ID:

der_656

 Coordinate:

scaffold_4770:16619260-16619410 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-7.5 -7.3 -7.2

Flybase annnotation

CDS [Dere\GG17394-cds]; exon [dere_GLEANR_2283:1]; intron [Dere\GG17394-in]

No Repeatable elements found

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
TACATCACTGGCTGGGACCAATCCGCTCCAAGGAGCTAAAGGAGCATATTGTAAGTTCCTCCAAGCCCGGAAATCTGAAATTTTTTCGTGTCGATATGTGTAGAGGATTGAGCGTTAAATGTAAAGAACTATGTTTCGATGATGATTCAGGAAGTTACTTAACATTCGGAGAATAGGAACTTATCTTCATAAAAATAGGAAGTACAATGTACTCTATATACCATTTAGAGATTTCAGAGAACAAAGCATGA
**********************************************************************************************.....((((....((((((((((((((((......))))))....))))).)))))....)))).....**************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total V040
embryo
 V108
head
 M055
female body
 V107
male body		 V060
head
 M057
embryo
..................................................................................................................TTGAATGTAAAGAAGTATGTAT................................................................................................................... 22 3 7 2.29 16 16 0 0 0 0 0
...................................................................................................................TAAATGTAAAGAAGTATGG..................................................................................................................... 19 2 5 1.20 6 0 0 5 1 0 0
..................................................................................................................TTAAATGTAAAGAAGTATGG..................................................................................................................... 20 2 3 1.00 3 0 0 2 1 0 0
...............GCACAATCCGCTTCAAGGAGCTA..................................................................................................................................................................................................................... 23 3 1 1.00 1 1 0 0 0 0 0
..................................................................................................................TTGAATGTAAAGAACTATGTCG................................................................................................................... 22 3 1 1.00 1 1 0 0 0 0 0
.....CACTGGCTGGGACCAATCC................................................................................................................................................................................................................................... 19 0 1 1.00 1 0 0 0 0 0 1
........................................................................................................................................CGATGATGATTCAGGAAGTTACTTAAC........................................................................................ 27 0 1 1.00 1 0 1 0 0 0 0
..................................................................................................................TTGAATGTAAAGAACTATGGAT................................................................................................................... 22 3 3 1.00 3 3 0 0 0 0 0
..................................................................................................................TTAAATGTAAAGAAGTATGTATC.................................................................................................................. 23 2 1 1.00 1 1 0 0 0 0 0
..............................................................................................TATGTGTAGAGGATTGAGC.......................................................................................................................................... 19 0 1 1.00 1 0 1 0 0 0 0
..................................................................................................................TTAAATGTAAAGAACTATGTAG................................................................................................................... 22 2 1 1.00 1 0 0 0 0 1 0
..................................................................................................................TTGAATGTAAAGAACTATGTAT................................................................................................................... 22 2 1 1.00 1 1 0 0 0 0 0
.............................AAGGAGCTAAAGGAGCATATT......................................................................................................................................................................................................... 21 0 1 1.00 1 0 1 0 0 0 0
..................................................................................................................TTGAATGTAAAGAATTATGTAT................................................................................................................... 22 3 4 1.00 4 4 0 0 0 0 0
..................................................................................................................TTCAATGTAAAGAACTATGTAC................................................................................................................... 22 3 2 0.50 1 1 0 0 0 0 0
..................................................................................................................TTGAATGTCAAGAACTATGTAT................................................................................................................... 22 3 2 0.50 1 1 0 0 0 0 0
..................................................................................................................TCGAATGTAAAGAACTATGTAT................................................................................................................... 22 3 2 0.50 1 1 0 0 0 0 0
..................................................................................................................TTGAATGTAAACAACTATGTAT................................................................................................................... 22 3 2 0.50 1 1 0 0 0 0 0
..................................................................................................................TGGAATGTAAAGAACTATGTCT................................................................................................................... 22 3 2 0.50 1 1 0 0 0 0 0
