ID:

der_814

 Coordinate:

scaffold_4784:14474313-14474463 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-36.2 -36.1 -35.7 -35.6

Flybase annnotation

CDS [Dere\GG13725-cds]; exon [dere_GLEANR_13965:2]; intron [Dere\GG13725-in]; Antisense to intron [Dere\GG15683-in]

No Repeatable elements found

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
TAAGGCGGAATGGCAATAGGAAAAGAGCTATCAGTGTGATTTTGGTAACGTTGGGCGAAGGTTCGGAACTGATCGAACCTGTCTCTATTGACGTTTTGCTTAGCAGGTGCGATGGCAACAGGTCAATTAGCATATCTACCGCAGCGATAAGAAGCGTAATTGTCATTACTGAGGTTCTTTTACCCTGTACTTTCCATCCAGAAACCTTGTCAAATCAGAGGAGTCGAAGAAGTTACACAAAATGGAAGTAA
**************************************************((.((.(((((..(((...(((..(((((..((..((.(((((...(((((.((.((((.((((((.............)).)))))))))).........)))))....))))).))..)))))))..)))..)))..)))))...))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total V107
male body		 M055
female body
 V108
head
 V040
embryo
 M057
embryo
....................................................................................................................................................................................................................AATCAGAGGAGTCGAAGAAGT.................. 21 0 1 4.00 4 3 1 0 0 0
............................................GTAACGTTGGGCGAAGGTT............................................................................................................................................................................................ 19 0 1 3.00 3 2 1 0 0 0
.........................................................................................GACGTTTTGCTTAGCAGA................................................................................................................................................ 18 1 1 3.00 3 0 2 1 0 0
...........................................GGTAACGTTGGGCGAAGG.............................................................................................................................................................................................. 18 0 1 2.00 2 2 0 0 0 0
...............................................ACGTTGGGCGAAGGTTCGGAACT..................................................................................................................................................................................... 23 0 1 2.00 2 1 1 0 0 0
.................................................................GAACTGATCGAACCTGTCTCTATT.................................................................................................................................................................. 24 0 1 2.00 2 2 0 0 0 0
................................................................................................................................................................................................................................CGAAGAAGTTACACAAAATGGAA.... 23 0 1 2.00 2 1 0 1 0 0
.....................................................................................................................................................................................................................ATCAGAGGAGTCGAAGAAGT.................. 20 0 1 2.00 2 2 0 0 0 0
.....................................................................................................................................................................................................................ATCAGAGGAGTCGAAGAAGTTA................ 22 0 1 1.00 1 1 0 0 0 0
..............................................AACGTTGGGCGAAGGTTCGGAAC...................................................................................................................................................................................... 23 0 1 1.00 1 1 0 0 0 0
.............................................................TTCGGAACTGATCGAACCTGTCT....................................................................................................................................................................... 23 0 1 1.00 1 0 0 0 0 1
.................................................GTTGGGCGAAGGTTCGGAACTGATCGA............................................................................................................................................................................... 27 0 1 1.00 1 0 1 0 0 0
.....................................GATTTTGGTAACGTTGGGCGAAGGG............................................................................................................................................................................................. 25 1 1 1.00 1 1 0 0 0 0
.....................................................................................................................................................................................................GCAGAAACCTTGTCAAATCAGAGGAGTC.......................... 28 1 1 1.00 1 1 0 0 0 0
.................................................................GAACTGATCGAACCTGTCTCTATTGACGT............................................................................................................................................................. 29 0 1 1.00 1 1 0 0 0 0
.................................................................................................................................................................GTCATTACTGAGGTTCTTTTACCCC................................................................. 25 1 1 1.00 1 0 0 0 0 1
...............................................ACGTTGGGCGAAGGTTCG.......................................................................................................................................................................................... 18 0 1 1.00 1 0 0 1 0 0
................................................................................................................................................................................................................................CGAAGAAGTTACACAAAATGGAAGT.. 25 0 1 1.00 1 0 1 0 0 0
.............................................................................................................................................................................................................CTTGTCAAATCAGAGGAGTCGAAGAAGT.................. 28 0 1 1.00 1 1 0 0 0 0
............................................................................................GTTTTGCTTAGCAGGTGCGATGGC....................................................................................................................................... 24 0 1 1.00 1 0 0 0 1 0
................................................................................................................................................................................................................................CGAAGAAGTTACACAAAATGGAAGTA. 26 0 1 1.00 1 1 0 0 0 0
..................................................................AACTGATCGAACCTGTCTCTATTGAC............................................................................................................................................................... 26 0 1 1.00 1 0 1 0 0 0
...........................................GGTAACGTTGGGCGAAGGTT............................................................................................................................................................................................ 20 0 1 1.00 1 1 0 0 0 0
...............................................................CGGAACTGATCGAACCTGTCTCA..................................................................................................................................................................... 23 1 1 1.00 1 0 0 1 0 0
................................................................................................................................................................................................................GTCAAATCAGAGGAGTCGAAGAAAT.................. 25 1 1 1.00 1 0 0 0 1 0
.....................................GATTTTGGTAACGTTGGGC................................................................................................................................................................................................... 19 0 1 1.00 1 0 0 1 0 0
.....................................GATTTTGGTAACGTTGGGCGAAGGTT............................................................................................................................................................................................ 26 0 1 1.00 1 1 0 0 0 0
.....................................................................................................................................................................................................................ATCATAGGAGTCGAAGAAGT.................. 20 1 1 1.00 1 0 0 1 0 0
...................................................................................................................................................................................................................AAATCAGAGGAGTCGAAGAAGT.................. 22 0 1 1.00 1 1 0 0 0 0
.........................................................................................................................................................................................................AAACCTTGTCAAATCAGAGGAGTCGAAG...................... 28 0 1 1.00 1 1 0 0 0 0
............................................GTAACGTTGGGCGAAGGTTCGGAAC...................................................................................................................................................................................... 25 0 1 1.00 1 1 0 0 0 0
......................................ATTTTGGTAACGTTGGGCGAAGGTT............................................................................................................................................................................................ 25 0 1 1.00 1 1 0 0 0 0
.....................................................................................TATTGACGTTTTGCTTAGCAGA................................................................................................................................................ 22 1 1 1.00 1 0 0 1 0 0
..................................................................................CTCTATTGACGTTTTGCTTAGCAGAAAC............................................................................................................................................. 28 3 1 1.00 1 1 0 0 0 0
........................................................................................................................................................................................................GAAACCTTGTCAAATCAGAGGAGT........................... 24 0 1 1.00 1 1 0 0 0 0
...................................................TGGGCGAAGGTTCGGAACTGATCGAA.............................................................................................................................................................................. 26 0 1 1.00 1 1 0 0 0 0
...........................................................................AACCTGTCTCTATTGACGTT............................................................................................................................................................ 20 0 1 1.00 1 1 0 0 0 0
..........................................................................GAACCTGTCTCTATTGACGT............................................................................................................................................................. 20 0 1 1.00 1 1 0 0 0 0
....................................................................................................................................................................................................................AATCAGAGGAGTCGAAGAAGTTA................ 23 0 1 1.00 1 1 0 0 0 0
.................................................GTTGGGCGAAGGTTCGGAA....................................................................................................................................................................................... 19 0 1 1.00 1 0 1 0 0 0
.............................................................................................................................................................................................................CTTGTCAAATCAGAGGAGT........................... 19 0 1 1.00 1 1 0 0 0 0
..............................................................TCGGAACTGATCGAACCTGTCTCTATT.................................................................................................................................................................. 27 0 1 1.00 1 1 0 0 0 0
......................................................................GATCGAACCTGTCTCTATT.................................................................................................................................................................. 19 0 1 1.00 1 0 1 0 0 0
.....................................................GGCGAAGGTTCGGAACTGATC................................................................................................................................................................................. 21 0 1 1.00 1 1 0 0 0 0
...................................................................ACTGATCGAACCTGTCTCTATTGACGT............................................................................................................................................................. 27 0 1 1.00 1 1 0 0 0 0
........................................TTTGTTAACGTTGGGCGAAGGT............................................................................................................................................................................................. 22 1 1 1.00 1 0 0 1 0 0
...............................................................................................................................................................................................................................TCGAAGAAGTTACACAAAATGGAA.... 24 0 1 1.00 1 0 0 1 0 0
.................................................GTTGGGCGAGGTTTCGGA........................................................................................................................................................................................ 18 2 3 0.33 1 0 0 0 1 0
............................................GTGACGCTGGGCGCAGGTT............................................................................................................................................................................................ 19 3 11 0.09 1 0 0 0 1 0

Anti-sense strand reads

ATTCCGCCTTACCGTTATCCTTTTCTCGATAGTCACACTAAAACCATTGCAACCCGCTTCCAAGCCTTGACTAGCTTGGACAGAGATAACTGCAAAACGAATCGTCCACGCTACCGTTGTCCAGTTAATCGTATAGATGGCGTCGCTATTCTTCGCATTAACAGTAATGACTCCAAGAAAATGGGACATGAAAGGTAGGTCTTTGGAACAGTTTAGTCTCCTCAGCTTCTTCAATGTGTTTTACCTTCATT
**************************************************((.((.(((((..(((...(((..(((((..((..((.(((((...(((((.((.((((.((((((.............)).)))))))))).........)))))....))))).))..)))))))..)))..)))..)))))...))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total V040
embryo
 M055
female body
 V060
head
..........................................................................................................................................AGAGCCGCTATTCTTCGCATT............................................................................................ 21 3 1 1.00 1 0 1 0
.....................TTTCTCGATAGTCACACATA.................................................................................................................................................................................................................. 20 2 1 1.00 1 1 0 0
.....................TTTCTCGATAGTTACACCAA.................................................................................................................................................................................................................. 20 2 1 1.00 1 1 0 0
.....................TTTCTCGATAGTCAAACAA................................................................................................................................................................................................................... 19 2 2 0.50 1 1 0 0
..................................................................................................................................................................................................................................TTCTTCGATGTGTTTTACTCT.... 21 3 4 0.25 1 0 0 1
.....................TTTCTCGATAGTTACACAAAA................................................................................................................................................................................................................. 21 2 9 0.11 1 1 0 0
......................TTCTCGATAGTTACACAAA.................................................................................................................................................................................................................. 19 2 13 0.08 1 1 0 0
......................TTCTCGATAGTTAGACTA................................................................................................................................................................................................................... 18 2 17 0.06 1 1 0 0
.....................TCTCTCGATAGTTACACTGA.................................................................................................................................................................................................................. 20 3 17 0.06 1 1 0 0
.....................TTTCTCTCTAGTTACACTAA.................................................................................................................................................................................................................. 20 3 20 0.05 1 1 0 0
.....................TTTCTCGATCGTCAAACAA................................................................................................................................................................................................................... 19 3 20 0.05 1 1 0 0
.....................TTTCTCGATAGTAACACAC................................................................................................................................................................................................................... 19 3 20 0.05 1 1 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droEre2 scaffold_4784:14474263-14474513 - der_814 TAAGGCG-----GAAT--------GGCAATAGGAAAA--GAGCT---------------------ATCAGTGTGATTTTGGTA-ACGTTGGGCGAAGGTTCGG----A-----------------------------ACTGATCGAACC-TGTCTCT-----ATTGACGTT-----------------------TTGCTTAG-----CAGGTG----------------CGATGGCAACA-GGTCAATTAGCATATCT---ACC--GC---------AGCGATAAGAAG--------CGTAATTGTCATTACTGAG----------------------------------GTT-CTTTTA-------------------CC--CTGT--------A---C------TTTCCATCCAG------AAACCTTGTCAAATCAGAGGA------GTCGAAGAAGTTAC-------------------------------------------ACAAAATGGAA---GT--AA
