der_627

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- TGACTTTGACTACGAGCCCTTTTACAAGGAGTTCATCACGCTGTCAAGAGGTAAGTCCTCGAACTACAATTTTTCAGTAATTTCTTAAGGTTTTCAATATGCGAAGTCGTTCCCCTCATTGGCGTTCAATTTTCGCCTGTAAGGTTTTAAGACTCCGCAGAACAATTATAAGCAATCATTCACCCGCGTCCAAGTGAAGCTCAATTGGTTCGTGGTTTTGGATTTGCTTACAAGATTTTTACTTTTAATAA ************************************************************************************************.((((.((((.....(((.((.((((.........)))).)).)))......)))).))))................................**********************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V107 male body	V108 head	M055 female body	M057 embryo	V040 embryo	V060 head	GSM1528801 follicle cells
..................................................................................................ATGCGAAGTCGTTCCCCTCATTGGC................................................................................................................................	25	0	1	329.00	329	192	47	70	13	7	0	0
..................................................................................................ATGCGAAGTCGTTCCCCTCATT...................................................................................................................................	22	0	1	115.00	115	63	16	33	1	1	1	0
..................................................................................................ATGCGAAGTCGTTCCCCTCATTG..................................................................................................................................	23	0	1	39.00	39	23	2	12	0	1	1	0
......................................................................................................................................................................................................................GTTTTGGATTTGCTTACAAGA................	21	0	1	33.00	33	4	28	0	0	0	1	0
..................................................................................................ATGCGAAGTCGTTCCCCTCATTGG.................................................................................................................................	24	0	1	31.00	31	8	1	20	2	0	0	0
....................................................................................................................................................................................................................TGGTTTTGGATTTGCTTACAAGA................	23	0	1	28.00	28	0	27	0	0	0	1	0
........................................................................................................................................................................................................................TTTGGATTTGCTTACAAGA................	19	0	1	18.00	18	6	11	0	0	0	1	0
.....................................................................................................................................................................................................................GGTTTTGGATTTGCTTACAAGA................	22	0	1	17.00	17	0	6	2	0	0	0	9
.......................................................................................................................................................................................................................TTTTGGATTTGCTTACAAGA................	20	0	1	16.00	16	1	13	0	0	0	2	0
..................................................................................................................................................................................................................CGTGGTTTTGGATTTGCTTACAAGA................	25	0	1	15.00	15	0	13	1	0	0	1	0
...................................................................................................................................................................................................................GTGGTTTTGGATTTGCTTACAAGA................	24	0	1	13.00	13	1	12	0	0	0	0	0
.........................................................................................................................................................................................................................TTGGATTTGCTTACAAGA................	18	0	1	11.00	11	0	10	0	0	0	1	0
..................................................................................................ATGCGAAGTCGTTCCCCTC......................................................................................................................................	19	0	1	10.00	10	2	2	5	1	0	0	0
...................................................................................................TGCGAAGTCGTTCCCCTCATTGGC................................................................................................................................	24	0	1	10.00	10	4	1	5	0	0	0	0
................................................................................................................................................................................................................TTCGTGGTTTTGGATTTGCTTACA...................	24	0	1	9.00	9	4	4	0	0	0	1	0
.................................................................................................................................................................................................................TCGTGGTTTTGGATTTGCTTACAAGA................	26	0	1	9.00	9	0	9	0	0	0	0	0
..................................................................................................ATGCGAAGTCGTTCCCCTCATTGGCG...............................................................................................................................	26	0	1	8.00	8	2	0	6	0	0	0	0
................................................................................................................................................................................................................TTCGTGGTTTTGGATTTGCTTAC....................	23	0	1	8.00	8	4	4	0	0	0	0	0
..................................................................................................ATGCGAAGTCGTTCCCCTCATTTGC................................................................................................................................	25	1	1	6.00	6	2	2	1	0	1	0	0
..................................................................................................ATTCGAAGTCGTTCCCCTCATTGGC................................................................................................................................	25	1	1	6.00	6	4	0	2	0	0	0	0
................................................................................................................................................................................................................TTCGTGGTTTTGGATTTGCTT......................	21	0	1	6.00	6	2	4	0	0	0	0	0
..................................................................................................ATGCGAAGTCGTTCCCCTCA.....................................................................................................................................	20	0	1	5.00	5	1	1	2	0	1	0	0
..................................................................................................ATGCGAAGTCGTTCCCCTCATTGTC................................................................................................................................	25	1	1	5.00	5	2	1	0	0	2	0	0
........................................................................................................................................................................TAAGCAATCATTCACCCGCGTCC............................................................	23	0	1	4.00	4	0	4	0	0	0	0	0
........................................................................................................................................................CTCCGCAGAACAATTATAAGC..............................................................................	21	0	1	4.00	4	0	0	3	1	0	0	0
................................................................................................................................................................................................................TTCGTGGTTTTGGATTTGCTTACAAGA................	27	0	1	4.00	4	1	3	0	0	0	0	0
..................................................................................................ATGCGAAGTCGTTCCCCTCATTGGCGT..............................................................................................................................	27	0	1	4.00	4	4	0	0	0	0	0	0
........................................................................................................AGTCGTTCCCCTCATTGGC................................................................................................................................	19	0	1	4.00	4	1	1	1	0	1	0	0
...........................................................................................................................GTTCAATTTTCGCCTGTAAGGTTTTAAGA...................................................................................................	29	0	1	3.00	3	2	0	1	0	0	0	0
................................................................................................................................................................................................................TTCGTGGTTTTGGATTTGCTTA.....................	22	0	1	3.00	3	1	1	1	0	0	0	0
..................................................................................................ATGCGAAGTCGTTCCCCTCAT....................................................................................................................................	21	0	1	3.00	3	1	0	2	0	0	0	0
....................................................................................................GCGAAGTCGTTCCCCTCATTGGC................................................................................................................................	23	0	1	2.00	2	1	0	1	0	0	0	0
........................................................................................................................................................................................................TCAATTGGTTCGTGGTTTTGGATTTGCT.......................	28	0	1	2.00	2	0	0	1	1	0	0	0
..........................................................................................................................................................................................................AATTGGTTCGTGGTTTTGGA.............................	20	0	1	2.00	2	0	0	0	0	2	0	0
...................................................................................................TGCGAAGTCGTTCCCCTCATTG..................................................................................................................................	22	0	1	2.00	2	0	0	2	0	0	0	0
..................................................................................................ATGCGAAGTCGTTCCCCTCAGTGGC................................................................................................................................	25	1	1	2.00	2	0	0	2	0	0	0	0
......................................................................................................................................................................................................................GTTTTGGATTTGCTTACAAG.................	20	0	1	2.00	2	2	0	0	0	0	0	0
........................................................................................................................................................CTCCGCAGAACAATTATAAGCAATC..........................................................................	25	0	1	2.00	2	0	0	2	0	0	0	0
...................................................................................................................................................................................................................GTGGTTTTGGATTTGCTTACAAG.................	23	0	1	2.00	2	1	1	0	0	0	0	0
.........................................................................................................................................................................................................CAATTGGTTCGTGGTTTTGGATTTGC........................	26	0	1	2.00	2	0	0	0	2	0	0	0
..................................................................................................................................................................................................................CGTGGTTTTGGATTTGCTTACAAG.................	24	0	1	2.00	2	0	2	0	0	0	0	0
...........................................................................................................................................................................................................ATTGGTTCGTGGTTTTGGA.............................	19	0	1	2.00	2	1	0	0	0	1	0	0
...........................................................................................................................GTTCAATTTTCGCCTGTAA.............................................................................................................	19	0	1	2.00	2	0	0	2	0	0	0	0
..................................................................................................ATGCGAAGTCGTTCCCCTCATTCGC................................................................................................................................	25	1	1	2.00	2	0	2	0	0	0	0	0
................................................................................................................................................................................................................TTCGTGGTTTTGGATTTGCT.......................	20	0	1	2.00	2	1	1	0	0	0	0	0
...................................................................................................TGCGAAGTCGTTCCCCTCATT...................................................................................................................................	21	0	1	2.00	2	1	0	1	0	0	0	0
.....................................................................................................................................................................ATCCAAGCAATCATTCACCCGCGTCC............................................................	26	3	1	1.00	1	0	0	0	1	0	0	0