..................................................................................................................TTAAATGTAAAGAAGTATGTAT................................................................................................................... 22 2 2 0.50 1 1 0 0 0 0 0
..................................................................................................................TTAAATGTAAAGAAGTATGTAG................................................................................................................... 22 3 8 0.38 3 0 3 0 0 0 0
...................................................................................................................TAAATGTAAAGAAGTATGGAT................................................................................................................... 21 3 11 0.36 4 0 0 4 0 0 0
..................................................................................................................TTGAATGTAAAGCACTATGTAT................................................................................................................... 22 3 3 0.33 1 1 0 0 0 0 0
..................................................................................................................TGAAATGTAAAGAACTATGTAT................................................................................................................... 22 2 3 0.33 1 1 0 0 0 0 0
..................................................................................................................TTGAATGTAAAGAACTATGTAA................................................................................................................... 22 3 3 0.33 1 1 0 0 0 0 0
..................................................................................................................TGAAATGTAAAGAACTATGGCT................................................................................................................... 22 3 3 0.33 1 1 0 0 0 0 0
..................................................................................................................TTTAATGTAAAGAATTATGTAT................................................................................................................... 22 3 11 0.27 3 3 0 0 0 0 0
..................................................................................................................TTCAATGTAAAGAAGTATGTCT................................................................................................................... 22 3 4 0.25 1 1 0 0 0 0 0
..................................................................................................................TTAAATGTAAAGAAGGATGTAT................................................................................................................... 22 3 4 0.25 1 1 0 0 0 0 0
..................................................................................................................TGGAATGTAAAGAATTATGTTT................................................................................................................... 22 3 5 0.20 1 1 0 0 0 0 0
..................................................................................................................TCAAATGTAAAGAACTATGGAT................................................................................................................... 22 3 5 0.20 1 1 0 0 0 0 0
..................................................................................................................TGGAATGTAAAGAAGTATGTTT................................................................................................................... 22 3 10 0.20 2 2 0 0 0 0 0
..................................................................................................................TAAAATGTAAAGAACTATGGAT................................................................................................................... 22 3 5 0.20 1 1 0 0 0 0 0
...................................................................................................................TGAATGTAAAGAAGTATGT..................................................................................................................... 19 2 5 0.20 1 0 0 0 1 0 0
..................................................................................................................TTTAATGTAAAGAAGTATGTAT................................................................................................................... 22 3 12 0.17 2 2 0 0 0 0 0
..................................................................................................................TTTAATGTAAAGAAGTATGGT.................................................................................................................... 21 3 6 0.17 1 1 0 0 0 0 0
..................................................................................................................TGAAATGTAAAGAACTATGTAC................................................................................................................... 22 3 6 0.17 1 1 0 0 0 0 0
.......................................................................................................................................ACGATGATGGTTCAGGTAGT................................................................................................ 20 3 6 0.17 1 0 0 0 1 0 0
..................................................................................................................TGAAATGTAAAGAACTATGGAT................................................................................................................... 22 3 6 0.17 1 1 0 0 0 0 0
...............................................................................................ATATGTGGAGGATTGAGCGC........................................................................................................................................ 20 3 7 0.14 1 0 0 0 1 0 0