droYak3 3L:14592816-14593068 - dya_795 TAAGGCG-----GAAT--------GGCAATAGGAAAA--AAGCT---------------------ATCAGTGTGATTTTGGTA-GCGTTGGGCGAAGGTTCGG----A-----------------------------ACTGATCGAACC-TGTCTCT-----ATTGACGTT-----------------------TTGCTTAG-----CAGGTG----------------TGATGGCAACA-AGTCAATTAGCATATCT---ACC--GC---------AGCGATAAGAAG--------CGTAATTGTCATTACTGAG----------------------------------GTT-CTTTTT-------------------CT--ATGT--------A-CTT------TTTTTATCCAG------AAACCTTGTCAAGTCAGAGGA------GTCGAAGAAGTTGC-------------------------------------------CCAAAATGGAA---GT--AA
droSec2 scaffold_0:6633101-6633353 - TAAGGCG-----GAAT--------GGCAATAGGAAAA--ATGCT---------------------ATCAGTGTGGTTTTGGTA-ACGTTGGGCGAAGGTTCGG----A-----------------------------ACTGATCGAACC-TGTCTCT-----ATTGACGTT-----------------------TTGCTTAG-----CAGGTG----------------TGATGGCAACA-AGTCAATTAGCATATCT---ATT--CC---------ACCGATAAGAAG--------CGTAATTTTCATTACTGAG----------------------------------GTT-CTTTTA-------------------CC--ATGT--------A-TTT------TTTTTATCCAG------AAACCTTGTCAAATCAGAGGA------GTCGAAGAAATTAC-------------------------------------------CCAAAATGGAA---GT--AA
droSim2 3l:14159832-14160084 - dsi_7955 TAAGGTG-----GAAT--------GGCAATAGGAAAA--AAGCT---------------------ATCAGTGTGGTTTTGGTA-ACGTTGGGCGAAGGTTCGG----A-----------------------------ACTGATCGAACC-TGTCTCT-----ATTGACGTT-----------------------TTGCTTAG-----CAGGTG----------------TGATGGCAACA-AGTCAATTAGCATATCT---ATT--CC---------ACCGATAAGAAG--------CGTAATTGTCATTACTGAG----------------------------------GTT-CTTTTA-------------------CC--AAGT--------A-TTT------TTTTTATCCAG------AAACCTTGTCAAATCAGAGGA------GTCGAAGAAGTTAC-------------------------------------------CCAAAATGGAA---GT--AA
dm3 chr3L:14502970-14503223 - TAAGGTG-----AAAT--------GGCAATAGGAAAA--AAGGT---------------------ATCAGTGTGGTTTTGGTA-ACGTTGGGCGAAGGTTCGG----A-----------------------------ACTGATCGAACC-TGTCTCT-----ATTGACGTT-----------------------TTGCTTAG-----CAGGTG----------------TGATAGCAACA-AGTCAATTAGCATATCT---ATT--CC---------ACCGATAAGAAG--------CGTAATTGTCATTGCTGAG----------------------------------GTT-CTCTTA-------------------CC--ATGT--------ATTTT------TTTTTATCCAG------AAACCTTGTCAAATCGGAGGA------GTCGAAGAAGTTAC-------------------------------------------CCAAAATGGAA---GT--AA
droEug1 scf7180000409456:732388-732656 - TAAGGTG-----GAATGCGATATTGGCATATGAAAAA--TAGGA---------------------ATCAGTGTGATTTTGGTA-ACGTTAGACGAAGGTTCGA----A-----------------------------ATTGATCGGGCCCAAACTCT-----ATTGACGTT-----------------------TTTCTGTG-----CAGGTGT--------------GTGATGACAACA-AGTCAATTAGCATATCT---CTA--CC--------TGCTGATAAGAA----------GTAATTGTAATTACTTTG----------------------------------GTT-TCATTTCGAT--TTGT---------TT--------CT-----TTTT------TTTTTATCCAG------AAACCTTGTCAAATCAGAGGA------GTCAAAGAAGTTAC-------------------------------------------CCAAAATGGAA---GT--AA
droBia1 scf7180000302428:5389878-5390128 + TAAGGTG-----CAAC--------AGCAGTACGAAAA--TTGGA---------------------ATCAGTGTGATTTTGGTA-ACGTCGGCCGAAGGTTCGG----A-----------------------------ACTGATCGAACC-TGTCTCT-----ATTGACGTT-----------------------TTGCTTAG-----CAGGTG----------------TGATGGCAACA-AGTCAATTAGCATATCT---GCC--CC---------ACTGATAAAGAG--------CCTAATTGTAATTATTGGG----------------------------------GTT-TCTTTT-------------------TT--------CT-----CTAT------GTGCTATCCAG------AAACCTTGTCAAATCGGAGGA------GTCGAAGAAGTTGC-------------------------------------------CCAAAATGGAA---AC--AA
droTak1 scf7180000415135:175015-175259 - TAAGGGG-----CGAT--------GGAAATACGACAAAATTGGA---------------------ATCAGTGTGATTTTGGTA-ACGTTGGGCGAAGGTTCGA----A-----------------------------ACCGATCGAACC-TGTCTCT-----ATTGACGTT-----------------------TTTCCAAG-----CAGGTG----------------TGATGGCAACA-AGTCAATTAGCATATCT---CAA--CT---------GCTGATAAGAGG--------CGTAATTATAATTACTGAG----------------------------------GTT-TAT----------------------------------------TTT------TTTCTATCCAG------AAACCTTGTCAAATCAGAGGA------GTTGAAGAAGTTGC-------------------------------------------CCAAAATGGAA---GT--AA
droEle1 scf7180000491199:1640097-1640354 - TAAGGTG-----CAAT--------GGCAATACCAAAA--TTGAA---------------------ATCAGTGTGATTTTGGTA-GCGTCGGGCGAAGGTTCGA----A-----------------------------ACTGATCGAACC-TGTCTCT-----ATTGACGTT-----------------------TTGCAGAG-----CAGGTG----------------TGATGGCAACA-AGTCAATTAGCATATCACATATC--GT---------ACTGATAAGAAG--------CGCAATTGTAATTACCGAGCTT-----------------------------TCGTT-TTTTTT-------------------C-------GA-------TTTT------TTTTTATCCAG------AAACCTTGTCAAATCAGAGGA------GCCGAAGAAGTTAC-------------------------------------------CCAAAATGGAA---GT--AA
droRho1 scf7180000772405:171-427 + TAAGGAG-----AAAT--------GGGAATACGAAAA--TTGGA---------------------ATCAGTGTGATTTTGGTA-GCGTCGGGCGAAGGTTCGG----A-----------------------------ACTGATCGAACC-TGTCTCT-----ATTGACGTT-----------------------TTGGTGAG-----CAGGTG----------------TGATGGCAACA-AGTCAATTAGCATATCA-----C--CT---------ACTGATAAGAAG--------CGTAATTGTAATTACTGAG----------------------------------GTG-TCGTTT--------TT-------TTC-------GATT-----TTCA------TTTATATCCAG------AAACCTTGTCAAATCAGAGGA------GCCGAAGAAGTTGC-------------------------------------------CCAAAATGGAAAATGG--AA
droFic1 scf7180000453784:841502-841762 - TAAGGTG-----CAAT--------GGCAGTAGAGAAA--TCGGA---------------------ATCAGTGTGATTTTGGTA-ACGTTGGGCGAAGGTTCGG----G-----------------------------ACTGATCGAACC-TGTCTCGATTCGATTGACGTT-----------------------TTGCATAG-----CAGGTG----------------CGATGGCAACA-AGTCAATTAACATATCA-----C--CA---------ACTGATAAGAAG--------CGTAATTATAATTACTAAG----------------------------------GTTTCTTTTT-------------------TC--ATGT----CGTTC-TTT------TTTTTATCCAG------AAACCTTGTCAAATCAGAGGA------GTCGAAGAAGTTGC-------------------------------------------CCAAAATGGAA---GC--GA
droKik1 scf7180000302441:560996-561252 - TAAGG-G-----TTAT--------GGCAAAAAAGGAAAATTAGA------GCCAT-C--------ATCAGTGTGATTTTGGTA-ACGTTCGGTGAAGGTTCGGCGGTA-----------------------------ACTGATCGAACC-TGTCTC---------------------------------------------------CAGGTG----------------TGAAGGCAGCA-AATCAATTAGCATATCT-----C--CA---------ACTGATAAGAAAAG-T----CGTAATTGTAATTAACCAG----------------------------------CTT-T----A---CCTTTGT-------TTC-------GTTT-----TTCT------TTTTTATCCAG------AAGTCTTGTCAAAGCAGAAGAGCAGCAGTCAAAGAAGTTGC-------------------------------------------CCAAAATGGAG---GT--TA
droAna3 scaffold_13337:4582625-4582897 + TAAGG-------GAAT--------GGCAATACGAAAA--TTAGA------AGTG-CCGGGGGGAAATCAGTATGATTTTGGTA-TCGCTGGGCGAAGGTTCGG---GA-----------------------------ATCGATCGAACC-TGTCGCC-----GTTGACATT-----------------------CCGCTTAG-----CAGGTG----------------TGATGGCAACA-AGTCAATTAGCATATAT-----CGCCG----GT-GGGCCGATAAGAAA---T----CGTAATTATAATTATGGTAT-------------------------------------------------TTGTGTGTTCTT-TT--------CT-----TTTG------CTTTTATCCAG------AAACCTTGTCAAATCAGAGGA------GCCGAAAAAGGTGG-------------------------------------------CCAAAATGGAA---GC--TA
droBip1 scf7180000395450:704151-704418 + TAAGG-------GAAT--------GGCAATACGAAAA--TTGGA------AGTG-CCGGGGGGAAATCAGTATGATTTTGGTA-TCGCTGGGCGAAGGTTCGG---GA-----------------------------ATCGATTGAACC-TGTCTCC-----GTTGACATT-----------------------CCGGTGAG-----CAGGTG---------------GTGATGGCAACA-AGTCAATTAGCATATAT-----C--GC---AACC-CGCCGATAAGAATTC-CTATAAGTAATTATAATTATGGTAT-------------------------------------------------TTGT-------------GT------------GTT------CTTTTATCCAG------AAACCTCGTCAAATCAGAGGA------GCCGAAAAAGGTGG-------------------------------------------CCAAAATGGAG---GC--TA
dp5 XR_group6:7201971-7202324 - TAAGGTGCTTCGGAAT--------GGCAAAGAGT------T---ATAG-AGAAAT----------GTCAGTGTTATTTTGGAA-ACGTTAGGCACAGGTTCGA---TC-----------------------------GACGACAAAACC-TGTCTCA-----ACTGACATTCAATTTCCGATTTGCGTTCGTTGTTGCTCAGCCAGCCAGGTGCGGAGAGGGGCCACA--GGCAGAAACAGAGCCAATTAGCATATCA---GAG--A--------GTACCGATAAGCAGAGCC----CATAATTATGATTACTCAAATTACTCGATTTGTTGACTGATTGAA--------GTT-CTTTCT-------------------C----T--GA----CTC-TTTTCTCTGCCTCCCCACAG------AACCATTGTCAAGCCGGAGGA------GCTGAAAAAATTGC------------AAGCACC-------------------GACGTCCAATATGGAG---GC--TA
droPer2 scaffold_41:555076-555429 - TAAGGTGCTTCGGAAT--------GGCAAAGAGGT---------ATAG-AGAAAT----------GTCAGTGTTATTTTGGAA-ACGTTAGGCAAAGGTTCGA---TC-----------------------------GGCGACAGAACC-TGTCTCA-----ACTGACATTCAATTTCCGATTTGCGTTCGTTGTTGCTCAGCCAGCCAGGTGCGGAGAGGGGCCACA--GGCAGAAACAGAGCCAATTAGCATATCA---GAG--A--------GTACCGATAAGCAGAGCC----CATAATTATGATTACTCAAATTACTCGATTTGTTGACTGATTGAA--------GTT-CTTTCT-------------------C----T--GA----CTC-TTTTCTCTGCCTCCCCACAG------AACCATTGTCAAGCCGGAGGA------GCTGAAAAAATTGC------------AAGCACC-------------------GACGTCCAATATGGAG---GC--TA
droWil2 scf2_1100000004762:3875591-3875931 - TAAGAACCT---GAAT--------GGCAAAAACAAAA--AATCCATTAGAACGC-TCTTGGCCCAATCAGTGTTATTTTGGAG-ACGTAAGGCAAAGGTTCGA---ATAA---AGAATTTTTCGCGCA---------G------------------C-----ACTGACTTGCAATATACAAT-----------------ACA-----TAGGTG----------------GGAATTGTTGA-ACACAATTAGCATA------------------------CGATAAGAATGG-CCAT-AATAATTATAATTACTCAAT-------GTGTGATGACTGATTGACAATGTTTGGTT-TTTTTTC------------------TTTTCT--GT--TTTTC--TTTTTTTGTTATTTCACAG------AACCGTAGTTAAAGCCGAGAA------GTTACCACAACAAC------------AA-------CAGCAGCAACAGTTGCCGATGTCCAAAATGGAA---GC--TA
droVir3 scaffold_13049:21816444-21816801 + TAACGGC-----TAAT--------GGCAAACGGCAAA--CGGCAATCG-GCGAACGTTTGGGCCAACTAGTTCAATTTCGAAAGGCGAAAGGCAAAGGTTTGC---GGGGTTGCATATAATTTGCACAGCGTTTGAAATCAA------------GCA-----GCTGACGGGCAAATTTCCGTT-----------TGCTGTAG-----CGACAG----------------GTTCGGAAACG-TTTCAATTAACATACAT---ATA--T-----ACA-ATTTGATAAAGCG--CC----AATCATTCTAATTACCCAC----------------------------------TGT-GA-------TATAT-----------AC--CT------------GTC------TCTCTACCCAACAGTCAACCGAGTGCGATTGCGGAGGA------GCTAAAGAAGTTACCGAACTACGTGCAACCAGCGAGGGTGACGAAGGCGAC-CACTGCCAAAATGGAA---GCCCAA
droGri2 scaffold_15053:182100-182331 + GGCG---------AAA--------GGCA-----------AAGGT---------------------ATCGGT--GCTTTTAGTT-ATTTTT--------TTCGC----A-----------------------------GCTGACG-------------------------GGCAAATTTCCGTTTGCTG------TAGAGCAA-----CAGGTG----------------GGAG----ACAAAATCAATTAACATACAT---AGT--ACACACACA-TTTTGATAAGAGTGG-C----AATCATAATAATTACTCAA----------------------------------TGT-GA-------CAT-TAT---------TT--------GT-----TGTG------TCTTCGTACAG------TGCGTTTGT------GGACGA------GTTGAAGAAGTTGC-------------------------------------------AGCCACCGAAG-GTGC--CA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droEre2
TAAGGCG-----GAAT--------GGCAATAGGAAAA--GAGCT---------------------ATCAGTGTGATTTTGGTA-ACGTTGGGCGAAGGTTCGG----A-----------------------------ACTGATCGAACC-TGTCTCT-----ATTGACGTT-----------------------TTGCTTAG-----CAGGTG----------------CGATGGCAACA-GGTCAATTAGCATATCT---ACC--GC---------AGCGATAAGAAG--------CGTAATTGTCATTACTGAG----------------------------------GTT-CTTTTA-------------------CC--CTGT--------A---C------TTTCCATCCAG------AAACCTTGTCAAATCAGAGGA------GTCGAAGAAGTTAC-------------------------------------------ACAAAATGGAA---GT--AASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
..................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCAGAGGA------GTCGAAGAAGT..................................................................2114.0041000300
................................................................................GTA-ACGTTGGGCGAAGGTT...........................................................................................................................................................................................................................................................................................................................................................................................................................................1913.0031000200
.....................................................................................................................................................................GACGTT-----------------------TTGCTTAG-----CAGA............................................................................................................................................................................................................................................................................................................................1813.0032000010
...............................................................................GGTA-ACGTTGGGCGAAGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................1812.0020000200
....................................................................................ACGTTGGGCGAAGGTTCGG----A-----------------------------ACT...................................................................................................................................................................................................................................................................................................................................................................................................2312.0021000100
......................................................................................................G----A-----------------------------ACTGATCGAACC-TGTCTCT-----ATT..........................................................................................................................................................................................................................................................................................................................................................................2412.0020000200
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAAGAAGTTAC-------------------------------------------ACAAAATGGAA---......2312.0020000110
...................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAGAGGA------GTCGAAGAAGT..................................................................2012.0020000200
...................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAGAGGA------GTCGAAGAAGTTA................................................................2211.0010000100
..................................................................................A-ACGTTGGGCGAAGGTTCGG----A-----------------------------AC....................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000100
..................................................................................................TTCGG----A-----------------------------ACTGATCGAACC-TGTCT....................................................................................................................................................................................................................................................................................................................................................................................2311.0010100000
......................................................................................GTTGGGCGAAGGTTCGG----A-----------------------------ACTGATCGA.............................................................................................................................................................................................................................................................................................................................................................................................2711.0011000000
.........................................................................GATTTTGGTA-ACGTTGGGCGAAGGG............................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000100
......................................................................................................G----A-----------------------------ACTGATCGAACC-TGTCTCT-----ATTGACGT.....................................................................................................................................................................................................................................................................................................................................................................2911.0010000100
................................................................................................................................................................................................................................................................................................................GTCATTACTGAG----------------------------------GTT-CTTTTA-------------------CC--CC..............................................................................................................................................2511.0010100000
....................................................................................ACGTTGGGCGAAGGTTCG.........................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000010
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAAGAAGTTAC-------------------------------------------ACAAAATGGAA---GT--..2511.0011000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGTCAAATCAGAGGA------GTCGAAGAAGT..................................................................2811.0010000100
........................................................................................................................................................................GTT-----------------------TTGCTTAG-----CAGGTG----------------CGATGGC...................................................................................................................................................................................................................................................................................................2411.0010001000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAAGAAGTTAC-------------------------------------------ACAAAATGGAA---GT--A.2611.0010000100
...........................................................................................................A-----------------------------ACTGATCGAACC-TGTCTCT-----ATTGAC.......................................................................................................................................................................................................................................................................................................................................................................2611.0011000000
...............................................................................GGTA-ACGTTGGGCGAAGGTT...........................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000100
....................................................................................................CGG----A-----------------------------ACTGATCGAACC-TGTCTCA-----.............................................................................................................................................................................................................................................................................................................................................................................2311.0010000010
.........................................................................GATTTTGGTA-ACGTTGGGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000010