........................................................................................................................................................CTCAGCACAACAATTATAAGCAATCATTC......................................................................	29	2	1	1.00	1	0	0	1	0	0	0	0
.............................................................................................................................................................................AATCATTCACCCGCGTCCAAGTGAAG....................................................	26	0	1	1.00	1	0	0	0	1	0	0	0
........................................................................................................................................CTGTAAGGTTTTAAGACTCCGC.............................................................................................	22	0	1	1.00	1	0	0	0	1	0	0	0
........................................................................................................................................................CTCCGCAGAACAATTATAAGCAATCATT.......................................................................	28	0	1	1.00	1	0	0	1	0	0	0	0
...............................................................................................................................................................................................................CTTCGTGGTTTTGGATTTGCTTACAAGA................	28	1	1	1.00	1	0	1	0	0	0	0	0
..........................................................................................................................CGTTCAATTTTCGCCTGTAAGGT..........................................................................................................	23	0	1	1.00	1	1	0	0	0	0	0	0
..................................................................................................ATGCGAAGTCGTTCCCCTCATTGGCGG..............................................................................................................................	27	1	1	1.00	1	0	0	1	0	0	0	0
..................................................................................................ATGCGAAGTCGTTCCCCTCATTAGC................................................................................................................................	25	1	1	1.00	1	0	1	0	0	0	0	0
..................................................................................................ATGCGAAGCCGTTCCCCTC......................................................................................................................................	19	1	1	1.00	1	0	0	0	0	1	0	0
.............................................................................................................................................................................AATCATTCACCCGCGTCCAAGTG.......................................................	23	0	1	1.00	1	1	0	0	0	0	0	0
..................................................................................................ATGCGAAGTCGTTCCCCTCATTTG.................................................................................................................................	24	1	1	1.00	1	0	0	1	0	0	0	0
..........................................................................................................................................................................................................AATTGGTTCGTGGTTTTGGATT...........................	22	0	1	1.00	1	0	0	0	0	1	0	0
..................................................................................................ATGCGAAGTCTTTCCCCTCATTGGC................................................................................................................................	25	1	1	1.00	1	1	0	0	0	0	0	0
..................................................................................................ATGCGAAGTCGTTCCCCTCAC....................................................................................................................................	21	1	1	1.00	1	0	0	0	1	0	0	0
........................................................................................................................................................CTCCGCAGAACAATTATAAGCAATCATTC......................................................................	29	0	1	1.00	1	0	0	0	1	0	0	0
........................................................................................................................................................CACCGCAGAACAATTATAAGCAATCATT.......................................................................	28	1	1	1.00	1	0	0	0	1	0	0	0
..................................................................................................ATGCGAAGTTGTTCCCCTCATTGGC................................................................................................................................	25	1	1	1.00	1	0	0	1	0	0	0	0
.....................................................................................................................................................................................ACCCGCGTCCAAGTGAAGCTCAATTGGTT.........................................	29	0	1	1.00	1	1	0	0	0	0	0	0
..................................................................................................ATGCGAAGTCGTTCGCCTCATTGGCG...............................................................................................................................	26	1	1	1.00	1	0	0	1	0	0	0	0
....................................................................................................................................................................................................AAGTTCAATTGGTTCGTGGTTTTGGATT...........................	28	1	1	1.00	1	0	0	0	1	0	0	0
.................................................................................................................................................................................................................TCGTGTTTTTGGATTTGCTTACAAGA................	26	1	1	1.00	1	0	1	0	0	0	0	0
.....................................................................................................................................................................................................................GGTTTTGGAATTGCTTACAAGA................	22	1	1	1.00	1	0	0	0	0	0	0	1
..................................................................................................ATGCGAAGTCGTTCCCCTCATTGGCGTTC............................................................................................................................	29	0	1	1.00	1	0	0	1	0	0	0	0
...................................................................................................TGCGAAGTCGTGCCCCTCATTGGC................................................................................................................................	24	1	1	1.00	1	0	0	1	0	0	0	0
..................................................................................................ATGCGAAGTCTTTCCCCTCATT...................................................................................................................................	22	1	1	1.00	1	0	0	1	0	0	0	0
......................................................................................................................................................................................................................GTTTTGTATTTGCTTACAAGA................	21	1	1	1.00	1	0	0	0	0	1	0	0
..................................................................................................ATGCGAAGTCGTTCCCCTCATTGAC................................................................................................................................	25	1	1	1.00	1	0	0	0	1	0	0	0
..................................................................................................................................................................................................................CGTGGTTTTGGATTTGCTTACATGA................	25	1	1	1.00	1	0	0	0	0	0	1	0
.......................................................................................................................................................................................................CTCAATTGGTTCGTGGTTTTGGATTTGCT.......................	29	0	1	1.00	1	0	0	0	1	0	0	0
.....................................................................................................................................................................TTATAAGCAATCATTCACCCGCGTCCAAG.........................................................	29	0	1	1.00	1	1	0	0	0	0	0	0
...............................................................................................................................................................................TCATTCACCCGCGTCCAAG.........................................................	19	0	1	1.00	1	0	0	0	1	0	0	0
.................................................................................................................................................TTTAAGACTCCGCAGAACAATTATAAGC..............................................................................	28	0	1	1.00	1	0	0	1	0	0	0	0
........................................................................................................ATCCGTTCCCCTCATTGGC................................................................................................................................	19	2	1	1.00	1	0	0	0	1	0	0	0
................................................................................................................................................................................................................TTCGTGGTTTTGGATTTGCTTAAA...................	24	1	1	1.00	1	0	1	0	0	0	0	0
..........................................................................................................................CGTTCAATTTTAGCCTGTAA.............................................................................................................	20	1	1	1.00	1	0	1	0	0	0	0	0
......................................................................................................................................................................................................................GTTTTGGATTTTCTTACAAGA................	21	1	1	1.00	1	0	1	0	0	0	0	0
..............................................................................................................................................................................ATCATTCACCCGAGTCCAAG.........................................................	20	1	1	1.00	1	0	1	0	0	0	0	0
..................................................................................................ATGCGAAGTCGCTCCCATCATT...................................................................................................................................	22	2	1	1.00	1	0	1	0	0	0	0	0
......................................................................................................GAAGTCGTTCCCCTCATTGGC................................................................................................................................	21	0	1	1.00	1	1	0	0	0	0	0	0
..................................................................................................ATGCGAAGTCGTTCCACTCATT...................................................................................................................................	22	1	1	1.00	1	1	0	0	0	0	0	0
.........................................................................................................................................................................................................................TTGGATTTGATTACAAGA................	18	1	1	1.00	1	0	1	0	0	0	0	0
................................................................................................................................................................................................................TTCGTGGTTTTGGATTTGC........................	19	0	1	1.00	1	0	1	0	0	0	0	0
.....................................................................................................................................................................TTATAAGCAATCATTCACCCGCGTCCA...........................................................	27	0	1	1.00	1	1	0	0	0	0	0	0
..........................................................................................................................................................................................................AATTGGTTCGTGGTTTTGGATTTG.........................	24	0	1	1.00	1	0	1	0	0	0	0	0
........................................................................................................................................................................TAAGCAATCATTGACCCGCGTCCA...........................................................	24	1	1	1.00	1	0	0	0	0	0	1	0
.................................................................................................................................................................................................................TCGTGGTTTTGGATTTGCTTACCAGA................	26	1	1	1.00	1	0	1	0	0	0	0	0
......................................................................................................................................................................TATAAGCAATCATTCACCCGCGTCCAAG.........................................................	28	0	1	1.00	1	1	0	0	0	0	0	0
..................................................................................................ATGCGAAGTCGTTCCCCT.......................................................................................................................................	18	0	1	1.00	1	1	0	0	0	0	0	0
..................................................................................................ATGCGCAGTCGTTCCCCTCATTGGC................................................................................................................................	25	1	1	1.00	1	0	1	0	0	0	0	0
....................................................................................................................................................................................................AAGCTCAATTGGTTCGTGGTTTTGGA.............................	26	0	1	1.00	1	0	0	1	0	0	0	0
