ID:

der_797

 Coordinate:

scaffold_4784:12820712-12820862 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-29.6 -29.5 -29.4

Flybase annnotation

exon [dere_GLEANR_15662:1]; CDS [Dere\GG15600-cds]; intron [Dere\GG15600-in]

No Repeatable elements found

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
TGCGGCAGAGAGCAAATTGCAGTCGCCTCAACAACAATTGCGTCAGCCTGGTAAAGATACACATATATTTTTTTTAATCCGGTGCACCGCTTAAAAAACCGTTATATAGTGGGGTGTTCTTACCAAGTGGGTGCAAAACCTTCTAAATGCTTCTACGAGTTTCGGACACTGGGATAGACATCGAAACGATGGCGCAACTGATTGAGACGTCGGCAGATTGTCAAAGAGTTAGTTTTTGCGTTGTTTCTGAG
**************************************************..(((((((......)))))))((((.(((((((..(((......((((((((((.(((.(((.(((.(((((...))))).)))...))).))).))).....))).))))))).))))))).))))(((((...)))))..........************************************************** 		Read size # Mismatch Hit Count Total Norm Total V108
head
 V040
embryo
 M057
embryo
 V107
male body		 GSM1528801
follicle cells		 M055
female body
 V060
head
...................................................................................................................................................................................ATCGAAACGATGGCGCAACT.................................................... 20 0 1 31.00 31 7 5 8 4 0 7 0
.......................................................................................................................................................................................................GATTGAGACGTCGGCAGATTGT.............................. 22 0 1 30.00 30 11 11 1 6 0 1 0
...........................................................................................................................................................................................GATGGCGCAACTGATTGAGACGT......................................... 23 0 1 23.00 23 8 6 2 5 0 2 0
..........................................................................................................................................................................................CGATGGCGCAACTGATTGAGACGT......................................... 24 0 1 18.00 18 2 5 1 0 10 0 0
...................................................................................................................................................................................ATCGAAACGATGGCGCAACTGATTG............................................... 25 0 1 16.00 16 1 0 0 1 13 1 0
...................................................................................................................................................................................ATCGAAACGATGGCGCAACTGATTGAGA............................................ 28 0 1 7.00 7 1 1 1 2 1 1 0
.........................................................................................................................................................................................................TTGAGACGTCGGCAGATTGT.............................. 20 0 1 7.00 7 0 7 0 0 0 0 0
...................................................................................................................................................................................ATCGAAACGATGGCGCAACTGATTGA.............................................. 26 0 1 6.00 6 0 0 1 0 2 3 0
.........................................................................................................................................................................................ACGATGGCGCAACTGATTGAGA............................................ 22 0 1 6.00 6 0 5 0 0 0 1 0
.......................................................................................................................................................................................................GATTGAGACGTCGGCAGATTGTC............................. 23 0 1 5.00 5 0 1 3 1 0 0 0
.....................................................................................................................................................................................CGAAACGATGGCGCAACTGATTGAG............................................. 25 0 1 4.00 4 4 0 0 0 0 0 0
...........................................................................................................................................................................................GATGGCGCAACTGATTGAGACGTC........................................ 24 0 1 4.00 4 2 1 0 1 0 0 0
......................................................................................................................................................................................................TGATTGAGACGTCGGCAGATTGTCA............................ 25 0 1 4.00 4 1 0 0 0 3 0 0
........................................................................................................................................................................................AACGATGGCGCAACTGATTGAGACGT......................................... 26 0 1 4.00 4 1 3 0 0 0 0 0
...................................................................................................................................................................................ATCGAAACGATGGCGCAACTGATTGAG............................................. 27 0 1 4.00 4 1 0 0 2 0 1 0
........................................................................................................................................................................................AACGATGGCGCAACTGATTGAGA............................................ 23 0 1 4.00 4 0 3 1 0 0 0 0
.......................................................................................................................................................................................................GATTGAGACGTCGGCAGATT................................ 20 0 1 4.00 4 2 0 0 2 0 0 0
.................................................................................................................................................................................................GCAACTGATTGAGACGTC........................................ 18 0 1 3.00 3 2 0 1 0 0 0 0
...................................................................................................................................................................................ATCGAAACGATGGCGCAACTGA.................................................. 22 0 1 3.00 3 1 0 0 2 0 0 0
.......................................................................................................................................................................................................GATTGAGACGTCGGCAGATTGTCAAAGA........................ 28 0 1 3.00 3 0 0 0 3 0 0 0
...................................................................................................................................................................................ATCGAAACGATGGCGCACCTGATTG............................................... 25 1 1 3.00 3 0 0 0 0 3 0 0
........................................................................................................................................................................................................................ATTGTCAAAGAGTTAGTTTTT.............. 21 0 1 3.00 3 1 0 1 1 0 0 0
...................................................................................................................................................................................ATAGAAACGATGGCGCAACT.................................................... 20 1 1 3.00 3 0 0 3 0 0 0 0
.....................................................................................................................................................................................................................CAGATTGTCAAAGAGTTAGTTTTT.............. 24 0 1 3.00 3 1 1 0 0 0 1 0
.........................................................................................................................................................................................ACGATGGCGCAACTGATTGAGACGT......................................... 25 0 1 3.00 3 1 1 0 1 0 0 0
.......................................................................................................................................................................................................GATTGAGACGTCGGCAGATTGTCAAAG......................... 27 0 1 3.00 3 0 0 0 2 0 1 0
.......................................................................................................................................................................................................GATTGAGACGTCGGCAGATTGTCAAA.......................... 26 0 1 3.00 3 2 0 0 1 0 0 0
...........................................................................................................................................................................................GATGGCGCAACTGATTGAGA............................................ 20 0 1 3.00 3 0 0 1 0 0 2 0
............................................................................................................................................................................................ATGGCGCAACTGATTGAGACGT......................................... 22 0 1 3.00 3 1 1 1 0 0 0 0
....................................................................................................................................................................................................................GCAGATTGTCAAAGAGTTAGTTTT............... 24 0 1 3.00 3 3 0 0 0 0 0 0
..........................................................................................................................................................................................CGATGGCGCAACTGATTGAGA............................................ 21 0 1 3.00 3 0 2 1 0 0 0 0
............................................................................................................................................................................................ATGGCGCAACTGATTGAGA............................................ 19 0 1 3.00 3 0 1 1 0 0 1 0
..........................................................................................................................................................................................................TGAGACGTCGGCAGATTGTC............................. 20 0 1 2.00 2 0 1 0 0 0 0 1
........................................................................................................................................................................................................ATTGAGACGTCGGCAGATTGT.............................. 21 0 1 2.00 2 1 0 1 0 0 0 0
...............................................................................................................................................................................................................CGTCGGCAGATTGTCAAAGA........................ 20 0 1 2.00 2 0 0 0 1 0 1 0
...............................................................................................................................................................................................GCGCAACTGATTGAGACGTC........................................ 20 0 1 2.00 2 0 2 0 0 0 0 0
...................................................................................................................................................................................ATCGAAACGATGGCGCAAC..................................................... 19 0 1 2.00 2 1 0 1 0 0 0 0
...........................................................................................................................................................................................GATGGCGCAACTGATTGAGACGTCGGC..................................... 27 0 1 2.00 2 0 2 0 0 0 0 0
..........................................................................................................................................................................................CGATGGCGCAACTGATTGAGAC........................................... 22 0 1 2.00 2 0 0 2 0 0 0 0
................................................................................................................................................................................................................GTCGGCAGATTGTCAAAGAGTTAGTTTTT.............. 29 0 1 2.00 2 0 0 2 0 0 0 0
...................................................................................................................................................................................ATCGAAACGATGGCGCAACC.................................................... 20 1 1 2.00 2 0 0 2 0 0 0 0
.................................................................................................................................................................................................................TCGGCAGATTGTCAAAGAGTTAGTTT................ 26 0 1 2.00 2 0 0 0 0 0 2 0
....................................................................................................................................................................................................................GCAGATTGTCAAAGAGTTAGT.................. 21 0 1 2.00 2 0 1 1 0 0 0 0
...............................................................................................................................................................................................................CGTCGGCAGATTGTCAAAG......................... 19 0 1 2.00 2 0 1 0 1 0 0 0
.......................................................................................................................................................................................AAACGATGGCGCAACTGATTGAGA............................................ 24 0 1 2.00 2 1 0 1 0 0 0 0
..........................................................................................................................................................................................................................TGTCAAAGAGTTAGTTTTTGCGTTGTT...... 27 0 1 2.00 2 0 0 0 0 2 0 0
....................................................................................................................................................................................TCGAAACGATGGCGCAAC..................................................... 18 0 1 2.00 2 1 0 1 0 0 0 0
........................................................................................................................................................................................AACGATGGCGCAACTGATTGAG............................................. 22 0 1 2.00 2 1 0 1 0 0 0 0
...........................................................................................................................................................................................GATGGCGCAACTGATTGAGAC........................................... 21 0 1 2.00 2 0 1 1 0 0 0 0
..........................................................................................................................................................................................................................TGTCAAAGAGTTAGTTTTT.............. 19 0 1 2.00 2 0 1 0 1 0 0 0
..........................................................................................................................................................................................................TGAGACGTCGGCAGATTGT.............................. 19 0 1 2.00 2 1 1 0 0 0 0 0
...................................................................................................................................................................................ATCGAAACGATGGCGCCACTGATTG............................................... 25 1 1 2.00 2 0 0 0 0 2 0 0
.....................................................................................................................................................................................CGAAACGATGGCGCAACTGATTGAGA............................................ 26 0 1 1.00 1 0 0 1 0 0 0 0
....................................................................................................................................................................................................................GCAGATTGTCAAAGAGTTAGTTTTTGC............ 27 0 1 1.00 1 1 0 0 0 0 0 0
..............................................................................................................................................................................................GTCGCAACTGATTGAGACGTC........................................ 21 1 1 1.00 1 0 0 1 0 0 0 0
................................................................................................................................................................................................CGCAACTGATTGAGACGTAGGC..................................... 22 1 1 1.00 1 1 0 0 0 0 0 0
........................................................................................................................................................................................AACGATCGCGCAAATGATTGAGAC........................................... 24 2 1 1.00 1 0 1 0 0 0 0 0
........................................................................................................................................................................................AACGATGGCGAAACTGATTGAGACGT......................................... 26 1 1 1.00 1 1 0 0 0 0 0 0
.....................................................................................................................................................................................................................CAGATTGTCAAAGAGTTAGTTTTTGC............ 26 0 1 1.00 1 0 0 0 1 0 0 0
............................................................................................................................................................................................ATGGCGCAACTGATTGAGACT.......................................... 21 1 1 1.00 1 0 0 0 0 0 1 0
..........................................................................................................................................................................................CGATGGCGCAACTGATTGAGACGC......................................... 24 1 1 1.00 1 0 0 1 0 0 0 0
....................AGTCGCCTCAACAACAATTGCGT................................................................................................................................................................................................................ 23 0 1 1.00 1 0 0 0 1 0 0 0
...................................................................................................................................................................................................................GGCAGATTTTCAAAGAGTTAGTTTTT.............. 26 1 1 1.00 1 1 0 0 0 0 0 0
.................................................................................................................................................................................................................................GAGTTAGTTTTTGCGTTGT....... 19 0 1 1.00 1 0 0 0 1 0 0 0
...................................................................................................................................................................................ATCGAAACGATGGGGCAACTGATTG............................................... 25 1 1 1.00 1 0 0 0 0 1 0 0
...................................................................................................................................................................................ATCGAAAGGATGGCGCAACTGATTG............................................... 25 1 1 1.00 1 0 0 0 0 1 0 0
........................................................................................................................................................................................................ATTGAGACGTCGGCAGCTTGT.............................. 21 1 1 1.00 1 0 1 0 0 0 0 0
......................................................................................................................................................................................................................AGATTGTCAAAGAGTTAGTTTTTG............. 24 0 1 1.00 1 1 0 0 0 0 0 0
............................................................................................................................................................................................AGGGCGCAACTGATTGAGAC........................................... 20 1 1 1.00 1 0 1 0 0 0 0 0
...............................................................................................................................................................................................................CGCCGGCAGATTGTCAAAGAGTTAGT.................. 26 1 1 1.00 1 0 0 1 0 0 0 0
....................................................................................................................................................................................TCGAAACGATGGCGCAACTGATTGA.............................................. 25 0 1 1.00 1 0 0 0 0 0 1 0
.......................................................................................................................................................................................................GATTGAGACGTCGGCAGATC................................ 20 1 1 1.00 1 0 0 1 0 0 0 0
...................................................................................................................................................................................ATCGAAACGATGGCGCAA...................................................... 18 0 1 1.00 1 1 0 0 0 0 0 0
............................................................................................................................................................................................ATGGCGCAACTGATTGAGAC........................................... 20 0 1 1.00 1 0 1 0 0 0 0 0
...................................................................................................................................................................................ATCAAAACGATGGCGCAACT.................................................... 20 1 1 1.00 1 1 0 0 0 0 0 0
..................................................................................................................................................................................................................CGGCAGATTGTCAAAGAGTTAGT.................. 23 0 1 1.00 1 1 0 0 0 0 0 0
.....................................................................................................................................................................................................................CAGATTGTCAAAGAGTTAGTTTT............... 23 0 1 1.00 1 1 0 0 0 0 0 0
...................................................................................................................................................................................ATCGAAACGATGCCGCAACT.................................................... 20 1 1 1.00 1 0 0 0 0 0 1 0
.....................................................................................................................................................................................................................CAGATTGTCAAAGAGTTTTTT................. 21 2 1 1.00 1 0 0 0 0 0 1 0
.......................................................................................................................................................................................................GATTAAGACGTCGGCAGATTGT.............................. 22 1 1 1.00 1 0 1 0 0 0 0 0