.........................................................................GATTTTGGTA-ACGTTGGGCGAAGGTT...........................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000100
.................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATCAGAGGA------GTCGAAGAAGT..................................................................2211.0010000100
.......................................................................................................................................................................................................................................................................................................................................................................................................................................AAACCTTGTCAAATCAGAGGA------GTCGAAG......................................................................2811.0010000100
................................................................................GTA-ACGTTGGGCGAAGGTTCGG----A-----------------------------AC....................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000100
..........................................................................ATTTTGGTA-ACGTTGGGCGAAGGTT...........................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000100
............................................................................................................................................................T-----ATTGACGTT-----------------------TTGCTTAG-----CAGA............................................................................................................................................................................................................................................................................................................................2211.0010000010
................................................................................................................................................................................................................................................................................................................................................................................................................................G------AAACCTTGTCAAATCAGAGGA------GT...........................................................................2411.0010000100
........................................................................................TGGGCGAAGGTTCGG----A-----------------------------ACTGATCGAA............................................................................................................................................................................................................................................................................................................................................................................................2611.0010000100
.................................................................................................................................................AACC-TGTCTCT-----ATTGACGTT-----------------------.............................................................................................................................................................................................................................................................................................................................................2011.0010000100
................................................................................................................................................GAACC-TGTCTCT-----ATTGACGT.....................................................................................................................................................................................................................................................................................................................................................................2011.0010000100
..................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCAGAGGA------GTCGAAGAAGTTA................................................................2311.0010000100
......................................................................................GTTGGGCGAAGGTTCGG----A-----------------------------A.....................................................................................................................................................................................................................................................................................................................................................................................................1911.0011000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGTCAAATCAGAGGA------GT...........................................................................1911.0010000100
...................................................................................................TCGG----A-----------------------------ACTGATCGAACC-TGTCTCT-----ATT..........................................................................................................................................................................................................................................................................................................................................................................2711.0010000100
............................................................................................................................................GATCGAACC-TGTCTCT-----ATT..........................................................................................................................................................................................................................................................................................................................................................................1911.0011000000
..........................................................................................GGCGAAGGTTCGG----A-----------------------------ACTGATC...............................................................................................................................................................................................................................................................................................................................................................................................2111.0010000100
.........................................................................................................................................ACTGATCGAACC-TGTCTCT-----ATTGACGT.....................................................................................................................................................................................................................................................................................................................................................................2711.0010000100
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGAAGAAGTTAC-------------------------------------------ACAAAATGGAA---......2411.0010000010
droYak3
TAAGGCG-----GAAT--------GGCAATAGGAAAA--AAGCT---------------------ATCAGTGTGATTTTGGTA-GCGTTGGGCGAAGGTTCGG----A-----------------------------ACTGATCGAACC-TGTCTCT-----ATTGACGTT-----------------------TTGCTTAG-----CAGGTG----------------TGATGGCAACA-AGTCAATTAGCATATCT---ACC--GC---------AGCGATAAGAAG--------CGTAATTGTCATTACTGAG----------------------------------GTT-CTTTTT-------------------CT--ATGT--------A-CTT------TTTTTATCCAG------AAACCTTGTCAAGTCAGAGGA------GTCGAAGAAGTTGC-------------------------------------------CCAAAATGGAA---GT--AASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
..............................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAAGTCAGAGGA------GTCGAAGAAGT..................................................................2513.00301000020000
................................................................................GTA-GCGTTGGGCGAAGGTT...........................................................................................................................................................................................................................................................................................................................................................................................................................................1912.00200000020000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGTCAAGTCAGAGGA------GT...........................................................................1912.00211000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................AACCTTGTCAAGTCAGAGGA------GTC..........................................................................2312.00201000010000
.........................................................................GATTTTGGTA-GCGTTGGGCGAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................2312.00201000010000
.........................................................................................................................................................CTCT-----ATTGACGTT-----------------------TTGCTTAG-----CA..............................................................................................................................................................................................................................................................................................................................2312.00201000010000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAAGTCAGAGGA------GTCG.........................................................................1811.00101000000000
.....................................................................................................GG----A-----------------------------ACTGATCGAACC-TGTCTCT-----ATT..........................................................................................................................................................................................................................................................................................................................................................................2511.00101000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGAGGA------GTCGAAGAAGTTGC-------------------------------------------CCA.................2411.00101000000000
..................................................................................................TTCGG----A-----------------------------ACTGATCGAACC-TGT......................................................................................................................................................................................................................................................................................................................................................................................2111.00101000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................AACCTTGTCAAGTCAGAGGA------GT...........................................................................2211.00100000010000
.........................................................................GATTTTGGTA-GCGTTGGGCGA................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100000010000
.........................................................................GATTTTGGTA-GCGTTGGGCGAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100000010000
..................................................................................................................................................................ATTGACGTT-----------------------TTGCTTAG-----CAGA............................................................................................................................................................................................................................................................................................................................2111.00100000010000
......................................................................................................G----A-----------------------------ACTGATCGAACC-TGTCT....................................................................................................................................................................................................................................................................................................................................................................................1911.00101000000000
...................................................................................................TCGG----A-----------------------------ACTGATCGAACC-TGTCTCT-----ATT..........................................................................................................................................................................................................................................................................................................................................................................2711.00101000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................CAG------AAACCTTGTCAAGTCAGAGGA------GT...........................................................................2611.00100000010000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGAAGAAGTTGC-------------------------------------------CCAAAATGGAA---......2511.00100000010000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAAGTTGC-------------------------------------------CCAAAATGG...........2011.00100000010000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAAGTCAGAGGA------GTCGAAGAAGTTGC-------------------------------------------C...................2911.00100000010000
..............................................................................................................................................................................................................................................................................................................................................................................................................................CAG------AAACCTTGTCAAGTCAGAGGA------GTC..........................................................................2711.00100000010000
....................................................................................................CGG----A-----------------------------ACTGATCGAACC-TGT......................................................................................................................................................................................................................................................................................................................................................................................1911.00101000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................CTTGTCAAGTCAGAGGA------GTC..........................................................................2011.00101000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAAGTCAGAGGA------GTCGAAGAA....................................................................2311.00100000010000
..................................................................................................................................................ACC-TGTCTCT-----ATTGACGTT-----------------------.............................................................................................................................................................................................................................................................................................................................................1911.00101000000000
.......................................................................GTGATTTTGGTA-GCGTTGGGCGAA...............................................................................................................................................................................................................................................................................................................................................................................................................................................2411.00101000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGA------GTCGAAGAAGTTGC-------------------------------------------C...................1911.00101000000000
...........................................................................................................................................................CT-----ATTGACGTT-----------------------TTGCTTAG-----C...............................................................................................................................................................................................................................................................................................................................2011.00101000000000
......................................................................................GTTGGGCGAAGGTTCGG----A-----------------------------AC....................................................................................................................................................................................................................................................................................................................................................................................................2011.00100100000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCAAGTCAGAGGA------GTCGAAGAAGT..................................................................2611.00100000010000
...............................................................................................AGGTTCGG----A-----------------------------ACTGATCGAACC-.........................................................................................................................................................................................................................................................................................................................................................................................2111.00100100000000
...................................................................................................TCGG----A-----------------------------ACTGATCGAACC-TGTCT....................................................................................................................................................................................................................................................................................................................................................................................2211.00100000010000
