ID:

der_644

 Coordinate:

scaffold_4770:15767364-15767514 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-8.6 -8.5 -8.5 -8.0

Flybase annnotation

exon [dere_GLEANR_2207:11]; CDS [Dere\GG17310-cds]; intron [Dere\GG17310-in]; Antisense to intron [Dere\GG17291-in]

Repeatable elements

NameClassFamilyStrand
(CCAA)nSimple_repeatSimple_repeat+
mature
  1. scaffold_4690:570241-570261 +
  2. scaffold_4690:5507803-5507823 +
  3. scaffold_4770:15747863-15747883 +
  4. der_644  scaffold_4770:15767365-15767385 +
  5. scaffold_4784:9294196-9294216 +
  6. scaffold_4929:4393732-4393752 +
  7. scaffold_4929:11192344-11192364 +
  8. scaffold_4929:19820925-19820945 +
star

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
CCCCGCTCAAGACACTATAGGTCCCCGATAAGCAGCCCAAGAACACCCAACCAACCAACCAACCAACCAACCAACCAACCAACCAAACAACCAACCAATCAACCATGCTAGACTGCCCGCCCGCCTGTCTGCTCTCGATGTGCCACGCCTTCAAGTTCAAGTTCAAGTCCAGTCCAAGTCCTCCAATCAGCCAAAGACTAGATCGGTCTAGCCTCAGATCGAGTTGGCCACTTGATTGAAAGTAAATGCAT
**************************************************.........................................................((...((....((..((.((.(((..((.((......((........))......)).))..)))..)).))..........))...))...))************************************************** 		Read size # Mismatch Hit Count Total Norm Total V108
head
 M055
female body
 M057
embryo
 V040
embryo
..............CTATAGGTCCCCGATAAGCAGCCC..................................................................................................................................................................................................................... 24 0 1 1.00 1 1 0 0 0
........................................................................................................................CCGCCTGTATGCTCTCGATGTGCCA.......................................................................................................... 25 1 1 1.00 1 1 0 0 0
.................................................................................................................................................................................................................AGCCTCAGATCGAGTTGGCCACTT.................. 24 0 1 1.00 1 1 0 0 0
...............................................................CAACCAACCAACCAACCAACC....................................................................................................................................................................... 21 0 20 0.05 1 0 0 1 0
..................................................CCAACCAACCAACCAACCAACCA.................................................................................................................................................................................. 23 0 20 0.05 1 0 1 0 0
......................................................CCAACCAACCAACCAACCAACCA.............................................................................................................................................................................. 23 0 20 0.05 1 0 1 0 0
.....................................................ACCAACCAACCAACCAACCAACCAAC............................................................................................................................................................................ 26 0 20 0.05 1 0 1 0 0
...............................................CAACCAACCAACCAACCAACCAAC.................................................................................................................................................................................... 24 0 20 0.05 1 0 1 0 0
...................................................CAACCAACCAACCAACCAACC................................................................................................................................................................................... 21 0 20 0.05 1 0 0 1 0
................................................AACCAACCAACCAACCAACC....................................................................................................................................................................................... 20 0 20 0.05 1 0 0 0 1
....................................................AACCAACCAACCAACCAAC.................................................................................................................................................................................... 19 0 20 0.05 1 0 1 0 0
.......................................................CAACCAACCAACCAACCAACC............................................................................................................................................................................... 21 0 20 0.05 1 0 0 1 0
.........................................................ACCAACCAACCAACCAACCAACCAAC........................................................................................................................................................................ 26 0 20 0.05 1 0 1 0 0
...........................................................CAACCAACCAACCAACCAACC........................................................................................................................................................................... 21 0 20 0.05 1 0 0 1 0

Anti-sense strand reads

GGGGCGAGTTCTGTGATATCCAGGGGCTATTCGTCGGGTTCTTGTGGGTTGGTTGGTTGGTTGGTTGGTTGGTTGGTTGGTTGGTTTGTTGGTTGGTTAGTTGGTACGATCTGACGGGCGGGCGGACAGACGAGAGCTACACGGTGCGGAAGTTCAAGTTCAAGTTCAGGTCAGGTTCAGGAGGTTAGTCGGTTTCTGATCTAGCCAGATCGGAGTCTAGCTCAACCGGTGAACTAACTTTCATTTACGTA
**************************************************.........................................................((...((....((..((.((.(((..((.((......((........))......)).))..)))..)).))..........))...))...))************************************************** 		Read size # Mismatch Hit Count Total Norm Total GSM1528801
follicle cells		 V060
head
 V040
embryo
.............................................................TGGTTGGTTGGTTGGTTGGTTGGTTT.................................................................................................................................................................... 26 0 3 1.00 3 3 0 0
.............................................................TGGTTGGTTGGTGGGTTGGTTGGTTT.................................................................................................................................................................... 26 1 3 0.33 1 1 0 0
.............................................................TGGTTGGTTGGTAGGTTGGTTGGTTT.................................................................................................................................................................... 26 1 4 0.25 1 1 0 0
...................GGAGGGGGTATTCGTCGGGT.................................................................................................................................................................................................................... 20 3 13 0.08 1 0 0 1
........................................................................TTGGGTGGTTGGTGTGATGGT.............................................................................................................................................................. 21 3 15 0.07 1 0 1 0
..................................................................................................................................................................................................................................CGGTGACCAAACTTTCATG...... 19 3 17 0.06 1 0 0 1
..............................................................................................................................................................................................................................CAACCGGTTAACTCACTCTC......... 20 3 18 0.06 1 0 0 1
..................................................................GGTTGGTTGGTTGGTTGGTT..................................................................................................................................................................... 20 0 20 0.05 1 0 1 0