..................................................................................................................TTGAATGTAAAGAAATATGTAT................................................................................................................... 22 3 12 0.08 1 1 0 0 0 0 0
.............................................................................................................................................ATGATAAGGGAAGTTACTT........................................................................................... 19 3 20 0.05 1 0 0 0 1 0 0
..................................................................................................................AGAAATGTAAAGAACTATCT..................................................................................................................... 20 3 20 0.05 1 0 0 0 0 1 0

Anti-sense strand reads

ATGTAGTGACCGACCCTGGTTAGGCGAGGTTCCTCGATTTCCTCGTATAACATTCAAGGAGGTTCGGGCCTTTAGACTTTAAAAAAGCACAGCTATACACATCTCCTAACTCGCAATTTACATTTCTTGATACAAAGCTACTACTAAGTCCTTCAATGAATTGTAAGCCTCTTATCCTTGAATAGAAGTATTTTTATCCTTCATGTTACATGAGATATATGGTAAATCTCTAAAGTCTCTTGTTTCGTACT
****************************************************************************************.....((((....((((((((((((((((......))))))....))))).)))))....)))).....********************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total V040
embryo
............................................................................................................................................................................................TTTTTTTATCCTTCATGTCCCA......................................... 22 3 2 1.50 3 3
.................................................................................................................................................................TGTAAACCCCTTATCCTTGCA..................................................................... 21 3 1 1.00 1 1
............................................................................................................................................................................................TTTTGTTATCCTTCATGTTCCA......................................... 22 3 3 0.33 1 1
.............................................................GTTCGGGCCTATAGCCTTA........................................................................................................................................................................... 19 3 9 0.11 1 1
............................................................................................................................................................................................TTTTTTTATCCTTCATGTTCCT......................................... 22 3 10 0.10 1 1
........................................................................................................................................................................................................................................AAGTGTCCGGTTTCGTACT 19 3 20 0.05 1 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droEre2 scaffold_4770:16619210-16619460 + der_656 TACATCACTGGCTGGGACCAATCCG---CTCCAAGGAGCTAAAGGAGCATATTGTAAGTTCCTCC----------------AAGCCCG--------GAA--------------------A------------------------------------------------------------------T-CTGAAATTTTT------------------------------------------------------------------TCGTGTCGAT-ATG------------TGTAG-AGGATTGAGC------------GT--------T---AAA--------------------------------------------------------------------------------------TGTAAA-----------------------------------------------GAACTATGTTTCGATGATGAT--------------------TCAGGAAGTTACTTAACAT-TCGGAGAAT--AGGAACTTA-----TCTTCATA-AAAATAGGA---------------------------------------------------------AGTACAA------TGTACTCTATATA----CCATTTA-GAGATTTCAGAGAACAAAGC-AT--GA
droYak3 3R:9030106-9030387 - TACATCACTGGCTGGGACCAATCCG---CTCCAAGGAGCTAAAGGAGCATATTGTAAGTTCCTCC----------------AAACCCG--------GAA--------------------ACAT--------------------------------T---TGTCGGTGGCG--CAATGATTCAGTGAT-CTGAAATGTTT------------------------------------------------------------------TCGAGTCGAT-AAG------------TTCTTT-GGATTGAGC------------AT--------T---AAA--------------------------------------------------------------------------------------TTTAAT-----------------------------------------------AATCTTTGTTTCGATGATGAT--------------------TCAAAAACTTATTTAACAT-ACAGATTAT--AGGAACATA---------CATAGAAAATAGGA---------------------------------------------------------AGTACAG------AATACTATATATATGTAC-CATTTAGAGATTGCATAGAACAATGAAAT--GA
droSec2 scaffold_0:16899120-16899389 + TACATCACTGGCTGGGACCAATCCG---CTCCAAGGAGCTAAAGGAGCATATTGTAAGTGCCTCA----------------GAAGCCA--------GAAACA-----------------ACAT--------------------------------G---CGTCGCAAGCT--AAATGTTTCACTGAT-CTGAAATGTTT------------------------------------------------------------------TCGAGTCGAT-AAG------------CATTGTAGCATTGAGC------------AT--------T------------------------------------------------------------------------------------------------AG-----------------------------------------------GAACTTTGTTGCGATAATGAT--------------------TTATAAAGTTATTTAAAAT-ACGAAGAAT--AGGAA-------------CATA-AAAATAGGA---------------------------------------------------------AGTACAA------GATACTATATATA----CTCATTT-GAGATTAAAGAGAACAAAGAAAA--GA
droSim2 3r:16031077-16031343 + dsi_3313 TACATCACTGGCTGGGACCAATCCG---CTCCAAGGAGCTAAAGGAGCATATTGTAAGTGCCTCA----------------GAAGCCA--------GAA--------------------ACAT--------------------------------T---CGTCGCAAACC--AAATGTTTCACTGAT-CTGAAATGTTT------------------------------------------------------------------TCGAGTCGAT-AAG------------CATTGTAGCATTGAGC------------AT--------A------------------------------------------------------------------------------------------------AG-----------------------------------------------GAACTTTGTTGCGATAATGAT--------------------TTATAAAGTTATTTAAAAT-ACGAAGAAC--GGGAA-------------CATA-AAAATAGGA---------------------------------------------------------AGTACAA------AATACTATATATA----CTCATTT-GAGATTAAAGAGAACAAAGAAAA--GA