............................................................................................................................................GATCGAACC-TGTCTCT-----ATTGACGT.....................................................................................................................................................................................................................................................................................................................................................................2411.00101000000000
..........................................................................................GGCGAAGGTTCGG----A-----------------------------ACTGATCG..............................................................................................................................................................................................................................................................................................................................................................................................2211.00100000010000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAAGTCAGAGGA------GTCGAAGA.....................................................................2211.00101000000000
.....................................................................................................GG----A-----------------------------ACTGATCGAACC-TGTCTCT-----AT...........................................................................................................................................................................................................................................................................................................................................................................2411.00101000000000
.........................................................................................GGGCGAAGGTTCGG----A-----------------------------ACT...................................................................................................................................................................................................................................................................................................................................................................................................1811.00101000000000
..........................................................................................GGCGAAGGTTCGG----A-----------------------------ACTG..................................................................................................................................................................................................................................................................................................................................................................................................1811.00100100000000
........................................................................................TGGGCGAAGGTTCGG----A-----------------------------ACT...................................................................................................................................................................................................................................................................................................................................................................................................1911.00100000010000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAAGAAGTTGC-------------------------------------------CCAAAATGG...........2111.00100000010000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGAGGA------GTCGAAGAAGTTGC-------------------------------------------CC..................2311.00100000010000
.........................................................................GATTTTGGTA-GCGTTGGGCGAAGGTTC..........................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100000010000
.......................................................................GTGATTTTGGTA-GCGTTGGGCGAAGGT............................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00100000010000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGTCAGAGGA------GTCGAAGAAGT..................................................................2211.00101000000000
.........................................................................GATTTTGGTA-GCGTTGGGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100000010000
..................................................................................................................................................................ATTGACGTT-----------------------TTGCTTAG-----CAGGG...........................................................................................................................................................................................................................................................................................................................2211.00100000010000
.................................................................ATCAGTGTGATTTTGGTA-GCGTTGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100100000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGAAGTTGC-------------------------------------------CCAAAATGGA..........2011.00100000010000
..................................................................................................TTCGG----A-----------------------------ACTGATCGAACC-.........................................................................................................................................................................................................................................................................................................................................................................................1811.00101000000000
................................................................................GTA-GCGTTGGGCGAAGGT............................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00101000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGAAGTTGC-------------------------------------------CCAAAATGGAA---GT--..2411.00100000010000
.................................................................................................GTTCGG----A-----------------------------ACTGATCGAACC-TGTCTC...................................................................................................................................................................................................................................................................................................................................................................................2511.00101000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................AG------AAACCTTGTCAAGTCAGAGGA------GTC..........................................................................2611.00101000000000
...........................................................................................................A-----------------------------ACTGATCGAACC-TGTCTCT-----A............................................................................................................................................................................................................................................................................................................................................................................2111.00101000000000
...................................................................................................TCGG----A-----------------------------ACTGATCGAACC-TG.......................................................................................................................................................................................................................................................................................................................................................................................1911.00101000000000
................................................................................................GGTTCGG----A-----------------------------ACTGATCGAACC-TGTCT....................................................................................................................................................................................................................................................................................................................................................................................2511.00101000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGTCAGAGGA------GTCGAAGAAGTTGC-------------------------------------------....................2511.00100000010000
...............................................................................................................................................................................................................................................................................................................................................................................................................................AG------AAACCTTGTCAAGTCAGAGGA------GT...........................................................................2511.00100000010000
..................................................................................A-GCGTTGGGCGAAGGTT...........................................................................................................................................................................................................................................................................................................................................................................................................................................1711.00100000100000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAAGAAGTTGC-------------------------------------------CCAAAATGGAA---......2311.00100000010000
...........................................................................................................A-----------------------------ACTGATCGAACC-TGTCTCT-----ATTG.........................................................................................................................................................................................................................................................................................................................................................................2411.00100000010000
......................................................................................GTTGGGCGAAGGTTCGG----A-----------------------------ACTGATC...............................................................................................................................................................................................................................................................................................................................................................................................2511.00100000010000
...........................................................................................................................................................CT-----ATTGACGTT-----------------------TTGCTTAG-----CAGA............................................................................................................................................................................................................................................................................................................................2311.00101000000000
.........................................................................GATTTTGGTA-GCGTTGGGCGAAGGT............................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100100000000
................................................................................................................................................GAACC-TGTCTCT-----ATTGACGT.....................................................................................................................................................................................................................................................................................................................................................................2011.00100000010000
......................................................................................GTTGGGCGAAGGTTCGG----A-----------------------------ACTGATCG..............................................................................................................................................................................................................................................................................................................................................................................................2611.00100000010000
droSec2
TAAGGCG-----GAAT--------GGCAATAGGAAAA--ATGCT---------------------ATCAGTGTGGTTTTGGTA-ACGTTGGGCGAAGGTTCGG----A-----------------------------ACTGATCGAACC-TGTCTCT-----ATTGACGTT-----------------------TTGCTTAG-----CAGGTG----------------TGATGGCAACA-AGTCAATTAGCATATCT---ATT--CC---------ACCGATAAGAAG--------CGTAATTTTCATTACTGAG----------------------------------GTT-CTTTTA-------------------CC--ATGT--------A-TTT------TTTTTATCCAG------AAACCTTGTCAAATCAGAGGA------GTCGAAGAAATTAC-------------------------------------------CCAAAATGGAA---GT--AASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
...............................................................................GGTA-ACGTTGGGCGAAGGT............................................................................................................................................................................................................................................................................................................................................................................................................................................1913.0030210
..................................................................................A-ACGTTGGGCGAAGGTTCGG----....................................................................................................................................................................................................................................................................................................................................................................................................................................2012.0020110
...................................................................................................TCGG----A-----------------------------ACTGATCGAACC-TGTCTCT-----.............................................................................................................................................................................................................................................................................................................................................................................2411.0011000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGA------GTCGAAGAAATTAC-------------------------------------------CCAAAAT.............2511.0010010
................................................................................GTA-ACGTTGGGCGAAGGTTCG.........................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010010
....................................................................AGTGTGGTTTTGGTA-ACGTTGGGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010100
....................................................................................................................................................C-TGTCTCT-----ATTGACGTT-----------------------TTGCTTAG-----CA..............................................................................................................................................................................................................................................................................................................................2711.0011000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAAATCAGAGGA------GTCGA........................................................................1911.0010010
....................................................................................................CGG----A-----------------------------ACTGATCGAACC-TGT......................................................................................................................................................................................................................................................................................................................................................................................1911.0011000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................AATCAGAGGA------GTCGAAGAAATTAC-------------------------------------------CC..................2611.0011000
.................................................................................TA-ACGTTGGGCGAAGGTTCGG----A-----------------------------A.....................................................................................................................................................................................................................................................................................................................................................................................................2311.0010100
..........................................................................GTTTTGGTA-ACGTTGGGCGAAGGTTCG.........................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010100
...........................................................................................GCGAAGGTTCGG----A-----------------------------ACTGATCGAA............................................................................................................................................................................................................................................................................................................................................................................................2311.0010100
................................................................................GTA-ACGTTGGGCGAAGGT............................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010010
..................................................................................................................................................ACC-TGTCTCT-----ATTGACGT.....................................................................................................................................................................................................................................................................................................................................................................1811.0010010
