ID:

der_699

 Coordinate:

scaffold_4784:2458254-2458404 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-5.1 -5.0 -4.8 -4.7

Flybase annnotation

exon [dere_GLEANR_14993:4]; CDS [Dere\GG14864-cds]; intron [Dere\GG14864-in]

Repeatable elements

NameClassFamilyStrand
(CAA)nSimple_repeatSimple_repeat+
Gypsy8-I_Dpse-intLTRGypsy+
mature
  1. scaffold_4690:18232745-18232763 -
  2. der_699  scaffold_4784:2458284-2458302 +
  3. scaffold_4820:535750-535768 -
  4. scaffold_4820:536283-536301 -
  5. scaffold_4845:14195249-14195267 +
star

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
TAGATTGGAGCTGAGTTTTTCCCCCAGACACCCATATTTGCATTATGCAATCCAAAACCAAAACCAAAACAACAGCAACAACAGCAACAGCAGCAACCACAACAAGCAGCAATCATAAGCTTTAATGTCTCACTAAAACAACAAACTCCACGCATTTTACCCTCCTAAAAAAATACAAAAATACATCAAAATGCTCAGCAGCCAGCCAAAGTCGAGGAAAAGCTGGCAAATGCAGTATTAATTGCACCTAC
**************************************************..................................................................................((.................(((((((.............................))))))).....))************************************************** 		Read size # Mismatch Hit Count Total Norm Total V108
head
 M055
female body
 M057
embryo
................................................................................ACAGCAACAGCAGCAACCA........................................................................................................................................................ 19 0 5 0.20 1 0 1 0
.....................................................................................AACAGCAGCAACCACAAC.................................................................................................................................................... 18 0 5 0.20 1 1 0 0
................................................................................................................................CACACCAAAATAACAAACTCC...................................................................................................... 21 3 11 0.09 1 0 0 1
.........................................................................AGCAACAACAGCAACAGCAGCA............................................................................................................................................................ 22 0 16 0.06 1 1 0 0
...........................................................................CAACAACAGCAACAGCAGC............................................................................................................................................................. 19 0 20 0.05 1 0 1 0
...........................................................................CAACAACAGCAACAGCAGCA............................................................................................................................................................ 20 0 20 0.05 1 0 0 1
..........................................................................GCAACAACAGCAACAGCAGC............................................................................................................................................................. 20 0 20 0.05 1 0 0 1

Anti-sense strand reads

ATCTAACCTCGACTCAAAAAGGGGGTCTGTGGGTATAAACGTAATACGTTAGGTTTTGGTTTTGGTTTTGTTGTCGTTGTTGTCGTTGTCGTCGTTGGTGTTGTTCGTCGTTAGTATTCGAAATTACAGAGTGATTTTGTTGTTTGAGGTGCGTAAAATGGGAGGATTTTTTTATGTTTTTATGTAGTTTTACGAGTCGTCGGTCGGTTTCAGCTCCTTTTCGACCGTTTACGTCATAATTAACGTGGATG
**************************************************..................................................................................((.................(((((((.............................))))))).....))************************************************** 		Read size # Mismatch Hit Count Total Norm Total V107
male body		 V040
embryo
.................................................................................................................................................................................TTTGGTGTAGTTTTGCGAGTCG.................................................... 22 3 1 1.00 1 1 0
..................................................................................................................................................AGATGCGTAAAGTGGGAGG...................................................................................... 19 2 4 0.25 1 1 0
..............................................................................................................................................GTTGTGGTGCGCAAAATGGG......................................................................................... 20 3 7 0.14 1 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droEre2 scaffold_4784:2458204-2458454 + der_699 T-AGATTGGAG-----------------------CTGAG---T--T---TTT---CCC-----CCA--G----------------ACACCC--------ATATTTGCATTATGCAATCCAAA-ACC--------A---A-------AACCAAAACA--------------------------------------------AC-------------AGCAA---CAACAGC------A---A------CAGCAG-CAACCA---------------------------------------------------CA-------ACAAGCAGCAAT--CATAAGCTTTAATGTCT-CACTAAAACAA------------------CAAACTCCACGCATTTTACCCTCCTAAAA-AAAT---------------------ACAAA----------A-----AT-----ACATCAAAATGCT---------------------------------------------CA------------------GCAGC---------------CAGCCAAAGT---CGAGGAAAAGCTG--------------------GCAAATGCA----GTA-----TTAATTGC--------------------------ACCTAC
droYak3 3L:9492161-9492422 - dya_752 T-AGATTGGAG-----------------------CTGCT---T--T---TTT---TCCCCC--CCAAAG----------------ACACCC--------ATATTTGCATTATGCAATCCAAA-ACC--------A---A--AACAAAACCAAAA-----------------------------------CA---------GC-------------ACCAA---CAACAGC------A---A------CAGCAG-CAACCA---------------------------------------------------CA-------ACAAGCAGCAAT--CATAAGCTTTAATGTCT-CACTAAAACAAC---------------AACAAACTCCACGCATTTTACCCTCCTAAAA--AAT---------------------ACAAA----------A-----AT-----ACATCGAAATGCAA--------------------------------------------CA------------------GCAGC---------------CAGCCAAAGT---CGAGGAAAAGCTG--------------------GCAAATGCA----GTA-----TTAATTGC--------------------------ACCT--
droSec2 scaffold_2:2473191-2473425 + T-AGATTGGAG-----------------------CCGAG---T--T---TTT---CCC-----CCA--G----------------ACACCC--------ATATTTGCATTATGCAATCCAAA-ACC--------A---A-------------------------------------------------------------------------------AA---CAACAGC------A---A------CAGCAG-CAACCA---------------------------------------------------CA-------ACAAGCAGCAAT--CATAAGCTTTAATGTCT-CACTAAAAC-------------------------TCCACGCATTTTACCCTCCTAAAA--AAT---------------------A----ACAACAAAAAA-----AC-----ACATCAAAATGCTA--------------------------------------------CA------------------GCAGA---------------CAGCCAAAGT---CGAGGAAAAGCTG--------------------GCAAATGCA----GTA-----TTAATTGC--------------------------ACCTAC
droSim2 3l:2339005-2339242 + T-AGATTGGAG-----------------------CCGAG---T--T---TTT---CCC-----CCA--G----------------ACACCC--------ATATTTGCATTATGCAATCCAAA-ACC--------A---A-------------------------------------------------------------------------------AA---CAACAGC------A---A------CAGCAG-CAACCA---------------------------------------------------CA-------ACAAGCAGCAAT--CATAAGCTTTAATGTCT-CACTAAAAC-------------------------TCCACGCATTTTACCCTCCTAAAA--AAT------------------G--ACA--ACAACAAAAAA-----AC-----ACATCAAAATGCTA--------------------------------------------CA------------------GCAGA---------------CAGCCAAAGT---CGAGGAAAAGCTG--------------------GCAAATGCA----GTA-----TTAATTGC--------------------------ACCTAC