..................................................GGTTGGTTGGTTGGTTGGTT..................................................................................................................................................................................... 20 0 20 0.05 1 0 1 0
......................................................GGTTGGTTGGTTGGTTGGTT................................................................................................................................................................................. 20 0 20 0.05 1 0 1 0
........................................................................TTGGCTGATTGGTGTGTTGGT.............................................................................................................................................................. 21 3 20 0.05 1 0 1 0
..............................................GGTTGGTTGGTTGGTTGGTT......................................................................................................................................................................................... 20 0 20 0.05 1 0 1 0
..........................................................GGTTGGTTGGTTGGTTGGTT............................................................................................................................................................................. 20 0 20 0.05 1 0 1 0
..............................TCGGCGAGTTTTTGTGGGTT......................................................................................................................................................................................................... 20 3 20 0.05 1 0 1 0
..............................................................GGTTGGTTGGTTGGTTGGTT......................................................................................................................................................................... 20 0 20 0.05 1 0 1 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droEre2 scaffold_4770:15767314-15767564 + der_644 CC----------------CCGCTCA--AGACA---CTATAGGTC--C--C-CGATAAGCAGCCCAAGA----ACAC------------------------------------------------------------------------------------------------------CCAAC-----------CAACCAACCA-ACCAACCAAC----CAACCAA------------------------CCAACCAAACAACC-----AACCAATC--AACCA------TGCTAGACTGCCCGCCCGCC----TGTCTGC-TCT--CGATGTGCCA-CGCCTTCAA----GTTCA------------AGTTCAAGTCCAGTCCAAGT------CC-----------------------T-----CCAAT----CAGCC-A---AAGACTAGATCG---------------------------------------------GTCTA----GCCTC-------AGATCGA-GTTGG---CCACTTG----ATTGA-AAGTA--------------AATGCAT---
droYak3 3R:9883537-9883773 - CC---------------CCCCTTCA--AGACA---CTATAGGTC--CC-C-CGATAAGCAGCCCAAGA----ATAC------------------------------------------------------------------------------------------------------CCAAC-----------CAACCAACCA-ACCAACCAAC----CA----------------------------------------ACC-----AACCAATC--AACCA------TGCTAGACTGCCCGCCCGCC----TGTCTGC-TCT--CGATGTGCCA-CGCCTTCAA----GTTCA------------AGTTCAAGTCCAGTCCAAGT------CC-----------------------T-----CCAA--GT-CAGCC-A---AAGACTAGATCG---------------------------------------------GGCTA----GCCTC-------AGATCGA-GTTGG---CCACTTG----ATTGA-AAGT---------------AATGCAC---
droSec2 scaffold_0:16082889-16083112 + CCGACCCGACCCAACCACCCATTCA--AGACA---CTATAGGTC--C--C-CGATAAGCAGCCCAAGA----ATAC------------------------------------------------------------------------------------------------------CCAAC-----------CAA-----------------------------------------------------------------CC-----AACCAATC--AACCA------TGCTAGACTGCCCGCCCGCC----TGTCTGC-TCT--CGATGTGCCA-CGACTTCAA----GTTC------------------AAGTCCAGTCCAAGT------CC-----------------------T-----CCAAT----CAGCC-A---ATGACTAGATCG---------------------------------------------GGCTA----GCCTC-------AGATCCA-GTTGG---CCACTTG----ATTGA-AAGT---------------AATGCAC---
droSim2 3r:15213831-15214054 + CCGACCCGACCCGACCACCCATTCA--AGACA---CTATAGGTC--C--C-CGATAAGCAGCCCAAGA----ATAC------------------------------------------------------------------------------------------------------CCAAC-----------CAACCAA---------------------------------------------------------------------------CCA----A------TGCTAGACTGCCCGCCCGCC----TGTCTGC-TCT--CGATGTGCCA-CGCCTTCAA----GTTCA------------AGTTCAAGTCCAGTCCAAGT------CC-----------------------T-----CCAAT----CAGCC-A---ATGACTAGATCG---------------------------------------------GGCTA----GCCTC-------AGATCGA-GTTGG---CCACTTG----ATTGA-AAGTA--------------ATTGCAC---
dm3 chr3R:5835045-5835263 - CC----------------CCATTCA--AGACA---CTATAGGTC--C--C-CGATAAGCAGACCAAGA----ATAC------------------------------------------------------------------------------------------------------CCAAC-----------CAA-----------------C----CA----------------------------------------ACC-----AACCAATC--AACCA------TGCTAGACTGCCCGCCCGCC----TGTCTGC-TCT--CGATGTGCCA-CGCCTTCAA----GTTCA------------AGTTCAAGTCCAGTCCAAGT------CC-----------------------T-----CCAAT----TAGCC-A---ATGACTAGATCG---------------------------------------------GGCTG----GCCTT-------AGATCGA-GTTGG---CCACTTG----ATTGA-AAGTA--------------AATGCAC---
droEug1 scf7180000409470:159582-159801 - CCC--------------TCCATACA--AAACAAT-ATATAGGTC--C--C-TGATCAGCAGCCCAAGA----ATAC----------CTT--A----------------------------------------------------------------------------------------AAC-----------CAA-----------------A----GA----------------------------------------ACC-----AACCAACC--AACCA------TGCTAGACTGCCCGCCCGCC----TGTCTGC-TCT--CGATGTGCCA-CGCCTTCAA----GTTC------------------AAGTCCAGTCCAAGT------CC-----------------------T-----CCAAC----CAGCC-A---AAGACAAGATCG---------------------------------------------GGCTA----GCCTC-------TGATCGA-GTTAG---CCACTTG----ATTGAAAAGTA--------------AATGCAC---
droBia1 scf7180000302402:3325596-3325797 - CC----------------CCATACA--AAACA---CTATAGGTC--CC-C-CGATCAGCAGCCCAAGAAA--AAACCTAT-----------A-------------------------------------------------------------------------------------------------------A-----------------------------------------------------------------ACC-----AACCAAAC--AACCA------TGCTAGACCGCCCGCCCGCC----TGTCTGC-TCT--CGATGTGCCA-CGCCTTCAA----GTTCA------------AGTTCAAGTCCAGTCCATGT------CC-----------------------T-----GCAAC----CA-----------------------------------------------------------------GGCTA----GCCTT-------CGATCGA-GTTAG---CCACTTG----GTTGAAAAGTA--------------AATGCAC---
droTak1 scf7180000415245:285641-285826 + CG----------------CCATACAGAAAACACTACTATAGGTC--CCCC-TGATCAGCAGCCCAAGAAA--ATAC------------------------------------------------------------------------------------------------------CCAA----------------------------------------------------------------------------------------------A--AACCA------TGCTAGACCGCCCGCCCGCC----TGTCTGC-TCT--CGATGTGCCA-CGCCTACAA----GTTCA------------AGTTCAAGTCCAGTCCAAGT------CC-----------------------T-----CCAA------------------------------------------------------------------------GGCTAGTTAGCC-------------------TAG---CCACTTG----ATTGAAAAGTA--------------AATGCAC---
droEle1 scf7180000490967:900393-900625 + CA----------------CCATAAA--ATACA---CTATAGGTC--C--C-CGATCAACC---------------------------------------------------------------------------------------------------------------------------------------CACCAACCA-ACCAACCAAC----CA----------------------------------------AAC-----AACCAAAC--AACCA------TGCTAGACCGCCCGCCCGCC----TGTCTGC-TCT--CGATGTGCCA-CGCCTTCAA----GTTCAAGTTCAAGTTCAAGTTCAAGTCCAGTCCAAGT------CC-----------------------T-----CCGAA----CAGCC-A---AAGACTAGATCG---------------------------------------------GGCTAG-CAGCCTC-------TGATCGA-GTTAG---CCACTTG----ATTGAAAAGTA--------------AATGCAC---
droRho1 scf7180000777202:25681-25886 + CC----------------CCATACA--ATACA---CTATAGGTC--CC-C-CGATCAGCAGCCCAAGA----ATACCCAA-----------A-------------------------------------------------------------------------------------------------------A--------------------------------------------------------------------------ACCAACC--AACCA------TGCTAGACCGCCCGCCCGCC----TGTCTGC-TCT--CGATGTGCCA-CGCCTTCAA----GTTC------------------AAGTCCAGTCCAAGT------CC-----------------------T-----CCAAC----CAGCC-A---AAGACAAGATCG---------------------------------------------GGCTA----GCCTC-------TGATCGA-GTTAG---CCACTTG----ATTGAAAAGTA--------------AATGCAC---