........................................................................................................AGTCGTTCCCCTCATTGGCG...............................................................................................................................	20	0	1	1.00	1	0	0	0	0	1	0	0
...........................................................................................................................................................................................................ATTGGTTCGTGGTTTTGGAT............................	20	0	1	1.00	1	1	0	0	0	0	0	0
..........................................................................................................................................................................................................AATTGGTTCGTGGTTTTGGATTTGCT.......................	26	0	1	1.00	1	1	0	0	0	0	0	0
..................................................................................................................................TTTCGCCTGTAAGGTTTTAAGA...................................................................................................	22	0	1	1.00	1	1	0	0	0	0	0	0
.............................................................................................................................................AGGTTTTAAGACTCCGCAGAACA.......................................................................................	23	0	1	1.00	1	0	0	1	0	0	0	0
..................................................................................................ATGCGAAGTCTTTCCCCTCATTGGCGT..............................................................................................................................	27	1	1	1.00	1	0	0	1	0	0	0	0
.................................................................................................................................................................................................................TCGTGGTTTTGGATTTGCTTACGAGA................	26	1	1	1.00	1	0	1	0	0	0	0	0
...................................................................................................................................................................................................................GTGGTTTTGTATTTGCTTACAATA................	24	2	1	1.00	1	0	1	0	0	0	0	0
........................................................................................................ATTCGTTCCCCTCATTGGC................................................................................................................................	19	1	1	1.00	1	0	0	0	1	0	0	0
..........................................................................................................................................................................................................AATTGGTTCGTGGTTTTGGATTTTC........................	25	1	1	1.00	1	0	0	0	1	0	0	0
...................................................................................................TGCGAAGTAGTTCCCCTCATT...................................................................................................................................	21	1	1	1.00	1	0	0	1	0	0	0	0
..................................................................................................AGGTGAAGTCGTTCCCCTCATTGGC................................................................................................................................	25	2	1	1.00	1	0	0	0	1	0	0	0
...........................................................................................................................GTTCAATTTTCGACTGTAAGGTTTTAAGA...................................................................................................	29	1	1	1.00	1	1	0	0	0	0	0	0
..................................................................................................ATGTGAAGTCGTTCCCCTCATC...................................................................................................................................	22	2	1	1.00	1	0	0	0	1	0	0	0
......................................................................................................................................................................................................................GTTTTGGATTTGCTTACCAGA................	21	1	1	1.00	1	0	1	0	0	0	0	0
..................................................................................................................................TTTCGCCTGTAAGGTTTTAAGACTCCGC.............................................................................................	28	0	1	1.00	1	0	1	0	0	0	0	0
..................................................................................................ATGCGAAGTCGTTCCCCTCATTGGCA...............................................................................................................................	26	1	1	1.00	1	0	0	1	0	0	0	0
...........................................................................................................................GTTCAATTTTCGCCTGTAAGGTT.........................................................................................................	23	0	1	1.00	1	0	0	0	1	0	0	0
.................................................................................................TATGCGAAGTCGTTCCCCTCATTGGC................................................................................................................................	26	0	1	1.00	1	1	0	0	0	0	0	0
.........................................................................................................................................................TCCGCAGAACAATTATAAGCAATCA.........................................................................	25	0	1	1.00	1	0	0	1	0	0	0	0
........................................................................................................................................................................................................TGAATTGGTTCGTGGTTTTGGATT...........................	24	1	1	1.00	1	0	0	0	1	0	0	0
..............................................................................................................................................................................................................GGTTCGTGGTTTTGGATTTGC........................	21	0	1	1.00	1	1	0	0	0	0	0	0
.................................................................................................................................................................................................................TCGTGGTTTTGGATTTGCTTACAAG.................	25	0	1	1.00	1	0	1	0	0	0	0	0
..................................................................................................ATGCGAAGTAGTTCCCCTCATTGGC................................................................................................................................	25	1	1	1.00	1	0	1	0	0	0	0	0
..................................................................................................ATGCGAAGTCGCTCCCCTCATT...................................................................................................................................	22	1	1	1.00	1	1	0	0	0	0	0	0
..................................................................................................ATGCGAAGCCGTTCCCCTCATTGGC................................................................................................................................	25	1	1	1.00	1	0	0	1	0	0	0	0
..................................................................................................ATTCGAAGTCGTTCCCCTCATT...................................................................................................................................	22	1	1	1.00	1	1	0	0	0	0	0	0
........................................................................................................................................................................................CGCGTCCAAGTGAAGCTCAATTGGTTC........................................	27	0	1	1.00	1	1	0	0	0	0	0	0
............................................................................................................................................................................................................TTGGTTCGTGGTTTTGGA.............................	18	0	1	1.00	1	0	0	1	0	0	0	0
...................................................................................................................................................................................................................GTGGTTCTGGATTTGCTTACAAGA................	24	1	1	1.00	1	0	1	0	0	0	0	0
................................................................................................................................................TTTTAAGACTCCGCAGAACA.......................................................................................	20	0	1	1.00	1	0	0	1	0	0	0	0
........................................................................................................................................................CTCCGCAGAACAATTATAAGCAATCAT........................................................................	27	0	1	1.00	1	0	0	1	0	0	0	0
...............................................................................................AGGATGCGAAGTCGTTCCCCTCATTGGC................................................................................................................................	28	2	1	1.00	1	0	0	1	0	0	0	0
.................................................................................................................................................................................................................TCATGGTTTTGGATTTGCTTACAAGA................	26	1	1	1.00	1	0	1	0	0	0	0	0
..................................................................................................................................................................................................................CTTGGTTTTGGATTTGCTTACAAGA................	25	1	1	1.00	1	0	1	0	0	0	0	0
........................................................................................................................................................CTCCGCAGAACAATTATAAGCAATCA.........................................................................	26	0	1	1.00	1	0	0	1	0	0	0	0
.......................................................................................................................................................ACTCCGCAGAACAATTATAAGC..............................................................................	22	0	1	1.00	1	0	0	0	1	0	0	0
.....................................................................................................................................................................................................AGCTCAATTGGTTCGTGGTTTTGGATC...........................	27	1	1	1.00	1	0	0	0	1	0	0	0
..................................................................................................ATGCGACGTCGTTCCCCTCATTGGC................................................................................................................................	25	1	1	1.00	1	0	0	1	0	0	0	0
..................................................................................................ATGCGAAGTCGTTCACCTCATC...................................................................................................................................	22	2	1	1.00	1	0	0	0	1	0	0	0
..........................................................................................................................................................................................................AATTGGTTCGTGGTTTTGGATTTGC........................	25	0	1	1.00	1	1	0	0	0	0	0	0
........................................................................................................................................................CGCCGCAGAACAATTATAAGC..............................................................................	21	1	1	1.00	1	0	0	0	1	0	0	0
.................................................................................................................................................................................................GTGAAGCTCAATTGGTTCGTG.....................................	21	0	1	1.00	1	0	1	0	0	0	0	0
................................................................................................................................................................................................................GTCGTGGTTTTGGATTTGCT.......................	20	1	1	1.00	1	0	1	0	0	0	0	0
..................................................................................................ATTCGAAGTCGTTCCCCTCATTG..................................................................................................................................	23	1	1	1.00	1	1	0	0	0	0	0	0
................................................................................................................................ATTTTCGCCTGTAAGGTTTTAAG....................................................................................................	23	0	1	1.00	1	1	0	0	0	0	0	0
..................................................................................................ATCCGAAGTCGTTCCCCTCATTGGC................................................................................................................................	25	1	1	1.00	1	0	1	0	0	0	0	0
........................................................................................................................................................CTCCGCAGAACAATTATAAGCA.............................................................................	22	0	1	1.00	1	0	0	0	0	0	1	0
......................................................................................................................................................................................CCCGCGTCCAAGTGAAGCTCAATTG............................................	25	0	1	1.00	1	0	0	1	0	0	0	0
..................................................................................................ATGCGAAGTCGTTCTCCTCATTGGC................................................................................................................................	25	1	1	1.00	1	0	0	1	0	0	0	0