.....................................................................................................GG----A-----------------------------ACTGATCGAACC-TGT......................................................................................................................................................................................................................................................................................................................................................................................1811.0010010
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGAAGAAATTAC-------------------------------------------CCAAAATGGAA---GT--..2711.0010010
..........................................................................................GGCGAAGGTTCGG----A-----------------------------ACTGATCGAA............................................................................................................................................................................................................................................................................................................................................................................................2411.0010100
...............................................................................................AGGTTCGG----A-----------------------------ACTGATCGAA............................................................................................................................................................................................................................................................................................................................................................................................1911.0011000
..................................................................................A-ACGTTGGGCGAAGGTTCG.........................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010010
droSim2
TAAGGTG-----GAAT--------GGCAATAGGAAAA--AAGCT---------------------ATCAGTGTGGTTTTGGTA-ACGTTGGGCGAAGGTTCGG----A-----------------------------ACTGATCGAACC-TGTCTCT-----ATTGACGTT-----------------------TTGCTTAG-----CAGGTG----------------TGATGGCAACA-AGTCAATTAGCATATCT---ATT--CC---------ACCGATAAGAAG--------CGTAATTGTCATTACTGAG----------------------------------GTT-CTTTTA-------------------CC--AAGT--------A-TTT------TTTTTATCCAG------AAACCTTGTCAAATCAGAGGA------GTCGAAGAAGTTAC-------------------------------------------CCAAAATGGAA---GT--AASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
..................................................................................................TTCGG----A-----------------------------ACTGATCGAACC-T........................................................................................................................................................................................................................................................................................................................................................................................1913.00330000000000000000
....................................................................................................CGG----A-----------------------------ACTGATCGAACC-TGTCT....................................................................................................................................................................................................................................................................................................................................................................................2113.00303000000000000000
..................................................................................................TTCGG----A-----------------------------ACTGATCGAACC-.........................................................................................................................................................................................................................................................................................................................................................................................1812.00220000000000000000
................................................................................................GGTTCGG----A-----------------------------ACTGATCGAAC...........................................................................................................................................................................................................................................................................................................................................................................................1911.00100010000000000000
.............................................................................................GAAGGTTCGG----A-----------------------------ACTGATCGA.............................................................................................................................................................................................................................................................................................................................................................................................2011.00101000000000000000
..............................................................................TGGTA-ACGTTGGGCGAAGGTTC..........................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100000000000100000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCAGAGGA------GTCGAAGAAGTTAC-------------------------------------------....................2311.00100010000000000000
........................................................................................................................................................................GTT-----------------------TTGCTTAG-----CAGGTG----------------TGAT......................................................................................................................................................................................................................................................................................................2111.00100010000000000000
................................................................................................GGTTCGG----A-----------------------------ACTGATCGAA............................................................................................................................................................................................................................................................................................................................................................................................1811.00110000000000000000
.....................................................................................CGTTGGGCGAAGGTTCGG----A-----------------------------ACTGATCG..............................................................................................................................................................................................................................................................................................................................................................................................2711.00100010000000000000
............................................................................................................................................GATCGAACC-TGTCTCT-----ATTGACGT.....................................................................................................................................................................................................................................................................................................................................................................2411.00100010000000000000
...............................................................................................AGGTTCGG----A-----------------------------ACTGATCGAAC...........................................................................................................................................................................................................................................................................................................................................................................................2011.00100100000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCAAATCAGAGGA------GTCGAAGAAGTT.................................................................2711.00100000000000010000
............................................................................TTTGGTA-ACGTTGGGCGAAGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................2111.00100010000000000000
................................................................................GTA-ACGTTGGGCGAAGGTTCGG----A-----------------------------ACT...................................................................................................................................................................................................................................................................................................................................................................................................2611.00101000000000000000
.........................................................................................GGGCGAAGGTTCGG----A-----------------------------ACTGATCGAAC...........................................................................................................................................................................................................................................................................................................................................................................................2611.00101000000000000000
...........................................................................................................A-----------------------------ACTGATCGAACC-TGTCTCT-----ATTGA........................................................................................................................................................................................................................................................................................................................................................................2511.00101000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAAATCAGAGGA------GTCGAAGAAGT..................................................................2511.00101000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGAAGAAGTTAC-------------------------------------------CCAAAATGGAA---GT--AA2911.00100010000000000000
......................................................................................................G----A-----------------------------ACTGATCGAACC-TGTCTCT-----ATTGAC.......................................................................................................................................................................................................................................................................................................................................................................2711.00100010000000000000
...............................................................................................AGGTTCGG----A-----------------------------ACTGATCGA.............................................................................................................................................................................................................................................................................................................................................................................................1811.00100100000000000000
.................................................................................TA-ACGTTGGGCGAAGGTTCGG----A-----------------------------......................................................................................................................................................................................................................................................................................................................................................................................................2211.00110000000000000000
....................................................................................................CGG----A-----------------------------ACTGATCGAACC-TG.......................................................................................................................................................................................................................................................................................................................................................................................1811.00100010000000000000
..................................................................................A-ACGTTGGGCGAAGGTTC..........................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00101000000000000000
....................................................................................................CGG----A-----------------------------ACTGATCGAACC-TGTCTC...................................................................................................................................................................................................................................................................................................................................................................................2211.00101000000000000000
....................................................................................................CGG----A-----------------------------ACTGATCGAACC-TGTCC....................................................................................................................................................................................................................................................................................................................................................................................2111.00101000000000000000
..........................................................................................GGCGAAGGTTCGG----A-----------------------------ACTGATC...............................................................................................................................................................................................................................................................................................................................................................................................2111.00101000000000000000
.............................................................................................GAAGGTTCGG----A-----------------------------ACTGATC...............................................................................................................................................................................................................................................................................................................................................................................................1811.00101000000000000000
...................................................................................................TCGG----A-----------------------------ACTGATCGAACC-G........................................................................................................................................................................................................................................................................................................................................................................................1811.00101000000000000000
..................................................................................A-ACGTTGGGCGAAGGTTCGG----A-----------------------------ACT...................................................................................................................................................................................................................................................................................................................................................................................................2411.00100010000000000000
...................................................................................................TCGG----A-----------------------------ACTGATCGAACC-T........................................................................................................................................................................................................................................................................................................................................................................................1811.00101000000000000000
....................................................................................................CGG----A-----------------------------ACTGATCGAACC-TGTC.....................................................................................................................................................................................................................................................................................................................................................................................2011.00110000000000000000
dm3
TAAGGTG-----AAAT--------GGCAATAGGAAAA--AAGGT---------------------ATCAGTGTGGTTTTGGTA-ACGTTGGGCGAAGGTTCGG----A-----------------------------ACTGATCGAACC-TGTCTCT-----ATTGACGTT-----------------------TTGCTTAG-----CAGGTG----------------TGATAGCAACA-AGTCAATTAGCATATCT---ATT--CC---------ACCGATAAGAAG--------CGTAATTGTCATTGCTGAG----------------------------------GTT-CTCTTA-------------------CC--ATGT--------ATTTT------TTTTTATCCAG------AAACCTTGTCAAATCGGAGGA------GTCGAAGAAGTTAC-------------------------------------------CCAAAATGGAA---GT--AASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
................................................................................GTA-ACGTTGGGCGAAGGTT...........................................................................................................................................................................................................................................................................................................................................................................................................................................1913.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