droFic1 scf7180000454104:995863-996094 + AA----------------CCATACA--GAACA---CTTTAGGTC--C--CAAGAAA--------AAGA----A-ACCCAA-----------A-------------------------------------------------------------------------------------------------------AACCAAC-----CAACCAAC----CAACC----------------------------A--------ACC-----AA--CAAC--AACCA------TGCTAGATTGCCCGCCCGCC----TGTCTGC-TCT--CGATGTGCCACCGCCTTCAA----GTTCA------------AGTTAAA-----GTCCAAGT------CC-----------------------T-----CCAACCAA-CAGCC-A---AAGACAAGATCC---------------------------------------------GGCTA----ACCTCTCTGTCCAGATAGATGTTAG---CCACTTG----ATTGAAAAGTA--------------AATGCAC---
droKik1 scf7180000302706:2073215-2073387 - CC----------------T--TACC--AGACA---CTATAGGTC--CA---------------------------C-----------CCACA------------------------------------------------------------------------------------------------------AAA-----------------C----CG----------------------------------------ACC-----AATGAACC--AACCA------AGCTAGTTCGCCCGCCCGCC----TGTCTGC-TCT--CGATGTGCCACCGCCT-------------------------------AGTCAAGTCCAAGT------CC-----------------------T-----CCAAC----CAGCC-A--------------G---------------------------------------------GGCTA----GCCTC-------TGATCGC-GTTAG---CCAATTG----ATTGAAAAGTA--------------AATGCAC---
droAna3 scaffold_13340:6395858-6396030 - CC----------------CTAT-----AGACA---T-TTAGGTATCCC-C-CGATGAAAT-----AGAAATAATCA----------CCCACA-------------------------------------------------------------------------------------------------------AA-----------------C----CG----------------------------------------AAC-----AA--AATC--AACCA------AGCTAG----CCCGCCCGCC----TGTCTGC-TCT--TGATGTGCCA-AGCC---AA----G-CC------------------AAGTCCAG-CCAAGTCAGATCCC-----------------------T-----CCAA-----AAGCC-ACCAAAG-----ATC------------------------------------------------------------------------C----------------------ATGAAAAGT---------------AATGCAC---
droBip1 scf7180000396708:2448496-2448657 + CC----------------TTAT-----AGACA---T-TTAGGTA--CCCC-CGATGATAA-ACAAATA----ATCA----------CCCA-A-------------------------------------------------------------------------------------------------------AA-----------------CCAA--G----------------------------------------AAC-----AA--AATC--AACCA------AGCTAG----CCCGCCCGCC----TGTCTGC-TCT--TGATGTGCCA-AGCC-------------------------------AAGCCAAGTCAGATC------CC-----------------------T-----CCAAA----C-GCC-A---C---CAAGATC------------------------------------------------------------------------C----------------------ATGAAAAGT---------------AATGCAC---
dp5 2:5128285-5128497 + TC----------------CCAACCA--CTAGA---C----------------------AC-----AGA------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTACACGTATAGGTCCACAAAAA-----TAAACCAC----CAA----A------AACCAACCCGCCTGCCTGCC----CGCCTGCCACT--CGATGTGTGC-C-CCCACAA----CAACA------------AAAA--------------------------------------------------------------AAACC-A---AAG---------AATGCGGGGCACGTGTGTGCCGCCCGGGGTTCTCTACCACCTTTTGTTTA----GCCTC-------CAA---------GCCTCCACAT------ATGAAA-------AAAGT----ATAATGCACTGT
droPer2 scaffold_19:836485-836737 + CT----------------CAGCCC----------------------------------CAGCCCCAGA----AA--------------------------------------------------------------------------------------------------------C---------------CAACCAACCA-CCCAA----CCACCCAACCACTAGACACAGATTACACGTATAGGTCCACAAAAA-----AAAACCAC----CAA----A------AACCAACCCGCCTGCCTGCC----CGCCTGCCACT--CGATGTGTGC-CCCCCACAA----CAACA------------AAAAAA-------------------------------------------------------------AACC-A---AAG---------AATGCGGGGCACGTGTGTGCCGCCCGGGGTTCTCTACCACCTTTTGTTTA----GCCTC-------CAA---------GCCTCCACAT------ATGAAA-------AAAGT----ATAATGCACTGT
droWil2 scf2_1100000004902:5543349-5543588 + dwi_2520 CCAATA------------CTCTGTA--ATACA---CACTAGGTC--TT-A-AAATC-------------------------------------------------------------------------------------------------------TGAATCATTCTACGTAAATCCAAG---CAAC----CAACCAACCACACCAA----CCAACCA----------------------------------------AAC-----AACCAACC------A----ACTGCTAGTCCGCCCGCCCGCC----TATCTGC-TCT--AGATGTGCAA-CGCCTACCGTTTAG-AC------------------AATTAT----------------C------------A---------CA-----GA----GA-AAAAC-----------AGAGAGAG--AGA-GAGAGAGAGTAAC-----------------AC----------------AAT--------------TATTAG---AACATTT-TTCATATC------------CAAATCAAAATGCAT---
droVir3 scaffold_13047:13070238-13070480 - AA----------------AAAAAC-----ACG---C----------------------------------------------------------------------------------TAGGATAT----TATGTGGGCCAAAACCTGGTTCCCAAACCAGGCTCAGTCCGC------ACAACGTGTTCCCAATCAA-----------------------------------------------------------------CCGAAACAAC----CCA----A------CGCTAG----CCCGCCTGCC----TGTCTG--------------CCA-AGCCTACAACTAAG-CC------------------AAGTCT-GTCCTGAT------CTTGTTGAATGGATAAGATGAAAGAAAAAAAGA----GAGAG-AGAG---AG----------AG--AGA-GAGAGAGAGTAAC-----------------AA----------------CTT--------------TGTTAG---CCAATTC----GTTTAA-------------------AAAGCGT---
droMoj3 scaffold_6540:31119891-31120157 - CC----------------CTCC---------------------------C-CCTTGAAAC-----AAATACAACAA---ACAGCTCCCCT-AAACTAATACCTAAACAAAAAACATGCCAGGATATATCTATTGGGGGCCAAAATC-------------AGGTCTACCCTACGT-------------TCCCCATCAA-----------------------------------------------------------------CCGAAAGAAC----CCA----ACGCTACAGCCTG----TCCGCCCGCCTGCCTGTCTG--------------CTA-CGCCTACAACTTAG-TC------------------AAGTCT-GTCCTGAT------CT-----------------------T-----GAGAT----AAAGA-A---AGAAAG------AG--AGA-AAAAGAGAGTTAC-----------------AC----------------CTT--------------TGTTAG---CCAATAG-C--GTTTAA-------------------AAAGCGT---
droGri2 scaffold_15074:4094331-4094592 - AC----------------CCATACA--AAACA---GTTTT-ATC--C--C-TAAACAA---AAAAAAA----AAAC----------CT------------------------------TAGA-T----TCTTTGGCTG--------------------------------------ATCCTAA------------CACCGATCA----GTTCAGC----CCATT----------------------------ATCGAA---ACCGA---AAC----CTA----A------TGCTAATCCTGCCGCCTGCC----AGTCTGC-TCTTATGATGTGCCA-CGCCTACAA----AAATT------------AG---------------ACA------CC-ATTGAGTGGACA---------CT-----GA----GAAAG-AGAA---TGAAAG------A-------GAGAGAGAGTTAC-----------------AC----------------CTT--------------TGTTAG---CCACATGTC--GTTTAAAAATAAATAAACAAAT---CAAGCGT---

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droEre2
CC----------------CCGCTCA--AGACA---CTATAGGTC--C--C-CGATAAGCAGCCCAAGA----ACAC------------------------------------------------------------------------------------------------------CCAAC-----------CAACCAACCA-ACCAACCAAC----CAACCAA------------------------CCAACCAAACAACC-----AACCAATC--AACCA------TGCTAGACTGCCCGCCCGCC----TGTCTGC-TCT--CGATGTGCCA-CGCCTTCAA----GTTCA------------AGTTCAAGTCCAGTCCAAGT------CC-----------------------T-----CCAAT----CAGCC-A---AAGACTAGATCG---------------------------------------------GTCTA----GCCTC-------AGATCGA-GTTGG---CCACTTG----ATTGA-AAGTA--------------AATGCAT---SizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
...................................CTATAGGTC--C--C-CGATAAGCAGCCC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000010
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................A----GCCTC-------AGATCGA-GTTGG---CCACTT........................................2411.0010000010
...............................................................................................................................................................................................................CAACCAAC----CAACCAA------------------------CCAACC........................................................................................................................................................................................................................................................................................................................................21200.0510100000