....................................................................................................................................................................................................................TGGTTTTGGATTTGCTTACAA..................	21	0	1	1.00	1	0	1	0	0	0	0	0
...................................................................................................TGCGAAGTCGTTCCCCTCATTGG.................................................................................................................................	23	0	1	1.00	1	0	0	1	0	0	0	0
..................................................................................................ATGCGAAGTCGTTTCCCTCATTGGCG...............................................................................................................................	26	1	1	1.00	1	0	0	1	0	0	0	0
.........................................................................................................................................................................................................CAATTGGTTCGTGGTTTTGGA.............................	21	0	1	1.00	1	1	0	0	0	0	0	0
........................................................................................................................................................CTCCGCCGAACAATTATAAGC..............................................................................	21	1	1	1.00	1	0	0	1	0	0	0	0
..............................................................................................................................................................................ATCATTCACCCGCGTCCAAGTG.......................................................	22	0	1	1.00	1	0	0	0	1	0	0	0
...............................................................................................................................................................GAACAATTATAATCAATCA.........................................................................	19	1	1	1.00	1	0	0	0	0	1	0	0
........................................................................................................GGTCGTTCCCCTCATGGGC................................................................................................................................	19	2	11	0.82	9	0	0	3	6	0	0	0
.................................................................................................................................................................................................GTGTAGCTCAGTTGGTTAG.......................................	19	3	20	0.80	16	9	5	2	0	0	0	0
..........................................................................................................TCGTTCCCCTCATTGGCAACCA...........................................................................................................................	22	3	2	0.50	1	0	0	1	0	0	0	0
.........................................................................................................................................................................................................................TTTGATTTGCTTACAAGA................	18	1	2	0.50	1	0	1	0	0	0	0	0
..................................................................................................AGGCGAAGTCGTTCCCCTC......................................................................................................................................	19	1	2	0.50	1	0	0	1	0	0	0	0
........................................................................................................................................................................................................................TTTGGATTTGCTTACAAGAAA..............	21	2	4	0.25	1	1	0	0	0	0	0	0
........................................................................................................GGTTGTTCCCCTCATGGGC................................................................................................................................	19	3	20	0.20	4	0	0	0	4	0	0	0
.............................................................AACTACAATTTTTAAGTATT..........................................................................................................................................................................	20	2	7	0.14	1	0	0	0	0	1	0	0
........................................................................................................GTTCGTTCCCCTCATTGGC................................................................................................................................	19	2	12	0.08	1	0	0	1	0	0	0	0
............................................................................................................GTTCCCCTCACTGGGGTC.............................................................................................................................	18	3	20	0.05	1	0	0	1	0	0	0	0
............................................................GAACTATAATGTTCCAGTA............................................................................................................................................................................	19	3	20	0.05	1	0	0	0	0	1	0	0

Species	Coordinate	ID	Alignment
droEre2	scaffold_4770:14386221-14386471 -	der_627	TGACTTTGACTACGAGCCCTTTTACAAGGAGTTCATCACGCTGTCAAGAGGTAAGTCCTCGAACTACAATTTTTCAGTA--------------------------------------------ATTTCTTAAGGTTTTCAATATGCGAAGTC-GTTCCCCTCATTGGCGTTCAATTTTCGCCTGT-AAGGTTTTAAGACTCCGCAGAACAATTAT---AAGCA-ATCATTCACCCGCGTCCAAGTGAAGCTCAATTGGTTCGTGGTTTTGGATTTGCTTACAAGA--------TTTT--TACTTTTAAT---AA
droYak3	3R:11269318-11269569 +		TGACTTTGACTATGAGCCGTTCTACAAGGAGTTCATCACGCTGTCAAGAGGTACGTCCTCAAACTTTAATTTTTGAGTA--------------------------------------------ATTTCTTAGGTTTTTTAATGTGCGAAATCTGTTCCCCTCGTTGGCGTTCAATTTTCGCCTGT-AAGGTTTTAAGATTTCGCAGATCAAATAT---AAGCA-ATCATTCACCCGCGTCCAAGTGAAGCACAATTGGTTCGTGGTTTTGGATTGGCTTACAAAA--------TTCC--TACTTTCAGT---AA
droSec2	scaffold_0:14727222-14727468 -		TGACTTTGACTACGAGCCGTTTTACAAGGAGTTCATCACGTTGTCAAGAGGTAAGTCTTTC------T-----------GTCTAT------T---------------------------ATTCATTTCTTAGGGTTTTCAATGTGCGAAGTCTGTTCCCCTGTTTGGCGTTCAATTTTCGCCTAAAAAGGTTTTAAGACTTCGCAGATGAAATAT---GAGCA-ATCATTCACCCGCATCCAAGTGAAGCTCAATTGGTTCGTGGTTTTGGATTGGCTTACAAGA--------ATAA--TAAAATAAAT---AT
droSim2	3r:13865016-13865261 -		TGATTTTGACTACGAGCCGTTTTACAAGGAGTTCATCACGTTGTCAAGAGGTAAGTCTTTC------T-----------GTCTGT------T---------------------------ATTCATTTCGTAGGGTTTTCAATGTGCGAAGTCTGTTCCCCTGTTTGGCGTTCAATTTTCGCCTGA-AAGGTTTTAAGACTTCGCAGATCAAATAT---GAGCA-ATCATTCACCCGCATCCAAGTGAAGCTCAATTGGTTCGTGGTTTTGGATTGGCTTACAAGA--------ATAA--TAAAATAAAT---GT
dm3	chr3R:7236483-7236729 +		TGACTTTGACTACGAGCCGTTTTACAAGGAGTTCATCACGTTGTCAAGAGGTAAGTCCTTTAAGTC----------------TGC------T---------------------------ATTCATTTCTTATGGGTTTTAATGTGCGAAGTCTGTTCCCCTGTTTGGCGTTCAATTTTCGCCTGA-AAGGTTTTAAGACTTCGTAGATCAAATAT---AAGCA-ATCATTCACCCGCATCCAAGTGAAGCTCAATTGGTTCGTGGTTTTGGATTGGCTTACAAGA--------ATAA--TAAAATAAAT---AT
droEug1	scf7180000409797:860738-860945 +		TGACTTTGACTACGAGCCTTTCTACAAGGAGTTCATCACGCTTTCAAGAGGTAATTGTTTAAAT-----------------------------------------------------------------------GTCACATATGCGAAGTCTGTTCCCCTCATTGGCATTAAATTTTTGTCTAG-GAGGTTTTAAGACTTTGCAGATTAAACAT---AAGCA-ATCATTCACCCGCGACCAAGTGAAGTCTATTTGGTTCGTGGTTTTGGATTGGCTTACAAG------------------------------
droBia1	scf7180000302075:3526877-3527111 -		TGACTTTGATTACGAGCCTTTTTACAAAGAATTCATCACTCTTTCAAGAGGTAAGTCAAAGCAATGGCATGTAAGATCA--------------------------------------------ACTTCTTTAAGTTTTACACATGCGAAGTCTGTTCCCCTTCTTGGCGTTGAGTTTTCGCTTGG-GCGGTTTTAAGACTTCGCAGATCAAACAA---GAGCA-ATCATTCACCCGCGTCCAAGTGAAGCCCAATGGGTTCGTGGTTTTGGATTGGCTTACAAG------------------------------
droTak1	scf7180000415763:204703-204878 -		TAATTA-G-----------------------------------------------------------------------------------------------------------------------TTGAAGATTACATATATGCGAAGTCTGTTCCCCTTGCTGGCGTTGAATTTTCGCCTGG-GAGGTTTAAAGACTTCGCAGATGAAATAT---GAGCA-ATCATTCACCCGCGTCCAAGTGAAGCTCAATTGGTGCGTGGTTTTGGATTGGCTTACAATA--------CTAA--AAATGTCTTT---AA
droEle1	scf7180000491080:2467158-2467395 -		TGACTTCGACTACGAGCCGTTCTACAAGGAGTTCATTACGCTCTCAAGGGGTAAGAAA-------------------------------AT----------GTTTGGTTATTTTAATGAAGTCATTTCTTCAAGATGTTCATATGCGAAGTCTGTTCCCCTCGTTGGCGTTTAAATTTGGCCTTT-GAGGTTTTAAGACTTCGCAGATCAATCAT---GTGCA-ATCATTCACCCGCGTCCAAGTGAAGCCCAATTGGCTCGTGGTTTTGGATTGGCTTACAAG------------------------------
droRho1	scf7180000779097:84496-84748 -		TGACTTCGACTACGAGCCGTTCTATAAGGAGTTCATCACACTCTCAAGAGGTAAGATATGAAGAATTATTATTAGTG----------------------------------------------GAAACTTTAAGTTATACATATGCGGAGTCTGTTCCCCTCGTAGGCGTTTAAGTTTCGCCTTG-GAGGTTTTAAGACTTCGCAGATCAATCAT---GAGCA-ATCATTCACCCGCGTCCAAGTGAAGTCCAATTGGTTCGTGGTTTTGGATTGGCTTACAAGC--------C--ATAAAATCTATTTAAGGA
droFic1	scf7180000453488:617441-617670 -		TGATTTTGACTACGAGCCGTTCTACAAGGAATTTATCACTTTATCAAGGGGTAAGCTTATAAAT------------GTA--------------------------------------------TTTTTTTCGGATTTTATTTTTGCGAAGTCTGTTCCCCTGGTTGGCGTTTTATTTTCGTCGGT-AAGGTTTTAAGACTTCGCAGATTAACCTT---GAGCA-ATCATTCACCCGCGTCCAAGTGAAGCCCAATTGGTTTGTGGTTTTGGATTGGCTTACAAA--------------------TCTTT---AT
droKik1	scf7180000302475:376725-376973 -		TGACTTTGACTATGAGCCGTTCTACAAGGAGTTTATAACTCTATCAAGAGGTAAGATG--AGAC-ATAAA----------------AAAAG----------TTAATTA--------------------------CTTCCCAAGTTCGAAGTCTGTTCCCCTCGTTGGTGTTCAAGTCTCGCCGGA-GAGGTTTTAAGACTTCGCAGATCAAACAT---GAGCA-ATCATTCACCCGCGTCCAAGTGAAGTCCAATTAGCTTGTGGTTTTGGATTGGCTTACATGCAACTTATGTCTT--TATTTACATT---AA
droAna3	scaffold_13340:10595271-10595478 -		CGACTTCGATTACGAACCGTTTTATAAGGAGTTTATTACACTCTCAAGGGGTACGTTAGACA-------------------------------------------------------------------CCAAATCCCCTCCATGTGATGTCTGTTCCCCTCGCTTACTTTAAA-CTTGGTTTGG-GAGGTTTAAAGACATCGCAGATCAAGCA----GAGCC-ATCATTCACCCGCATCCAAGTGAAGACATATTGGATCATGGTTTTAGATGGGCTTACA--------------------------------
droBip1	scf7180000396374:479506-479732 +		TGACTTCGACTACGAACCGTTTTATAAGGAGTTCATTACGCTCTCAAGGGGTAAGTTAGAAA-TCATAG------------------------------------------------------------------TACCTCCATGTTATGTCTGTTCCCCTCGCTTGCTTCGAA-GTTAGTTTGG-GAGGTTTAAAGACATCGCAGATCAAGCA----GAGCC-ATCATTCACCCGTATCCAAGTGAAGACTTATTGGATCATGGTTTTAGATGGGCTTACAATA--------ATAT--AATTCTCATA---AT
dp5	2:29182099-29182321 +		CGACTTTGACTACGGTCCTTTTTACAAGGAATTTATAACCCTGTCGCGAGGTGAGTGACGAAACTATAGT----------------AGAAC----------GTATGTATA----------------------------TTTTATGCGAAGTCTGTTCCCCTCCGTGGCGTCCAGAGATCGCCTTG-GAGGTTTAAGTACTTCGCAGAGCAACTGT---AGCAA-ATCATTCACCTGCGTCCAAGTGAAGTTAAATTTGGATGTGGTTTTGGGTCTGCTCACA--------------------------------
droPer2	scaffold_6:4506080-4506302 +		CGACTTTGACTACTGTCCTTTTTACAAGGAATTTATAACCCTGTCGCGAGGTGAGTGACGAAACTATAGT----------------AGAAC----------GTATGTATA----------------------------TTTTATGCGAAGTCTGTTCCCCTCCGTGGCGTCCAGAGATCGCCTTG-GAGGTTTAAGTACTTCGCAGAGCAACTGT---AGCAA-ATCATTCACCTGCGTCAAAGTGAAGTTAAATTTGGATGTGGTTTTGGGTCTGCTCACA--------------------------------
droWil2	scf2_1100000004902:4246442-4246650 +		TGAATTTGACTATGAACCGTTCTACAAGGAGTTTATAACCTTGTCGCGAGGTAAGCATTGGAAG-----------------------------------------------------------------------GGCTGCTGTGCGAAACCTGTTCCCCTTGCTGGCGTGCAGTGATAGCCTTC-AAGGTTTTAAGGTTTCGCAAATCAAATGTACAGAGCA-AAAATTCACCCGCCTCCAAGTGAAGCACTATTGGTCAGCGGTTTTGATTTTGCTTACA--------------------------------
droVir3	scaffold_12855:6043390-6043611 +		TGACTTCAACTATGACCCCTTCTACAAGGAGTTCATAACGCTGTCGAGAGGTAAGCAGCCCAAGCCTGGC----------------CACA------------------------------------------------GGATGTGCGACATCTGTTCCCCTTGCTGGCGTGCAGTTGTAGCCAAA-AAGGTTTTAAGATCTCGCAGAGCAAACT----AAGCAAATGTTTCACTCGCAACCAATCGCAGTTGTATTGGGCTGCGCTTTTGTATTTGCTGACACTA--------TTCA--TA-------------
droMoj3	scaffold_6540:6362578-6362805 +	dmo_1843	TGACTTTGACTACGAGCCCTTCTACAAGGAGTTCATAACGCTGTCGCGAGGTAAGTCGTAAGCACATAAG-----ACT--------------------------------------------------------CGCTCCACATGCGACATTTGTTCCCCTTGCTGGCGTGCAGCTGTAGCCAGA-AAGGTTTCAAGATGTCGCAGAGCAAACA----GAGCAACTGTTTCACCCGCATCCAACTGAAGTACTATTGGGTTGCGCTTTTGAATTTGCTCACAAAA--------CTAC--TATT----------T
droGri2	scaffold_14906:8017253-8017488 -		TGACTTTGACTACGAGCCCTTCTACAAGGAGTTCATAACTCTGTCCAGAGGTAGGAGATCACTTTC-A-----------GATTGGGTGTAGCATTTATATTATATAT-----------------------------ATATTTTTGTGGAATCTGTTCCCCTGGTTGGCGTTGAGTTGTAGCCAAA-AAGGTTTTAAGATTTCGCACAGTAAAC-T---GGGCA-AATGTTCACTCGCATCCAACTCGAGTTGTTGTCGAATGTGCTTTTGGATTTGCCCACAA-------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droEre2

TGACTTTGACTACGAGCCCTTTTACAAGGAGTTCATCACGCTGTCAAGAGGTAAGTCCTCGAACTACAATTTTTCAGTA--------------------------------------------ATTTCTTAAGGTTTTCAATATGCGAAGTC-GTTCCCCTCATTGGCGTTCAATTTTCGCCTGT-AAGGTTTTAAGACTCCGCAGAACAATTAT---AAGCA-ATCATTCACCCGCGTCCAAGTGAAGCTCAATTGGTTCGTGGTTTTGGATTTGCTTACAAGA--------TTTT--TACTTTTAAT---AA	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
..............................................................................................................................................ATGCGAAGTC-GTTCCCCTCATTGGC..................................................................................................................................................	25	1	329.00	329	70	13	0	7	192	47	0
..............................................................................................................................................ATGCGAAGTC-GTTCCCCTCATT.....................................................................................................................................................	22	1	115.00	115	33	1	1	1	63	16	0
..............................................................................................................................................ATGCGAAGTC-GTTCCCCTCATTG....................................................................................................................................................	23	1	39.00	39	12	0	1	1	23	2	0
........................................................................................................................................................................................................................................................................GTTTTGGATTTGCTTACAAGA--------.....................	21	1	33.00	33	0	0	1	0	4	28	0