.................................................................................................................................................................................................................TCGGCAGATTGTCAAAGATTTAGTTTT............... 27 1 1 1.00 1 0 0 0 0 0 1 0
..................................................................................................................................................................................................................CGCCAGATTGTCAAAGAGTTAGT.................. 23 1 1 1.00 1 0 0 1 0 0 0 0
.......................................................................................................................................................................................................GATTGAGACGCCTGCATATTGT.............................. 22 3 1 1.00 1 0 1 0 0 0 0 0
............................................................................................................................................................................................ATGGCGCAACTGATTGAGACGTC........................................ 23 0 1 1.00 1 1 0 0 0 0 0 0
.........................................................................................................................................................................................ACGATGGCGCAACTGATTTATA............................................ 22 2 1 1.00 1 0 1 0 0 0 0 0
...................................................................................................................................................................................................................................GTTAGTTTTTGCGTTGTTTCC... 21 1 1 1.00 1 0 0 1 0 0 0 0
.......................................................................................................................................................................................................................GATTTTCAAAGAGTTAGTTTTTGC............ 24 1 1 1.00 1 1 0 0 0 0 0 0
........................................................................................................................................................................................AACGATGGCGCAACTGATTGAGACG.......................................... 25 0 1 1.00 1 0 0 1 0 0 0 0
......................................................................................................................................................................................................................AGATTGTCAAAGAGTTAGTTTTT.............. 23 0 1 1.00 1 1 0 0 0 0 0 0
...................................................................................................................................................................................ACCGAAACGATGGCGCAACT.................................................... 20 1 1 1.00 1 1 0 0 0 0 0 0
........................................................................................................................................................................................................ATTGAGACGTCGGCAGATTGTC............................. 22 0 1 1.00 1 1 0 0 0 0 0 0
..........................................................................................................................................................................................CGATGGCGCAACTGATTGATACGT......................................... 24 1 1 1.00 1 0 1 0 0 0 0 0
......................................................................................................................................................................................................TGATTGAGACGTCGGCAGATTGTCAA........................... 26 0 1 1.00 1 1 0 0 0 0 0 0
.......................................................................................................................................................................................AAACGATGGCGCAACTGATTGAGACGT......................................... 27 0 1 1.00 1 0 0 0 1 0 0 0
.................................................................................................................................................................................................................TCGGCAGATTGTCAAAGAATTAGTTTT............... 27 1 1 1.00 1 0 0 0 0 0 1 0
.................................................................................................................................................................................................................TCGGCAGATTGTCAAAGAGTTAGTTTT............... 27 0 1 1.00 1 0 0 1 0 0 0 0
.........................................................................................................................................................................................ACGATGGCGCAACTGATTGAG............................................. 21 0 1 1.00 1 1 0 0 0 0 0 0
........................................................................................................................................................................................AACGATGGCGCAACTGATTTAG............................................. 22 1 1 1.00 1 0 1 0 0 0 0 0
....................................................................................................................................................................................................ACTGATTGAGACGTCGGCA.................................... 19 0 1 1.00 1 1 0 0 0 0 0 0
..................................................................................................................................................................................................CGACTGATTGAGACGTCGGCAGAT................................. 24 1 1 1.00 1 0 0 1 0 0 0 0
.......................................................................................................................................................................................................GATTGATACGTCGGCAGATTGTC............................. 23 1 1 1.00 1 0 0 1 0 0 0 0
.....................................................................................................................................................................................CGAAACGATGGCGCAACTGATTGAGAC........................................... 27 0 1 1.00 1 1 0 0 0 0 0 0
.........................................................................................................................................................................................................TTGAGACGTCGGCAGATTGTCAAAG......................... 25 0 1 1.00 1 0 0 0 1 0 0 0
...........................................................................................................................................................................................GATGGCGCAACTGATTGGGACGACG....................................... 25 2 1 1.00 1 1 0 0 0 0 0 0
...........................................................................................................................................................................................................................GTCAAAGAGTTAGTTTTT.............. 18 0 1 1.00 1 1 0 0 0 0 0 0
.....................................................................................................................................................................................................CTGATTGAGACGTTGGCAGAT................................. 21 1 1 1.00 1 1 0 0 0 0 0 0
...............................................................................................................................................................................................GCGCAACTGATTGAGACGT......................................... 19 0 1 1.00 1 0 0 1 0 0 0 0
...................................................................................................................................................................................ATCGAAACGATGGCGAAACTGATTG............................................... 25 1 1 1.00 1 0 0 0 0 1 0 0
.........................................................................................................................................................................................................................TTGTCAAAGAGTTAGTTTTT.............. 20 0 1 1.00 1 1 0 0 0 0 0 0
...........................................................................................................................................................................................GGTGGCGCAACTGATTGAGA............................................ 20 1 1 1.00 1 0 0 0 0 0 1 0
.....................................................................................................................................................................................................................................TAGTTTTTGCGTTGTTTCTCAG 22 1 1 1.00 1 0 1 0 0 0 0 0
...................................................................................................................................................................................ATCGAAACGATGGCGCAACTGATT................................................ 24 0 1 1.00 1 1 0 0 0 0 0 0
.........................................................................................................................................................................................................................TTGTCAAAGAGTTAGTTTT............... 19 0 1 1.00 1 1 0 0 0 0 0 0
.........................................................................................................................................................................................ACGATGGCGCAACTGATTGAGAC........................................... 23 0 1 1.00 1 0 1 0 0 0 0 0
.......................................................................................................................................................................................................................GATTGTCAAAGAGTTAGTTT................ 20 0 1 1.00 1 1 0 0 0 0 0 0
.......................................................................................................................................................................................................GATTGAGACGTCGGCAGATTGTCA............................ 24 0 1 1.00 1 0 0 0 1 0 0 0
..........................................................................................................................................................................................CGATGGCGCAACTGATTTAGA............................................ 21 1 1 1.00 1 0 1 0 0 0 0 0
.....................................................................................................TTATATAGCGGGACGTTCTT.................................................................................................................................. 20 3 1 1.00 1 0 1 0 0 0 0 0
............................................................................................................................................................................................ATGGCGCAACTGCTTGAGATGT......................................... 22 2 1 1.00 1 0 1 0 0 0 0 0
...................................................................................................................................................................................ATCGAAACGATGGCGAACCTGATTG............................................... 25 2 1 1.00 1 0 0 0 0 1 0 0
...............................................................................................................................................................................................................CGTCGGCAGATTGTCAAAGAG....................... 21 0 1 1.00 1 0 0 0 1 0 0 0
.......................................................................................................................................................................................................GATTGAGACTTCGGCAGATTGTC............................. 23 1 1 1.00 1 1 0 0 0 0 0 0
.............................................................................................................................................................................................TGTCGCAACTGATTGAGACGTC........................................ 22 1 1 1.00 1 0 1 0 0 0 0 0
.........................................................................................................................................................................................ACGATGGCGCAACTGATTG............................................... 19 0 1 1.00 1 0 1 0 0 0 0 0
...........................................................................................................................................................................................GATAGCGCAACTGATTGAGACGT......................................... 23 1 1 1.00 1 0 1 0 0 0 0 0
....................................................................................................................................................................................TCGAAACGATGGCGCAACTGATTG............................................... 24 0 1 1.00 1 0 0 0 0 0 1 0
......................................................................................................................................................................................................TGATTGAGACGTCGGCAGATTG............................... 22 0 1 1.00 1 0 1 0 0 0 0 0
....................................................................................................................................................................................................................GCAGATTGTCAAAGAGTTAGTTTTT.............. 25 0 1 1.00 1 1 0 0 0 0 0 0
...................................................................................................................................................................................................................................GGTAGTTTTTGCGTTGTT...... 18 1 1 1.00 1 0 0 1 0 0 0 0
...................................................................................................................................................................................ATAGAAACGATGGCGCAACTG................................................... 21 1 1 1.00 1 0 0 1 0 0 0 0
.................................................................................................................................................................................................................TCGGCAGATTGTCAAAGAGTTAGTT................. 25 0 1 1.00 1 0 0 0 0 0 1 0
..........................................................................................................................................................................................CGATGGCGCAACTCATTGAGACGT......................................... 24 1 1 1.00 1 0 0 0 0 1 0 0
........................................................................................................................................................................................................ATTGAGACGTCGGCAGATTGTCAAAG......................... 26 0 1 1.00 1 0 0 1 0 0 0 0
...............................................................................................................................................................................................................CGTCGGCAGATTGTCAAAGAGTTAGTTC................ 28 1 1 1.00 1 0 0 1 0 0 0 0
.....................................................................................................................................................................................................................................TAGTTTTTGCGTTGTTTCT... 19 0 1 1.00 1 0 0 0 1 0 0 0
.............................................................................................................................................................................................TGGCGCAACTGATTGAGACGTCGGC..................................... 25 0 1 1.00 1 1 0 0 0 0 0 0
..................................................................................................................................................................................................................CGGCAGATTGTCAAAGAGTTAGTT................. 24 0 1 1.00 1 0 0 0 0 0 1 0
...................................................................................................................................................................................ATCGAAACGATGGCGCAACTGATTGAGAC........................................... 29 0 1 1.00 1 0 0 1 0 0 0 0
...................................................................................................................................................................................................AACTGATTGAGACGTCGGCAGATTGTC............................. 27 0 1 1.00 1 0 0 1 0 0 0 0
...............................................................................................................................................................................................................CATCGGCAGATTGTCAAAGA........................ 20 1 1 1.00 1 0 0 1 0 0 0 0
.......................................................................................................................................................................................................GGTTGAGACGTCGGCAGATTGT.............................. 22 1 1 1.00 1 0 0 1 0 0 0 0
..............................................................................................................................................................................................GGCGCAACTGATTGAGACGTC........................................ 21 0 1 1.00 1 1 0 0 0 0 0 0
..............................................................................................................................................................................................GACGCAACTGATTGAGACTTCGGG..................................... 24 3 1 1.00 1 0 1 0 0 0 0 0
..............................................................................................................................................................................................GGCGCAACTGATTGAGACGT......................................... 20 0 1 1.00 1 0 1 0 0 0 0 0
......................................................................................................................................................................................................................AGATTGTCAAAGAGTTAGTTTT............... 22 0 1 1.00 1 0 0 0 1 0 0 0
................................................................................................................................................................................GACATCGAAACGATGGCGC........................................................ 19 0 1 1.00 1 1 0 0 0 0 0 0
..............................................................................................................................................................................................................................AAAGAGTTAGTTTTTGCGTTGTT...... 23 0 1 1.00 1 1 0 0 0 0 0 0
.........................................................................................................................................................................................ACGATGGCGCAACTGATTGAGACGTC........................................ 26 0 1 1.00 1 1 0 0 0 0 0 0
.....................................................................................................................................................................................CGAAACGATGGCGCAACTGATTGA.............................................. 24 0 1 1.00 1 0 0 1 0 0 0 0
........................................................................................................................................................................................AACGATGGCGCAACTGATTGAGAC........................................... 24 0 1 1.00 1 0 0 1 0 0 0 0
......................................................................................................................................................................................................................AGATTGTCAAAGAGTTAGT.................. 19 0 1 1.00 1 0 0 0 1 0 0 0
..................................................................................................................................................................................................................CGGCAGATTGTCAAAGAGTTAGTTTTT.............. 27 0 1 1.00 1 0 0 0 0 0 1 0
...................................................................................................................................................................................AGCGAAACGATGGCGCAACT.................................................... 20 1 1 1.00 1 0 0 1 0 0 0 0
................................................................................................................................................................................................................GTCGGCAGATTGTCAAAG......................... 18 0 1 1.00 1 0 0 0 0 0 1 0
..............................................................................................................................................................................................................................AAAGAGTTAGTTTTTGCGTTGT....... 22 0 1 1.00 1 0 0 1 0 0 0 0
....................................................................................................................................................................................TCGAAACGATGGCGCAACTGATT................................................ 23 0 1 1.00 1 0 0 0 0 0 1 0
.......................................................................................................................................................................................................GATTGAGACGTCGGCAGATTGC.............................. 22 1 1 1.00 1 0 0 1 0 0 0 0
........................................................................................................................................................................................................ATTGAGACGTCGGCAGATTGTT............................. 22 1 1 1.00 1 0 1 0 0 0 0 0
...................................................................................................................................................................................................................................GTTAGTTTTTGCGTTGTTTCTG.. 22 0 1 1.00 1 0 0 0 1 0 0 0
..........................................................................................................................................................................................CGATTGCGCAACTGATTGAGACG.......................................... 23 1 1 1.00 1 1 0 0 0 0 0 0
..........................................................................................................................................................................................CGATGGCGCAACTGATTGCGACGT......................................... 24 1 1 1.00 1 0 0 0 0 1 0 0
................................................................................................................................................................................TTCATCGAAACGATGGCGCAACTGAT................................................. 26 2 1 1.00 1 0 0 1 0 0 0 0
.......................................................................................................................................................................................................GATTGAGACGTCGTCAGATTGT.............................. 22 1 1 1.00 1 0 1 0 0 0 0 0