dm3 chr3L:2442240-2442488 + T-AGATTGGAG-----------------------CCGAG---T--TTTTTTT---CCC-----CCA--G----------------ACACCC--------ATATTTGCATTATGCAATCCAAA-ACC--------A---A----------------------------------------------------------------------------AACAA---CAACAGC------A---A------CAGCAG-CAACCA---------------------------------------------------CA-------ACAAGCAGCAAT--CATAAGCTTTAATGTCT-CACTAAAAC-------------------------TCCACGCATTTTACCCTCCTAAAA--AAT------AAT---------A--ACA--ACAACAAAA---AAAAAC-----ACATCAAAATGCTA--------------------------------------------CA------------------GCAGA---------------GAGCCAAAGT---CGAGGAAAAGCTG--------------------GCAAATGCA----GTA-----TTAATTGC--------------------------ACCTAC
droEug1 scf7180000409466:172251-172537 + T-AGATTGGAG-----------------------CTGAC---T--T---TTCC--TTC-----CCA--G----------------ACCCCC--------ATATTTGCATTATGCAATCCCAAACCCATTCACGCACAC-AC--CAAAACCAACA-----------------------------------CAGCACTAACAGC-------------AGCAG---CAACAGC------A---A------CAGCAG-CGACCA---------------------------------------------------CA-------ACAAGCAGCAAT--CATAAGCTTTAATGTCT-TACTAAAACAA------------------CAAACTCCACGCATTTTACCCTCTTAAAA--AAC---------------------C-A--ACAACACAA------AA-CCAAAACATCAAAATGCAA--------------------------------------------CA------------------GCAGC---------------CAGCCAAAGT---CGTGGAAAAGCTG--------------------GCAAATGCA----GTA-----TTAATTGC--------------------------ACCTAC
droBia1 scf7180000302428:9207465-9207727 + T-AGATTGGAG-----------------------CAGAG---T--T---TTT---CTC-----CCATAG----------------ACCCCC--------ATATTTGCATTATGCAATCCAAAAACCATTCACGCACAC-AC--CAAA-----AACAA--------------------------------CA---------GC-------------AACAG---CAACATC------A---A------CAGCAG-CAACCA---------------------------------------------------CAA------ACAAGCAGCAAT--CATAAGCTTTAATGTCT-TACTAAAACAA------------------CAAACTCCACGCACTTTACCCTCTTAAAA--AAT---------------------AC----------------------------AACAAAATACGAA------AA-----------------------------------CA------------------ACAGC---------------CAGCCAAAGT---CGAGGAAAAGCTG--------------------GCAAATGCA----GTA-----TTAATTGC--------------------------ACCTAC
droTak1 scf7180000415857:189750-190016 + TTAGATTGGAG-----------------------CTGCG---T--T---TTT---CTC-----CCA--G----------------GCCCCCCCCCTCCTATATTTGCATTATGCAATCCCAA-ACCATTCACGCACAC-AC--CAAA-----AACA--------------------------------------------AC-------------AACAG---CCACAGC------A---G------CAGCAG-CAACCA---------------------------------------------------CA-------ACAAGCAGCAAT--CATAAGCTTTAATGTCT-TACTAAAACAA------------------CAAAATCCACGCATTTTACCCTCTTAAAA--AAT---------------------ACAAA-----A--------------------ACAAAATACAA-------AA-----------------------------------CA------------------ACAGC---------------CAGCCAAAGT---CGAGGAAAAGCTG--------------------GCAAATGCA----GTA-----TTAATTGC--------------------------ACCTAC
droEle1 scf7180000491249:2976372-2976663 - T-AGAGTGAAG---TTGAGT-----TAA-----GTTGAG---T--T---TTT---CTC-----GCA--G----------------ACACCC--------ATATTTGCATTATGCAATCTCAA-ACCATTCACGCACAC-AC--AAAA------AT------------------------------------------------------------AACAA---CAACAGC------A---AAAG---CAGCAG-CAACCA---------------------------------------------------CA-------ACAAGCAGCAAT--TATAAGCTTTAATGTCT-TACTAAAACAA------------------CAAACTTCACGCATTTTACCCTCTTAAAA--AAT---------------------ATAAA-----A-AA---AAAAACACAAAACATCAAAATGCAA-------CA-----------------------------------CA------------------ACAGCCACAGCGAA------CAGCCAAAGT---CGAGGAAAAGCTG--------------------GCAAATGCA----GTA-----TTAATTGC--------------------------ACCTAC
droRho1 scf7180000780001:4796-5008 - G-----------------------------------------C--T---TAC---CTC-----CTC--A----------------GCACTC--------AC---CGCCTTGTGCTCCCCAGC-AAC--------A---G--------------------------------------------------C-------------------------AGCAA---TTTTTGC------AACAG------CAACAG----GAACAACAGCGT------------TTCCTACAACAGCAACAGCAGCAATTTCTTCA-------GC-------------------AACAGCA-----ACTGCAACAG------------------CAAT-----------TTCAACTTCCA-------C---------------------------------------------------------------------------------------------------AGCAGCAACAACAACTTCAGCAGCAACAGCA---------A----------CTTCAGC--------A---------------------------GCAACAGCA----ATT-----GCAGCAGC--------------------------AACAAC
droFic1 scf7180000454105:769285-769583 + T-AGATTGGA----TTGAGTTGGCCTGAGCTGAGCTGAG---T--T---TTT---CTC-----CCA--G----------------ACCCCCT------TATATTTGCATTATGCAATCGACA-ACCGTTCACGCACAC-AA--AAAG----AAACG-------------------------------------------------------------ACA---CAGCAGC------A---G------CAGCAG-CAACCA---------------------------------------------------CA-------ACAAGCGGCAAT--CATAAGCTTTAATGTCT-TACTAAAACAA------------------CAAACTCCACGCATTTTACCCTCTTGAAA----T------------------CACACAA---AACAAAAAAACCAAA-CCCAAACATCAAAATGCAA--------------------------------------------CA------------------ACAGCC------AA------CAGCCAAAGC---CGAGGAAAAGCTG--------------------GCAAATGCA----GTA-----TTAATTGC--------------------------ACCTAC
droKik1 scf7180000302441:1307473-1307718 - G-AGATTTGAGATCTTGAGT---CTTAAGTT---TTGAG---TCTT---TTTCTTC--------------------------------CCC--------TTGTGATTATTATGCAATCGAA--ACCTTTCACGAA-----------A-----AACA--------------------------------------------------------------------AAC------------------------AGCAAACCA---------------------------------------------------CAA-----CACAAGCCGCAAT--CATATGCTTTAATGTCTTTACTATATCAACAAAACAAAATCAAACAAAAAACTCCACGCATTA-------CAAAAA--AA------------------------------------------------------------------------------------------------------------TA------------------ACAGCC------AG---CAGCAGCCAAAGA---GGAGGAAAAGCTG--------------------GCAAATGCA----GTA-----TTAGTTGC--------------------------ACCAAC
droAna3 scaffold_13337:480970-481248 + dan_2317 T-AGATTGCAG-----------------------CTGGG---T--T---T-----CCC-----CAA--A----------------GCGCCC--------ATATTTGCATTATGCAATCGAA--CCCCTTCACGCACAC-AC--CAAC-----AACAG--------------------------------C---AAT---AGC-------------AACAG---CAACAGC------G---ACACCAGCAACAC-AAACCA---------------------------------------------------CA-------ACAAGCCGCATT--CATGTGCTTCAAAGTCT-TACTATATCAA-------------------------CACGCATTTTCCACTCTCAAAA--AAC---------------------ACAAA-----CA-------------------------CCCAA-------CT-----------------------------------CA------------------TCAGCC------AGCAGCAGCAGCAGCAGT---CGAGGAAAAGCAGACATCGTAT-----CTGCCGCTAAATGCA----GTT-----TTAGTTGC--------------------------ACCTTT
droBip1 scf7180000395155:278165-278450 - T-AGATTGCAC-----------------------CTGGG---T--T---TCC---CCT-----TAA--G----------------CTTCCC--------ATATTTGCATTATGCAATCTCGAACCCCTTCACGCTCAC-ACACCACC-----AACAT--------------------------------CA---------GC-------------TACAG---CAACACC------A---G------CAACAG-AAACCA---------------------------------------------------CA-------ACAAGCTGCATT--CATATGCTTTAAAGTCT-TACTATATCAA-------------------------CACGCATTTTCCA-TCCTCAACCAAAC---------------------ACAAA-----CA-------------------------CCCAA-------CT-----------------------------------CA------------------TCAGCCACCACCAGCAGCATTAGCAGCAGTCTCCGAAGAAAAGCAGACATCGTAT-----CTGCCGCTAAATGCA----GTA-----TTAGTTGC--------------------------ACCTTC
dp5 XL_group1a:4451323-4451565 - C-TGACT--------------------------------------T---TCT---TCC-----CCAAAAATTGTCGTCAGGTAAAC---TGACG-----ACAAATGC----TACAACTACAA--CT--------A-----------C-------------------------------------------------------AACTAAAAACAACTACTA---CTACAAC------A---A------CAACAA-CAACAA---------------------------------------------------CA-------ACAAC-----------------------------------------------------------------------GTTTACTCCCA--A--CAAACAAACAACAACAACTAC-------------A-----------------ATACCAA----CAA-------CTCAACAACAACTCTAT--------------------CA------------CCAACAACA---------AA------T----AAAAC------TAC-AAACCG----------------------------A----ACA-----GCAATCACAAATGCCCCTGGCATCTGTGGCCTTAACCTCT