..............................................................................................................................................ATGCGAAGTC-GTTCCCCTCATTGG...................................................................................................................................................	24	1	31.00	31	20	2	0	0	8	1	0
......................................................................................................................................................................................................................................................................TGGTTTTGGATTTGCTTACAAGA--------.....................	23	1	28.00	28	0	0	1	0	0	27	0
..........................................................................................................................................................................................................................................................................TTTGGATTTGCTTACAAGA--------.....................	19	1	18.00	18	0	0	1	0	6	11	0
.......................................................................................................................................................................................................................................................................GGTTTTGGATTTGCTTACAAGA--------.....................	22	1	17.00	17	2	0	0	0	0	6	9
.........................................................................................................................................................................................................................................................................TTTTGGATTTGCTTACAAGA--------.....................	20	1	16.00	16	0	0	2	0	1	13	0
....................................................................................................................................................................................................................................................................CGTGGTTTTGGATTTGCTTACAAGA--------.....................	25	1	15.00	15	1	0	1	0	0	13	0
.....................................................................................................................................................................................................................................................................GTGGTTTTGGATTTGCTTACAAGA--------.....................	24	1	13.00	13	0	0	0	0	1	12	0
...........................................................................................................................................................................................................................................................................TTGGATTTGCTTACAAGA--------.....................	18	1	11.00	11	0	0	1	0	0	10	0
..............................................................................................................................................ATGCGAAGTC-GTTCCCCTC........................................................................................................................................................	19	1	10.00	10	5	1	0	0	2	2	0
...............................................................................................................................................TGCGAAGTC-GTTCCCCTCATTGGC..................................................................................................................................................	24	1	10.00	10	5	0	0	0	4	1	0
..................................................................................................................................................................................................................................................................TTCGTGGTTTTGGATTTGCTTACA................................	24	1	9.00	9	0	0	1	0	4	4	0
...................................................................................................................................................................................................................................................................TCGTGGTTTTGGATTTGCTTACAAGA--------.....................	26	1	9.00	9	0	0	0	0	0	9	0
..............................................................................................................................................ATGCGAAGTC-GTTCCCCTCATTGGCG.................................................................................................................................................	26	1	8.00	8	6	0	0	0	2	0	0
..................................................................................................................................................................................................................................................................TTCGTGGTTTTGGATTTGCTTAC.................................	23	1	8.00	8	0	0	0	0	4	4	0
..................................................................................................................................................................................................................................................................TTCGTGGTTTTGGATTTGCTT...................................	21	1	6.00	6	0	0	0	0	2	4	0
..............................................................................................................................................ATGCGAAGTC-GTTCCCCTCA.......................................................................................................................................................	20	1	5.00	5	2	0	0	1	1	1	0
......................................................................................................................................................................................................................T---AAGCA-ATCATTCACCCGCGTCC.........................................................................	23	1	4.00	4	0	0	0	0	0	4	0
......................................................................................................................................................................................................CTCCGCAGAACAATTAT---AAGC............................................................................................	21	1	4.00	4	3	1	0	0	0	0	0
..................................................................................................................................................................................................................................................................TTCGTGGTTTTGGATTTGCTTACAAGA--------.....................	27	1	4.00	4	0	0	0	0	1	3	0
..............................................................................................................................................ATGCGAAGTC-GTTCCCCTCATTGGCGT................................................................................................................................................	27	1	4.00	4	0	0	0	0	4	0	0
....................................................................................................................................................AGTC-GTTCCCCTCATTGGC..................................................................................................................................................	19	1	4.00	4	1	0	0	1	1	1	0
........................................................................................................................................................................GTTCAATTTTCGCCTGT-AAGGTTTTAAGA....................................................................................................................	29	1	3.00	3	1	0	0	0	2	0	0
..................................................................................................................................................................................................................................................................TTCGTGGTTTTGGATTTGCTTA..................................	22	1	3.00	3	1	0	0	0	1	1	0
..............................................................................................................................................ATGCGAAGTC-GTTCCCCTCAT......................................................................................................................................................	21	1	3.00	3	2	0	0	0	1	0	0
................................................................................................................................................GCGAAGTC-GTTCCCCTCATTGGC..................................................................................................................................................	23	1	2.00	2	1	0	0	0	1	0	0
..........................................................................................................................................................................................................................................................TCAATTGGTTCGTGGTTTTGGATTTGCT....................................	28	1	2.00	2	1	1	0	0	0	0	0
............................................................................................................................................................................................................................................................AATTGGTTCGTGGTTTTGGA..........................................	20	1	2.00	2	0	0	0	2	0	0	0
...............................................................................................................................................TGCGAAGTC-GTTCCCCTCATTG....................................................................................................................................................	22	1	2.00	2	2	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................GTTTTGGATTTGCTTACAAG..............................	20	1	2.00	2	0	0	0	0	2	0	0
......................................................................................................................................................................................................CTCCGCAGAACAATTAT---AAGCA-ATC.......................................................................................	25	1	2.00	2	2	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................GTGGTTTTGGATTTGCTTACAAG..............................	23	1	2.00	2	0	0	0	0	1	1	0
...........................................................................................................................................................................................................................................................CAATTGGTTCGTGGTTTTGGATTTGC.....................................	26	1	2.00	2	0	2	0	0	0	0	0
....................................................................................................................................................................................................................................................................CGTGGTTTTGGATTTGCTTACAAG..............................	24	1	2.00	2	0	0	0	0	0	2	0
.............................................................................................................................................................................................................................................................ATTGGTTCGTGGTTTTGGA..........................................	19	1	2.00	2	0	0	0	1	1	0	0
........................................................................................................................................................................GTTCAATTTTCGCCTGT-AA..............................................................................................................................	19	1	2.00	2	2	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................TTCGTGGTTTTGGATTTGCT....................................	20	1	2.00	2	0	0	0	0	1	1	0
...............................................................................................................................................TGCGAAGTC-GTTCCCCTCATT.....................................................................................................................................................	21	1	2.00	2	1	0	0	0	1	0	0
..............................................................................................................................................................................................................................A-ATCATTCACCCGCGTCCAAGTGAAG.................................................................	26	1	1.00	1	0	1	0	0	0	0	0
.....................................................................................................................................................................................CTGT-AAGGTTTTAAGACTCCGC..............................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0
......................................................................................................................................................................................................CTCCGCAGAACAATTAT---AAGCA-ATCATT....................................................................................	28	1	1.00	1	1	0	0	0	0	0	0
.......................................................................................................................................................................CGTTCAATTTTCGCCTGT-AAGGT...........................................................................................................................	23	1	1.00	1	0	0	0	0	1	0	0
..............................................................................................................................................ATGCGAAGTC-GTTCCCCTCATTGGCGG................................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0	0
..............................................................................................................................................................................................................................A-ATCATTCACCCGCGTCCAAGTG....................................................................	23	1	1.00	1	0	0	0	0	1	0	0