dm3 chr3R:4982623-4982889 - TACATCACTGGCTGGGACCAATCCG---CTCCAAGGAGCTAAAGGAGCATATTGTAAGTGCCTCG----------------GAACCCA--------GAA--------------------ACAT--------------------------------C---CGTCGAAAGCT--AAATGTTTCACTGAT-CTGAAATGTTT------------------------------------------------------------------TCGAGTCGAT-AAG------------CATTGTAGCATTGAGC------------AA--------T------------------------------------------------------------------------------------------------TA-----------------------------------------------GAACTTTGCTCCGATAAAGGT--------------------T----------TTTAAAAT-ACGAAGAATATAGGAGCATA-----GGAACACA-AAAATAGGA---------------------------------------------------------AGTACAA------AATACTATATATA----CTCATTT-GAGATTACAGAGAACAAAGAAAA--GA
droEug1 scf7180000407340:144597-144924 + TACATCAGTGGCTGGGACCAATTCG---CACCAAAGAGCTTAAGGAGCATATTGTAAGTTTTTTTTTT--AAGTAACTTTAAAAACCATAAAGAAAAAA--------------------CCAG--------------------------------C---TGTTGAGAGTGGAAAATGATTCACTGATTCGGAAATGTTT------------------------------------------------------------------TCTAACTGAA-AAA------------CTTATGTGTTGGGAAGAAGATAGCGAGGGCTGTATGTAAAGGAATTTTG--------------------------------------------------------------------------------------TA-----------------------------------------------GAATTTTACTACGATTTGACT--------------------TCTTGAAGTT--TTATTTC-CTGAAGATA--AGGAGTTTG-----TCTCTGTAGTAAATGGTT---------------------------------------------------------AGTAGAA------ATATCTTT-AATG----CTTAAAG-AATGTTCTTAAGAACAAAGACAG--GA
droBia1 scf7180000302402:7708530-7708784 - TACATCAGTGGCTGGGACCAATCCG---CACCAAGGAGCTGAAGGAGCATATTGTAAGTTCCTCC----------------GAGCCCG--------AAA--------------------ACAT--------------------------------C---TGGCGATAAGG--CAGTGATTCACAGAT-CTGAAACGCTT------------------------------------------------------------------TCGAAACGGT-CAG------------ATCGTTTGCTTGGTAG------------AG--------AAGGAAT--------------------------------------------------------------------------------------TCT-AA-----------------------------------------------CAACTTGGTTTCGATAAGGGTAGCCCAAAGAACTGAAAAGTTTGAAATATTCTTTAAAAT-ACGAAGTAA------------------------------------------------------------------------------------------------A---------------------------ATAT-CAGATCGAAAAGAACAAATAAAA--C-
droTak1 scf7180000415364:162395-162681 + TACATCAGTGGCTGGGACCAATCCG---CACCAAAGAGCTAAAGGAGCATATTGTAAGTTCAGCC----------------GAACCCA--------CGAAAA-----------------ACAT--------------------------------C---TGTCGATAA-G--AAATGATTCACTGAT-CCGAAATACTT------------------------------------------------------------------TCAAGTCGAT-AAA------------CACATTTGCTTAAAA--AGATAACAATG-TTTTGTGAAAAAGAATTGGAATGA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATGAATTTTACATTCCAGTTTAC--AA-AATAT-----------------------------------------------------------ATTTTTAAAAATGTATAAATCTAA--TAGAATAGTATATCTTA-AAGA----TTTGTAG-ATGTTTTTAAAGAACAAAGACAC--AA
droEle1 scf7180000491194:119295-119482 - TACATCAGTGGCTGGGACCAATTCG---CACCAAAGAGTTAAAGGAGCATATTGTAAGTTTTTCCGGTGTCCG--------GAACACA--------AAA--------------------CCAT--------------------------------C---TGTCGATAACG--AAATGACTCACTGAT-CTGAAATGCCC---------------------ACAAATCGAACAGATAACTATGCACC-------------ACA-CTT-------------AATATTA------------------------------------------------------AAGAAATGTGTTTCG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAGCAGAGTTG-----
droRho1 scf7180000779488:186919-187236 - TACATCAGTGGCTGGGACCAATTCG---CACCAAAGAGCTAAAGGAGCATATTGTAAGTTTCTCC-------G--------GAACCCA--------AAA--------------------ACAT--------------------------------C---TGTCGATAACG--AAATGACTCACTGAT-CAGAAATGCCC------------------------------------------------------------------ACGACACCTCTTAA------------TGCATCATCCT---AC------------A-----TTAAAAGGAATTTTAAAGAAAAGTGTTTCGTAAAGTTAAAATAAGAGTGTTCTTAACTCTTTTTCCAGTATTTATCTTTGAGAACAAAGAAACAAAGTAA-AA-------------------------------------------------------------------------------------------------------------------------GTGATTGTATATTTTCAGTAATAAGTTGCTTGATAAAAAATGTAGAATACTTCAGAAACAGGGGAATTTTT-------------------------------------------------------------------------------AA
droFic1 scf7180000454106:2200486-2200558 + TACATCAGTGGCTGGGACCAATCCG---CACCAAAGAGCTTAAGGAGCATATTGTAAGTTCCGCA----------------GAACCCC--------AAA--------------------A-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droKik1 scf7180000302355:991183-991330 + TACATCAGTGGCTGGGACCAATTCG---GACCAAGGAGCTAAAGGAGCATATTGTAAGTTAGAC--------------------------------------------------------------------------------------------------------------------------T-CTGAAATGGTTCTTTGAAAATTAGTTCGATATGAAAATAGAATAGATACTTGTGGATATAAAACTACCAAAATATTTC-------------AATAATA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------A
droAna3 scaffold_13340:14557423-14557479 + TACATCAGTGGCTGGGACCAATTCG---CACCAAGGAGCTGAAGGAGCATATTGTAAGTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droBip1 scf7180000395971:612718-612981 - TACATCAGTGGCTGGGACCAATACG---CACCAAGGAGCTAAAGGAGCATATTGTAAGTTGAC----------------------GCC--------CTATAAAGCTCTATCAAGTGACTACATACGTCACTCCAAGTATTTTCGGAAATTACTAGCTTGTGT----------TAATGAGTCAGTGAT-CTGAAAGGTCT------------------------------------------------------------------TCGATAAGAA-A--------------------------------------------------------------------------------------------------------------------------------------------TAAAGTCT-AATATGTTGAGCCATAAATTCATGATAAGTCCAAGTATGAGAAAGAATTGTACTTTTC--CCA--------------------------------------------------------------AAAA-----------------------------------------------------------ATTTTTA------------------------------------------------------------AAAAGTATACATC-ATGAC-