..........................................................................................................................................................................................................TGAGACGTCGGCAGATTGTCAAAGAGT...................... 27 0 1 1.00 1 0 0 0 0 0 1 0
..........................................................................................................................................................................................CGATGGCGCAACTGATTGAGACGTC........................................ 25 0 1 1.00 1 0 0 1 0 0 0 0
.............................................................................................................................................................................................TTGCGCAACTGATTGAGACGT......................................... 21 1 1 1.00 1 0 0 1 0 0 0 0
.......................................................................................................................................................................................AAACGATGGCGCAACTGATTGAGC............................................ 24 1 1 1.00 1 0 1 0 0 0 0 0
...................................................................................................................................................................................ATCGAAACAATGGCGCAACT.................................................... 20 1 1 1.00 1 0 0 0 0 0 1 0
..................................................................................................................................................................................................................CTGCAGATTGTCAAAGAGTTAGT.................. 23 1 1 1.00 1 0 0 1 0 0 0 0
.....................................................................................................................................................................................................CGGATTGAGACGTCGGCAGATTGTC............................. 25 1 1 1.00 1 0 0 1 0 0 0 0
................................................................................................................................................................................................................................AGAGTTAGTTTTTGCGTTGTTT..... 22 0 1 1.00 1 0 0 0 1 0 0 0
........................................................................................................................................................................................AACGATAGCCCAACTGATTGAGA............................................ 23 2 1 1.00 1 0 1 0 0 0 0 0
...................................................................................................................................................................................................AACTGATTGAGACGTCGGCAGATTGT.............................. 26 0 1 1.00 1 0 0 0 1 0 0 0
............................................................................................................................................................................................ATGGCTCAACTGATTGAGA............................................ 19 1 1 1.00 1 1 0 0 0 0 0 0
..........................................................................................................................................................................................CGATGGCACAACCGATTGAGACGT......................................... 24 2 1 1.00 1 1 0 0 0 0 0 0
..................................................................................................................................................................................................CAACTGATTGAGACGTCGGCAGATTG............................... 26 0 1 1.00 1 0 0 0 0 0 0 1
.........................................................................................................................................................................................................TTGAGACGTCGGTAGATTGT.............................. 20 1 1 1.00 1 0 1 0 0 0 0 0
...................................................................................................................................................................................ATCGAAACGATGGCGCAACTGATTGAGG............................................ 28 1 1 1.00 1 0 0 0 1 0 0 0
............................................................................................................................................................................................AGGGCGCAACTGACTGAGACGT......................................... 22 2 1 1.00 1 0 1 0 0 0 0 0
......................................................................................................................................................................................................TGATTGAGACGCCGGCAGATTGTCA............................ 25 1 1 1.00 1 1 0 0 0 0 0 0
...................................................................................................................................................................................ATCGAAACGATGGCCCAA...................................................... 18 1 2 0.50 1 1 0 0 0 0 0 0
...........................................................................................................................................................................................GGTGGCGCAACTGATTGAG............................................. 19 1 2 0.50 1 0 0 1 0 0 0 0
.................................................................................................................................................................................................GCATCTGATCGAGACGTC........................................ 18 2 3 0.33 1 1 0 0 0 0 0 0
.........................................................................................................................................................................................................................................TTTTGAGTTGTTTCTGAG 18 1 3 0.33 1 1 0 0 0 0 0 0
.................................................................................................................................................................................................GCAATGGATTGAGACGTC........................................ 18 2 5 0.20 1 0 1 0 0 0 0 0
........................................................................................................................................................................................................................ATTGTCGCAGAGTTTGTTTTT.............. 21 3 14 0.07 1 0 0 0 0 0 0 1
...........................................................................................................................................................................................GATGGCGCAACTGGTTGGGG............................................ 20 3 20 0.05 1 0 1 0 0 0 0 0

Anti-sense strand reads

ACGCCGTCTCTCGTTTAACGTCAGCGGAGTTGTTGTTAACGCAGTCGGACCATTTCTATGTGTATATAAAAAAAATTAGGCCACGTGGCGAATTTTTTGGCAATATATCACCCCACAAGAATGGTTCACCCACGTTTTGGAAGATTTACGAAGATGCTCAAAGCCTGTGACCCTATCTGTAGCTTTGCTACCGCGTTGACTAACTCTGCAGCCGTCTAACAGTTTCTCAATCAAAAACGCAACAAAGACTC
**************************************************..(((((((......)))))))((((.(((((((..(((......((((((((((.(((.(((.(((.(((((...))))).)))...))).))).))).....))).))))))).))))))).))))(((((...)))))..........************************************************** 		Read size # Mismatch Hit Count Total Norm Total M055
female body
 V040
embryo
...............................................................................................................................................................................................................GCAGCCGTCTAACAGTTTCTC....................... 21 0 1 1.00 1 1 0
...........................................................................................................................................................................................................................CACTATCTCAATCGAAAACG............ 20 3 6 0.17 1 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droEre2 scaffold_4784:12820662-12820912 + der_797 TGCGGCAGAGAGC---------AAA------------TTGCAGTCGCCTC------AACAACAATTGCGTCAGCCTGGTAAAGAT------------------------------------------ACACATATATTTTTTT-TAA--TCCGGTGCACCGCTTAAAAAACCGTTATATAGTGGGGTG-TTCT-TACCA-AGTGGGT------GCAAAACCTTCT----AAATGCTTCTACGAGTTTCGGACACTGGGATAGACATCGAAACGATGGCGCAACTGATTGAGACGTCGGCA--GATTGTCAA----AGAGTTAGT-TTT--TGCGTTGT------TT-----CTGAG
droYak3 3L:12882710-12882965 + TGCGGCAGAGAGC---------AAA------------TTGCAGTCGCCCC------AACAACAATTGCGTCAGCCTGGTAAAGAT------------------------------------------ACACATATATTTGTTT-TAA--TCCTGTGCACCGCTTAAAAAACCGTTATATAGTCGGGGT-TTTCCCCCCA-AGTGCTT------GCAAAACCTTCT----AAATGCATCTGCGAGTTTCGGACACTGGGCCAAAAACCAAAACGATGGCGCAACTGATTGAGACGTTGGCA--GATTGTCAA----AGAGTTAGT-TTT--TGCGATAATT--GTTT-----CTGAG
droSec2 scaffold_0:4992562-4992838 + TGCGCTAGAGAGC---------AAA------------TTACATTCGCCAC------AACAACAATTGCGTCAGCCTGGTAATGCATACTTGTA-------C------AT----ATATAT--------ATATATATATTTGCTT-TAA--G-CTGTTCATCGTCCAAAAAACCGTTACAAAGTCGGGGG-TTTTGTACCA-AGTGGTACGGATACGAAAACCGTCT----AAATGTTTCTACGAGTTTCGGGCACGGATCCAAAAACCAAAACGATGGCGCAACTGATTGAGACGCCGACA--GATTGTCAA----AGAGTTAGT-TTT--TGCGTTAATT--G-TT-----CTGAG
droSim2 3l:12509728-12510002 + dsi_2474 TGCGCTAGAGAGC---------AAA------------TTACAGTCACCAC------AACAACAATTGCGTCAGCCTGGTAATGCATACTTGTA-------C------AT----ATAT----------ATATATATATTTGCTT-TAA--G-CTGTGCATCGCCCAAAAAACCGTTACAAAGCTGGGGG-TTTTGTACCA-AGTGGTACGGATACAAAAGTCGTCT----AAATGCTTCTACGAGTTTCGGGCACAGATCCATAAACCAAAACGATGGCGCAACTGATTGAGACGCCGACA--GATTGTCAA----AGAGTTAGT-TTT--TGCTTTAATT--G-TT-----CTGAG
dm3 chr3L:12807931-12808193 + TGCGCCAGAGAGC---------AAA------------TTGCAGTCGCCAC------AACAACAATTGCGTCAGCCTGGTAATGCATACTTG--------------T-AT------------------ATATATATATTTGCTT-TAA--G-CTGTGCATCGCCCAAAAAACCGTTACAAACCCAGGGG-TTTTGTACCA-AGTGATA------CGAAAATCGTCT----AAATGCTTCTACGAGTTTTGGGCACAGTACCGAAAACCAAAACGATGGTGCAACTGATTGAGACGCCGACA--GATTGTCAA----AGAGTTAGT-TTT--TGTATTAATT--G-TT-----CTGAG
droEug1 scf7180000409466:4905610-4905884 + TGCGGCAGAGAGC---------AAA------------TTGCAGCCGTCGC------AACAACAATTGCATCAGCCTGGTAAAAAAGC-------TT-TTTC------TTTTA-ATAT---AAATTACA-AATTATATTT--TTTA-AAGTTATTGGCATTAT--TAAAAACCGTTACATATTTGGGGT-TTTT--GGCA-AATATTT------TTGAAATCATCT----AAATGTTTGTACGAGTTTGGGACATTGGGTTGAGAATCAAAGCGATGGCGCAGCTGATTAAGGTGACGGCA--TGTACTGAA----AGAGTTAGT-TTT--TTCGGGGTTT--CTTT-----TCGAG
droBia1 scf7180000302529:812082-812336 - CGCGGCAGAGATG---------AAA------------TTGCAGTCGCAAC------AACAACAATTGCATCAGCCTGGTAAAGAGT-----------TTTCTTTAA------------------------------TTAATTT-TTT--GTCTGTGCATTTAT-GAAAAGCCGTTAGCTGTTCGGGGG-TTTT--GACA-AG-GTTT------CCAAAACCGTCTG---AATTGGTTGGACGAGTTTGGGACACTCGAGTGAAAACCGATGCGATGGCGCAGTTGTTAGAGGCGACGGCAAAGATTGTCGA----AGAGTTATG-ATT--AGCGCTGATT--C-TT-----CCGAG
droTak1 scf7180000415185:16590-16863 - GGCGGCAGAGAGC---------AAA------------TTGCAGCCGCCA---------CAACAATTGCGTCAGCCTGGTAAAAGAAAAAAAAACAT-TTTCTTTAT-------------------------TTTTATGT--TTTG-AATTTCTGTGCATTACACA-AAAACCGTTAGCTAGTCGGGGGATTTT--GCCAAAGTGTTT------CCGAAATCCTCTATGTAATTGGGTGTACGAGTTTGGGACACGTGAGCGAAAACCGAGGCGATGGCGCAGCTGATTGAGGCGACGGCA--AGATG---A----AGAGTTTATAGTG--CGCGTTGATT--T-TTCCTACCCGAG
droEle1 scf7180000491255:1201735-1201993 + TGCAGCAGAGTGC---------AAA------------TTGCATCAGTCAC------AACAACAATTTCGTCAGCCTGGTAATTCAAGT-------AAT-TT----T----------------TTT---TTG--A-T-----TTTG-AATTTCTGTGCTTTACCCA-AAAACCGTTAGCCATTCGGGGGGTTTT--GCTA-GGTATTC------CCAATTTTGTTT----AAATACGTGTACGAGTTTGGGACGTGGGGTTGAAAACTGATGCGATGGCGCAGCTGCTTAAGACGACGACG--GATTGTCGA---AAAAGTTCGT-TCG--GGTC-CGATT--CATC-----CCGAG
droRho1 scf7180000777230:20779-21025 + CACAGCAGAGTGC---------ACA------------TTGCAGCAGCCAC------AACAACAATTTCGTCAGCCTGGTAATTAATC-------TT-------TAT-----------------------------T-----TTTG-AATTTCTGTGCTTTTCTCA-AAAGCCATTA----GCCGGGTG-TTTT--GCCA-GGTATTC------ATAATTTCATCT----AAATGGGTGTACGAGTTTGGGACTAAGTGTTGAAAACCGATGCGGTGGCGCAGCTGCTTGAGGCGACGGCG--GATTGTTTAGAAAAGAGTTC---TTT--CGGGTCGATT--ATTC-----ACGAG
droFic1 scf7180000453839:200963-201228 - CCCAGCAGAGAGG---------AAA------------TTGCAACAGCCAC------AACAACAATTTCGTCAGCCTGGTAATAAAAT-------TGGT-TT------TTGTCATTATTT-----------CGTATT-----TTTG-AATTTTTGTGAATTATCCA--AAACCGTTATTGG-GCGGGGG-TTTT--GCCA-AATGTGG------CTAAAATCATTT----GAATGCGTGTATGAGTTTGAGACGCGATGCTTGGAATTGATACGATGGCGCAGTTGGTAAAGGTGACGACG--AATAGTCAA----AGAGTTGGA-CTTTTTGGCCTGATT--T-TT-----ATGAG
droKik1 scf7180000302272:452882-453156 + GGCGGCAGCGGCGTCGGCAGAGGCAGCATCAACCTCATTGCACTCGCAAC------ATCAACAATTGCATCAGCCTGGTAAAAAATC-------GT-TT------C-TT------------------TTACATATATTTTT-T-TAA--A-C-------CAT--GAGAAACCGTTAGCACGCTTTGGT-CTTT--GACA-AATATTT------CGGAGAAGCCTT----GAATGGTTGTACGAGTTTGGGACATAGGGCAGCGAAATGTCTCGATGGCGCAGCTGCTTGCGGCGGCGTCA--GATAATCAGT--AGCAGCGAGT-TTA----GTTCGATTTTTCTC-----CCGAG
droAna3 scaffold_13337:19781124-19781353 - TGCTGCGC---------------------------------AACA---GA------AGCCACAATTGCGTCAGCCTGGTAAAAAAAACTTA------------TTACAT----TTAAAATTTATT--------ATGTTT---TCG-TAGTTGT--------------ATGGCATTAGGCTTCTAGGAT-TTGT--GGCA-AATGTGT------TTTTAACCATCT----GAGTGTATGTGTGAGTTTGAGAGGCAGGGCGAAAATCATAGGCGGTGGCGCAGCTGTTAAATGCGTCCTCT--TA------A---AAGCGTGC---TTT--TTTG---ACG--G-TT-----CT-AT
droBip1 scf7180000396360:969945-970174 - TGCTGCGC---------------------------------AA---CAGA------AACCACCATTGCGTCAGACTGGTAAAAATAAT-C----AT-------TTATTA----TTATTTTGTGTC-------------------T-A----GTTTTCATAGTTTAA--TGACACTTGGTGTCTAGGAT-TTCT--GCCA-AATGTAG------TTTCTGGCATCC----AAGTGTATGTGTGAGTTTGAGACGCAAGGCGAAAACCATAGGCGGTGGCGCAGCTGTTAAGTGCGTCCTC--------TCGA---AAGCGTGC---TTT--TTTG---ACG--G-TT-----CT-AA
dp5 XR_group6:11660140-11660173 - TGCTGCT-----------------T------------CTGCTGTTGCTGC------AACATCAACTGCG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droPer2 scaffold_20:1584901-1584934 - TGCTGCT-----------------T------------CTGCTGTTGCTGC------AACATCAACTGCG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droVir3 scaffold_13049:22712025-22712078 - AACGCCTGCTATG---------CAT------------TCACAAAAGCAGC------CGCAACGCGAGCATCAGACTGGTAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droGri2 scaffold_15110:20820169-20820225 + TGAGGCGGCATCT---------GCA------------ACACAAACCCAACAACAAAT---GCAGCAACTTCAAACTGGTAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droEre2
TGCGGCAGAGAGC---------AAA------------TTGCAGTCGCCTC------AACAACAATTGCGTCAGCCTGGTAAAGAT------------------------------------------ACACATATATTTTTTT-TAA--TCCGGTGCACCGCTTAAAAAACCGTTATATAGTGGGGTG-TTCT-TACCA-AGTGGGT------GCAAAACCTTCT----AAATGCTTCTACGAGTTTCGGACACTGGGATAGACATCGAAACGATGGCGCAACTGATTGAGACGTCGGCA--GATTGTCAA----AGAGTTAGT-TTT--TGCGTTGT------TT-----CTGAGSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
........................................................................................................................................................................................................................................................................ATCGAAACGATGGCGCAACT........................................................................20131.00317805470
............................................................................................................................................................................................................................................................................................GATTGAGACGTCGGCA--GATTGT................................................22130.0030110116110
................................................................................................................................................................................................................................................................................GATGGCGCAACTGATTGAGACGT.............................................................23123.00232206580
...............................................................................................................................................................................................................................................................................CGATGGCGCAACTGATTGAGACGT.............................................................24118.001801050210
........................................................................................................................................................................................................................................................................ATCGAAACGATGGCGCAACTGATTG...................................................................25116.001610001113
........................................................................................................................................................................................................................................................................ATCGAAACGATGGCGCAACTGATTGAGA................................................................2817.0071101211
..............................................................................................................................................................................................................................................................................................TTGAGACGTCGGCA--GATTGT................................................2017.0070007000
........................................................................................................................................................................................................................................................................ATCGAAACGATGGCGCAACTGATTGA..................................................................2616.0063100002
..............................................................................................................................................................................................................................................................................ACGATGGCGCAACTGATTGAGA................................................................2216.0061005000
............................................................................................................................................................................................................................................................................................GATTGAGACGTCGGCA--GATTGTC...............................................2315.0050301100
..........................................................................................................................................................................................................................................................................CGAAACGATGGCGCAACTGATTGAG.................................................................2514.0040000040
................................................................................................................................................................................................................................................................................GATGGCGCAACTGATTGAGACGTC............................................................2414.0040001120
...........................................................................................................................................................................................................................................................................................TGATTGAGACGTCGGCA--GATTGTCA..............................................2514.0040000013
.............................................................................................................................................................................................................................................................................AACGATGGCGCAACTGATTGAGACGT.............................................................2614.0040003010
........................................................................................................................................................................................................................................................................ATCGAAACGATGGCGCAACTGATTGAG.................................................................2714.0041000210
.............................................................................................................................................................................................................................................................................AACGATGGCGCAACTGATTGAGA................................................................2314.0040103000
............................................................................................................................................................................................................................................................................................GATTGAGACGTCGGCA--GATT..................................................2014.0040000220
......................................................................................................................................................................................................................................................................................GCAACTGATTGAGACGTC............................................................1813.0030100020
........................................................................................................................................................................................................................................................................ATCGAAACGATGGCGCAACTGA......................................................................2213.0030000210
............................................................................................................................................................................................................................................................................................GATTGAGACGTCGGCA--GATTGTCAA----AGA......................................2813.0030000300
...............................................................................................................................................................................................................................................................................................................ATTGTCAA----AGAGTTAGT-TTT--T.........................2113.0030100110
..........................................................................................................................................................................................................................................................................................................CA--GATTGTCAA----AGAGTTAGT-TTT--T.........................2413.0031001010
..............................................................................................................................................................................................................................................................................ACGATGGCGCAACTGATTGAGACGT.............................................................2513.0030001110
............................................................................................................................................................................................................................................................................................GATTGAGACGTCGGCA--GATTGTCAA----AG.......................................2713.0031000200