......................................................................................................................................................................................C-----------CAACCAACCA-ACCAACCAAC----CA...........................................................................................................................................................................................................................................................................................................................................................................23200.0511000000
.....................................................................................................................................................................................................CCAACCA-ACCAACCAAC----CAACCA.......................................................................................................................................................................................................................................................................................................................................................................23200.0511000000
....................................................................................................................................................................................................ACCAACCA-ACCAACCAAC----CAACCAA------------------------C.............................................................................................................................................................................................................................................................................................................................................26200.0511000000
...................................................................................................................................................................................CAAC-----------CAACCAACCA-ACCAACCAAC----.............................................................................................................................................................................................................................................................................................................................................................................24200.0511000000
..................................................................................................................................................................................................CAACCAACCA-ACCAACCAAC----C............................................................................................................................................................................................................................................................................................................................................................................21200.0510100000
....................................................................................................................................................................................AAC-----------CAACCAACCA-ACCAACC....................................................................................................................................................................................................................................................................................................................................................................................20200.0510001000
...................................................................................................................................................................................................AACCAACCA-ACCAACCAAC----.............................................................................................................................................................................................................................................................................................................................................................................19200.0511000000
......................................................................................................................................................................................................CAACCA-ACCAACCAAC----CAACC........................................................................................................................................................................................................................................................................................................................................................................21200.0510100000
........................................................................................................................................................................................................ACCA-ACCAACCAAC----CAACCAA------------------------CCAAC.........................................................................................................................................................................................................................................................................................................................................26200.0511000000
..........................................................................................................................................................................................................CA-ACCAACCAAC----CAACCAA------------------------CC............................................................................................................................................................................................................................................................................................................................................21200.0510100000
droYak3
CC---------------CCCCTTCA--AGACA---CTATAGGTC--CC-C-CGATAAGCAGCCCAAGA----ATAC------------------------------------------------------------------------------------------------------CCAAC-----------CAACCAACCA-ACCAACCAAC----CA----------------------------------------ACC-----AACCAATC--AACCA------TGCTAGACTGCCCGCCCGCC----TGTCTGC-TCT--CGATGTGCCA-CGCCTTCAA----GTTCA------------AGTTCAAGTCCAGTCCAAGT------CC-----------------------T-----CCAA--GT-CAGCC-A---AAGACTAGATCG---------------------------------------------GGCTA----GCCTC-------AGATCGA-GTTGG---CCACTTG----ATTGA-AAGT---------------AATGCAC---SizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
......................................................................................................................................................................................................................................................................................................................................................................................................................................................C-A---AAGACTAGATCG---------------------------------------------GGCTA----GCCT......................................................................2311.00100000010000
droSec2
CCGACCCGACCCAACCACCCATTCA--AGACA---CTATAGGTC--C--C-CGATAAGCAGCCCAAGA----ATAC------------------------------------------------------------------------------------------------------CCAAC-----------CAA-----------------------------------------------------------------CC-----AACCAATC--AACCA------TGCTAGACTGCCCGCCCGCC----TGTCTGC-TCT--CGATGTGCCA-CGACTTCAA----GTTC------------------AAGTCCAGTCCAAGT------CC-----------------------T-----CCAAT----CAGCC-A---ATGACTAGATCG---------------------------------------------GGCTA----GCCTC-------AGATCCA-GTTGG---CCACTTG----ATTGA-AAGT---------------AATGCAC---SizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