droPer2 scaffold_33:432649-432872 + ---------------------------------------------------------------------------------------------------------GCATTATGCAATCGAAA-AT----------------------------ACAA--------------------------------CA---------GC-------------AACAA---CAACAAC------A---A------CAACAA-CAACAA---------------------------------------------------CA-------ACAACAAGAAATCCCACATGCTTTAATGTCT------------------------------------CCACGCATT-TACCCCCTCAAAA--AAA---------------------ACACA-----T--------------------GCAACATGCAACATGC-------------------------------AGCAGCAGCAGCAGCAACAACAGCAACAACA---------AGCAGCAGCCGCAACAGC---AGGGGAAAAGCTC-----------------CCACCAAATGCA----GCC-----TTAATTGC--------------------------GCCTAC
droWil2 scf2_1100000004515:3267188-3267403 - G-ACAACAACA-----------------------ACAA-------------C---AAC-----TTG--C-------------AAAC---CAACG-----ACAACCAC--------------------------------AA--CAAC-----GACA--------------------------------------------AC-------------AACAA---CTACAACCACGACAACAA------CAACAA----CAACTA------------------------------------------------CAACCACG-AC-----GAC----------------------GACGACAACAA------------------CA------ACA-ACT----------T--G--CAAACCAACAACAACGACAAC-------------A-----------------ACAACAACTTGCAA-------ACCAACAACAACGACAA--------------------CA------------------A-------------------CAACTACAAC---CA---------CG--------------------ACAACAACA----ACA-----ACAACTAC--------------------------AACCAC
droVir3 scaffold_12875:5172031-5172310 - A-AGATCGATG-----------------------CCGAGCAGT--T---TTT---CCATCAGCACA--C----------------GTTACC--------AAAATGGCGCGAGACGGCCGCAA--TG--------A-----------T-------------------------------------------------------GGCCAACAGCAGCAGCAA---TCACAGC------G---G------CAGCAG-CAATCACAGCAGCAACTATCGCAAAGTCTCGCGCAACAAAAACA------------------------ATCGCCACA----------------------------------------------------------AATCGAATAACCAAAATCAA------------------------------------------------------------AAGTTGCAACA-GCAA-----------CATGCGCATCATGGCCATAATAGTAGTAGTAGTCTAAGTAGCACTAACA---------AACAAAA-----------------------------------------------ACAACAACAATTAGCATTAGTACGAAAAC--------------------------AACAAC
droMoj3 scaffold_6482:2355283-2355533 + G-AGCTGC---------------------------GCAG---C--A---GTT---CCC-----CCA--C----------------ACAGCA--------GCAGAAACAGTATTATAACTATG-G-----------------------------------------------------------------T-------------------------AGCAA---TCATAGC------AATAA------CAACAA----CAACTACAAGGC------------AGCATGCAGTGACAACA------------------------ATGCCGAAGA--TACAAGCAATGATGTCT-CTGA--AATT----------------------------GGCACCATATCCGACTTAAC--CAC------------------G--CC--------AGAGGC-----AC-----TCA-----TTACGG--------------------------------------------CC------------------ACGGC------CAA------C-----GAGT---TAACGAACTGTGC-------GGCCACTTCACCGCCACTTGCA----GCA-----GCAACACC--------------------------AACCAC
droGri2 scaffold_15252:12929444-12929691 - ----ATTGCAG-----------------------CAGCA---T--T---TGT---CGC-----CCA--T----------------ACATCAGCA-----ACAGTCGCCTCAT----------------------------------C-----AGCAGCAATCCCATTTGACCAGCTATGCGCAGCAGAGCAGCAA---------TCAACAAC---AGCAGCAACAACAAC------A---A------CAGCAG-CAGCAA---------------------------------------------------CA-------T----CAGCAA----------T--------------------------------------------TTGATGCATTTGCCAATATTTTAG--CAGAC-------------------AC--------------------------ACAGCAACAGGCAACA-GCAA-----------CAGGAG--------------------CA------------------GCAG----------------CAGCAACTGT---TGTTGC-AAGCCA--------------------GCAAATAAT----GTC-----GCCAGCGC--------------------------ATGTGA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droEre2
T-AGATTGGAG-----------------------CTGAG---T--T---TTT---CCC-----CCA--G----------------ACACCC--------ATATTTGCATTATGCAATCCAAA-ACC--------A---A-------AACCAAAACA--------------------------------------------AC-------------AGCAA---CAACAGC------A---A------CAGCAG-CAACCA---------------------------------------------------CA-------ACAAGCAGCAAT--CATAAGCTTTAATGTCT-CACTAAAACAA------------------CAAACTCCACGCATTTTACCCTCCTAAAA-AAAT---------------------ACAAA----------A-----AT-----ACATCAAAATGCT---------------------------------------------CA------------------GCAGC---------------CAGCCAAAGT---CGAGGAAAAGCTG--------------------GCAAATGCA----GTA-----TTAATTGC--------------------------ACCTACSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.................................................................................................................................................................................................................................ACAGC------A---A------CAGCAG-CAACCA---------------------------------------------------......................................................................................................................................................................................................................................................................................................................................................................1950.2011000000
............................................................................................................................................................................................................................................A---A------CAGCAG-CAACCA---------------------------------------------------CA-------AC...........................................................................................................................................................................................................................................................................................................................................................1850.2010000010
.......................................................................................................................................................................................................................AGCAA---CAACAGC------A---A------CAGCAG-CA.............................................................................................................................................................................................................................................................................................................................................................................................................................22160.0610000010
.........................................................................................................................................................................................................................CAA---CAACAGC------A---A------CAGCAG-C..............................................................................................................................................................................................................................................................................................................................................................................................................................19200.0511000000
.........................................................................................................................................................................................................................CAA---CAACAGC------A---A------CAGCAG-CA.............................................................................................................................................................................................................................................................................................................................................................................................................................20200.0510100000