............................................................................................................................................................................................................................................................................................GATTGAGACGTCGGCA--GATTGTCAA----A........................................2613.0030000120
................................................................................................................................................................................................................................................................................GATGGCGCAACTGATTGAGA................................................................2013.0032100000
.................................................................................................................................................................................................................................................................................ATGGCGCAACTGATTGAGACGT.............................................................2213.0030101010
.........................................................................................................................................................................................................................................................................................................GCA--GATTGTCAA----AGAGTTAGT-TTT--..........................2413.0030000030
...............................................................................................................................................................................................................................................................................CGATGGCGCAACTGATTGAGA................................................................2113.0030102000
.................................................................................................................................................................................................................................................................................ATGGCGCAACTGATTGAGA................................................................1913.0031101000
...............................................................................................................................................................................................................................................................................................TGAGACGTCGGCA--GATTGTC...............................................2012.0020011000
.............................................................................................................................................................................................................................................................................................ATTGAGACGTCGGCA--GATTGT................................................2112.0020100010
....................................................................................................................................................................................................................................................................................................CGTCGGCA--GATTGTCAA----AGA......................................2012.0021000100
....................................................................................................................................................................................................................................................................................GCGCAACTGATTGAGACGTC............................................................2012.0020002000
........................................................................................................................................................................................................................................................................ATCGAAACGATGGCGCAAC.........................................................................1912.0020100010
................................................................................................................................................................................................................................................................................GATGGCGCAACTGATTGAGACGTCGGC.........................................................2712.0020002000
...............................................................................................................................................................................................................................................................................CGATGGCGCAACTGATTGAGAC...............................................................2212.0020200000
.....................................................................................................................................................................................................................................................................................................GTCGGCA--GATTGTCAA----AGAGTTAGT-TTT--T.........................2912.0020200000
........................................................................................................................................................................................................................................................................ATCGAAACGATGGCGCAACC........................................................................2012.0020200000
......................................................................................................................................................................................................................................................................................................TCGGCA--GATTGTCAA----AGAGTTAGT-TT.............................2612.0022000000
.........................................................................................................................................................................................................................................................................................................GCA--GATTGTCAA----AGAGTTAGT-...............................2112.0020101000
....................................................................................................................................................................................................................................................................................................CGTCGGCA--GATTGTCAA----AG.......................................1912.0020001100
............................................................................................................................................................................................................................................................................AAACGATGGCGCAACTGATTGAGA................................................................2412.0020100010
.................................................................................................................................................................................................................................................................................................................TGTCAA----AGAGTTAGT-TTT--TGCGTTGT------T...........2712.0020000002
.........................................................................................................................................................................................................................................................................TCGAAACGATGGCGCAAC.........................................................................1812.0020100010
.............................................................................................................................................................................................................................................................................AACGATGGCGCAACTGATTGAG.................................................................2212.0020100010
................................................................................................................................................................................................................................................................................GATGGCGCAACTGATTGAGAC...............................................................2112.0020101000
.................................................................................................................................................................................................................................................................................................................TGTCAA----AGAGTTAGT-TTT--T.........................1912.0020001100
...............................................................................................................................................................................................................................................................................................TGAGACGTCGGCA--GATTGT................................................1912.0020001010
..........................................................................................................................................................................................................................................................................CGAAACGATGGCGCAACTGATTGAGA................................................................2611.0010100000
.........................................................................................................................................................................................................................................................................................................GCA--GATTGTCAA----AGAGTTAGT-TTT--TGC.......................2711.0010000010
..........................................................................................................................................................................................................................................................................................................CA--GATTGTCAA----AGAGTTAGT-TTT--TGC.......................2611.0010000100
.................................................................................................................................................................................................................................................................................ATGGCGCAACTGATTGAGACT..............................................................2111.0011000000
...............................................................................................................................................................................................................................................................................CGATGGCGCAACTGATTGAGACGC.............................................................2411.0010100000
.........................................AGTCGCCTC------AACAACAATTGCGT..............................................................................................................................................................................................................................................................................................2311.0010000100
............................................................................................................................................................................................................................................................................................................................GAGTTAGT-TTT--TGCGTTGT------............1911.0010000100
...........................................................................................................................................................................................................................................................................................................A--GATTGTCAA----AGAGTTAGT-TTT--TG........................2411.0010000010
.........................................................................................................................................................................................................................................................................TCGAAACGATGGCGCAACTGATTGA..................................................................2511.0011000000
............................................................................................................................................................................................................................................................................................GATTGAGACGTCGGCA--GATC..................................................2011.0010100000
........................................................................................................................................................................................................................................................................ATCGAAACGATGGCGCAA..........................................................................1811.0010000010
.................................................................................................................................................................................................................................................................................ATGGCGCAACTGATTGAGAC...............................................................2011.0010001000
.......................................................................................................................................................................................................................................................................................................CGGCA--GATTGTCAA----AGAGTTAGT-...............................2311.0010000010
..........................................................................................................................................................................................................................................................................................................CA--GATTGTCAA----AGAGTTAGT-TTT--..........................2311.0010000010
.................................................................................................................................................................................................................................................................................ATGGCGCAACTGATTGAGACGTC............................................................2311.0010000010
..............................................................................................................................................................................................................................................................................................................................GTTAGT-TTT--TGCGTTGT------TT-----CC...2111.0010100000
.............................................................................................................................................................................................................................................................................AACGATGGCGCAACTGATTGAGACG..............................................................2511.0010100000
...........................................................................................................................................................................................................................................................................................................A--GATTGTCAA----AGAGTTAGT-TTT--T.........................2311.0010000010
.............................................................................................................................................................................................................................................................................................ATTGAGACGTCGGCA--GATTGTC...............................................2211.0010000010
...........................................................................................................................................................................................................................................................................................TGATTGAGACGTCGGCA--GATTGTCAA----.........................................2611.0010000010
............................................................................................................................................................................................................................................................................AAACGATGGCGCAACTGATTGAGACGT.............................................................2711.0010000100
......................................................................................................................................................................................................................................................................................................TCGGCA--GATTGTCAA----AGAGTTAGT-TTT--..........................2711.0010100000
..............................................................................................................................................................................................................................................................................ACGATGGCGCAACTGATTGAG.................................................................2111.0010000010
.........................................................................................................................................................................................................................................................................................ACTGATTGAGACGTCGGCA--......................................................1911.0010000010
..........................................................................................................................................................................................................................................................................CGAAACGATGGCGCAACTGATTGAGAC...............................................................2711.0010000010
..............................................................................................................................................................................................................................................................................................TTGAGACGTCGGCA--GATTGTCAA----AG.......................................2511.0010000100
..................................................................................................................................................................................................................................................................................................................GTCAA----AGAGTTAGT-TTT--T.........................1811.0010000010
....................................................................................................................................................................................................................................................................................GCGCAACTGATTGAGACGT.............................................................1911.0010100000
................................................................................................................................................................................................................................................................................................................TTGTCAA----AGAGTTAGT-TTT--T.........................2011.0010000010
........................................................................................................................................................................................................................................................................ATCGAAACGATGGCGCAACTGATT....................................................................2411.0010000010
................................................................................................................................................................................................................................................................................................................TTGTCAA----AGAGTTAGT-TTT--..........................1911.0010000010
..............................................................................................................................................................................................................................................................................ACGATGGCGCAACTGATTGAGAC...............................................................2311.0010001000
..............................................................................................................................................................................................................................................................................................................GATTGTCAA----AGAGTTAGT-TT.............................2011.0010000010
............................................................................................................................................................................................................................................................................................GATTGAGACGTCGGCA--GATTGTCA..............................................2411.0010000100
....................................................................................................................................................................................................................................................................................................CGTCGGCA--GATTGTCAA----AGAG.....................................2111.0010000100
..............................................................................................................................................................................................................................................................................ACGATGGCGCAACTGATTG...................................................................1911.0010001000
.........................................................................................................................................................................................................................................................................TCGAAACGATGGCGCAACTGATTG...................................................................2411.0011000000
...........................................................................................................................................................................................................................................................................................TGATTGAGACGTCGGCA--GATTG.................................................2211.0010001000