...............................................................CAAGA----ATAC------------------------------------------------------------------------------------------------------CCAAC-----------CAA-----------------------------------------------------------------CC-----AAC........................................................................................................................................................................................................................................................................................................................2211.0010001
...............................................................................................................................................................................................................................................................................CCAATC--AACCA------TGCTAGACTGCCC.........................................................................................................................................................................................................................................................................................2411.0011000
..............................................................................................................................................................................................................................................................................................................................................................................................CCAAGT------CC-----------------------T-----CCAAT----CAGCC-A---............................................................................................................................................2011.0011000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTTG----ATTGA-AAGT---------------AATGCA....2011.0011000
......................................TAGGTC--C--C-CGATAAGCAGCC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.0010100
droSim2
CCGACCCGACCCGACCACCCATTCA--AGACA---CTATAGGTC--C--C-CGATAAGCAGCCCAAGA----ATAC------------------------------------------------------------------------------------------------------CCAAC-----------CAACCAA---------------------------------------------------------------------------CCA----A------TGCTAGACTGCCCGCCCGCC----TGTCTGC-TCT--CGATGTGCCA-CGCCTTCAA----GTTCA------------AGTTCAAGTCCAGTCCAAGT------CC-----------------------T-----CCAAT----CAGCC-A---ATGACTAGATCG---------------------------------------------GGCTA----GCCTC-------AGATCGA-GTTGG---CCACTTG----ATTGA-AAGTA--------------ATTGCAC---SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
No Reads
dm3
CC----------------CCATTCA--AGACA---CTATAGGTC--C--C-CGATAAGCAGACCAAGA----ATAC------------------------------------------------------------------------------------------------------CCAAC-----------CAA-----------------C----CA----------------------------------------ACC-----AACCAATC--AACCA------TGCTAGACTGCCCGCCCGCC----TGTCTGC-TCT--CGATGTGCCA-CGCCTTCAA----GTTCA------------AGTTCAAGTCCAGTCCAAGT------CC-----------------------T-----CCAAT----TAGCC-A---ATGACTAGATCG---------------------------------------------GGCTG----GCCTT-------AGATCGA-GTTGG---CCACTTG----ATTGA-AAGTA--------------AATGCAC---SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
......................................................................................................................................................................................C-----------CAA-----------------C----CA----------------------------------------ACC-----AACCAATC--AACCA------TGC...................................................................................................................................................................................................................................................................................................2615.0050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000500000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................ACCAAGA----ATAC------------------------------------------------------------------------------------------------------CCAAC-----------CAA-----------------C----C............................................................................................................................................................................................................................................................................................................................................................................2113.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGA-GTTGG---CCACTTG----ATTGA-A............................2112.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................CTGC-TCT--CGATGTGCCA-CGCCTT................................................................................................................................................................................................................................................2312.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................C----TGTCTGC-TCT--CGATGTG..........................................................................................................................................................................................................................................................1812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................CCAATC--AACCA------TGCTAGAC..............................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................ACC-----AACCAATC--AACCA------TGCTAGA...............................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................GATGTGCCA-CGCCTTCAA----GTTCA------------........................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................TC--C--C-CGATAAGCAGACCAAGA----A...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................ACC-----AACCAATC--AACCA------TGCT..................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................GATAAGCAGACCAAGA----ATAC------------------------------------------------------------------------------------------------------CCA...................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................TGACTAGATCG---------------------------------------------GGCTG----GCCT......................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................C----TGTCTGC-TCT--CGATGTGCCA-CGCCTT................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................C--C--C-CGATAAGCAGACCAAG.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................AGTCCAAGT------CC-----------------------T-----CCAAT----TAGC..................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................CGATGTGCCA-CGCCTTCAA----.........................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................CAGACCAAGA----ATAC------------------------------------------------------------------------------------------------------CCAAC-----------CAA-----------------C----.............................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................C-A---ATGACTAGATCG---------------------------------------------GGCTG----G.........................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGA-GTTGG---CCACTTG----ATTGA-.............................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................CTATAGGTC--C--C-CGATAAGC.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................CGATGTGCCA-CGCCTTCAA----GTTCA------------........................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................ACCA------TGCTAGACTGCCCGCC......................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCC-A---ATGACTAGATCG---------------------------------------------GGCTG----GCCT......................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TG----GCCTT-------AGATCGA-GTTGG---..............................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000