........................................................................................................................................................................................................................GCAA---CAACAGC------A---A------CAGCAG-C..............................................................................................................................................................................................................................................................................................................................................................................................................................20200.0510100000
droYak3
T-AGATTGGAG-----------------------CTGCT---T--T---TTT---TCCCCC--CCAAAG----------------ACACCC--------ATATTTGCATTATGCAATCCAAA-ACC--------A---A--AACAAAACCAAAA-----------------------------------CA---------GC-------------ACCAA---CAACAGC------A---A------CAGCAG-CAACCA---------------------------------------------------CA-------ACAAGCAGCAAT--CATAAGCTTTAATGTCT-CACTAAAACAAC---------------AACAAACTCCACGCATTTTACCCTCCTAAAA--AAT---------------------ACAAA----------A-----AT-----ACATCGAAATGCAA--------------------------------------------CA------------------GCAGC---------------CAGCCAAAGT---CGAGGAAAAGCTG--------------------GCAAATGCA----GTA-----TTAATTGC--------------------------ACCT--SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGC---------------CAGCCAAAGT---CGAGGA........................................................................................1911.00100000010000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-----ACATCGAAATGCAA--------------------------------------------CA------------------GCAGC---------------CAGCC......................................................................................................2711.00101000000000
......................................................................................CACCC--------ATATTTGCATTATGCAATCCA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.00101000000000
droSec2
T-AGATTGGAG-----------------------CCGAG---T--T---TTT---CCC-----CCA--G----------------ACACCC--------ATATTTGCATTATGCAATCCAAA-ACC--------A---A-------------------------------------------------------------------------------AA---CAACAGC------A---A------CAGCAG-CAACCA---------------------------------------------------CA-------ACAAGCAGCAAT--CATAAGCTTTAATGTCT-CACTAAAAC-------------------------TCCACGCATTTTACCCTCCTAAAA--AAT---------------------A----ACAACAAAAAA-----AC-----ACATCAAAATGCTA--------------------------------------------CA------------------GCAGA---------------CAGCCAAAGT---CGAGGAAAAGCTG--------------------GCAAATGCA----GTA-----TTAATTGC--------------------------ACCTACSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
No Reads
droSim2
T-AGATTGGAG-----------------------CCGAG---T--T---TTT---CCC-----CCA--G----------------ACACCC--------ATATTTGCATTATGCAATCCAAA-ACC--------A---A-------------------------------------------------------------------------------AA---CAACAGC------A---A------CAGCAG-CAACCA---------------------------------------------------CA-------ACAAGCAGCAAT--CATAAGCTTTAATGTCT-CACTAAAAC-------------------------TCCACGCATTTTACCCTCCTAAAA--AAT------------------G--ACA--ACAACAAAAAA-----AC-----ACATCAAAATGCTA--------------------------------------------CA------------------GCAGA---------------CAGCCAAAGT---CGAGGAAAAGCTG--------------------GCAAATGCA----GTA-----TTAATTGC--------------------------ACCTACSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
....................................................................................................................................................................................................................................GC------A---A------CAGCAG-CAACCA---------------------------------------------------CA-------.............................................................................................................................................................................................................................................................................................................................................................1831.00300003000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TG--------------------GCAAATGCA----GTA-----TTAA....................................1811.00100001000000000000
dm3
T-AGATTGGAG-----------------------CCGAG---T--TTTTTTT---CCC-----CCA--G----------------ACACCC--------ATATTTGCATTATGCAATCCAAA-ACC--------A---A----------------------------------------------------------------------------AACAA---CAACAGC------A---A------CAGCAG-CAACCA---------------------------------------------------CA-------ACAAGCAGCAAT--CATAAGCTTTAATGTCT-CACTAAAAC-------------------------TCCACGCATTTTACCCTCCTAAAA--AAT------AAT---------A--ACA--ACAACAAAA---AAAAAC-----ACATCAAAATGCTA--------------------------------------------CA------------------GCAGA---------------GAGCCAAAGT---CGAGGAAAAGCTG--------------------GCAAATGCA----GTA-----TTAATTGC--------------------------ACCTACSizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAGT---CGAGGAAAAGCTG--------------------GC...........................................................2012.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAGT---CGAGGAAAAGCTG--------------------GCA..........................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................CACGCATTTTACCCTCCTAAAA--AAA------........................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T---CGAGGAAAAGCTG--------------------GCAAATGCA----GTA-----TT......................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAC-----ACATCAAAATGCTA--------------------------------------------CA------------------...............................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GT---CGAGGAAAAGCTG--------------------GCAAATGCA----G...............................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CA------------------GCAGA---------------GAGCCAAAGT---CGAG..........................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................ACAGC------A---A------CAGCAG-CAACCA---------------------------------------------------......................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TA--------------------------------------------CA------------------GCAGA---------------GAGCCAAAGT---CG............................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCCAAAGT---CGAGGAAAAGCT..................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAAGT---CGAGGAAAAGCTG--------------------.............................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................GCATTTTACCCTCCTAAAA--AA...............................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................TGCATTATGCAATCCAAA-ACC--------A---A----------------------------------------------------------------------------AACAA---C.............................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................CCACGCATTTTACCCTCCTAAAA--AA...............................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAAAGT---CGAGGAAAAGCTG--------------------GCAAAA.......................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGAAAAGCTG--------------------GCAAATGCA----GTA-----TT......................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000