dp5 2:24347969-24348024 + TACATCAGTGGCTGGGACCAATCCG---GAGCAAAGAGCTAAAGGAGCATATTGTAAGT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droPer2 scaffold_3:7122525-7122580 + TACATCAGTGGCTGGGACCAATCCG---GAGCAAAGAGCTAAAGGAGCATATTGTAAGT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droWil2 scf2_1100000004943:8310422-8310481 + TACATCAATGGTTGGGACCAATACGAACCACCAAAGAGCTAAAGGAGCATATTGTAAGTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droVir3 scaffold_12855:8682638-8682715 - TACATCAATGGCTGGGACCAATACG------CAAGGAGCTAAAGGAGCATATTGTAAGTGTCTTA----------------AAAAAAA--------GAA--------------------A------------------------------------------------------------------A-CAAAAAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droMoj3 scaffold_6540:23869771-23869879 - TACATCAATGGCTGGGACCAATACG------CAAAGAGCTAAAGGAGCATATTGTAAGTGTTCCT----------------AA--CTG--------AAA--------------------G-------------------------------------------------------TGT----TTGAA-CTGAAATCTTC------------------------------------------------------------------C-------------AATATCAGAGAGATTATGTGT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droGri2 scaffold_14830:2371235-2371295 - TACACCAGTGGCTGGGACCCATACG------CAAAGAGCTAAAGGAGCATATTGTAAGTGTTCCC----------------AA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droEre2
TACATCACTGGCTGGGACCAATCCG---CTCCAAGGAGCTAAAGGAGCATATTGTAAGTTCCTCC----------------AAGCCCG--------GAA--------------------A------------------------------------------------------------------T-CTGAAATTTTT------------------------------------------------------------------TCGTGTCGAT-ATG------------TGTAG-AGGATTGAGC------------GT--------T---AAA--------------------------------------------------------------------------------------TGTAAA-----------------------------------------------GAACTATGTTTCGATGATGAT--------------------TCAGGAAGTTACTTAACAT-TCGGAGAAT--AGGAACTTA-----TCTTCATA-AAAATAGGA---------------------------------------------------------AGTACAA------TGTACTCTATATA----CCATTTA-GAGATTTCAGAGAACAAAGC-AT--GASizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.....CACTGGCTGGGACCAATCC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010100000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGATGATGAT--------------------TCAGGAAGTTACTTAAC........................................................................................................................................................................2711.0010000010
..................................................................................................................................................................................................................................................................................T-ATG------------TGTAG-AGGATTGAGC------------..............................................................................................................................................................................................................................................................................................................................................................................................1911.0010000010
................................................................................................................................................................................................................................................................................................................................T--------T---AAA--------------------------------------------------------------------------------------TGTAAA-----------------------------------------------GAACTATGTAG.......................................................................................................................................................................................................................2211.0010010000
................................AAGGAGCTAAAGGAGCATATT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000010
droYak3
TACATCACTGGCTGGGACCAATCCG---CTCCAAGGAGCTAAAGGAGCATATTGTAAGTTCCTCC----------------AAACCCG--------GAA--------------------ACAT--------------------------------T---TGTCGGTGGCG--CAATGATTCAGTGAT-CTGAAATGTTT------------------------------------------------------------------TCGAGTCGAT-AAG------------TTCTTT-GGATTGAGC------------AT--------T---AAA--------------------------------------------------------------------------------------TTTAAT-----------------------------------------------AATCTTTGTTTCGATGATGAT--------------------TCAAAAACTTATTTAACAT-ACAGATTAT--AGGAACATA---------CATAGAAAATAGGA---------------------------------------------------------AGTACAG------AATACTATATATATGTAC-CATTTAGAGATTGCATAGAACAATGAAAT--GASizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
..............................CCAAGGAGCTAAAGGAGCA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100000010000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATAGGA---------------------------------------------------------AGTACAG------AATACT..............................................2111.00100000010000
................................................................................................................................................................................................................................................................................GAT-AAG------------TTCTTT-GGATTGAGC------------..............................................................................................................................................................................................................................................................................................................................................................................................2111.00100000010000
.....................................................................................................................................................................................................TT------------------------------------------------------------------TCGAGTCGAT-AAG------------TTCC......................................................................................................................................................................................................................................................................................................................................................................................................................1911.00100100000000
...........................................................TCCTCC----------------AAACCCG--------GAA--------------------ACAT--------------------------------T---TGTCGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.00101000000000