...........................................................................................................A-----------------------------ACTGATCGAACC-TGTCTCT-----ATT..........................................................................................................................................................................................................................................................................................................................................................................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................CGG----A-----------------------------ACTGATCGAACC-TGT......................................................................................................................................................................................................................................................................................................................................................................................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................CGTTGGGCGAAGGTTCGG----....................................................................................................................................................................................................................................................................................................................................................................................................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000010000000
...............................................................................GGTA-ACGTTGGGCGAAGGTTCG.........................................................................................................................................................................................................................................................................................................................................................................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................A-ACGTTGGGCGAAGGTTCGG----....................................................................................................................................................................................................................................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000
....................................................................AGTGTGGTTTTGGTA-ACGTTGG....................................................................................................................................................................................................................................................................................................................................................................................................................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001010000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAAGAAGTTAC-------------------------------------------CCAAAATGGAA---GT--A.2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................ATCGGAGGA------GTCGAAGAA....................................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................A-ACGTTGGGCGAAGGTTCG.........................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................TTGGGCGAAGGTTCGG----A-----------------------------ACT...................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000
...............................................................................GGTA-ACGTTGGGCGAAGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
.....................................................................................................GG----A-----------------------------ACTGATCGAACC-TGTCT....................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
....................................................................................................CGG----A-----------------------------ACTGATCGAACC-TGATC....................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................A-ACGTTGGGCGAAGGTTCGG----A-----------------------------A.....................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................CGTTGGGCGAAGGTTCGG----A-----------------------------ACTGA.................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................ACCTTGTCAAATCGGAGGA------GTCGA........................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................ACGTTGGGCGAAGGTTCGG----....................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................GATCGAACC-TGTCTCT-----ATTGACGTT-----------------------T............................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................TTTTGGTA-ACGTTGGGCGAAGGT............................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
.............................................................................TTGGTA-ACGTTGGGCGAAGGT............................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................TCGG----A-----------------------------ACTGATCGAACC-TGTCTCT-----.............................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................ATCAGTGTGGTTTTGGTA-AC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
...........................................................................................GCGAAGGTTCGG----A-----------------------------ACTGAT................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................TTTGGTA-ACGTTGGGCGAAGGTTC..........................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
.............................................................................TTGGTA-ACGTTGGGCGAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................CGG----A-----------------------------ACTGATCGAACC-TGTCT....................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................GTTGGGCGAAGGTTCGG----....................................................................................................................................................................................................................................................................................................................................................................................................................................1711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................TTGGGCGAAGGTTCGG----A-----------------------------ACTGA.................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................GTTGGGCGAAGGTTCGG----A-----------------------------......................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000
.................................................................................TA-ACGTTGGGCGAAGGTTATC----....................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................ACCTTGTCAAATCGGAGGA------GTC..........................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
........................................................................................TGGGCGAAGGTTCGG----A-----------------------------ACTGATCGA.............................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
....................................................................................................CGG----A-----------------------------ACTGATCGAACC-TGTCTCT-----ATTGA........................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................ACC-TGTCTCT-----ATTGACGTT-----------------------TTG..........................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................GTTGGGCGAAGGTTCGG----A-----------------------------ACTG..................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................TTAG-----CAGGTG----------------TGATAGCAACA-AGTCAA........................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................TGGTA-ACGTTGGGCGAAGGT............................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
......................................................................................GTTGGGCGAAGGTTCGG----A-----------------------------ACTGATC...............................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
.......................................................................GTGGTTTTGGTA-ACGTTGGGCGA................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
.....................................................................................CGTTGGGCGAAGGTTCGG----A-----------------------------ACTGAT................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCGAAGAAGTTAC-------------------------------------------CCAAAATGGAA---......2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
...........................................................................................GCGAAGGTTCGG----A-----------------------------ACTGATT...............................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
.....................................................................................................GG----A-----------------------------ACTGATCGAACC-TGT......................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000
................................................................................................GGTTCGG----A-----------------------------ACTGATCGA.............................................................................................................................................................................................................................................................................................................................................................................................1711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................TA-ACGTTGGGCGAAGGTTCGG----....................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................ACCTTGTCAAATCGGAGGA------GT...........................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................TGGTA-ACGTTGGGCGAAGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................ACGTTGGGCGAAGGTTCGG----A-----------------------------A.....................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000
................................................................................GTA-ACGTTGGGCGAAGGT............................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................CGG----A-----------------------------ACTGATCGAACC-TGTCTCT-----AT...........................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAGGA------GTCGAAGAAGTTAC-------------------------------------------C...................2111.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................GGTA-ACGTTGGGCGAAGGTT...........................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
.......................................................................................TTGGGCGAAGGTTCGG----A-----------------------------ACTGAT................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000
...............................................................................GGTA-ACGTTGGGCGAAGGTTC..........................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
..................................................................................A-ACGTTGGGCGAAGGTTCGG----A-----------------------------ACTGAT................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
.........................................................................................................................................ACTGATCGAACC-TGTCTCT-----AT...........................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGA------GTCGAAGAAGTTAC-------------------------------------------CCAAAA..............2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................GACGTT-----------------------TTGCTTAG-----CAGA............................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................TTGGGCGAAGGTTCGG----A-----------------------------ACTGAAT...............................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000
..........................CAATAGGAAAA--AAGGT---------------------AGG...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................1920.5010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEug1
TAAGGTG-----GAATGCGATATTGGCATATGAAAAA--TAGGA---------------------ATCAGTGTGATTTTGGTA-ACGTTAGACGAAGGTTCGA----A-----------------------------ATTGATCGGGCCCAAACTCT-----ATTGACGTT-----------------------TTTCTGTG-----CAGGTGT--------------GTGATGACAACA-AGTCAATTAGCATATCT---CTA--CC--------TGCTGATAAGAA----------GTAATTGTAATTACTTTG----------------------------------GTT-TCATTTCGAT--TTGT---------TT--------CT-----TTTT------TTTTTATCCAG------AAACCTTGTCAAATCAGAGGA------GTCAAAGAAGTTAC-------------------------------------------CCAAAATGGAA---GT--AASizeHit CountTotal NormTotal
No Reads
droBia1
TAAGGTG-----CAAC--------AGCAGTACGAAAA--TTGGA---------------------ATCAGTGTGATTTTGGTA-ACGTCGGCCGAAGGTTCGG----A-----------------------------ACTGATCGAACC-TGTCTCT-----ATTGACGTT-----------------------TTGCTTAG-----CAGGTG----------------TGATGGCAACA-AGTCAATTAGCATATCT---GCC--CC---------ACTGATAAAGAG--------CCTAATTGTAATTATTGGG----------------------------------GTT-TCTTTT-------------------TT--------CT-----CTAT------GTGCTATCCAG------AAACCTTGTCAAATCGGAGGA------GTCGAAGAAGTTGC-------------------------------------------CCAAAATGGAA---AC--AASizeHit CountTotal NormTotal
No Reads
droTak1
TAAGGGG-----CGAT--------GGAAATACGACAAAATTGGA---------------------ATCAGTGTGATTTTGGTA-ACGTTGGGCGAAGGTTCGA----A-----------------------------ACCGATCGAACC-TGTCTCT-----ATTGACGTT-----------------------TTTCCAAG-----CAGGTG----------------TGATGGCAACA-AGTCAATTAGCATATCT---CAA--CT---------GCTGATAAGAGG--------CGTAATTATAATTACTGAG----------------------------------GTT-TAT----------------------------------------TTT------TTTCTATCCAG------AAACCTTGTCAAATCAGAGGA------GTTGAAGAAGTTGC-------------------------------------------CCAAAATGGAA---GT--AASizeHit CountTotal NormTotal
No Reads
droEle1
TAAGGTG-----CAAT--------GGCAATACCAAAA--TTGAA---------------------ATCAGTGTGATTTTGGTA-GCGTCGGGCGAAGGTTCGA----A-----------------------------ACTGATCGAACC-TGTCTCT-----ATTGACGTT-----------------------TTGCAGAG-----CAGGTG----------------TGATGGCAACA-AGTCAATTAGCATATCACATATC--GT---------ACTGATAAGAAG--------CGCAATTGTAATTACCGAGCTT-----------------------------TCGTT-TTTTTT-------------------C-------GA-------TTTT------TTTTTATCCAG------AAACCTTGTCAAATCAGAGGA------GCCGAAGAAGTTAC-------------------------------------------CCAAAATGGAA---GT--AASizeHit CountTotal NormTotal
No Reads
droRho1
TAAGGAG-----AAAT--------GGGAATACGAAAA--TTGGA---------------------ATCAGTGTGATTTTGGTA-GCGTCGGGCGAAGGTTCGG----A-----------------------------ACTGATCGAACC-TGTCTCT-----ATTGACGTT-----------------------TTGGTGAG-----CAGGTG----------------TGATGGCAACA-AGTCAATTAGCATATCA-----C--CT---------ACTGATAAGAAG--------CGTAATTGTAATTACTGAG----------------------------------GTG-TCGTTT--------TT-------TTC-------GATT-----TTCA------TTTATATCCAG------AAACCTTGTCAAATCAGAGGA------GCCGAAGAAGTTGC-------------------------------------------CCAAAATGGAAAATGG--AASizeHit CountTotal NormTotal
No Reads
droFic1
TAAGGTG-----CAAT--------GGCAGTAGAGAAA--TCGGA---------------------ATCAGTGTGATTTTGGTA-ACGTTGGGCGAAGGTTCGG----G-----------------------------ACTGATCGAACC-TGTCTCGATTCGATTGACGTT-----------------------TTGCATAG-----CAGGTG----------------CGATGGCAACA-AGTCAATTAACATATCA-----C--CA---------ACTGATAAGAAG--------CGTAATTATAATTACTAAG----------------------------------GTTTCTTTTT-------------------TC--ATGT----CGTTC-TTT------TTTTTATCCAG------AAACCTTGTCAAATCAGAGGA------GTCGAAGAAGTTGC-------------------------------------------CCAAAATGGAA---GC--GASizeHit CountTotal NormTotal
No Reads
droKik1
TAAGG-G-----TTAT--------GGCAAAAAAGGAAAATTAGA------GCCAT-C--------ATCAGTGTGATTTTGGTA-ACGTTCGGTGAAGGTTCGGCGGTA-----------------------------ACTGATCGAACC-TGTCTC---------------------------------------------------CAGGTG----------------TGAAGGCAGCA-AATCAATTAGCATATCT-----C--CA---------ACTGATAAGAAAAG-T----CGTAATTGTAATTAACCAG----------------------------------CTT-T----A---CCTTTGT-------TTC-------GTTT-----TTCT------TTTTTATCCAG------AAGTCTTGTCAAAGCAGAAGAGCAGCAGTCAAAGAAGTTGC-------------------------------------------CCAAAATGGAG---GT--TASizeHit CountTotal NormTotal
No Reads
droAna3
TAAGG-------GAAT--------GGCAATACGAAAA--TTAGA------AGTG-CCGGGGGGAAATCAGTATGATTTTGGTA-TCGCTGGGCGAAGGTTCGG---GA-----------------------------ATCGATCGAACC-TGTCGCC-----GTTGACATT-----------------------CCGCTTAG-----CAGGTG----------------TGATGGCAACA-AGTCAATTAGCATATAT-----CGCCG----GT-GGGCCGATAAGAAA---T----CGTAATTATAATTATGGTAT-------------------------------------------------TTGTGTGTTCTT-TT--------CT-----TTTG------CTTTTATCCAG------AAACCTTGTCAAATCAGAGGA------GCCGAAAAAGGTGG-------------------------------------------CCAAAATGGAA---GC--TASizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
....................................................................................................CGG---GA-----------------------------ATCGATCGAACC-TGTCGCC-----GTT..........................................................................................................................................................................................................................................................................................................................................................................2711.001100000
..................................................................................................TTCGG---GA-----------------------------ATCGATCGAACC-TGTCGC...................................................................................................................................................................................................................................................................................................................................................................................2511.001010000
............................................................................................................................................................C-----GTTGACATT-----------------------CCGCTTAG-----CAGA............................................................................................................................................................................................................................................................................................................................2211.001010000
...............................................................................GGTA-TCGCTGGGCGAAGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001100000
......................................................................................................G---GA-----------------------------ATCGATCGAACC-TGTCGC...................................................................................................................................................................................................................................................................................................................................................................................2111.001010000
