTCGATTCACAGTATATATTCCCGACAGGCTACCAGGACACCACCTCCTCCCACTCGCAGCAGAGCGG------A---GGGGGCGGTSizeHit CountTotal NormTotal
No Reads
droTak1
AGCAACACCACAGCA---G-----------------------------C--CACCACCAGCAA---CAGCAGC------AGCAG---CAAC---------------------AA---CAGCAG------CA---ACATCAG------------CAGCA------------------------GCAGCAGCAACAAGAACACTAC--------------------------CAG------CAGCAACAACAGAATATTGCC---AACAATGCCAAT------------CAATTCAACTCCTCGTCCTACTCGTATATATACAATTTCGATTCACAGTATATATTTCCGACAGGCTATCAGGACACCACCTCCTCGCACTCGCAGCAAAGCGG------A---GGAGGCGGTSizeHit CountTotal NormTotal
No Reads
droEle1
AGCAACACCACACCA---ATCACCACCAGCAACC--G--------------CAAC---AGCAG---CAACAGC------AACAG---CAGC---------------------AACACCAGCAGCAACAACA---------A------------CAGCA------------------------GCAGCAGCAACAAGATCACTAC--------------------------CAG------CAGCAACAACAGAATATTGCC---AACAATGCCAAT------------CAATTCAACTCCTCGTCCTACTCGTATATATACAATTTCGATTCACAGTATATATTTCCGACAGGCTATCAGGACACCACCTCCTCGCATTCACAGCAAAGCGG------C---GGAGGCGGTSizeHit CountTotal NormTotal
No Reads
droRho1
AGCAACACCACAACACCAC-----------------------------T--CACCACCAGCAA---CAGCAGCAGCAGCAACAA---CAACAGCAGCAGCAGC---------AACACCAGCAACAACAACA---ACAGCAG------------CAGCA------------------------ACAGCAGCAACAAGAACACTAC--------------------------CAA------CAGCAACAACAGAATATTGCC---AACAATGCCAAT------------CCATTCAACTCCTCGTCCTACTCGTATATATACAATTTCGATTCACAGTATATATTTCCGACAGGCTACCAGGACACCACCTCCTCGCATTCGCAGCAAAGTGG------C---GGAGGCGGTSizeHit CountTotal NormTotal
No Reads
droFic1
AGCAGCACCACAGCA---A-----------------------------C--CACCACCAGCAG---CAGCAAC------AGCAG---CAG---------------------------CAGCAG------CA---ACACCAG------------CAACA------------------------GCAGCAGCAGCAAGAGCACTAC--------------------------CAG------CAGCAACAACAGAATATTGCC---AACAATGCCAAT------------CAATTCAACTCCTCGTCCTACTCGTATATATACAATTTCGATTCACAGTATATATTTCCGACAGGCTATCAGGACACCACCTCCTCGCACTCGCAGCAAAGTGG------A---GGGGGCGGTSizeHit CountTotal NormTotal
No Reads
droKik1
AGCAACACCACAATG---C-----------------------------C--CACCACCAGCAA---CAACAGC------AGCAGCAGCAAC------------------------AACAGCAG------CA---ACACCAGCAGCAG------CAGCA---ACAACAGGAGCATTACCAACAACA------------------A--------------------------CAG------CAGCAACAACAGAATATAGCC---AACAATGCCAAT------------CAATTCAACGCGTCATCCTACTCGTATATATACAATTTCGATTCACAGTATATATTTCCGACAGGCTATCAGGACACCACCTCCTCGCATTCCCAACAAAGTGCCGGCGGCGGCGGAGGTGGCSizeHit CountTotal NormTotal
No Reads
droAna3
CGCACCACCAC------------------CAACA--GCA--------ACAACAACACCAGCAGACGCAGCAGC---------------AAC------------AACACCAACAACAGCAGCAG------CA---------A------------CAGCA------------------------ACAACAGCAACAAGATCACTAC--------------------------CA---------ACAACAACAGAATATTGTC---AACAATGCCAAT------------CAATTCAATGCCTCGTCCTACTCGTACATATACAATTTCGACTCACAGTACATATTCCCGACAGGCTACCAGGACACCACCTCCTCCCACTCCCAGCAGAGCGG------------GGGCGGTSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
....................................................................................................................................................................................................................................................................................................................................................ATTCCCGACAGGCTACCAGGACACCACCC.........................................2911.001010000
....................................................................................................................................................................................................................................................................................................CAATGCCTCGTCCTACTCG...................................................................................................1911.001100000
...............................................................................................................CAACAGCAGCAG------CA---------A------------CAGCA------------------------ACA.................................................................................................................................................................................................................................23200.357130003
.........................................................................................................CACCAACAACAGCAGCAG------CA---------A------------.................................................................................................................................................................................................................................................................2130.331000001
.................................................................................................................ACAGCAGCAG------CA---------A------------CAGCA------------------------ACA.................................................................................................................................................................................................................................21200.153000003
............................................................................................................CAACAACAGCAGCAG------CA---------A------------CAGC.............................................................................................................................................................................................................................................................22200.102010001
.............................................................................................................AACAACAGCAGCAG------CA---------A------------CAGCA------------------------ACA.................................................................................................................................................................................................................................25200.102000002
.............................................................................................................AACAACAGCAGCAG------CA---------A------------CAGCA------------------------AC..................................................................................................................................................................................................................................24200.102000002
...................................................................................................................AGCAGCAG------CA---------A------------CAGCA------------------------ACAACAGC............................................................................................................................................................................................................................24200.051010000
............................................................................................................CAACAACAGCAGCAG------CA---------A------------CAGCA------------------------AC..................................................................................................................................................................................................................................25200.051010000
.............................................................................................................AACAACAGCAGCAG------CA---------A------------CAGC.............................................................................................................................................................................................................................................................21200.051000010