....ATTGGAG-----------------------CCGAG---T--TTTTTTT---CCC-----CCA--G----------------AC......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGGAAAAGCTG--------------------GCAAATGCA----GTA-----TTA.....................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAAGT---CGAGGAAAAGCTG--------------------G............................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCAAAGT---CGAGGAAAAGCTG--------------------GC...........................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................TTACCCTCCTAAAA--AAT------AAT---------............................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................ATTATGCAATCCAAA-ACC--------A---A----------------------------------------------------------------------------AACAA---C.............................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................A---CAACAGC------A---A------CAGCAG-CAAC...........................................................................................................................................................................................................................................................................................................................................................................................................................20170.4170000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100600000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................CAACAGC------A---A------CAGCAG-CAAC...........................................................................................................................................................................................................................................................................................................................................................................................................................19200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000010000000000000000000000000000
.......................................................................................................................................................................................................................AACAA---CAACAGC------A---A------CAGCAG-...............................................................................................................................................................................................................................................................................................................................................................................................................................20200.1020000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................ACAA---CAACAGC------A---A------CAGCAG-CAA............................................................................................................................................................................................................................................................................................................................................................................................................................22120.0810000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000
.......................................................................................................................................................................................................................AACAA---CAACAGC------A---A------CAGCAG-CA.............................................................................................................................................................................................................................................................................................................................................................................................................................22190.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
..........................................................................................................................................................................................................................AA---CAACAGC------A---A------CAGCAG-CAA............................................................................................................................................................................................................................................................................................................................................................................................................................20190.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................CAA---CAACAGC------A---A------CAGCAG-C..............................................................................................................................................................................................................................................................................................................................................................................................................................19200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
droEug1
T-AGATTGGAG-----------------------CTGAC---T--T---TTCC--TTC-----CCA--G----------------ACCCCC--------ATATTTGCATTATGCAATCCCAAACCCATTCACGCACAC-AC--CAAAACCAACA-----------------------------------CAGCACTAACAGC-------------AGCAG---CAACAGC------A---A------CAGCAG-CGACCA---------------------------------------------------CA-------ACAAGCAGCAAT--CATAAGCTTTAATGTCT-TACTAAAACAA------------------CAAACTCCACGCATTTTACCCTCTTAAAA--AAC---------------------C-A--ACAACACAA------AA-CCAAAACATCAAAATGCAA--------------------------------------------CA------------------GCAGC---------------CAGCCAAAGT---CGTGGAAAAGCTG--------------------GCAAATGCA----GTA-----TTAATTGC--------------------------ACCTACSizeHit CountTotal NormTotal
No Reads
droBia1
T-AGATTGGAG-----------------------CAGAG---T--T---TTT---CTC-----CCATAG----------------ACCCCC--------ATATTTGCATTATGCAATCCAAAAACCATTCACGCACAC-AC--CAAA-----AACAA--------------------------------CA---------GC-------------AACAG---CAACATC------A---A------CAGCAG-CAACCA---------------------------------------------------CAA------ACAAGCAGCAAT--CATAAGCTTTAATGTCT-TACTAAAACAA------------------CAAACTCCACGCACTTTACCCTCTTAAAA--AAT---------------------AC----------------------------AACAAAATACGAA------AA-----------------------------------CA------------------ACAGC---------------CAGCCAAAGT---CGAGGAAAAGCTG--------------------GCAAATGCA----GTA-----TTAATTGC--------------------------ACCTACSizeHit CountTotal NormTotal
No Reads
droTak1
TTAGATTGGAG-----------------------CTGCG---T--T---TTT---CTC-----CCA--G----------------GCCCCCCCCCTCCTATATTTGCATTATGCAATCCCAA-ACCATTCACGCACAC-AC--CAAA-----AACA--------------------------------------------AC-------------AACAG---CCACAGC------A---G------CAGCAG-CAACCA---------------------------------------------------CA-------ACAAGCAGCAAT--CATAAGCTTTAATGTCT-TACTAAAACAA------------------CAAAATCCACGCATTTTACCCTCTTAAAA--AAT---------------------ACAAA-----A--------------------ACAAAATACAA-------AA-----------------------------------CA------------------ACAGC---------------CAGCCAAAGT---CGAGGAAAAGCTG--------------------GCAAATGCA----GTA-----TTAATTGC--------------------------ACCTACSizeHit CountTotal NormTotal
No Reads
droEle1
T-AGAGTGAAG---TTGAGT-----TAA-----GTTGAG---T--T---TTT---CTC-----GCA--G----------------ACACCC--------ATATTTGCATTATGCAATCTCAA-ACCATTCACGCACAC-AC--AAAA------AT------------------------------------------------------------AACAA---CAACAGC------A---AAAG---CAGCAG-CAACCA---------------------------------------------------CA-------ACAAGCAGCAAT--TATAAGCTTTAATGTCT-TACTAAAACAA------------------CAAACTTCACGCATTTTACCCTCTTAAAA--AAT---------------------ATAAA-----A-AA---AAAAACACAAAACATCAAAATGCAA-------CA-----------------------------------CA------------------ACAGCCACAGCGAA------CAGCCAAAGT---CGAGGAAAAGCTG--------------------GCAAATGCA----GTA-----TTAATTGC--------------------------ACCTACSizeHit CountTotal NormTotal