.........................................................................................................................................................................................................................................................................................................GCA--GATTGTCAA----AGAGTTAGT-TTT--T.........................2511.0010000010
......................................................................................................................................................................................................................................................................................................TCGGCA--GATTGTCAA----AGAGTTAGT-T..............................2511.0011000000
.............................................................................................................................................................................................................................................................................................ATTGAGACGTCGGCA--GATTGTCAA----AG.......................................2611.0010100000
....................................................................................................................................................................................................................................................................................................CGTCGGCA--GATTGTCAA----AGAGTTAGT-TC.............................2811.0010100000
................................................................................................................................................................................................................................................................................................................................TAGT-TTT--TGCGTTGT------TT-----CT...1911.0010000100
..................................................................................................................................................................................................................................................................................TGGCGCAACTGATTGAGACGTCGGC.........................................................2511.0010000010
.......................................................................................................................................................................................................................................................................................................CGGCA--GATTGTCAA----AGAGTTAGT-T..............................2411.0011000000
........................................................................................................................................................................................................................................................................ATCGAAACGATGGCGCAACTGATTGAGAC...............................................................2911.0010100000
........................................................................................................................................................................................................................................................................................AACTGATTGAGACGTCGGCA--GATTGTC...............................................2711.0010100000
...................................................................................................................................................................................................................................................................................GGCGCAACTGATTGAGACGTC............................................................2111.0010000010
...................................................................................................................................................................................................................................................................................GGCGCAACTGATTGAGACGT.............................................................2011.0010001000
...........................................................................................................................................................................................................................................................................................................A--GATTGTCAA----AGAGTTAGT-TTT--..........................2211.0010000100
.....................................................................................................................................................................................................................................................................GACATCGAAACGATGGCGC............................................................................1911.0010000010
.....................................................................................................................................................................................................................................................................................................................AA----AGAGTTAGT-TTT--TGCGTTGT------T...........2311.0010000010
..............................................................................................................................................................................................................................................................................ACGATGGCGCAACTGATTGAGACGTC............................................................2611.0010000010
..........................................................................................................................................................................................................................................................................CGAAACGATGGCGCAACTGATTGA..................................................................2411.0010100000
.............................................................................................................................................................................................................................................................................AACGATGGCGCAACTGATTGAGAC...............................................................2411.0010100000
...........................................................................................................................................................................................................................................................................................................A--GATTGTCAA----AGAGTTAGT-...............................1911.0010000100
.......................................................................................................................................................................................................................................................................................................CGGCA--GATTGTCAA----AGAGTTAGT-TTT--T.........................2711.0011000000
.....................................................................................................................................................................................................................................................................................................GTCGGCA--GATTGTCAA----AG.......................................1811.0011000000
.....................................................................................................................................................................................................................................................................................................................AA----AGAGTTAGT-TTT--TGCGTTGT------............2211.0010100000
.........................................................................................................................................................................................................................................................................TCGAAACGATGGCGCAACTGATT....................................................................2311.0011000000
............................................................................................................................................................................................................................................................................................GATTGAGACGTCGGCA--GATTGC................................................2211.0010100000
.............................................................................................................................................................................................................................................................................................ATTGAGACGTCGGCA--GATTGTT...............................................2211.0010001000
..............................................................................................................................................................................................................................................................................................................................GTTAGT-TTT--TGCGTTGT------TT-----CTG..2211.0010000100
...............................................................................................................................................................................................................................................................................................TGAGACGTCGGCA--GATTGTCAA----AGAGT....................................2711.0011000000
...............................................................................................................................................................................................................................................................................CGATGGCGCAACTGATTGAGACGTC............................................................2511.0010100000
............................................................................................................................................................................................................................................................................AAACGATGGCGCAACTGATTGAGC................................................................2411.0010001000
...........................................................................................................................................................................................................................................................................................................................AGAGTTAGT-TTT--TGCGTTGT------TT-----.....2211.0010000100
........................................................................................................................................................................................................................................................................................AACTGATTGAGACGTCGGCA--GATTGT................................................2611.0010000100
.......................................................................................................................................................................................................................................................................................CAACTGATTGAGACGTCGGCA--GATTG.................................................2611.0010010000
........................................................................................................................................................................................................................................................................ATCGAAACGATGGCGCAACTGATTGAGG................................................................2811.0010000100
droYak3
TGCGGCAGAGAGC---------AAA------------TTGCAGTCGCCCC------AACAACAATTGCGTCAGCCTGGTAAAGAT------------------------------------------ACACATATATTTGTTT-TAA--TCCTGTGCACCGCTTAAAAAACCGTTATATAGTCGGGGT-TTTCCCCCCA-AGTGCTT------GCAAAACCTTCT----AAATGCATCTGCGAGTTTCGGACACTGGGCCAAAAACCAAAACGATGGCGCAACTGATTGAGACGTTGGCA--GATTGTCAA----AGAGTTAGT-TTT--TGCGATAATT--GTTT-----CTGAGSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
...............................................................................................................................................................................................................................................................................................TGAGACGTTGGCA--GATTGTCAA----AGAGT....................................27113.001304310030002
......................................................................................................................................................................................................................................................................................GCAACTGATTGAGAC...............................................................1526.0012000000000012
................................................................................................................................................................................................................................................................................................GAGACGTTGGCA--GATTGTCAA----AGAGT....................................2614.00402110000000
..................................................................................................................................................................................................................................................................................TGGCGCAACTGATTGAGACGTTGGC.........................................................2513.00300000000003
...........................................................................................................................................................................................................................................................................................TGATTGAGACGTTGGCA--G.....................................................1812.00220000000000
..............................................................................................................................................................................................................................................................................................TTGAGACGTTGGCA--GATTGTC...............................................2112.00210100000000
.................................................................................................................................................................................................................................................................................ATGGCGCAACTGATTGAGACGTTG...........................................................2412.00220000000000
............................................................................................................................................................................................................................................................................................GATTGAGACGTTGGCA--GATTGTCAA----A........................................2612.00201000010000
........................................................................................................................................................................................................................................................................ACCAAAACGATGGCGCAACTGATTGA..................................................................2612.00201100000000
..............................................................................................................................................................................................................................................................................................TTGAGACGTTGGCA--GATTGTCAA----.........................................2311.00100000100000
............................................................................................................................................................................................................................................................................AAACGATGGCGCAACTGATTGA..................................................................2211.00100100000000
...........................................................................................................................................................................................................................................................................................TGATTGAGACGTTGGCA--GATTGTCAA----.........................................2611.00100010000000
.....................................................................................................................................................................................................................................................................AAAACCAAAACGATGGCGCAACTGAT.....................................................................2611.00100100000000
................................................................................................................................................................................................................................................................................................GAGACGTTGGCA--GATTGTCAA----AGA......................................2411.00101000000000
............................................................................................................................................................................................................................................................................................GATTGAGACGTTGGCA--GATTGTCAA----AG.......................................2711.00100000010000
.........................................................................................................................................................................................................................................................................................................GCA--GATTGTCAA----AGAGTTAGT-TTT--..........................2411.00100000010000
....................................................................................................................................................................................................................................................................................GCGCAACTGATTGAGACGTTGG..........................................................2211.00100010000000
..............................................................................................................................................................................................................................................................................................................GATTGTCAA----AGAGTTAGT-TTT--T.........................2211.00100100000000
................................................................................................................................................................................................................................................................................GATGGCGCAACTGATTGAGACGTTGGC.........................................................2711.00100100000000
...............................................................................................................................................................................................................................................................................................................ATTGTCAA----AGAGTTAGT-TTT--TG........................2211.00101000000000
...........................................................................................................................................................................................................................................................................................................A--GATTGTCAA----AGAGTTAGT-TTT--T.........................2311.00100100000000
........................................................................................................................................................................................................................................................................................................GGCA--GATTGTCAA----AGAGTTAGT-TTT--..........................2511.00101000000000
...............................................................................................................................................................................................................................................................................................TGAGACGTTGGCA--GATTGTCAA----AGA......................................2511.00101000000000
.........................................................................................................................................................................................................................................................................................ACTGATTGAGACGTTGGCA--GATTGTC...............................................2611.00100100000000
............................................................................................................................................................................................................................................................................................GATTGAGACGTTGGCA--GATTGTC...............................................2311.00110000000000
............................................................................................................................................................................................................................................................................................GATTGAGACGTTGGCA--GATT..................................................2011.00100000010000
........................................................................................................................................................................................................................................................................................................GGCA--GATTGTCAA----AGAGTTAGT-T..............................2311.00101000000000
............................................................................................................................................................................................................................................................................AAACGATGGCGCAACTGATTGAGACG..............................................................2611.00100100000000
......................................................................................................................................................................................................................................................................AAACCAAAACGATGGCGCAACTGAT.....................................................................2511.00100100000000