...........................................................................................................................................................................................................................................................................................................GCCCGCCCGCC----TGTCTGC-TCT--C................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................CCAAT----TAGCC-A---ATGACTAGATC.................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................ACC-----AACCAATC--AACCA------TGCTA.................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATCG---------------------------------------------GGCTG----GCCTT-------AGATC.........................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................C--AACCA------TGCTAGACTGCCCGC.......................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................AAC-----------CAA-----------------C----CA----------------------------------------ACC-----AACCAATC--A................................................................................................................................................................................................................................................................................................................2170.4330000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................A-----------------C----CA----------------------------------------ACC-----AACCAATC--AACCA------......................................................................................................................................................................................................................................................................................................2040.2510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................C-----------CAA-----------------C----CA----------------------------------------ACC-----AACCAATC--.................................................................................................................................................................................................................................................................................................................18100.1010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................AC-----------CAA-----------------C----CA----------------------------------------ACC-----AACCAATC--.................................................................................................................................................................................................................................................................................................................19100.1010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEug1
CCC--------------TCCATACA--AAACAAT-ATATAGGTC--C--C-TGATCAGCAGCCCAAGA----ATAC----------CTT--A----------------------------------------------------------------------------------------AAC-----------CAA-----------------A----GA----------------------------------------ACC-----AACCAACC--AACCA------TGCTAGACTGCCCGCCCGCC----TGTCTGC-TCT--CGATGTGCCA-CGCCTTCAA----GTTC------------------AAGTCCAGTCCAAGT------CC-----------------------T-----CCAAC----CAGCC-A---AAGACAAGATCG---------------------------------------------GGCTA----GCCTC-------TGATCGA-GTTAG---CCACTTG----ATTGAAAAGTA--------------AATGCAC---SizeHit CountTotal NormTotal
No Reads
droBia1
CC----------------CCATACA--AAACA---CTATAGGTC--CC-C-CGATCAGCAGCCCAAGAAA--AAACCTAT-----------A-------------------------------------------------------------------------------------------------------A-----------------------------------------------------------------ACC-----AACCAAAC--AACCA------TGCTAGACCGCCCGCCCGCC----TGTCTGC-TCT--CGATGTGCCA-CGCCTTCAA----GTTCA------------AGTTCAAGTCCAGTCCATGT------CC-----------------------T-----GCAAC----CA-----------------------------------------------------------------GGCTA----GCCTT-------CGATCGA-GTTAG---CCACTTG----GTTGAAAAGTA--------------AATGCAC---SizeHit CountTotal NormTotal
No Reads
droTak1
CG----------------CCATACAGAAAACACTACTATAGGTC--CCCC-TGATCAGCAGCCCAAGAAA--ATAC------------------------------------------------------------------------------------------------------CCAA----------------------------------------------------------------------------------------------A--AACCA------TGCTAGACCGCCCGCCCGCC----TGTCTGC-TCT--CGATGTGCCA-CGCCTACAA----GTTCA------------AGTTCAAGTCCAGTCCAAGT------CC-----------------------T-----CCAA------------------------------------------------------------------------GGCTAGTTAGCC-------------------TAG---CCACTTG----ATTGAAAAGTA--------------AATGCAC---SizeHit CountTotal NormTotal
No Reads
droEle1
CA----------------CCATAAA--ATACA---CTATAGGTC--C--C-CGATCAACC---------------------------------------------------------------------------------------------------------------------------------------CACCAACCA-ACCAACCAAC----CA----------------------------------------AAC-----AACCAAAC--AACCA------TGCTAGACCGCCCGCCCGCC----TGTCTGC-TCT--CGATGTGCCA-CGCCTTCAA----GTTCAAGTTCAAGTTCAAGTTCAAGTCCAGTCCAAGT------CC-----------------------T-----CCGAA----CAGCC-A---AAGACTAGATCG---------------------------------------------GGCTAG-CAGCCTC-------TGATCGA-GTTAG---CCACTTG----ATTGAAAAGTA--------------AATGCAC---SizeHit CountTotal NormTotal
No Reads
droRho1
CC----------------CCATACA--ATACA---CTATAGGTC--CC-C-CGATCAGCAGCCCAAGA----ATACCCAA-----------A-------------------------------------------------------------------------------------------------------A--------------------------------------------------------------------------ACCAACC--AACCA------TGCTAGACCGCCCGCCCGCC----TGTCTGC-TCT--CGATGTGCCA-CGCCTTCAA----GTTC------------------AAGTCCAGTCCAAGT------CC-----------------------T-----CCAAC----CAGCC-A---AAGACAAGATCG---------------------------------------------GGCTA----GCCTC-------TGATCGA-GTTAG---CCACTTG----ATTGAAAAGTA--------------AATGCAC---SizeHit CountTotal NormTotal
No Reads
droFic1
AA----------------CCATACA--GAACA---CTTTAGGTC--C--CAAGAAA--------AAGA----A-ACCCAA-----------A-------------------------------------------------------------------------------------------------------AACCAAC-----CAACCAAC----CAACC----------------------------A--------ACC-----AA--CAAC--AACCA------TGCTAGATTGCCCGCCCGCC----TGTCTGC-TCT--CGATGTGCCACCGCCTTCAA----GTTCA------------AGTTAAA-----GTCCAAGT------CC-----------------------T-----CCAACCAA-CAGCC-A---AAGACAAGATCC---------------------------------------------GGCTA----ACCTCTCTGTCCAGATAGATGTTAG---CCACTTG----ATTGAAAAGTA--------------AATGCAC---SizeHit CountTotal NormTotal
No Reads
droKik1
CC----------------T--TACC--AGACA---CTATAGGTC--CA---------------------------C-----------CCACA------------------------------------------------------------------------------------------------------AAA-----------------C----CG----------------------------------------ACC-----AATGAACC--AACCA------AGCTAGTTCGCCCGCCCGCC----TGTCTGC-TCT--CGATGTGCCACCGCCT-------------------------------AGTCAAGTCCAAGT------CC-----------------------T-----CCAAC----CAGCC-A--------------G---------------------------------------------GGCTA----GCCTC-------TGATCGC-GTTAG---CCAATTG----ATTGAAAAGTA--------------AATGCAC---SizeHit CountTotal NormTotal
No Reads
droAna3
CC----------------CTAT-----AGACA---T-TTAGGTATCCC-C-CGATGAAAT-----AGAAATAATCA----------CCCACA-------------------------------------------------------------------------------------------------------AA-----------------C----CG----------------------------------------AAC-----AA--AATC--AACCA------AGCTAG----CCCGCCCGCC----TGTCTGC-TCT--TGATGTGCCA-AGCC---AA----G-CC------------------AAGTCCAG-CCAAGTCAGATCCC-----------------------T-----CCAA-----AAGCC-ACCAAAG-----ATC------------------------------------------------------------------------C----------------------ATGAAAAGT---------------AATGCAC---SizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