...............................................................................................................CAACAGCAGCAG------CA---------A------------CAGCA------------------------....................................................................................................................................................................................................................................20200.051010000
..................................................................................................................CAGCAGCAG------CA---------A------------CAGCA------------------------ACAAC...............................................................................................................................................................................................................................22200.051010000
...............................................................................................................CAACAGCAGCAG------CA---------A------------CAGC.............................................................................................................................................................................................................................................................19200.051100000
.............................................................................................................AACAACAGCAGCAG------CA---------A------------CAGCA------------------------....................................................................................................................................................................................................................................22200.051100000
droBip1
CGCACCACCA------------------ACAACA--GCA--------A------CACCAGCAG---CAGCAGC------AACAC---CAGC---AAC---------------AGCAGCAACAA------CA---ACACCAG------------CAACA------------------------ACAACAGCAACAAGATCACTAC--------------------------CAACAA---CAACAACAACAGAATATTGCC---AACAACGCCAAC------------CAATTCAACTCCTCATCCTACTCGTACATATACAATTTCGACTCACAGTACATATTCCCGACAGGCTACCTGGACACCACCTCCTCGCACTCGCAGCAGAGCGG------------GGGCGGTSizeHit CountTotal NormTotal
No Reads
dp5
AGCAACAGCA------------------GCAGCA--GCACCACAGCACG--CACCACCAGCAG---CAGCAGC------AGCAG---CAGC---------------------AGTCCGACCAG------CA---------G------GGGCACTACCAACA---------------------GCAGCAGCAGC---------AG--------------------------CAG------CAGCAACAACAGAATATTGCC---AACAACGCCAAC------------CAATTCAACTCCTCGTCCTACTCGTATATATACAACTTCGATTCACAGTATATATTCCCGACAGGCTACCAGGACACCACCTCCTCCCACTCGCAGCAGAGTGG------CGGTGGGGGCGGCSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
...........................................................................................................................................................................................................................................................................................................................................................ACAGGCTACCAGGACACCA............................................1911.0010010000000
.............................................................................................................................................................................................CAGC---------AG--------------------------CAG------CAGCAACAACAGAATATTGC.......................................................................................................................................................2911.0010010000000
................................................................................................................................................................................................................................................................................................................................................................CTACCAGGACACCACCTCCTCCC...................................2311.0010010000000
.................................................................................................................................................................................................................................................GCAACAACAGAATATTGCC---A..................................................................................................................................................2011.0010000100000
............................................................................................................................................................................................................................................................ATATTGCC---AACAACGCCAAC------------...........................................................................................................................2011.0010010000000
........................................................................................................................................................CTACCAACA---------------------GCAGCAGCAGC---------................................................................................................................................................................................................................2020.5010100000000
..................................................................................AG---CAGC---------------------AGTCCGACCAG------.........................................................................................................................................................................................................................................................................................1730.3310000000001
..............................................................................................................................................................................................AGC---------AG--------------------------CAG------CAGCAACAACA................................................................................................................................................................19200.1020200000000
............................................................................................................................................................CAACA---------------------GCAGCAGCAGC---------AG--------------------------CAG------CAGCAAC....................................................................................................................................................................28190.0510001000000
.........................................................................................................................................................................................GCAGCAGC---------AG--------------------------CAG------CAGCAACAAC.................................................................................................................................................................23200.0510000100000
......................................................CACCAGCAG---CAGCAGC------AGC........................................................................................................................................................................................................................................................................................................................................19200.0510100000000
.....................................................CCACCAGCAG---CAGCAGC------AG.........................................................................................................................................................................................................................................................................................................................................19200.0510100000000