..........................................................................................................................................................................................................................................................................CAAAACGATGGCGCAACTGATTGA..................................................................2411.00100100000000
........................................................................................................................................................................................................................................................................................AACTGATTGAGACGTTGGC.........................................................1911.00100100000000
...............................................................................................................................................................................................................................................................................................TGAGACGTTGGCA--GATTGTCAA----AGAGC....................................2711.00100100000000
...................................................................................................................................................................................................................................................................................................................TCAA----AGAGTTAGT-TTT--TGCGATAATT--G.............2711.00100100000000
.........................................................................................................................................................................................................................................................................................ACTGATTGAGACGTTGGC.........................................................1811.00100100000000
droSec2
TGCGCTAGAGAGC---------AAA------------TTACATTCGCCAC------AACAACAATTGCGTCAGCCTGGTAATGCATACTTGTA-------C------AT----ATATAT--------ATATATATATTTGCTT-TAA--G-CTGTTCATCGTCCAAAAAACCGTTACAAAGTCGGGGG-TTTTGTACCA-AGTGGTACGGATACGAAAACCGTCT----AAATGTTTCTACGAGTTTCGGGCACGGATCCAAAAACCAAAACGATGGCGCAACTGATTGAGACGCCGACA--GATTGTCAA----AGAGTTAGT-TTT--TGCGTTAATT--G-TT-----CTGAGSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.......................................................................................................................................................................................................................................................................................................CGACA--GATTGTCAA----AGAGTTAGT-TTT--..........................2613.0030030
.......................................................................................................................................................................................................................................................................................................CGACA--GATTGTCAA----AGAGTTAGT-TTT--T.........................2713.0030030
...............................................................................................................................................................................................................................................................................................................ATTGTCAA----AGAGTTAGT-TTT--T.........................2113.0030030
.........................................................................................................................................................................................................................................................................................ACTGATTGAGACGCCGACA--......................................................1912.0020020
................................................................................................................................................................................................................................................................................GATGGCGCAACTGATTGAGACGCC............................................................2412.0020011
.......................................................................................................................................................................................................................................................................AACCAAAACGATGGCGCAACT........................................................................2112.0022000
.............................................................................................................................................................................................................................................................................AACGATGGCGCAACTGATTGAGACGC.............................................................2612.0020020
...............................................................................................................................................................................................................................................................................................TGAGACGCCGACA--GATTGTCAA----AGAGT....................................2712.0020020
..............................................................................................................................................................................................................................................................................................................GATTGTCAA----AGAGTTAGT-TTT--T.........................2212.0020020
................................................................................................................................................................................................................................................................................GATGGCGCAACTGATTGAGACGC.............................................................2312.0020020
.........................................................................................................................................................................................................................................................................................................ACA--GATTGTCAA----AGAGTTAGT-...............................2111.0010010
...............................................CAC------AACAACAATTGCGTCAG...........................................................................................................................................................................................................................................................................................2011.0011000
......................................................................................................................................................................................................................................................................................................CCGACA--GATTGTCAA----AGAGTTAGT-TTT--..........................2711.0010010
.....................................................................................................................................................................................................................................................................................CGCAACTGATTGAGACGC.............................................................1811.0010010
........................................................................................................................................................................................................................................................................................AACTGATTGAGACGCCGACA--GATTGT................................................2611.0010010
.............................................................................................................................................................................................................................................................................AACGATGGCGCAACTGATTGAGA................................................................2311.0010010
..................................................................................................................................................................................................................................................................................TGGCGCAACTGATTGAGACGC.............................................................2111.0010010
.....................................................................................................................................................................................................................................................................AAAACCAAAACGATGGCGCAACTGATT....................................................................2711.0011000
..............................................................................................................................................................................................................................................................................................TTGAGACGCCGACA--GATTGTCAA----AGAG.....................................2711.0010010
.......................................................................................................................................................................................................................................................................................................CGACA--GATTGTCAA----AGAGTT...................................2011.0010010
.................................................................................................................................................................................................................................................................................ATGGCGCAACTGATTGAGACG..............................................................2111.0010001
.......................................................................................................................................................................................................................................................................................................CGACA--GATTGTCAA----AGAGTTAGT-T..............................2411.0010100
........................................................................................................................................................................................................................................................................ACCAAAACGATGGCGCAAC.........................................................................1911.0010010
......................................................................................................................................................................................................................................................................AAACCAAAACGATGGCGCAACTGAT.....................................................................2511.0011000
....................................................................................................................................................................................................................................................................................GCGCAACTGATTGAGACG..............................................................1811.0010001
.................................................................................................................................................................................................................................................................................................................TGTCAA----AGAGTTAGT-TTT--T.........................1911.0010010
.................................................................................................................................................................................................................................................................................................AGACGCCGACA--GATTGTCA..............................................1911.0010010
...............................................................................................................................................................................................................................................................................CGATGGCGCAACTGATTGAGA................................................................2111.0011000
...............................................................................................................................................................................................................................................................................................TGAGACGCCGACA--GATTGTCAA----AG.......................................2411.0010010
......................................................................................................................................................................................................................................................................AAACCAAAACGATGGCGCT...........................................................................1911.0011000
........................................................................................................................................................................................................................................................................ACCAAAACGATGGCGCAACTG.......................................................................2111.0011000
.......................................................................................................................................................................................................................................................................AACCAAAACGATGGCGCAACTG.......................................................................2211.0010001
...........................................................................................................................................................................................................................................................................................................................AGAGTTAGT-TTT--TGCGTT....................1811.0010010
......................................................................................................................................................................................................................................................................................GCAACTGATTGAGACGCCGACA--......................................................2211.0010010
..............................................................................................................................................................................................................................................................................ACGATGGCGCAACTGATTGAGACGC.............................................................2511.0010010
................................................................................................................................................................................................................................................................................................................TTGTCAA----AGAGTTAGT-TTT--..........................1911.0010010
....................................................................................................................................................................................................................................................................AAAAACCAAAACGATGGCGCAA..........................................................................2211.0010010
........................................................................................................................................................................................................................................................................ACCAAAACGATGGCGCAACTGATTGAG.................................................................2711.0010010
.....................................................................................................................................................................................................................................................................................CGCAACTGATTGAGACGCCGACA--......................................................2311.0010010
...................................................................................................................................................................................................................................................................................................................................T-TTT--TGCGTTAATT--G-TT-----CTG..2011.0010010
.........................................................................................................................................................................................................................................................................................................ACA--GATTGTCAA----AGAGTTAGT-TTT--T.........................2511.0010010
........................................................................................................................................................................................................................................................................ACCAAAACGATGGCGCAACT........................................................................2011.0011000
......................................................................................................................................................................................................................................................................................GCAACTGATTGAGACGCC............................................................1811.0010010
droSim2
TGCGCTAGAGAGC---------AAA------------TTACAGTCACCAC------AACAACAATTGCGTCAGCCTGGTAATGCATACTTGTA-------C------AT----ATAT----------ATATATATATTTGCTT-TAA--G-CTGTGCATCGCCCAAAAAACCGTTACAAAGCTGGGGG-TTTTGTACCA-AGTGGTACGGATACAAAAGTCGTCT----AAATGCTTCTACGAGTTTCGGGCACAGATCCATAAACCAAAACGATGGCGCAACTGATTGAGACGCCGACA--GATTGTCAA----AGAGTTAGT-TTT--TGCTTTAATT--G-TT-----CTGAGSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
...............................................................................................................................................................................................................................................................................................TGAGACGCCGACA--GATTGTCAA----AGAGT....................................27115.0015001000000113000000
...........................................................................................................................................................................................................................................................................................TGATTGAGACGCCGACA--GATTGTCA..............................................2517.00710600000000000000
.........................................................................................................................................................................................................................................................................................................ACA--GATTGTCAA----AGAGTTAGT-TTT--T.........................2516.00620300000001000000
...............................................................................................................................................................................................................................................................................................TGAGACGCCGACA--GATTGTCAA----AGAG.....................................2614.00400300000001000000
.........................................................................................................................................................................................................................................................................................................ACA--GATTGTCAA----AGAGTTAGT-TTT--..........................2414.00400400000000000000
...........................................................................................................................................................................................................................................................................................TGATTGAGACGCCGACA--GATTGT................................................2314.00400300000000001000
.........................................................................................................................................................................................................................................................................................ACTGATTGAGACGCCGAC.........................................................1813.00310200000000000000
......................................................................................................................................................................................................................................................................................GCAACTGATTGAGACGCC............................................................1813.00300300000000000000
........................................................................................................................................................................................................................................................................................AACTGATTGAGACGCCGAC.........................................................1913.00300300000000000000
.........................................................................................................................................................................................................................................................................................................ACA--GATTGTCAA----AGAGTTAGT-...............................2113.00300200000000100000
.............................................................................................................................................................................................................................................................................AACGATGGCGCAACTGAT.....................................................................1812.00200200000000000000
...........................................................................................................................................................................................................................................................................AAAACGATGGCGCAAC.........................................................................1612.00200000000002000000