No Reads
droRho1
G-----------------------------------------C--T---TAC---CTC-----CTC--A----------------GCACTC--------AC---CGCCTTGTGCTCCCCAGC-AAC--------A---G--------------------------------------------------C-------------------------AGCAA---TTTTTGC------AACAG------CAACAG----GAACAACAGCGT------------TTCCTACAACAGCAACAGCAGCAATTTCTTCA-------GC-------------------AACAGCA-----ACTGCAACAG------------------CAAT-----------TTCAACTTCCA-------C---------------------------------------------------------------------------------------------------AGCAGCAACAACAACTTCAGCAGCAACAGCA---------A----------CTTCAGC--------A---------------------------GCAACAGCA----ATT-----GCAGCAGC--------------------------AACAACSizeHit CountTotal NormTotal
No Reads
droFic1
T-AGATTGGA----TTGAGTTGGCCTGAGCTGAGCTGAG---T--T---TTT---CTC-----CCA--G----------------ACCCCCT------TATATTTGCATTATGCAATCGACA-ACCGTTCACGCACAC-AA--AAAG----AAACG-------------------------------------------------------------ACA---CAGCAGC------A---G------CAGCAG-CAACCA---------------------------------------------------CA-------ACAAGCGGCAAT--CATAAGCTTTAATGTCT-TACTAAAACAA------------------CAAACTCCACGCATTTTACCCTCTTGAAA----T------------------CACACAA---AACAAAAAAACCAAA-CCCAAACATCAAAATGCAA--------------------------------------------CA------------------ACAGCC------AA------CAGCCAAAGC---CGAGGAAAAGCTG--------------------GCAAATGCA----GTA-----TTAATTGC--------------------------ACCTACSizeHit CountTotal NormTotal
No Reads
droKik1
G-AGATTTGAGATCTTGAGT---CTTAAGTT---TTGAG---TCTT---TTTCTTC--------------------------------CCC--------TTGTGATTATTATGCAATCGAA--ACCTTTCACGAA-----------A-----AACA--------------------------------------------------------------------AAC------------------------AGCAAACCA---------------------------------------------------CAA-----CACAAGCCGCAAT--CATATGCTTTAATGTCTTTACTATATCAACAAAACAAAATCAAACAAAAAACTCCACGCATTA-------CAAAAA--AA------------------------------------------------------------------------------------------------------------TA------------------ACAGCC------AG---CAGCAGCCAAAGA---GGAGGAAAAGCTG--------------------GCAAATGCA----GTA-----TTAGTTGC--------------------------ACCAACSizeHit CountTotal NormTotal
No Reads
droAna3
T-AGATTGCAG-----------------------CTGGG---T--T---T-----CCC-----CAA--A----------------GCGCCC--------ATATTTGCATTATGCAATCGAA--CCCCTTCACGCACAC-AC--CAAC-----AACAG--------------------------------C---AAT---AGC-------------AACAG---CAACAGC------G---ACACCAGCAACAC-AAACCA---------------------------------------------------CA-------ACAAGCCGCATT--CATGTGCTTCAAAGTCT-TACTATATCAA-------------------------CACGCATTTTCCACTCTCAAAA--AAC---------------------ACAAA-----CA-------------------------CCCAA-------CT-----------------------------------CA------------------TCAGCC------AGCAGCAGCAGCAGCAGT---CGAGGAAAAGCAGACATCGTAT-----CTGCCGCTAAATGCA----GTT-----TTAGTTGC--------------------------ACCTTTSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAGT---CGAGGAAAAGCA..................................................................................2012.002000002
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAGCAGT---CGAGGAAAAGCAGACA..............................................................................2712.002000002
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAGT---CGAGGAAAAGCAGACATC............................................................................2611.001000001
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAGT---CGAGGAAAAGCA..................................................................................2111.001100000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAGCAGCAGT---CGAGGAAAAGCA..................................................................................2711.001000001
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAGT---CGAGGAAAAGC...................................................................................1911.001000001
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAGCAGT---CGAGGAAAAGC...................................................................................2211.001000010
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCAGCAGT---CGAGGAAAAGCAGA................................................................................2211.001000010
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCAGCAGCAGCAGCA...................................................................................................16200.051000100
droBip1
T-AGATTGCAC-----------------------CTGGG---T--T---TCC---CCT-----TAA--G----------------CTTCCC--------ATATTTGCATTATGCAATCTCGAACCCCTTCACGCTCAC-ACACCACC-----AACAT--------------------------------CA---------GC-------------TACAG---CAACACC------A---G------CAACAG-AAACCA---------------------------------------------------CA-------ACAAGCTGCATT--CATATGCTTTAAAGTCT-TACTATATCAA-------------------------CACGCATTTTCCA-TCCTCAACCAAAC---------------------ACAAA-----CA-------------------------CCCAA-------CT-----------------------------------CA------------------TCAGCCACCACCAGCAGCATTAGCAGCAGTCTCCGAAGAAAAGCAGACATCGTAT-----CTGCCGCTAAATGCA----GTA-----TTAGTTGC--------------------------ACCTTCSizeHit CountTotal NormTotal
No Reads
dp5
C-TGACT--------------------------------------T---TCT---TCC-----CCAAAAATTGTCGTCAGGTAAAC---TGACG-----ACAAATGC----TACAACTACAA--CT--------A-----------C-------------------------------------------------------AACTAAAAACAACTACTA---CTACAAC------A---A------CAACAA-CAACAA---------------------------------------------------CA-------ACAAC-----------------------------------------------------------------------GTTTACTCCCA--A--CAAACAAACAACAACAACTAC-------------A-----------------ATACCAA----CAA-------CTCAACAACAACTCTAT--------------------CA------------CCAACAACA---------AA------T----AAAAC------TAC-AAACCG----------------------------A----ACA-----GCAATCACAAATGCCCCTGGCATCTGTGGCCTTAACCTCTSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
No Reads
droPer2
---------------------------------------------------------------------------------------------------------GCATTATGCAATCGAAA-AT----------------------------ACAA--------------------------------CA---------GC-------------AACAA---CAACAAC------A---A------CAACAA-CAACAA---------------------------------------------------CA-------ACAACAAGAAATCCCACATGCTTTAATGTCT------------------------------------CCACGCATT-TACCCCCTCAAAA--AAA---------------------ACACA-----T--------------------GCAACATGCAACATGC-------------------------------AGCAGCAGCAGCAGCAACAACAGCAACAACA---------AGCAGCAGCCGCAACAGC---AGGGGAAAAGCTC-----------------CCACCAAATGCA----GCC-----TTAATTGC--------------------------GCCTACSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
..........................................................................................................................................................................................................................................................CAA-CAACAA---------------------------------------------------CA-------ACAACAAGA....................................................................................................................................................................................................................................................................................................................................................20200.051001000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGCAGCAGCAGCAACAACA.....................................................................................................................................20200.051001000