......................................................................................................................................................................................................................................................................................................AG----CCCGCCCGCC----TGTCTGC-TCT--.................................................................................................................................................................................................................................................................2211.001100000
......................................TAGGTATCCC-C-CGATGAAAT-----AGAA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001100000
......................................................................................................................................................................................................................................................................................................................................................................................AGTCCAG-CCAAGTCAGATCCC-----------------------T-----C..............................................................................................................................................................2311.001100000
..................................................................................................................................................................................................................................................................................................................CGCC----TGTCTGC-TCT--TGATGT...........................................................................................................................................................................................................................................................2011.001100000
droBip1
CC----------------TTAT-----AGACA---T-TTAGGTA--CCCC-CGATGATAA-ACAAATA----ATCA----------CCCA-A-------------------------------------------------------------------------------------------------------AA-----------------CCAA--G----------------------------------------AAC-----AA--AATC--AACCA------AGCTAG----CCCGCCCGCC----TGTCTGC-TCT--TGATGTGCCA-AGCC-------------------------------AAGCCAAGTCAGATC------CC-----------------------T-----CCAAA----C-GCC-A---C---CAAGATC------------------------------------------------------------------------C----------------------ATGAAAAGT---------------AATGCAC---SizeHit CountTotal NormTotal
No Reads
dp5
TC----------------CCAACCA--CTAGA---C----------------------AC-----AGA------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTACACGTATAGGTCCACAAAAA-----TAAACCAC----CAA----A------AACCAACCCGCCTGCCTGCC----CGCCTGCCACT--CGATGTGTGC-C-CCCACAA----CAACA------------AAAA--------------------------------------------------------------AAACC-A---AAG---------AATGCGGGGCACGTGTGTGCCGCCCGGGGTTCTCTACCACCTTTTGTTTA----GCCTC-------CAA---------GCCTCCACAT------ATGAAA-------AAAGT----ATAATGCACTGTSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
...............................................................................................................................................................................................................................................CACGTATAGGTCCACAAAAA-----TAA.............................................................................................................................................................................................................................................................................................................................2311.0010000001000
droPer2
CT----------------CAGCCC----------------------------------CAGCCCCAGA----AA--------------------------------------------------------------------------------------------------------C---------------CAACCAACCA-CCCAA----CCACCCAACCACTAGACACAGATTACACGTATAGGTCCACAAAAA-----AAAACCAC----CAA----A------AACCAACCCGCCTGCCTGCC----CGCCTGCCACT--CGATGTGTGC-CCCCCACAA----CAACA------------AAAAAA-------------------------------------------------------------AACC-A---AAG---------AATGCGGGGCACGTGTGTGCCGCCCGGGGTTCTCTACCACCTTTTGTTTA----GCCTC-------CAA---------GCCTCCACAT------ATGAAA-------AAAGT----ATAATGCACTGTSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
...........................................................................................................................................................................................................................................................................................................................GCCTGCCACT--CGATGTGTGC-CCCC..................................................................................................................................................................................................................................................2411.001010000
droWil2
CCAATA------------CTCTGTA--ATACA---CACTAGGTC--TT-A-AAATC-------------------------------------------------------------------------------------------------------TGAATCATTCTACGTAAATCCAAG---CAAC----CAACCAACCACACCAA----CCAACCA----------------------------------------AAC-----AACCAACC------A----ACTGCTAGTCCGCCCGCCCGCC----TATCTGC-TCT--AGATGTGCAA-CGCCTACCGTTTAG-AC------------------AATTAT----------------C------------A---------CA-----GA----GA-AAAAC-----------AGAGAGAG--AGA-GAGAGAGAGTAAC-----------------AC----------------AAT--------------TATTAG---AACATTT-TTCATATC------------CAAATCAAAATGCAT---SizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
......................................................................................................................................................................................................................................................................................................................................................TACCGTTTAG-AC------------------AATTAT----------------C------------A---------CA-----GA----GA-AA....................................................................................................................................................2811.00101000
....................................................................................................................................................................................AAG---CAAC----CAACCAACCACA..........................................................................................................................................................................................................................................................................................................................................................................................1911.00100010
.........................................................................................................................................................................................................................................................................................................................................................................................AT----------------C------------A---------CA-----GA----GA-AAAAC-----------AGAGAGAG--AGA-........................................................................................................................2620.50100010
...............................................................................................................................................................................................................................................................................................................................................................................................................................................GA-AAAAC-----------AGAGAGAG--AGA-GA......................................................................................................................20200.10200200