...................................................................................................TCGG---GA-----------------------------ATCGATCGAACC-TGTCGCC-----.............................................................................................................................................................................................................................................................................................................................................................................2511.001010000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAAAAAGGTGG-------------------------------------------CCAAAAT.............1911.001000010
.......................................................................................................................................................................................................................................................................................................................................................................................CTT-TT--------CT-----TTTG------CTTTTATC.................................................................................................................1911.001010000
.................................................................................................GTTCGG---GA-----------------------------ATCGATCGAACC-TGTCGCC-----GT...........................................................................................................................................................................................................................................................................................................................................................................2911.001010000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAAATCAGAGGA------GCCGAAAAAGGTG................................................................2711.001100000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................AAACCTTGTCAAATCAGAGGA------GCC..........................................................................2411.001010000
droBip1
TAAGG-------GAAT--------GGCAATACGAAAA--TTGGA------AGTG-CCGGGGGGAAATCAGTATGATTTTGGTA-TCGCTGGGCGAAGGTTCGG---GA-----------------------------ATCGATTGAACC-TGTCTCC-----GTTGACATT-----------------------CCGGTGAG-----CAGGTG---------------GTGATGGCAACA-AGTCAATTAGCATATAT-----C--GC---AACC-CGCCGATAAGAATTC-CTATAAGTAATTATAATTATGGTAT-------------------------------------------------TTGT-------------GT------------GTT------CTTTTATCCAG------AAACCTCGTCAAATCAGAGGA------GCCGAAAAAGGTGG-------------------------------------------CCAAAATGGAG---GC--TASizeHit CountTotal NormTotal
No Reads
dp5
TAAGGTGCTTCGGAAT--------GGCAAAGAGT------T---ATAG-AGAAAT----------GTCAGTGTTATTTTGGAA-ACGTTAGGCACAGGTTCGA---TC-----------------------------GACGACAAAACC-TGTCTCA-----ACTGACATTCAATTTCCGATTTGCGTTCGTTGTTGCTCAGCCAGCCAGGTGCGGAGAGGGGCCACA--GGCAGAAACAGAGCCAATTAGCATATCA---GAG--A--------GTACCGATAAGCAGAGCC----CATAATTATGATTACTCAAATTACTCGATTTGTTGACTGATTGAA--------GTT-CTTTCT-------------------C----T--GA----CTC-TTTTCTCTGCCTCCCCACAG------AACCATTGTCAAGCCGGAGGA------GCTGAAAAAATTGC------------AAGCACC-------------------GACGTCCAATATGGAG---GC--TASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.........................................................................................AGGCACAGGTTCGA---TC-----------------------------GA....................................................................................................................................................................................................................................................................................................................................................................................................1812.0020200000000
........................................................................TTATTTTGGAA-ACGTTAGGCA.................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
.........................................................................................AGGCACAGGTTCGA---TC-----------------------------GAC...................................................................................................................................................................................................................................................................................................................................................................................................1911.0010100000000
........................................................................................................................................................................ATTCAATTTCCGATTTGCGTT..................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
.................................................................................................GTTCGA---TC-----------------------------GACGACAAAACC-T........................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................AACCATTGTCAAGCCGGAGG....................................................................................2011.0010100000000
.................................................................................................GTTCGA---TC-----------------------------GACGACAAAACC-TGTCTC...................................................................................................................................................................................................................................................................................................................................................................................2611.0010100000000
.....................................................................................................................................................................GACATTCAATTTCCGATTTGCGTTCGTT..............................................................................................................................................................................................................................................................................................................................................2811.0010100000000
........................................................................................................................................................................ATTCAATTTCCGATTTGCGTTCGTTGTT...........................................................................................................................................................................................................................................................................................................................................2811.0010100000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCACC-------------------GACGTCCAATATGGAG---......2211.0010000010000
..............................................................................................................................................................................................................................................................................................................................................................................................................................CAG------AACCATTGTCAAGCCGGAGGA------.............................................................................2411.0010010000000
.................................................................................................................................................................................CCGATTTGCGTTCGTTGTT...........................................................................................................................................................................................................................................................................................................................................1911.0010100000000
.......................................................................................................................................................................CATTCAATTTCCGATTTGCGTTCGT...............................................................................................................................................................................................................................................................................................................................................2511.0010100000000
..................................................................................................................................................................................CGATTTGCGTTCGTTGTTGCTCAGCC...................................................................................................................................................................................................................................................................................................................................2611.0010100000000
.......................................................................GTTATTTTGGAA-ACGTTAGGCA.................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010100000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACC-------------------GACGTCCAATATGGAG---G.....2211.0010000100000
.......................................................................GTTATTTTGGAA-ACGTTAGGCACAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010100000000
.......................................................................GTTATTTTGGAA-ACGTTAGGCACA...............................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010100000000
........................................................................................................................................................................ATTCAATTTCCGATTTGCGTTCGTT..............................................................................................................................................................................................................................................................................................................................................2511.0010100000000
..........................................................................................GGCACAGGTTCGA---TC-----------------------------GAC...................................................................................................................................................................................................................................................................................................................................................................................................1811.0010100000000
..........................................................................................................................................................................................GTTCGTTGTTGCTCAGCCA..................................................................................................................................................................................................................................................................................................................................1911.0010100000000
...................................................................................................TCGA---TC-----------------------------GACGACAAAACC-TGT......................................................................................................................................................................................................................................................................................................................................................................................2111.0010100000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCAAGCCGGAGGA------GCT..........................................................................1811.0010000100000
.............................................................................................................................................................................................................................GGCCACA--GGCAGAAACAGA.............................................................................................................................................................................................................................................................................................1911.0010100000000
droPer2
TAAGGTGCTTCGGAAT--------GGCAAAGAGGT---------ATAG-AGAAAT----------GTCAGTGTTATTTTGGAA-ACGTTAGGCAAAGGTTCGA---TC-----------------------------GGCGACAGAACC-TGTCTCA-----ACTGACATTCAATTTCCGATTTGCGTTCGTTGTTGCTCAGCCAGCCAGGTGCGGAGAGGGGCCACA--GGCAGAAACAGAGCCAATTAGCATATCA---GAG--A--------GTACCGATAAGCAGAGCC----CATAATTATGATTACTCAAATTACTCGATTTGTTGACTGATTGAA--------GTT-CTTTCT-------------------C----T--GA----CTC-TTTTCTCTGCCTCCCCACAG------AACCATTGTCAAGCCGGAGGA------GCTGAAAAAATTGC------------AAGCACC-------------------GACGTCCAATATGGAG---GC--TASizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
......................................................................................GTTAGGCAAAGGTTCGA---TC-----------------------------GGCGACA...............................................................................................................................................................................................................................................................................................................................................................................................2611.001000001
..............................................................................................................................................................................................GTTGTTGCTCAGCCAGCCA..............................................................................................................................................................................................................................................................................................................................1911.001010000
.................................................................................................................................................................................................................................................................................................................................................TTGAA--------GTT-CTTTCT-------------------C----T--GA----CT....................................................................................................................................2011.001100000
.....................................................................................................GA---TC-----------------------------GGCGACAGAACC-TG.......................................................................................................................................................................................................................................................................................................................................................................................1811.001100000
..............................................................................................................................................................................................................................................................................................................................................................................................................................CAG------AACCATTGTCAAGCCGGAGG....................................................................................2311.001100000
.................................................................................AA-ACGTTAGGCAAAGGTT...........................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001010000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACC-------------------GACGTCCAATATGGAG---GC--..2311.001001000
..............................................................................................................................................................................................................................................................................................................................TACTCGATTTGTTGACTGG..............................................................................................................................................................................................1911.001100000
droWil2
TAAGAACCT---GAAT--------GGCAAAAACAAAA--AATCCATTAGAACGC-TCTTGGCCCAATCAGTGTTATTTTGGAG-ACGTAAGGCAAAGGTTCGA---ATAA---AGAATTTTTCGCGCA---------G------------------C-----ACTGACTTGCAATATACAAT-----------------ACA-----TAGGTG----------------GGAATTGTTGA-ACACAATTAGCATA------------------------CGATAAGAATGG-CCAT-AATAATTATAATTACTCAAT-------GTGTGATGACTGATTGACAATGTTTGGTT-TTTTTTC------------------TTTTCT--GT--TTTTC--TTTTTTTGTTATTTCACAG------AACCGTAGTTAAAGCCGAGAA------GTTACCACAACAAC------------AA-------CAGCAGCAACAGTTGCCGATGTCCAAAATGGAA---GC--TASizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.........................................................................TATTTTGGAG-ACGTAAGGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................1912.00200200
..........................................................................................................ATAA---AGAATTTTTCGCGCA---------G------------------C-----.............................................................................................................................................................................................................................................................................................................................................................................2111.00100010
.......................................................................GTTATTTTGGAG-ACGTAAGG...................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100100
.....................................................................GTGTTATTTTGGAG-ACGTAAGGC..................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00101000
................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAAGCCGAGAA------GTTACCAC.....................................................................2011.00100010