...............................................................................................................................................................................................................................CAACAAC------A---A------CAACAA-CAACAA---------------------------------------------------......................................................................................................................................................................................................................................................................................................................................................................21200.051001000
.........................................................................................................................................................................................................C-------------AACAA---CAACAAC------A---A------CAACAA-CAACAA---------------------------------------------------C.....................................................................................................................................................................................................................................................................................................................................................................28200.051010000
droWil2
G-ACAACAACA-----------------------ACAA-------------C---AAC-----TTG--C-------------AAAC---CAACG-----ACAACCAC--------------------------------AA--CAAC-----GACA--------------------------------------------AC-------------AACAA---CTACAACCACGACAACAA------CAACAA----CAACTA------------------------------------------------CAACCACG-AC-----GAC----------------------GACGACAACAA------------------CA------ACA-ACT----------T--G--CAAACCAACAACAACGACAAC-------------A-----------------ACAACAACTTGCAA-------ACCAACAACAACGACAA--------------------CA------------------A-------------------CAACTACAAC---CA---------CG--------------------ACAACAACA----ACA-----ACAACTAC--------------------------AACCACSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.......................................................................................................................................................................................................................................................................................................................................GAC----------------------GACGACAACAA------------------CA------ACA-AC..................................................................................................................................................................................................................................................................................21200.20440000
........................................................................................................................................................................................................................................................AACAA----CAACTA------------------------------------------------CAACCACG-AC-----GAC----------------------GACG.........................................................................................................................................................................................................................................................................................................................2860.17100100
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACAA--------------------CA------------------A-------------------CAACTACAAC---CA---------CG--------------------.............................................................2260.17100100
........................................................................................................................................................GACA--------------------------------------------AC-------------AACAA---CTACAACCACG...................................................................................................................................................................................................................................................................................................................................................................................................................................................2260.17100100
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACGACAA--------------------CA------------------A-------------------CAACTACAAC---CA---------CG--------------------A............................................................2960.17101000
...........................................................................................................................................AA--CAAC-----GACA--------------------------------------------AC-------------AACAA---CTACAACCACGA..................................................................................................................................................................................................................................................................................................................................................................................................................................................2960.17101000
.......................................................................................................................................................................................................................................................................................................................................GAC----------------------GACGACAACAA------------------CA------ACA-ACT----------.......................................................................................................................................................................................................................................................................2270.14110000
.........................................................................................................................................................................................................................................................................................................................................C----------------------GACGACAACAA------------------CA------ACA-ACT----------T--G--CA...............................................................................................................................................................................................................................................................2470.14101000
...........................................................................................................................................................................................................................................................AA----CAACTA------------------------------------------------CAACCACG-AC-----GAC----------------------GACG.........................................................................................................................................................................................................................................................................................................................2570.14100100