droSec2
TACATCACTGGCTGGGACCAATCCG---CTCCAAGGAGCTAAAGGAGCATATTGTAAGTGCCTCA----------------GAAGCCA--------GAAACA-----------------ACAT--------------------------------G---CGTCGCAAGCT--AAATGTTTCACTGAT-CTGAAATGTTT------------------------------------------------------------------TCGAGTCGAT-AAG------------CATTGTAGCATTGAGC------------AT--------T------------------------------------------------------------------------------------------------AG-----------------------------------------------GAACTTTGTTGCGATAATGAT--------------------TTATAAAGTTATTTAAAAT-ACGAAGAAT--AGGAA-------------CATA-AAAATAGGA---------------------------------------------------------AGTACAA------GATACTATATATA----CTCATTT-GAGATTAAAGAGAACAAAGAAAA--GASizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
......................................................................................................................................................................................................T------------------------------------------------------------------TCGAGTCGAT-AAG------------CATTGTAGCATTGA............................................................................................................................................................................................................................................................................................................................................................................................................2811.0010100
droSim2
TACATCACTGGCTGGGACCAATCCG---CTCCAAGGAGCTAAAGGAGCATATTGTAAGTGCCTCA----------------GAAGCCA--------GAA--------------------ACAT--------------------------------T---CGTCGCAAACC--AAATGTTTCACTGAT-CTGAAATGTTT------------------------------------------------------------------TCGAGTCGAT-AAG------------CATTGTAGCATTGAGC------------AT--------A------------------------------------------------------------------------------------------------AG-----------------------------------------------GAACTTTGTTGCGATAATGAT--------------------TTATAAAGTTATTTAAAAT-ACGAAGAAC--GGGAA-------------CATA-AAAATAGGA---------------------------------------------------------AGTACAA------AATACTATATATA----CTCATTT-GAGATTAAAGAGAACAAAGAAAA--GASizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
...........CTGGGACCAATCCG---CTCC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00100100000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TT-GAGATTAAAGAGAACAAAGAAAA--GA2711.00100010000000000000
..................................................................................................................................................................................................................................................................................T-AAG------------CATTGTAGCATTGAGC------------AT--------A------------------------------------------------------------------------------------------------AG-----------------------------------------------GA................................................................................................................................................................................................................................2711.00100000010000000000
.......................................................................................................................................................................................................................................................................................................GTAGCATTGAGC------------AT--------A------------------------------------------------------------------------------------------------AG-----------------------------------------------G.................................................................................................................................................................................................................................1811.00100001000000000000
....................................................................................................................................................................................CACTGAT-CTGAAATGTTT------------------------------------------------------------------TCGA................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00101000000000000000
................................................................................................................................................................................................................................................................................................................................T--------A------------------------------------------------------------------------------------------------AG-----------------------------------------------GAACTTTGTTGCGATAATGAT--------------------T........................................................................................................................................................................................2611.00100000010000000000
dm3
TACATCACTGGCTGGGACCAATCCG---CTCCAAGGAGCTAAAGGAGCATATTGTAAGTGCCTCG----------------GAACCCA--------GAA--------------------ACAT--------------------------------C---CGTCGAAAGCT--AAATGTTTCACTGAT-CTGAAATGTTT------------------------------------------------------------------TCGAGTCGAT-AAG------------CATTGTAGCATTGAGC------------AA--------T------------------------------------------------------------------------------------------------TA-----------------------------------------------GAACTTTGCTCCGATAAAGGT--------------------T----------TTTAAAAT-ACGAAGAATATAGGAGCATA-----GGAACACA-AAAATAGGA---------------------------------------------------------AGTACAA------AATACTATATATA----CTCATTT-GAGATTACAGAGAACAAAGAAAA--GASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
TACATCACTGGCTGGGACCAATCCG---C................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2613.0030000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.............................TCCAAGGAGCTAAAGGAGCATATTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000