.........................................................................................................................................................................................................................................................................................................................................................................................................................................GA----GA-AAAAC-----------AGAGAGAG--A...........................................................................................................................18110.09100100
...............................................................................................................................................................................................................................................................................................................................................................................................................................................GA-AAAAC-----------AGAGAGAG--AGA-GAGAGAGA................................................................................................................26120.08100010
..........................................................................................................................................................................................................................................................................................................................................................................................................................................A----GA-AAAAC-----------AGAGAGAG--AGA-GAGA....................................................................................................................23170.06100010
...................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAC-----------AGAGAGAG--AGA-GAGA....................................................................................................................19200.05100100
...................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAC-----------AGAGAGAG--AGA-GAGAGA..................................................................................................................21200.05100100
..................................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAC-----------AGAGAGAG--AGA-GAG.....................................................................................................................19200.05100100
droVir3
AA----------------AAAAAC-----ACG---C----------------------------------------------------------------------------------TAGGATAT----TATGTGGGCCAAAACCTGGTTCCCAAACCAGGCTCAGTCCGC------ACAACGTGTTCCCAATCAA-----------------------------------------------------------------CCGAAACAAC----CCA----A------CGCTAG----CCCGCCTGCC----TGTCTG--------------CCA-AGCCTACAACTAAG-CC------------------AAGTCT-GTCCTGAT------CTTGTTGAATGGATAAGATGAAAGAAAAAAAGA----GAGAG-AGAG---AG----------AG--AGA-GAGAGAGAGTAAC-----------------AA----------------CTT--------------TGTTAG---CCAATTC----GTTTAA-------------------AAAGCGT---SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
....................................................................................................................................................................................................A-----------------------------------------------------------------CCGAAACAAC----CCA----A------CGCT..................................................................................................................................................................................................................................................................................................1911.001000000000000000100000000000000000000000000000000000000000000000
......................................................................................................................TAGGATAT----TATGTGGGCC............................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001010000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTAG---CCAATTC----GTTTAA-------------------AA........2111.001000000000000000001000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................TGTTGAATGGATAAGATGAAAGAA....................................................................................................................................................................2411.001000000000000000000010000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAGAGTAAC-----------------AA----------------CTT--------------TGTTAG---CCAATT........................................2811.001000000000000001000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................A----GAGAG-AGAG---AG----------AG--AGA-GAGAGAGA................................................................................................................25200.102000000020000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................AAGA----GAGAG-AGAG---AG----------AG--AGA-........................................................................................................................20200.051000000000000000000000000000000000001000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................AAAAGA----GAGAG-AGAG---AG----------AG--AGA-GAG.....................................................................................................................25200.051000000000000001000000000000000000000000000000000000000000000000
droMoj3
CC----------------CTCC---------------------------C-CCTTGAAAC-----AAATACAACAA---ACAGCTCCCCT-AAACTAATACCTAAACAAAAAACATGCCAGGATATATCTATTGGGGGCCAAAATC-------------AGGTCTACCCTACGT-------------TCCCCATCAA-----------------------------------------------------------------CCGAAAGAAC----CCA----ACGCTACAGCCTG----TCCGCCCGCCTGCCTGTCTG--------------CTA-CGCCTACAACTTAG-TC------------------AAGTCT-GTCCTGAT------CT-----------------------T-----GAGAT----AAAGA-A---AGAAAG------AG--AGA-AAAAGAGAGTTAC-----------------AC----------------CTT--------------TGTTAG---CCAATAG-C--GTTTAA-------------------AAAGCGT---SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
...................................................................................................................TGCCAGGATATATCTATTGGGGGCCA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.001000010
............................................................................................................................................................................................................................................................................................................................................................TTAG-TC------------------AAGTCT-GTCCTGAT------CT-----------------------T-----GAGA...........................................................................................................................................................2711.001100000
droGri2
AC----------------CCATACA--AAACA---GTTTT-ATC--C--C-TAAACAA---AAAAAAA----AAAC----------CT------------------------------TAGA-T----TCTTTGGCTG--------------------------------------ATCCTAA------------CACCGATCA----GTTCAGC----CCATT----------------------------ATCGAA---ACCGA---AAC----CTA----A------TGCTAATCCTGCCGCCTGCC----AGTCTGC-TCTTATGATGTGCCA-CGCCTACAA----AAATT------------AG---------------ACA------CC-ATTGAGTGGACA---------CT-----GA----GAAAG-AGAA---TGAAAG------A-------GAGAGAGAGTTAC-----------------AC----------------CTT--------------TGTTAG---CCACATGTC--GTTTAAAAATAAATAAACAAAT---CAAGCGT---SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTTAC-----------------AC----------------CTT--------------TGTTAG---CCACA.........................................2111.00110
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGAGTTAC-----------------AC----------------CTT--------------TGTTAG---CCAC..........................................2411.00110
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTTAC-----------------AC----------------CTT--------------TGTTAG---CCACA.........................................2311.00110

Generated: 05/17/2015 at 10:41 PM