............................................................................................................................................................................................................................................................AATTGGTTCGTGGTTTTGGATT........................................	22	1	1.00	1	0	0	0	1	0	0	0
..............................................................................................................................................ATGCGAAGTC-GTTCCCCTCAC......................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0
......................................................................................................................................................................................................CTCCGCAGAACAATTAT---AAGCA-ATCATTC...................................................................................	29	1	1.00	1	0	1	0	0	0	0	0
.......................................................................................................................................................................................................................................ACCCGCGTCCAAGTGAAGCTCAATTGGTT......................................................	29	1	1.00	1	0	0	0	0	1	0	0
..............................................................................................................................................ATGCGAAGTC-GTTCCCCTCATTGGCGTTC..............................................................................................................................................	29	1	1.00	1	1	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................CTCAATTGGTTCGTGGTTTTGGATTTGCT....................................	29	1	1.00	1	0	1	0	0	0	0	0
...................................................................................................................................................................................................................TTAT---AAGCA-ATCATTCACCCGCGTCCAAG......................................................................	29	1	1.00	1	0	0	0	0	1	0	0
.................................................................................................................................................................................................................................TCATTCACCCGCGTCCAAG......................................................................	19	1	1.00	1	0	1	0	0	0	0	0
...............................................................................................................................................................................................TTTAAGACTCCGCAGAACAATTAT---AAGC............................................................................................	28	1	1.00	1	1	0	0	0	0	0	0
..................................................................................................................................................GAAGTC-GTTCCCCTCATTGGC..................................................................................................................................................	21	1	1.00	1	0	0	0	0	1	0	0
..................................................................................................................................................................................................................................................................TTCGTGGTTTTGGATTTGC.....................................	19	1	1.00	1	0	0	0	0	0	1	0
...................................................................................................................................................................................................................TTAT---AAGCA-ATCATTCACCCGCGTCCA........................................................................	27	1	1.00	1	0	0	0	0	1	0	0
............................................................................................................................................................................................................................................................AATTGGTTCGTGGTTTTGGATTTG......................................	24	1	1.00	1	0	0	0	0	0	1	0
....................................................................................................................................................................................................................TAT---AAGCA-ATCATTCACCCGCGTCCAAG......................................................................	28	1	1.00	1	0	0	0	0	1	0	0
..............................................................................................................................................ATGCGAAGTC-GTTCCCCT.........................................................................................................................................................	18	1	1.00	1	0	0	0	0	1	0	0
......................................................................................................................................................................................................................................................AAGCTCAATTGGTTCGTGGTTTTGGA..........................................	26	1	1.00	1	1	0	0	0	0	0	0
....................................................................................................................................................AGTC-GTTCCCCTCATTGGCG.................................................................................................................................................	20	1	1.00	1	0	0	0	1	0	0	0
.............................................................................................................................................................................................................................................................ATTGGTTCGTGGTTTTGGAT.........................................	20	1	1.00	1	0	0	0	0	1	0	0
............................................................................................................................................................................................................................................................AATTGGTTCGTGGTTTTGGATTTGCT....................................	26	1	1.00	1	0	0	0	0	1	0	0
...............................................................................................................................................................................TTTCGCCTGT-AAGGTTTTAAGA....................................................................................................................	22	1	1.00	1	0	0	0	0	1	0	0
...........................................................................................................................................................................................AGGTTTTAAGACTCCGCAGAACA........................................................................................................	23	1	1.00	1	1	0	0	0	0	0	0
...............................................................................................................................................................................TTTCGCCTGT-AAGGTTTTAAGACTCCGC..............................................................................................................	28	1	1.00	1	0	0	0	0	0	1	0
..............................................................................................................................................ATGCGAAGTC-GTTCCCCTCATTGGCA.................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0	0
........................................................................................................................................................................GTTCAATTTTCGCCTGT-AAGGTT..........................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0
.............................................................................................................................................TATGCGAAGTC-GTTCCCCTCATTGGC..................................................................................................................................................	26	1	1.00	1	0	0	0	0	1	0	0
.......................................................................................................................................................................................................TCCGCAGAACAATTAT---AAGCA-ATCA......................................................................................	25	1	1.00	1	1	0	0	0	0	0	0
................................................................................................................................................................................................................................................................GGTTCGTGGTTTTGGATTTGC.....................................	21	1	1.00	1	0	0	0	0	1	0	0
...................................................................................................................................................................................................................................................................TCGTGGTTTTGGATTTGCTTACAAG..............................	25	1	1.00	1	0	0	0	0	0	1	0
..........................................................................................................................................................................................................................................CGCGTCCAAGTGAAGCTCAATTGGTTC.....................................................	27	1	1.00	1	0	0	0	0	1	0	0
..............................................................................................................................................................................................................................................................TTGGTTCGTGGTTTTGGA..........................................	18	1	1.00	1	1	0	0	0	0	0	0
..............................................................................................................................................................................................TTTTAAGACTCCGCAGAACA........................................................................................................	20	1	1.00	1	1	0	0	0	0	0	0
......................................................................................................................................................................................................CTCCGCAGAACAATTAT---AAGCA-ATCAT.....................................................................................	27	1	1.00	1	1	0	0	0	0	0	0
......................................................................................................................................................................................................CTCCGCAGAACAATTAT---AAGCA-ATCA......................................................................................	26	1	1.00	1	1	0	0	0	0	0	0
.....................................................................................................................................................................................................ACTCCGCAGAACAATTAT---AAGC............................................................................................	22	1	1.00	1	0	1	0	0	0	0	0
.......................................................................................................................................................................................................................................................AGCTCAATTGGTTCGTGGTTTTGGATC........................................	27	1	1.00	1	0	1	0	0	0	0	0
............................................................................................................................................................................................................................................................AATTGGTTCGTGGTTTTGGATTTGC.....................................	25	1	1.00	1	0	0	0	0	1	0	0
...................................................................................................................................................................................................................................................GTGAAGCTCAATTGGTTCGTG..................................................	21	1	1.00	1	0	0	0	0	0	1	0
.............................................................................................................................................................................ATTTTCGCCTGT-AAGGTTTTAAG.....................................................................................................................	23	1	1.00	1	0	0	0	0	1	0	0
......................................................................................................................................................................................................CTCCGCAGAACAATTAT---AAGCA-..........................................................................................	22	1	1.00	1	0	0	1	0	0	0	0
........................................................................................................................................................................................................................................CCCGCGTCCAAGTGAAGCTCAATTG.........................................................	25	1	1.00	1	1	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................TGGTTTTGGATTTGCTTACAA...............................	21	1	1.00	1	0	0	0	0	0	1	0
...............................................................................................................................................TGCGAAGTC-GTTCCCCTCATTGG...................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................CAATTGGTTCGTGGTTTTGGA..........................................	21	1	1.00	1	0	0	0	0	1	0	0