.............................TCCAAGGAGCTAAAGGA...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................AAAGGAGCATATTGTAAGTGC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000001000000000000000
.................................................TATTGTAAGTGCCTCG----------------GAACC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...ATCACTGGCTGGGACCAATCCG---CTC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............GGACCAATCCG---CTCCAAGGA........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCATTT-GAGATTACAGA................1711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTACAGAGAACAAAGAAAA--C.2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TATAGGAGCATA-----GGAACACA-A..................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000
.ACATCACTGGCTGGGACCAATCCG---CTCC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................A--------GAA--------------------ACAT--------------------------------C---CGTCGAAAGC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................TGTTT------------------------------------------------------------------TCGAGTCGAT-AAG------------CATTGTAG..................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................AGCTAAAGGAGCATATTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCATTT-GAGATTACAGAGAACAAAGA.......2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGAACACA-AAAATAGGA---------------------------------------------------------AGTACAA------AATAC...............................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................A--------------------ACAT--------------------------------C---CGTCGAAAGCT--AAAT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAT-ACGAAGAATATAGGAGC....................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCATTT-GAGATTACAGAGAACAAAGAAAA--..3011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCATTT-GAGATTACAGAGAACAAAGAA......2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAATATAGGAGCATA-----GGA.........................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAT-ACGAAGAATATAGGAGCATA-----GGAA........................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................T--------------------------------C---CGTCGAAAGCT--AAATGTTTCACTGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
..................................................ATTGTAAGTGCCTCG----------------GAACCCA--------GAA--------------------A.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
............................CTCCAAGGAGCTAAAGGAGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................CCAAGGAGCTAAAGGAGCATA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000
....................................................................................................................................................................................................................................................................................AAG------------CATTGTAGCATTGAGC------------A.............................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGTACAA------AATACTATATA.........................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGGAGCATA-----GGAACACA-AAAATAGGA---------------------------------------------------------.................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000
......................................................................................................................................................................................................T------------------------------------------------------------------TCGAGTCGAT-AAG------------CATTGTAGCATT..............................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................TTGTAAGTGCCTCG----------------GAACCCA--------GAA--------------------AC....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................TTCACTGAT-CTGAAATGTTT------------------------------------------------------------------TCGAGTC.............................................................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................TAAGTGCCTCG----------------GAACCCA--------GAA--------------------ACA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T----------TTTAAAAT-ACGAAGAATATAGGAGC....................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............GGACCAATCCG---CTCCAAGGAGCT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.................................AGGAGCTAAAGGAGCATATTGTAAG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000
..............................CCAAGGAGCTAAAGGAGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................CCAAGGAGCTAAAGGAGCA............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TA----CTCATTT-GAGATTACAGAGAACAAA.........2711.0010000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................T-AAG------------CATTGTAGCATTGAGC------------AA--------T------------------------------------------------------------------------------------------------TA-----------------------------------------------GAAC..............................................................................................................................................................................................................................2911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEug1
TACATCAGTGGCTGGGACCAATTCG---CACCAAAGAGCTTAAGGAGCATATTGTAAGTTTTTTTTTT--AAGTAACTTTAAAAACCATAAAGAAAAAA--------------------CCAG--------------------------------C---TGTTGAGAGTGGAAAATGATTCACTGATTCGGAAATGTTT------------------------------------------------------------------TCTAACTGAA-AAA------------CTTATGTGTTGGGAAGAAGATAGCGAGGGCTGTATGTAAAGGAATTTTG--------------------------------------------------------------------------------------TA-----------------------------------------------GAATTTTACTACGATTTGACT--------------------TCTTGAAGTT--TTATTTC-CTGAAGATA--AGGAGTTTG-----TCTCTGTAGTAAATGGTT---------------------------------------------------------AGTAGAA------ATATCTTT-AATG----CTTAAAG-AATGTTCTTAAGAACAAAGACAG--GASizeHit CountTotal NormTotal