...............................................................................................................................................................................................................................................................................................TGAGACGCCGACA--GATTGTCAA----AG.......................................2412.00200200000000000000
........................................................................................................................................................................................................................................................................ACCAAAACGATGGCGCAAC.........................................................................1912.00200000000001100000
...........................................................................................................................................................................................................................................................................................TGATTGAGACGCCGACA--GATTGTCAA----AGA......................................2912.00200200000000000000
............................................................................................................................................................................................................................................................................................GATTGAGACGCCGACA--GATTG.................................................2112.00200200000000000000
..............................................................................................................................................................................................................................................................................................TTGAGACGCCGACA--GATTGTCAA----AGAG.....................................2712.00200000000002000000
..........................................................................................................................................................................................................................................................................................CTGATTGAGACGCCGACA--GATTGTC...............................................2512.00201000000000100000
..............................................................................................................................................................................................................................................................................................TTGAGACGCCGACA--GATTGTCAA----AGAGT....................................2812.00200000000002000000
...........................................................................................................................................................................................................................................................................................TGATTGAGACGCCGACA--GATT..................................................2112.00200200000000000000
....................................................................................................................................................................................................................................................................................GCGCAACTGATTGAGACG..............................................................1812.00200200000000000000
.......................................................................................................................................................................................................................................................................................................CGACA--GATTGTCAA----AGAGTTAGT-TTT--..........................2612.00200000011000000000
........................................................................................................................................................................................................................................................................................AACTGATTGAGACGCCG...........................................................1712.00200000000002000000
.......................................................................................................................................................................................................................................................................................................CGACA--GATTGTCAA----AGAGTTAGT-TT.............................2512.00200000011000000000
.....................................................................................................................................................................................................................................................................................CGCAACTGATTGAGACGCC............................................................1912.00200200000000000000
..............................................................................................................................................................................................................................................................................................................GATTGTCAA----AGAGTTAGT-TTT--..........................2112.00200200000000000000
.........................................................................................................................................................................................................................................................................................................ACA--GATTGTCAA----AGAGT....................................1711.00100000000001000000
.............................................................................................................................................................................................................................................................................AACGATGGCGCAACTGATTG...................................................................2011.00100100000000000000
.........................................................................................................................................................................................................................................................................................ACTGATTGAGACGCCGA..........................................................1711.00100000010000000000
.....................................................................................................................................................................................................................................................................................................GCCGACA--GATTGTCAA----AG.......................................1811.00100000000001000000
................................................................................................................................................................................................................................................................................................GAGACGCCGACA--GATTGTC...............................................1911.00100000100000000000
...........................................................................................................................................................................................................................................................................................TGATTGAGACGCCGACA--GATTT.................................................2211.00100000000000001000
.......................................................................................................................................................................................................................................................................................................CGACA--GATTGTCAA----AGAGTTAGT-TTT--T.........................2711.00100100000000000000
.......................................................................................................................................................................................................................................................................AACCAAAACGATGGCGCAACTGATTGA..................................................................2711.00100000010000000000
.......................................................................................................................................................................................................................................................................................................CGACA--GATTGTCAA----AGAGTTAGT-T..............................2411.00100000000001000000
..........................................................................................................................................................................................................................................................................................................CA--GATTGTCAA----AGAGTTAGT-TTT--..........................2311.00100000000000100000
........................................................................................................................................................................................................................................................................................AACTGATTGAGACGCCGA..........................................................1811.00100000000001000000
.................................................................................................................................................................................................................................................................................................................TGTCAA----AGAGTTAGT-TTT--TG........................2011.00100100000000000000
...........................................................................................................................................................................................................................................................................................................A--GATTGTCAA----AGAGTTAGT-TTT--T.........................2311.00100000000001000000
.........................................................................................................................................................................................................................................................................................ACTGATTGAGACGCCGACA--G.....................................................2011.00100100000000000000
.................................................................................................................................................................................................................................................................................................AGACGCCGACA--GATTGTCAA----AG.......................................2211.00100100000000000000
........................................................................................................................................................................................................................................................................................................GACA--GATTGTCAA----AGAGTTAGT-TTT--TG........................2711.00100100000000000000
........................................................................................................................................................................................................................................................................................................GACA--GATTGTCAA----AGAGTTAGT-...............................2211.00100000000000100000
.........................................................................................................................................................................................................................................................................................................ACA--GATTGTCAA----AGAGTTAG.................................2011.00100000000000100000
....................................................................................................................................................................................................................................................................................................CGCCGACA--GATTGTCAA----AGAGTTAGT-...............................2611.00100000000001000000
................................................................................................................................................................................................................................................................................................................................TAGT-TTT--TGCTTTAATT--G-TT-----CTGAG2511.00100000000100000000
......................................................................................................................................................................................................................................................................................................CCGACA--GATTGTCAA----AGAGTTAG.................................2311.00100000001000000000
.............................................................................................................................................................................................................................................................................................ATTGAGACGCCGACA--GATTGT................................................2111.00100100000000000000
...........................................................................................................................................................................................................................................................................................TGATTGAGACGCCGACA--GATTGTCAA----.........................................2611.00100000000000010000
........................................................................................................................................................................................................................................................................................................GACA--GATTGTCAA----AGAGTTAGT-TTT--T.........................2611.00100000001000000000
.....................................................................................................................................................................................................................................................................................................GCCGACA--GATTGTCAA----AGAG.....................................2011.00100000000001000000
.........................................................................................................................................................................................GGG-TTTTGTACCA-AGTGGTACGGA.................................................................................................................................................2411.00101000000000000000
..........................................................................................................................................................................................................................................................................................CTGATTGAGACGCCGACA--GATTGTCAA----.........................................2711.00100000000000010000
...............................................................................................................................................................................................................................................................................................TGAGACGCCGACA--GATTGTCAA----AGAGG....................................2711.00100100000000000000
........................................................................................................................................................................................................................................................................................................GACA--GATTGTCAA----AGAGTTAG.................................2111.00100000000001000000
........................................................................................................................................................................................................................................................................ACCAAAACGATGGCGCAACTGATT....................................................................2411.00100000000000010000
..............................................................................................................................................................................................................................................................................................TTGAGACGCCGACA--GATTGTCAA----AGAGTT...................................2911.00100000010000000000
..................................................................................................................................................................................................................................................................................................................GTCAA----AGAGTTAGT-TTT--TGCTTTAAT.................2611.00100000000001000000
......................................................................................................................................................................................................................................................................................................CCGACA--GATTGTCAA----AGAGTTAGT-T..............................2511.00100000010000000000
...............................................................................................................................................................................................................................................................................................TGAGACGCCGACA--GATT..................................................1711.00100000000001000000
..............................................................................................................................................................................................................................................................................................TTGAGACGCCGACA--GATTGT................................................2011.00101000000000000000
.....................................................................................................................................................................................................................................................................................................GCCGACA--GATTGTCAA----.........................................1611.00100000000001000000
......................................................................................................................................................................................................................................................................................GCAACTGATTGAGACGCCGACA--GATTG.................................................2711.00100100000000000000
......................................................................................................................................................................................................................................................................................GCAACTGATTGAGACGCCGACA--......................................................2211.00100000000000001000
.........................................................................................................................................................................................................................................................................................ACTGATTGAGACGCCG...........................................................1611.00100000000001000000
...........................................................................................................................................................................................................................................................................................TGATTGAGACGCCGACA--GATTGG................................................2311.00110000000000000000
.....................................................................................................................................................................................................................................................................................CGCAACTGATTGAGA................................................................1511.00100000001000000000
...........................................................................................................................................................................................................................................................................AAAACGATGGCGCAACTGATTG...................................................................2211.00100100000000000000
....................................................................................................................................................................................................................................................................................................CGCCGACA--GATTGTCAA----AGAA.....................................2111.00100010000000000000
................................................................................................................................................................................................................................................................................GATGGCGCAACTGATTGAG.................................................................1911.00100000000000100000
.........................................................................................................................................................................................................................................................................................................ACA--GATTGTCAA----AGAGTTAGT-T..............................2211.00100000000000100000
................................................................................................................................................................................................................................T----AAATGCTTCTACGAGTTTCGGGCACAGA...................................................................................................2911.00100000010000000000
.......................................................................................................................................................................................................................................................................................CAACTGATTGAGACGCCG...........................................................1811.00100100000000000000
................................................................................................................................................................................................................................................................................................GAGACGCCGACA--GATTGTCAA----.........................................2111.00100000000001000000