................................................G--CACCACCAGCAG---CAGCAGC------A..........................................................................................................................................................................................................................................................................................................................................21200.0510000100000
...................................................CACCACCAGCAG---CAGCAGC------A..........................................................................................................................................................................................................................................................................................................................................20200.0510100000000
droPer2
AGCAACAGCA------------------GCAGCA--GCACCACAGCACG--CACCACCAGCAG---CAGCAGC------AGCAG---CAGT---------------------CCGACCAGCAG------GG---GCA---C------------TACCAACA---------------------GCAGCAGCAGC---------AG--------------------------CAG------CAGCAACAACAGAATATTGCC---AACAACGCCAAC------------CAATTCAACTCCTCGTCCTACTCGTATATATACAACTTCGATTCACAGTATATATTCCCGACAGGCTACCAGGACACCACCTCCTCCCACTCGCAGCAGAGTGG------CGGTGGGGGCGGCSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
..............................................................................................................................................................................................AGC---------AG--------------------------CAG------CAGCAACAAC.................................................................................................................................................................18200.051010000
....................................................ACCACCAGCAG---CAGCAGC------AGCA.......................................................................................................................................................................................................................................................................................................................................22200.051010000
............................................................................................................................................................CAACA---------------------GCAGCAGCAGC---------AG--------------------------CAG------CAGC.......................................................................................................................................................................25200.051001000
droWil2
AGGAG------------------------------------------------------GCGG---CGGCGGC---GGCAATAG---TGG-------------------------AGGAGGAG------C----------T------------CATCA------------------------GCAGCAGCAGCAACAACATTACCAGCAACAGAATCTATCAAATAATGCCAATAA---TAACAACAACA--------AC---AACAACAACAAT------------CAATTCACATCCCAATCCTATTCGTATATATACAATTTTGATTCACAGTATATATTCCCAACAGGCTATCAAGATACCACATCCTCACACTCGCAACAAAGCGGCGGTGGT---GGAGGAGGTSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.......................................................................................................................................................................................................................................................................................................ATCCCAATCCTATTCGTATAT..............................................................................................2111.00100010
................................................................................ATAG---TGG-------------------------AGGAGGAG------C----------T------------C................................................................................................................................................................................................................................................................1811.00100010
...............................................................................................................................................................................................................................................................................................................................................................................................CAAAGCGGCGGTGGT---GGAGGA...2111.00100010
............................................................................................................................................................................................................................................................................................................................................CAGTATATATTCCCAACAG...........................................................1911.00100010
..............................................................................................................................................................................................................................................................................................................................................................................................ACAAAGCGGCGGTGGT---GGAGGAGGT2511.00101000
.................................................................................................................................................................................................................................................................................................................................................................TATCAAGATACCACATCCTCACACTCG..............................2711.00101000
.................................................................................................................................................................................................................................................................................................................................................................................................AAGCGGCGGTGGT---GGAGGAGG.2111.00100010
.................................................................................................................................................................................................................................................................................................................................................................................................AAGCGGCGGTGGT---GGAGGA...1911.00100010
..............................................................G---CGGCGGC---GGCAATAG---TGG-------------------------AGGA...................................................................................................................................................................................................................................................................................................2311.00100100
....................................................................................................................................................................................................................................................................................................................................................................................................CGGCGGTGGT---GGAGGAGG.1870.14100010
..........................................................................................................................................................ATCA------------------------GCAGCAGCAGCAACA.....................................................................................................................................................................................................................19200.05100010
droVir3