................................................................................................................................................................................................................................ATCATTCACCCGCGTCCAAGTG....................................................................	22	1	1.00	1	0	1	0	0	0	0	0
..........................................................................................................................................................................................................................................................................TTTGGATTTGCTTACAAGA--------AA...................	21	4	0.25	1	0	0	0	0	1	0	0

droYak3

TGACTTTGACTATGAGCCGTTCTACAAGGAGTTCATCACGCTGTCAAGAGGTACGTCCTCAAACTTTAATTTTTGAGTA--------------------------------------------ATTTCTTAGGTTTTTTAATGTGCGAAATCTGTTCCCCTCGTTGGCGTTCAATTTTCGCCTGT-AAGGTTTTAAGATTTCGCAGATCAAATAT---AAGCA-ATCATTCACCCGCGTCCAAGTGAAGCACAATTGGTTCGTGGTTTTGGATTGGCTTACAAAA--------TTCC--TACTTTCAGT---AA	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
..............................................................................................................................................GTGCGAAATCTGTTCCCCTCGTT.....................................................................................................................................................	23	1	53.00	53	0	25	1	1	1	3	22	0	0	0	0
..............................................................................................................................................GTGCGAAATCTGTTCCCCTCGTTGGC..................................................................................................................................................	26	1	46.00	46	5	12	23	1	0	0	5	0	0	0	0
..............................................................................................................................................GTGCGAAATCTGTTCCCCTCGTTG....................................................................................................................................................	24	1	12.00	12	0	4	1	0	1	0	6	0	0	0	0
..............................................................................................................................................GTGCGAAATCTGTTCCCCTCGTTGG...................................................................................................................................................	25	1	5.00	5	0	4	0	0	0	0	1	0	0	0	0
............................................................................................................................................................................................................................................................AATTGGTTCGTGGTTTTGGA..........................................	20	1	3.00	3	0	0	0	0	0	0	3	0	0	0	0
........................................................................................................................................................................................................................................................................GTTTTGGATTGGCTTACAAAA--------.....................	21	1	3.00	3	1	0	1	0	1	0	0	0	0	0	0
.....................................................................................................................................................ATCTGTTCCCCTCGTTGGC..................................................................................................................................................	19	1	2.00	2	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................GTTCAATTTTCGCCTGT-AAGGTTTTAAGA....................................................................................................................	29	1	2.00	2	0	0	0	0	0	0	2	0	0	0	0
..............................................................................................................................................GTGCGAAATCTGTTCCCCTCGTTGGCGT................................................................................................................................................	28	1	2.00	2	0	0	0	0	0	0	2	0	0	0	0
..............................................................................................................................................................................TTTTCGCCTGT-AAGGTTTTAAGAT...................................................................................................................	24	1	2.00	2	0	0	0	0	0	0	2	0	0	0	0
..............................................................................................................................................GTGCGAAATCTGTTCCCCTC........................................................................................................................................................	20	1	2.00	2	0	1	0	0	0	1	0	0	0	0	0
..............................................................................................................................................GTGCGAAATCTGTTCCCCTCGT......................................................................................................................................................	22	1	2.00	2	0	1	0	0	0	0	1	0	0	0	0
....................................................................................................................................................................................................................................................................CGTGGTTTTGGATTGGCTTACAAAA--------.....................	25	1	2.00	2	1	1	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................ATTTTCGCCTGT-AAGGTTTTAAGA....................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
......................................................................................................................................................................................................TTTCGCAGATCAAATAT---AAGCA-AT........................................................................................	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.................................................................................................................................................................................................................................TCATTCACCCGCGTCCAAGT.....................................................................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...............................................................................................................................................TGCGAAATCTGTTCCCCTCGTT.....................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
....................................................................................................................................................AATCTGTTCCCCTCGTTGGC..................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................ATTGGTTCGTGGTTTTGGAT.........................................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..................................................................................................................................................................................................................................CATTCACCCGCGTCCAAGTGAAGC................................................................	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..........................................................................................................................................................................TCAATTTTCGCCTGT-AAGGTTTTAAGAT...................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..............................................................................................................................................GTGCGAAATCTGTTCCCCTCG.......................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..............................................................................................................................................GTGCGAAATCTGTTCCCCT.........................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................TTCGCAGATCAAATAT---AAGCA-ATC.......................................................................................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................TCGCAGATCAAATAT---AAGCA-AT........................................................................................	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
...............................................................................................................................................................................................................TCAAATAT---AAGCA-ATCATTCACCCGCGTC..........................................................................	29	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..................................................................................................................................................................................................................................CATTCACCCGCGTCCAAGTG....................................................................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..............................................................................................................................................GTGCGAAATCTGTTCCCCTCGTTGGCGTT...............................................................................................................................................	29	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.........................................................................................................................................................................................................................................................CACAATTGGTTCGTGGTTTTGGATTGGCT....................................	29	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..........................................................................................................................................................................................................................................................................TTTGGATTGGCTTACAAAA--------.....................	19	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
....................................................................................................................................................................................................................TAT---AAGCA-ATCATTCACCCGCGT...........................................................................	23	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
............................................................................................................................................................................................................................................................AATTGGTTCGTGGTTTTGGATTGGCT....................................	26	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
......................................................................................................................................................................................................TTTCGCAGATCAAATAT---AAGCA-..........................................................................................	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
................................................................................................................................................................................................................CAAATAT---AAGCA-ATCATTCACCCGCGTC..........................................................................	28	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.....................................................................................................................................................ATCTGTTCCCCTCGTTGGCG.................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
..............................................................................................................................................GTGCGAAATCTGTTCCCCTCGTTGGCGTTC..............................................................................................................................................	30	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.......................................................................................................................................................................................................TTCGCAGATCAAATAT---AAGCA-ATCAT.....................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................TTCGCAGATCAAATAT---AAGCA-ATCATC....................................................................................	27	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................TGCGAAATCTGTTCCCCTCGTTGGC..................................................................................................................................................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.......................ACAAGGAGTTCATCACGCTGTCAAGAGC.......................................................................................................................................................................................................................................................................	28	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................CCTGT-AAGGTTTTAAGATTTCGC..............................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..............................................................................................................................................GTGCGAAATCTGTTCCCCTCGTC.....................................................................................................................................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................GTTTTAAGATTTCGCAGA...........................................................................................................	18	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................CAATTGGTTCGTGGTTTTGGATTGGC.....................................	26	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.......................................................................................................................................................................................................TTCGCAGATCAAATAT---AAGCA-ATCATT....................................................................................	27	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0