......................................................................................GTAAGGCAAAGGTTCGA---ATAA---AGA...........................................................................................................................................................................................................................................................................................................................................................................................................................2411.00100100
..........................................................................ATTTTGGAG-ACGTAAGGCAAAGGTT...........................................................................................................................................................................................................................................................................................................................................................................................................................................2511.00100100
.........................................................................TATTTTGGAG-ACGTAAGGCAAAG..............................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100100
................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAAGCCGAGAA------GTTACCACAAC..................................................................2311.00100100
..........................................................................................................................CGCGCA---------G------------------C-----ACTGACTTGC...................................................................................................................................................................................................................................................................................................................................................................1811.00100010
...........................................................................TTTTGGAG-ACGTAAGGCAAAGGT............................................................................................................................................................................................................................................................................................................................................................................................................................................2311.00100100
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAAC------------AA-------CAGCAGCAACA...............................19200.05100010
droVir3
TAACGGC-----TAAT--------GGCAAACGGCAAA--CGGCAATCG-GCGAACGTTTGGGCCAACTAGTTCAATTTCGAAAGGCGAAAGGCAAAGGTTTGC---GGGGTTGCATATAATTTGCACAGCGTTTGAAATCAA------------GCA-----GCTGACGGGCAAATTTCCGTT-----------TGCTGTAG-----CGACAG----------------GTTCGGAAACG-TTTCAATTAACATACAT---ATA--T-----ACA-ATTTGATAAAGCG--CC----AATCATTCTAATTACCCAC----------------------------------TGT-GA-------TATAT-----------AC--CT------------GTC------TCTCTACCCAACAGTCAACCGAGTGCGATTGCGGAGGA------GCTAAAGAAGTTACCGAACTACGTGCAACCAGCGAGGGTGACGAAGGCGAC-CACTGCCAAAATGGAA---GCCCAASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
......................................................................................GAAAGGCAAAGGTTTGC---GGGGTT...............................................................................................................................................................................................................................................................................................................................................................................................................................2312.002001100000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................GATTGCGGAGGA------GCTAAAGAAGT..................................................................2311.001000000000000000000100000000000000000000000000000000000000000000
...............................................................................GAAAGGCGAAAGGCAAAGGTTTGC---.....................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000000000000000000000000000000000000000000000000000000000000010
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGAGGGTGACGAAGGCGA...........................1811.001000000001000000000000000000000000000000000000000000000000000000
......................................................................................................................................GAAATCAA------------GCA-----GCTGACGGG....................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000001000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGTGCAACCAGCGAGGGT......................................1911.001000000000000000000000000000001000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................CAACCGAGTGCGATTGCGGAGG....................................................................................2211.001000000000000000000000010000000000000000000000000000000000000000
...........................................................................................................................GCACAGCGTTTGAAATCAA------------GCA-----GCTG.........................................................................................................................................................................................................................................................................................................................................................................2611.001000100000000000000000000000000000000000000000000000000000000000
......................................................................................GAAAGGCAAAGGTTTGC---GGGGTTGC.............................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000000000000000001000000000000000000000000000000000000000000000
.....................................................................................CGAAAGGCAAAGGTTTGC---GGGGCGC..............................................................................................................................................................................................................................................................................................................................................................................................................................2511.001000100000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................AAATTTCCGTT-----------TGCTGTAG-----CGA.............................................................................................................................................................................................................................................................................................................................2211.001001000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................ATTTCCGTT-----------TGCTGTAG-----CGACAG----------------TC........................................................................................................................................................................................................................................................................................................2511.001001000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................CAACCGAGTGCGATTGCGGAGGA------G............................................................................2411.001000000000000000001000000000000000000000000000000000000000000000
......................................................................................GAAAGGCAAAGGTTTGC---GGG..................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000010000000000000000000000000000000000000000000
......................................................................................................................................GAAATCAA------------GCA-----GCTGACG......................................................................................................................................................................................................................................................................................................................................................................1811.001001000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................TGAAATCAA------------GCA-----GCTGACGGGC...................................................................................................................................................................................................................................................................................................................................................................2211.001000100000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................CCGAGTGCGATTGCGGAGG....................................................................................1911.001000000000000000000000000000000000000000100000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTAAAGAAGTTACCGAACTACGTGC...................................................2511.001000000000000000000000000000000000000000000000000000000000000010
.......................................................................................AAAGGCAAAGGTTTGC---GGGG.................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000100000000000000000000000000000000000000000000000000000000000
..................................................................................................TTTGC---GGGGTTGCATATA........................................................................................................................................................................................................................................................................................................................................................................................................................1811.001000000000000001000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACGTGCAACCAGCGAGGGTGAC...................................2311.001001000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACCGAACTACGTGCAACCAGC............................................2211.001000000000000000000000000000001000000000000000000000000000000000
.............................................................................................................................ACAGCGTTTGAAATCAA------------GCA-----.............................................................................................................................................................................................................................................................................................................................................................................2011.001001000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACCAGCGAGGGTGACGAAGGC.............................2211.001000100000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAACCAGCGAGGGTGACGAAGGC.............................2311.001001000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................AATTTCCGTT-----------TGCTGTAG-----CGAC............................................................................................................................................................................................................................................................................................................................2211.001000000000000000010000000000000000000000000000000000000000000000
...........................................................................................GCAAAGGTTTGC---GGGGTTGC.............................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000100000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AC-CACTGCCAAAATGGAA---GCCCA.2311.001001000000000000000000000000000000000000000000000000000000000000
.......................................................................................AAAGGCAAAGGTTTGC---GGGGTTGC.............................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000000000000000000000000000000000000000000000000000000000001000
................................................................................................................GCATATAATTTGCACAGCGTTTGAA......................................................................................................................................................................................................................................................................................................................................................................................................2511.001000000000000001000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................CGAGTGCGATTGCGGAGGA------.............................................................................1911.001000000000000000000000000000001000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................CAACCGAGTGCGATTGCGGA......................................................................................2011.001000000000000000100000000000000000000000000000000000000000000000
..................................................................................................................................................................................CCGTT-----------TGCTGTAG-----CGACA...........................................................................................................................................................................................................................................................................................................................1811.001001000000000000000000000000000000000000000000000000000000000000
........................................................................CAATTTCGAAAGGCGAAA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001000000000000000001000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGAAGTTACCGAACTACGTGC...................................................2211.001000000000000000100000000000000000000000000000000000000000000000
..........................................................................................GGCAAAGGTTTGC---GGGGTTGC.............................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000100000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................GGGCAAATTTCCGTT-----------TGCTGTAG-----CGACA...........................................................................................................................................................................................................................................................................................................................2811.001001000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................TGAAATCAA------------GCA-----GCTGAC.......................................................................................................................................................................................................................................................................................................................................................................1811.001000100000000000000000000000000000000000000000000000000000000000
..................................................................................AGGCGAAAGGCAAAGGTTTGC---.....................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000010
....................................................................................................................................................................................................................................................................................................................................................................................................................................TCAACCGAGTGCGATTGCGGA......................................................................................2111.001000000000000000000100000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTACGTGCAACCAGCGAGG........................................1911.001001000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................GTCAACCGAGTGCGATTGCGGAGGA------.............................................................................2511.001001000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................AACCGAGTGCGATTGCGGAGGA------.............................................................................2211.001000000000000000000000000000001000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTGCGGAGGA------GCTAAAGA.....................................................................1911.001001000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACCAGCGAGGGTGACGAAGGCGAC-.........................2511.001000000000000001000000000000000000000000000000000000000000000000
...................................................................................................................TATAATTTGCACAGCGTTTGAAATCAA------------.....................................................................................................................................................................................................................................................................................................................................................................................2711.001001000000000000000000000000000000000000000000000000000000000000
................................................................................AAAGGCGAAAGGCAAAGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................1820.501001000000000000000000000000000000000000000000000000000000000000
droGri2
GGCG---------AAA--------GGCA-----------AAGGT---------------------ATCGGT--GCTTTTAGTT-ATTTTT--------TTCGC----A-----------------------------GCTGACG-------------------------GGCAAATTTCCGTTTGCTG------TAGAGCAA-----CAGGTG----------------GGAG----ACAAAATCAATTAACATACAT---AGT--ACACACACA-TTTTGATAAGAGTGG-C----AATCATAATAATTACTCAA----------------------------------TGT-GA-------CAT-TAT---------TT--------GT-----TGTG------TCTTCGTACAG------TGCGTTTGT------GGACGA------GTTGAAGAAGTTGC-------------------------------------------AGCCACCGAAG-GTGC--CASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
.............................................................................................................................................................................................................................................................................................................................................................................................................................ACAG------TGCGTTTGT------GGACGA------G............................................................................2020.50110

Generated: 05/17/2015 at 10:56 PM