ATCAGCAGCA------------------GCAACA--ACAACATCACACG--CATCACCAGCAA---CAGCAAC------AACAA---CAAC---------------------AACATTACCAA------CA---------A------------CAACA------------------------ACAGCAGCAGC---------AG--------------------------CAG------CAACAACAACAAAATATTGCCAGCAACAATACGAAT---GCCGCGAACCAATTCAACGCCTCCTCTTACTCGTATATATACAATTTCGATTCACAGTATATATTTCCGACAGGGTATCAGGAAACGAACTCATCTCATTCACAGCAAAGCGG------C---AATGGAGCTSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.....................................................................................................................................................................................................................................................................................................................CGTATATATACAATTTCGAT.................................................................................2012.002000000000000000000000000000000000000000000000000000000000000002
.......................................................................................................................................................................................................................................................................................CCGCGAACCAATTCAACGCCTCCT...........................................................................................................2411.001000000000000000000000000000000000000000000000000000000000010000
....................................ACAACATCACACG--CATCACCAGCAA---CA......................................................................................................................................................................................................................................................................................................................................................2711.001000000000000000000000000000010000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................CATTCACAGCAAAGCGG------C---A........1911.001000000000000000000000000000010000000000000000000000000000000000
.........................................................................................................................AA------CA---------A------------CAACA------------------------ACAGCAGCAGC---------A...............................................................................................................................................................................................................22200.153003000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................CA---------A------------CAACA------------------------ACAGCAGCAGC---------AG--------------------------....................................................................................................................................................................................21200.153000000000000000000000000001000000000002000000000000000000000000
............................................................................................................................................A------------CAACA------------------------ACAGCAGCAGC---------AG--------------------------CAG------CAAC.......................................................................................................................................................................26200.102001000000000000000000000000000000000010000000000000000000000000
..............................................................................................................................................................................................AGC---------AG--------------------------CAG------CAACAACAACA................................................................................................................................................................19200.102000000000000000000000000000000000000200000000000000000000000000
.........................................................................................................................................................CAACA------------------------ACAGCAGCAGC---------AG--------------------------CAG------CAAC.......................................................................................................................................................................25200.051000000000000000001000000000000000000000000000000000000000000000
.............................................................AA---CAGCAAC------AACAA---CAAC---------------------AAC.......................................................................................................................................................................................................................................................................................................21200.051001000000000000000000000000000000000000000000000000000000000000
....GCAGCA------------------GCAACA--ACAACAT...............................................................................................................................................................................................................................................................................................................................................................................19200.051000000000000000000000000000000100000000000000000000000000000000
.............................................................................................................................................................A------------------------ACAGCAGCAGC---------AG--------------------------CAG------CAACA......................................................................................................................................................................22200.051001000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................A---------A------------CAACA------------------------ACAGCAGCAGC---------AG--------------------------....................................................................................................................................................................................20200.051000000000000000000000000000000000000100000000000000000000000000
............................................................................................................................................................CA------------------------ACAGCAGCAGC---------AG--------------------------CAG------CAA........................................................................................................................................................................21200.051000000000000000000000000000000100000000000000000000000000000000
.................................................................................................................................CA---------A------------CAACA------------------------ACAGCAGCAGC---------AG--------------------------C...................................................................................................................................................................................22200.051000000000000000000000000000000000000000000000000000000000000010
.................................................................................................................................CA---------A------------CAACA------------------------ACAGCAGCAGC---------................................................................................................................................................................................................................19200.051000000000000100000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................CAGC---------AG--------------------------CAG------CAACAACAACA................................................................................................................................................................20200.051000000000000000000000000100000000000000000000000000000000000000