No Reads
droBia1
TACATCAGTGGCTGGGACCAATCCG---CACCAAGGAGCTGAAGGAGCATATTGTAAGTTCCTCC----------------GAGCCCG--------AAA--------------------ACAT--------------------------------C---TGGCGATAAGG--CAGTGATTCACAGAT-CTGAAACGCTT------------------------------------------------------------------TCGAAACGGT-CAG------------ATCGTTTGCTTGGTAG------------AG--------AAGGAAT--------------------------------------------------------------------------------------TCT-AA-----------------------------------------------CAACTTGGTTTCGATAAGGGTAGCCCAAAGAACTGAAAAGTTTGAAATATTCTTTAAAAT-ACGAAGTAA------------------------------------------------------------------------------------------------A---------------------------ATAT-CAGATCGAAAAGAACAAATAAAA--C-SizeHit CountTotal NormTotal
No Reads
droTak1
TACATCAGTGGCTGGGACCAATCCG---CACCAAAGAGCTAAAGGAGCATATTGTAAGTTCAGCC----------------GAACCCA--------CGAAAA-----------------ACAT--------------------------------C---TGTCGATAA-G--AAATGATTCACTGAT-CCGAAATACTT------------------------------------------------------------------TCAAGTCGAT-AAA------------CACATTTGCTTAAAA--AGATAACAATG-TTTTGTGAAAAAGAATTGGAATGA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AATGAATTTTACATTCCAGTTTAC--AA-AATAT-----------------------------------------------------------ATTTTTAAAAATGTATAAATCTAA--TAGAATAGTATATCTTA-AAGA----TTTGTAG-ATGTTTTTAAAGAACAAAGACAC--AASizeHit CountTotal NormTotal
No Reads
droEle1
TACATCAGTGGCTGGGACCAATTCG---CACCAAAGAGTTAAAGGAGCATATTGTAAGTTTTTCCGGTGTCCG--------GAACACA--------AAA--------------------CCAT--------------------------------C---TGTCGATAACG--AAATGACTCACTGAT-CTGAAATGCCC---------------------ACAAATCGAACAGATAACTATGCACC-------------ACA-CTT-------------AATATTA------------------------------------------------------AAGAAATGTGTTTCG-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAGCAGAGTTG-----SizeHit CountTotal NormTotal
No Reads
droRho1
TACATCAGTGGCTGGGACCAATTCG---CACCAAAGAGCTAAAGGAGCATATTGTAAGTTTCTCC-------G--------GAACCCA--------AAA--------------------ACAT--------------------------------C---TGTCGATAACG--AAATGACTCACTGAT-CAGAAATGCCC------------------------------------------------------------------ACGACACCTCTTAA------------TGCATCATCCT---AC------------A-----TTAAAAGGAATTTTAAAGAAAAGTGTTTCGTAAAGTTAAAATAAGAGTGTTCTTAACTCTTTTTCCAGTATTTATCTTTGAGAACAAAGAAACAAAGTAA-AA-------------------------------------------------------------------------------------------------------------------------GTGATTGTATATTTTCAGTAATAAGTTGCTTGATAAAAAATGTAGAATACTTCAGAAACAGGGGAATTTTT-------------------------------------------------------------------------------AASizeHit CountTotal NormTotal
No Reads
droFic1
TACATCAGTGGCTGGGACCAATCCG---CACCAAAGAGCTTAAGGAGCATATTGTAAGTTCCGCA----------------GAACCCC--------AAA--------------------A-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droKik1
TACATCAGTGGCTGGGACCAATTCG---GACCAAGGAGCTAAAGGAGCATATTGTAAGTTAGAC--------------------------------------------------------------------------------------------------------------------------T-CTGAAATGGTTCTTTGAAAATTAGTTCGATATGAAAATAGAATAGATACTTGTGGATATAAAACTACCAAAATATTTC-------------AATAATA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ASizeHit CountTotal NormTotal
No Reads
droAna3
TACATCAGTGGCTGGGACCAATTCG---CACCAAGGAGCTGAAGGAGCATATTGTAAGTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
...................AATTCG---CACCAAGGAGCTGAAGGAGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001010000
droBip1
TACATCAGTGGCTGGGACCAATACG---CACCAAGGAGCTAAAGGAGCATATTGTAAGTTGAC----------------------GCC--------CTATAAAGCTCTATCAAGTGACTACATACGTCACTCCAAGTATTTTCGGAAATTACTAGCTTGTGT----------TAATGAGTCAGTGAT-CTGAAAGGTCT------------------------------------------------------------------TCGATAAGAA-A--------------------------------------------------------------------------------------------------------------------------------------------TAAAGTCT-AATATGTTGAGCCATAAATTCATGATAAGTCCAAGTATGAGAAAGAATTGTACTTTTC--CCA--------------------------------------------------------------AAAA-----------------------------------------------------------ATTTTTA------------------------------------------------------------AAAAGTATACATC-ATGAC-SizeHit CountTotal NormTotal
No Reads
dp5
TACATCAGTGGCTGGGACCAATCCG---GAGCAAAGAGCTAAAGGAGCATATTGTAAGT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
No Reads
droPer2
TACATCAGTGGCTGGGACCAATCCG---GAGCAAAGAGCTAAAGGAGCATATTGTAAGT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droWil2
TACATCAATGGTTGGGACCAATACGAACCACCAAAGAGCTAAAGGAGCATATTGTAAGTT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
..CATCAATGGTTGGGACCA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00110000
..........................ACCACCAAAGAGCTAAAGGAGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.00100010
...ATCAATGGTTGGGACCAATACGAACCACC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2911.00110000
...........TTGGGACCAATACGAACC................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.00110000
droVir3
TACATCAATGGCTGGGACCAATACG------CAAGGAGCTAAAGGAGCATATTGTAAGTGTCTTA----------------AAAAAAA--------GAA--------------------A------------------------------------------------------------------A-CAAAAAT--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
..............GGACCAATACG------CAAGGAG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001000000000000000010000000000000000000000000000000000000000000000
droMoj3
TACATCAATGGCTGGGACCAATACG------CAAAGAGCTAAAGGAGCATATTGTAAGTGTTCCT----------------AA--CTG--------AAA--------------------G-------------------------------------------------------TGT----TTGAA-CTGAAATCTTC------------------------------------------------------------------C-------------AATATCAGAGAGATTATGTGT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
..................CAATACG------CAAAGAGCTAAAGGAGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000001
droGri2
TACACCAGTGGCTGGGACCCATACG------CAAAGAGCTAAAGGAGCATATTGTAAGTGTTCCC----------------AA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/17/2015 at 10:40 PM