.........................................................................................................................................................................................................................................................................................ACTGATTGAGACGCCGACA--GATTGTCAA----.........................................2811.00100000000000010000
...............................................................................................................................................................................................................................................................................................TGAGACGCCGACA--GATTG.................................................1811.00100100000000000000
............................................................................................................................................................................................................................................................................................GATTGAGACGCCGACA--GATTGG................................................2211.00100100000000000000
................................................................................................................................................................................................................................................................................................................TTGTCAA----AGAGTTAGT-TTT--TAAA......................2340.25100000000100000000
dm3
TGCGCCAGAGAGC---------AAA------------TTGCAGTCGCCAC------AACAACAATTGCGTCAGCCTGGTAATGCATACTTG--------------T-AT------------------ATATATATATTTGCTT-TAA--G-CTGTGCATCGCCCAAAAAACCGTTACAAACCCAGGGG-TTTTGTACCA-AGTGATA------CGAAAATCGTCT----AAATGCTTCTACGAGTTTTGGGCACAGTACCGAAAACCAAAACGATGGTGCAACTGATTGAGACGCCGACA--GATTGTCAA----AGAGTTAGT-TTT--TGTATTAATT--G-TT-----CTGAGSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
...............................................................................................................................................................................................................................................................................................TGAGACGCCGACA--GATTGTCAA----AGAGT....................................271355.003550000000000000000000001210000000000003001522310313200200000000000000000000000041324004000000000000000000000000000000000000000000000000000000013321142513306332000000000000000000000000000000000005023000310000031928432400046031501074112000000000010000000000000002000000000000000000000000000000030000013250200008001000000000000029641802000
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..................................................................................................................................................................................................................................................................................................................GTCAA----AGAGTTAGT-TTT--TGTATTAATT--G-............2812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000
.....................................................................................................................................................................................................................................................................................................GCCGACA--GATTGTCAA----AGA......................................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000101000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................ATTGTCAA----AGAGTTAGT-TT.............................1912.0020000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000
........................................................................................................................................................................................................................................................................................AACTGATTGAGACGCCGACA--GA....................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................CAACTGATTGAGACGCCG...........................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000001000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................ATTGTCAA----AGAGTTAGT-TTT--TT........................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000001000000000000000000000000
..........................................................................................................................................................................................................................................................................................................CA--GATTGTCAA----AGAGTTAGT-TTT--AA........................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................TGAGACGCCGACA--GATTGTCAA----AGAGA....................................2712.0020000000000000000000000000000000000000000100000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................AACTGATTGAGACGCCGA..........................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000100000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................TGATTGAGACGCCGACA--GAT...................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................A--GATTGTCAA----AGAGTTAGT-TT.............................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
........................................................................................................................................................................................................................................................................................................GACA--GATTGTCAA----AGAGTTAG.................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000010000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................TTGAGACGCCGACA--GATTGTCAA----AGAA.....................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................AACTGATTGAGACGCCGACA--......................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................TGTCAA----AGAGTTAGT-TTT--TT........................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000
..............................................................................................................................................................................................................................................................................................................GATTGTCAA----AGAGTTAGT-TTT--TGTA......................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000100000000000000000
...............................................................................................................................................................................................................................................................................................TGAGACGCCGACA--GATTGT................................................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000
..................................................................................................................................................................................................................................................................................................GACGCCGACA--GATTGTCAA----AGAG.....................................2312.0020000000000000000000000000000000000001000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................GACGCCGACA--GATTGTCAA----AGAGT....................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................A--GATTGTCAA----AGAGTTAGT-TTT--TT........................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000
........................................................................................................................................................................................................................................................................................................GACA--GATTGTCAA----AGAGTTAGT-T..............................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
....................................................................................................................................................................................................................................................................................................CGCCGACA--GATTGTCAA----AGAGTTAGT-TTT--..........................2912.0020000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000
......................................................................................................................................................................................................................................................................................................CCGACA--GATTGTCAA----AGAGTTAGT-TTT--TG........................2912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................TTGAGACGCCGACA--GATTGTCAA----A........................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................CTGATTGAGACGCCGACA--GATTGTCA..............................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000
......................................................................................................................................................................................................................................................................................................CCGACA--GATTGTCAA----AGAGTTAG.................................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................CCGACA--GATTGTCAA----AGAGTTAGT-T..............................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................ACTGATTGAGACGCCGACA--GATTGTC...............................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................GACGCCGACA--GATTGTCAA----AGAGTT...................................2512.0020000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................GATTGAGACGCCGACA--GATTGT................................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................ATTGAGACGCCGACA--GATTGTC...............................................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000100000
.........................................................................................................................................................................................................................................................................................ACTGATTGAGACGCCGACA--GATTGT................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................TGCAACTGATTGAGACGCC............................................................1912.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000001000000000000000000000000
...................................................................................................................................................................................................................................................................................................ACGCCGACA--GATTGTCAA----AGAGTT...................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000010
.............................................................................................................................................................................................................................................................................................................................AGTTAGT-TTT--TGTATTAA..................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
......................................................................................................................................................................................................................................................................AAACCAAAACGATGGTGCAACTGA......................................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000101000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................TTGTCAA----AGAGTTAGT-TTT--TG........................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000010000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................A----AGAGTTAGT-TTT--TGTATTAA..................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000001000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................AA----AGAGTTAGT-TTT--TGTATTAA..................2212.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000100000000000
.......................................................................................................................................................................................................................................................................................................CGACA--GATTGTCAA----AGAGTTAGT-TTT--TT........................2812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000
...........................................................AACAATTGCGTCAGCCTGGT.....................................................................................................................................................................................................................................................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................CTGATTGAGACGCCGACA--GATTG.................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000
............................................................................................................................................................................................................................................................................................GATTGAGACGCCGACA--GATTGTCAA----.........................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................TGGTGCAACTGATTGAGACGC.............................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................GATTGAGACGCCGACA--GATTGTCAA----A........................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................AACCAAAACGATGGTGCAACTGAT.....................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................GTGCAACTGATTGAGACGC.............................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................ACA--GATTGTCAA----AGAGTTAGT-TTT--A.........................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................ACGCCGACA--GATTGTCAA----AGAGTTAGT-T..............................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
..............................................................................................................................................................................................................................................................................................................GATTGTCAA----AGAGTTAGT-TT.............................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................TCAA----AGAGTTAGT-TTT--TG........................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................ATTGTCAA----AGAGTTAGT-TTT--TGTATT....................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................TTAGT-TTT--TGTATTAATT--G-TT-----.....2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................CTACGAGTTTTGGGCACA.....................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEug1
TGCGGCAGAGAGC---------AAA------------TTGCAGCCGTCGC------AACAACAATTGCATCAGCCTGGTAAAAAAGC-------TT-TTTC------TTTTA-ATAT---AAATTACA-AATTATATTT--TTTA-AAGTTATTGGCATTAT--TAAAAACCGTTACATATTTGGGGT-TTTT--GGCA-AATATTT------TTGAAATCATCT----AAATGTTTGTACGAGTTTGGGACATTGGGTTGAGAATCAAAGCGATGGCGCAGCTGATTAAGGTGACGGCA--TGTACTGAA----AGAGTTAGT-TTT--TTCGGGGTTT--CTTT-----TCGAGSizeHit CountTotal NormTotal
No Reads
droBia1
CGCGGCAGAGATG---------AAA------------TTGCAGTCGCAAC------AACAACAATTGCATCAGCCTGGTAAAGAGT-----------TTTCTTTAA------------------------------TTAATTT-TTT--GTCTGTGCATTTAT-GAAAAGCCGTTAGCTGTTCGGGGG-TTTT--GACA-AG-GTTT------CCAAAACCGTCTG---AATTGGTTGGACGAGTTTGGGACACTCGAGTGAAAACCGATGCGATGGCGCAGTTGTTAGAGGCGACGGCAAAGATTGTCGA----AGAGTTATG-ATT--AGCGCTGATT--C-TT-----CCGAGSizeHit CountTotal NormTotal
No Reads
droTak1
GGCGGCAGAGAGC---------AAA------------TTGCAGCCGCCA---------CAACAATTGCGTCAGCCTGGTAAAAGAAAAAAAAACAT-TTTCTTTAT-------------------------TTTTATGT--TTTG-AATTTCTGTGCATTACACA-AAAACCGTTAGCTAGTCGGGGGATTTT--GCCAAAGTGTTT------CCGAAATCCTCTATGTAATTGGGTGTACGAGTTTGGGACACGTGAGCGAAAACCGAGGCGATGGCGCAGCTGATTGAGGCGACGGCA--AGATG---A----AGAGTTTATAGTG--CGCGTTGATT--T-TTCCTACCCGAGSizeHit CountTotal NormTotal
No Reads
droEle1
TGCAGCAGAGTGC---------AAA------------TTGCATCAGTCAC------AACAACAATTTCGTCAGCCTGGTAATTCAAGT-------AAT-TT----T----------------TTT---TTG--A-T-----TTTG-AATTTCTGTGCTTTACCCA-AAAACCGTTAGCCATTCGGGGGGTTTT--GCTA-GGTATTC------CCAATTTTGTTT----AAATACGTGTACGAGTTTGGGACGTGGGGTTGAAAACTGATGCGATGGCGCAGCTGCTTAAGACGACGACG--GATTGTCGA---AAAAGTTCGT-TCG--GGTC-CGATT--CATC-----CCGAGSizeHit CountTotal NormTotal
No Reads
droRho1
CACAGCAGAGTGC---------ACA------------TTGCAGCAGCCAC------AACAACAATTTCGTCAGCCTGGTAATTAATC-------TT-------TAT-----------------------------T-----TTTG-AATTTCTGTGCTTTTCTCA-AAAGCCATTA----GCCGGGTG-TTTT--GCCA-GGTATTC------ATAATTTCATCT----AAATGGGTGTACGAGTTTGGGACTAAGTGTTGAAAACCGATGCGGTGGCGCAGCTGCTTGAGGCGACGGCG--GATTGTTTAGAAAAGAGTTC---TTT--CGGGTCGATT--ATTC-----ACGAGSizeHit CountTotal NormTotal
No Reads
droFic1
CCCAGCAGAGAGG---------AAA------------TTGCAACAGCCAC------AACAACAATTTCGTCAGCCTGGTAATAAAAT-------TGGT-TT------TTGTCATTATTT-----------CGTATT-----TTTG-AATTTTTGTGAATTATCCA--AAACCGTTATTGG-GCGGGGG-TTTT--GCCA-AATGTGG------CTAAAATCATTT----GAATGCGTGTATGAGTTTGAGACGCGATGCTTGGAATTGATACGATGGCGCAGTTGGTAAAGGTGACGACG--AATAGTCAA----AGAGTTGGA-CTTTTTGGCCTGATT--T-TT-----ATGAGSizeHit CountTotal NormTotal
No Reads
droKik1
GGCGGCAGCGGCGTCGGCAGAGGCAGCATCAACCTCATTGCACTCGCAAC------ATCAACAATTGCATCAGCCTGGTAAAAAATC-------GT-TT------C-TT------------------TTACATATATTTTT-T-TAA--A-C-------CAT--GAGAAACCGTTAGCACGCTTTGGT-CTTT--GACA-AATATTT------CGGAGAAGCCTT----GAATGGTTGTACGAGTTTGGGACATAGGGCAGCGAAATGTCTCGATGGCGCAGCTGCTTGCGGCGGCGTCA--GATAATCAGT--AGCAGCGAGT-TTA----GTTCGATTTTTCTC-----CCGAGSizeHit CountTotal NormTotal
No Reads
droAna3
TGCTGCGC---------------------------------AACA---GA------AGCCACAATTGCGTCAGCCTGGTAAAAAAAACTTA------------TTACAT----TTAAAATTTATT--------ATGTTT---TCG-TAGTTGT--------------ATGGCATTAGGCTTCTAGGAT-TTGT--GGCA-AATGTGT------TTTTAACCATCT----GAGTGTATGTGTGAGTTTGAGAGGCAGGGCGAAAATCATAGGCGGTGGCGCAGCTGTTAAATGCGTCCTCT--TA------A---AAGCGTGC---TTT--TTTG---ACG--G-TT-----CT-ATSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
............................................................................................................................................................................................................................................................................................GTTAAATGCGTCCTCT--TA------A---AAGCG.....................................2412.002000002
.....................................................................................................................................................................................................................................................................AAATCATAGGCGGTGGCGCAGC.........................................................................2211.001000001
...........................................................................................................................................................................................................................................................................TAGGCGGTGGCGCAGCTGTTAAATGC...............................................................2611.001010000
.....................................................................................................................................................................................................................................................................................................GTCCTCT--TA------A---AAGCGTGC---TTT--TTT.......................2411.001000001
....................................................................................................................................................................................................................................................................................................CGTCCTCT--TA------A---AAGCGTGC---TTT--T.........................2311.001000001
..........................................................................................................................................................................................................................................................................ATAGGCGGTGGCGCAGCTGTTAAATGC...............................................................2711.001010000
.........................................AACA---GA------AGCCACAATTGCGTCAGCC.........................................................................................................................................................................................................................................................................................2511.001000001
droBip1
TGCTGCGC---------------------------------AA---CAGA------AACCACCATTGCGTCAGACTGGTAAAAATAAT-C----AT-------TTATTA----TTATTTTGTGTC-------------------T-A----GTTTTCATAGTTTAA--TGACACTTGGTGTCTAGGAT-TTCT--GCCA-AATGTAG------TTTCTGGCATCC----AAGTGTATGTGTGAGTTTGAGACGCAAGGCGAAAACCATAGGCGGTGGCGCAGCTGTTAAGTGCGTCCTC--------TCGA---AAGCGTGC---TTT--TTTG---ACG--G-TT-----CT-AASizeHit CountTotal NormTotal
No Reads
dp5
TGCTGCT-----------------T------------CTGCTGTTGCTGC------AACATCAACTGCG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
No Reads
droPer2
TGCTGCT-----------------T------------CTGCTGTTGCTGC------AACATCAACTGCG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
TGCTGCT-----------------T------------CTGCTGTTGCTG...................................................................................................................................................................................................................................................................................................................20200.153120000
droVir3
AACGCCTGCTATG---------CAT------------TCACAAAAGCAGC------CGCAACGCGAGCATCAGACTGGTAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
......................................CACAAAAGCAGC------CGCAACGCGAGC................................................................................................................................................................................................................................................................................................2411.001000100000000000000000000000000000000000000000000000000000000000
droGri2
TGAGGCGGCATCT---------GCA------------ACACAAACCCAACAACAAAT---GCAGCAACTTCAAACTGGTAA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/17/2015 at 10:54 PM