..........................................................................................................................................................AACA------------------------ACAGCAGCAGC---------AG--------------------------CA..................................................................................................................................................................................19200.051000000000000000000000000000000000100000000000000000000000000000
.........................................................CAGCAA---CAGCAAC------AACAA---CAAC---------------------A.........................................................................................................................................................................................................................................................................................................23200.051001000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................A---------A------------CAACA------------------------ACAGCAGCAGC---------AG--------------------------CAG------CA.........................................................................................................................................................................25200.051000000000000000000001000000000000000000000000000000000000000000
........................................................................................................................................................................................AGCAGCAGC---------AG--------------------------CAG------CAACAAC....................................................................................................................................................................21200.051001000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................CA------------------------ACAGCAGCAGC---------AG--------------------------CAG------CA.........................................................................................................................................................................20200.051000100000000000000000000000000000000000000000000000000000000000
droMoj3
G--------------------------------------------CAAT--CATCAGCAGCAG---CATCCAC------AGCAG---CAGC---------------------AACAGCAGCAC------CTTAATGCGCAT------------CATCA------------------------GCAACAGCAACAACAACAGTAT--------------------------CAA------CAGCAACAACAGAATATTGCCAGCAACAATGCGAATAGTGCAGCGAACCAATTCAATGCCTCCTCTTATTCGTATATATACAATTTCGATTCACAGTATATATTTCCGACAGGCTATCAGGAAACCAATTCGTCTCATTCGCAGCAAAGCGG------T---AACGGCACCSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
.......................................................................................................................................................................................................................................................................................................................................................................GAAACCAATTCGTCTCATTC...............................2011.001100000
...................................................................................................................................................................................................................................................................................................................................TTCGATTCACAGTATATATTTCC................................................................2311.001000010
.................................................................................CAG---CAGC---------------------AACAGCAGCAC------C........................................................................................................................................................................................................................................................................................19200.102000020
................................................................................GCAG---CAGC---------------------AACAGCAGCAC------C........................................................................................................................................................................................................................................................................................20200.051000010
droGri2
AGCAGCAGCA------------------GCAACA--CTCACATCACACA--CATCACCAGCAG---CAGCAGC---AGCA---------AC---------------------AACAGCAGCAG---------------------------------------------------------------------------CATTAC--------------------------CAACAG---CAACAACAACAAAATATTGCC---AACAATGCGAATGCAGCGGCGAACCAATTCAATGCTTCCTCCTATTCGTATATATACAATTTCGATTCACAGTACATATTCCCGACAGGCTATCAGGAAACGAACTCATCCCATTCGCAGCAAAGTGC------A---AATGGAGCTSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
...............................ACA--CTCACATCACACA--CATCACC................................................................................................................................................................................................................................................................................................................................................................2311.00110
........................................................................................................................................................................................................................................................................................................................................................CCGACAGGCTATCAGGAAACGAACT.........................................2511.00110
.......................................ACATCACACA--CATCACCAGCAG---C.......................................................................................................................................................................................................................................................................................................................................................2311.00110
.......................................................................................................................................................................................................................................................................AACAATGCGAATGCAGCGGCG..............................................................................................................................2120.50101
..............................................................G---CAGCAGC---AGCA---------AC---------------------AACAGCA...................................................................................................................................................................................................................................................................................................21200.10220
.......................................................................................................................................................................................................................................AACAG---CAACAACAACAAAAT............................................................................................................................................................20200.05110
...................................................CATCACCAGCAG---CAGCAGC---A.............................................................................................................................................................................................................................................................................................................................................20200.05110

Generated: 05/17/2015 at 10:58 PM