.........................................................................................................................................................................................................................................................................................................................................C----------------------GACGACAACAA------------------CA------ACA-ACT----------T--G--C................................................................................................................................................................................................................................................................2370.14101000
....................................................................................................................................................................................................................................................................CTA------------------------------------------------CAACCACG-AC-----GAC----------------------GACGA........................................................................................................................................................................................................................................................................................................................2180.13100100
..................................................................................................................................................................................................................................................................AACTA------------------------------------------------CAACCACG-AC-----GAC----------------------GACGAC.......................................................................................................................................................................................................................................................................................................................2480.13100100
..................................................................................................................................................................................................................................................................................................................................................................................................................................AACAACAACGACAAC-------------A-----------------ACAACAACTT...................................................................................................................................................................................................2690.11101000
................................................................................................................................................................................................................................................................................................................................................................GACGACAACAA------------------CA------ACA-ACT----------.......................................................................................................................................................................................................................................................................19130.08101000
.................................................................................................................................................................................................................................................................................................................................................................ACGACAACAA------------------CA------ACA-ACT----------T--G--C................................................................................................................................................................................................................................................................21160.06101000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................ACGACAAC-------------A-----------------ACAACAACTTGC.................................................................................................................................................................................................21160.06101000
...........................................................................................................................................................................................................................................................................................................................CACG-AC-----GAC----------------------GACGACAAC....................................................................................................................................................................................................................................................................................................................18170.06110000
droVir3
A-AGATCGATG-----------------------CCGAGCAGT--T---TTT---CCATCAGCACA--C----------------GTTACC--------AAAATGGCGCGAGACGGCCGCAA--TG--------A-----------T-------------------------------------------------------GGCCAACAGCAGCAGCAA---TCACAGC------G---G------CAGCAG-CAATCACAGCAGCAACTATCGCAAAGTCTCGCGCAACAAAAACA------------------------ATCGCCACA----------------------------------------------------------AATCGAATAACCAAAATCAA------------------------------------------------------------AAGTTGCAACA-GCAA-----------CATGCGCATCATGGCCATAATAGTAGTAGTAGTCTAAGTAGCACTAACA---------AACAAAA-----------------------------------------------ACAACAACAATTAGCATTAGTACGAAAAC--------------------------AACAACSizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTAGTAGTAGTCTAAGTAGCACTAACA---------...................................................................................................................2711.001000000000000000000000000000000010000000000000000000000000000000
droMoj3
G-AGCTGC---------------------------GCAG---C--A---GTT---CCC-----CCA--C----------------ACAGCA--------GCAGAAACAGTATTATAACTATG-G-----------------------------------------------------------------T-------------------------AGCAA---TCATAGC------AATAA------CAACAA----CAACTACAAGGC------------AGCATGCAGTGACAACA------------------------ATGCCGAAGA--TACAAGCAATGATGTCT-CTGA--AATT----------------------------GGCACCATATCCGACTTAAC--CAC------------------G--CC--------AGAGGC-----AC-----TCA-----TTACGG--------------------------------------------CC------------------ACGGC------CAA------C-----GAGT---TAACGAACTGTGC-------GGCCACTTCACCGCCACTTGCA----GCA-----GCAACACC--------------------------AACCACSizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
No Reads
droGri2
----ATTGCAG-----------------------CAGCA---T--T---TGT---CGC-----CCA--T----------------ACATCAGCA-----ACAGTCGCCTCAT----------------------------------C-----AGCAGCAATCCCATTTGACCAGCTATGCGCAGCAGAGCAGCAA---------TCAACAAC---AGCAGCAACAACAAC------A---A------CAGCAG-CAGCAA---------------------------------------------------CA-------T----CAGCAA----------T--------------------------------------------TTGATGCATTTGCCAATATTTTAG--CAGAC-------------------AC--------------------------ACAGCAACAGGCAACA-GCAA-----------CAGGAG--------------------CA------------------GCAG----------------CAGCAACTGT---TGTTGC-AAGCCA--------------------GCAAATAAT----GTC-----GCCAGCGC--------------------------ATGTGASizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
.....................................................................................................................................................................................CAGCAGAGCAGCAA---------TCAACA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.00211

Generated: 05/17/2015 at 10:46 PM