droSec2

TGACTTTGACTACGAGCCGTTTTACAAGGAGTTCATCACGTTGTCAAGAGGTAAGTCTTTC------T-----------GTCTAT------T---------------------------ATTCATTTCTTAGGGTTTTCAATGTGCGAAGTCTGTTCCCCTGTTTGGCGTTCAATTTTCGCCTAAAAAGGTTTTAAGACTTCGCAGATGAAATAT---GAGCA-ATCATTCACCCGCATCCAAGTGAAGCTCAATTGGTTCGTGGTTTTGGATTGGCTTACAAGA--------ATAA--TAAAATAAAT---AT	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
..............................................................................................................................................GTGCGAAGTCTGTTCCCCTGTTTGGC..................................................................................................................................................	26	1	86.00	86	34	31	16	5
..............................................................................................................................................GTGCGAAGTCTGTTCCCCTGTTT.....................................................................................................................................................	23	1	8.00	8	1	5	1	1
..............................................................................................................................................GTGCGAAGTCTGTTCCCCTGT.......................................................................................................................................................	21	1	5.00	5	1	0	2	2
..............................................................................................................................................GTGCGAAGTCTGTTCCCC..........................................................................................................................................................	18	1	5.00	5	0	0	4	1
........................................................................................................................................................................................................................................................................GTTTTGGATTGGCTTACAAGA--------.....................	21	1	4.00	4	0	2	2	0
.........................................................................................................................................................................................................................................................................TTTTGGATTGGCTTACAAGA--------.....................	20	1	4.00	4	0	1	3	0
..............................................................................................................................................GTGCGAAGTCTGTTCCCCT.........................................................................................................................................................	19	1	3.00	3	0	0	2	1
......................................................................................................................................................................................................CTTCGCAGATGAAATAT---GAGCA-ATCATT....................................................................................	28	1	3.00	3	0	0	3	0
..............................................................................................................................................GTGCGAAGTCTGTTCCCCTG........................................................................................................................................................	20	1	2.00	2	1	1	0	0
..............................................................................................................................................GTGCGAAGTCTGTTCCCCTGTT......................................................................................................................................................	22	1	2.00	2	0	1	0	1
.....................................................................................................................................................................................................................................................................GTGGTTTTGGATTGGCTTACAAGA--------.....................	24	1	2.00	2	0	1	0	1
..........................................................................................................................................................................................................................................................................TTTGGATTGGCTTACAAGA--------.....................	19	1	2.00	2	0	0	1	1
...............................................................................................................................................TGCGAAGTCTGTTCCCCTGTTTGGC..................................................................................................................................................	25	1	2.00	2	2	0	0	0
..................................................................................................................................................................................................................................................................TTCGTGGTTTTGGATTGGCTTACAAGA--------.....................	27	1	2.00	2	0	1	0	1
..............................................................................................................................................GTGCGAAGTCTGTTCCCCTGTTTG....................................................................................................................................................	24	1	2.00	2	0	1	1	0
.............................................................................................................................................................................................................................................................ATTGGTTCGTGGTTTTGGA..........................................	19	1	2.00	2	0	1	1	0
........................................................................................................................................................................................................TCGCAGATGAAATAT---GAGCA-ATCATTC...................................................................................	27	1	2.00	2	0	0	0	2
.........................................................................................................................................................................................................CGCAGATGAAATAT---GAGC............................................................................................	18	1	2.00	2	0	0	2	0
...................................................................................................................................................................................................................................................................TCGTGGTTTTGGATTGGCTTACAAGA--------.....................	26	1	2.00	2	1	0	0	1
......................................................................................................................................................................................................................................................................TGGTTTTGGATTGGCTTACAAGA--------.....................	23	1	2.00	2	0	0	1	1
...............................................................................................................................................................................TTTCGCCTAAAAAGGTTTTAAGACTT.................................................................................................................	26	1	1.00	1	0	0	1	0
...........................................................................................................................................................................................................CAGATGAAATAT---GAGCA-AT........................................................................................	19	1	1.00	1	0	0	1	0
......................................................................................................................................................................................................CTTCGCAGATGAAATAT---GAGCA-ATCTG.....................................................................................	27	1	1.00	1	0	1	0	0
....................................................................................................................................................AGTCTGTTCCCCTGTTTGGC..................................................................................................................................................	20	1	1.00	1	1	0	0	0
......................................................................................................................................................................................................................................................................TGGTTTTGGATTGGCTTACAAG..............................	22	1	1.00	1	0	0	1	0
..................................................................................................................................................................................................................................CATTCACCCGCATCCAAGTG....................................................................	20	1	1.00	1	0	0	1	0
.......................................................................................................................................................................................................................................................................GGTTTTGGATTGGCTTACAAGA--------.....................	22	1	1.00	1	0	1	0	0
...............................................................................................................................................TGCGAAGTCTGTTCCCCTGTTTG....................................................................................................................................................	23	1	1.00	1	1	0	0	0
.......................................................................................................................................................................................................................................ACCCGCATCCAAGTGAAGCTCAATT..........................................................	25	1	1.00	1	0	0	0	1
....................................................................................................................................................................................................................................................................CGTGGTTTTGGATTGGCTTACAAGA--------.....................	25	1	1.00	1	0	0	1	0
.......................................................................................................................................................................................................TTCGCAGATGAAATAT---GAGCA-ATCATTC...................................................................................	28	1	1.00	1	0	1	0	0
......................................................................................................................................................................................................CTTCGCAGATGAAATAT---GAGCA-ATCA......................................................................................	26	1	1.00	1	0	1	0	0
..........................................................................................................................................................................................................GCAGATGAAATAT---GAGCA-AT........................................................................................	20	1	1.00	1	0	0	1	0
.............................................................................................................................................................................................................................................ATCCAAGTGAAGCTCAATTGGT.......................................................	22	1	1.00	1	1	0	0	0
.......................................................................................................................................................................................................TTCGCAGATGAAATAT---GAGCA-ATCA......................................................................................	25	1	1.00	1	0	0	0	1
......................................................................................................................................................................................................................T---GAGCA-ATCATTCACCCGCA............................................................................	20	1	1.00	1	0	0	1	0
....................................................................................................................................................................................................................................................................CGTGGTTTTGGATTGGCTTACAAGA--------A....................	26	1	1.00	1	0	0	1	0
..............................................................................................................................................GTGCGAAGTCTGTTCCCCTGTTTGG...................................................................................................................................................	25	1	1.00	1	0	1	0	0
.......................................................................................................................................................................................................TTCGCAGATGAAATAT---GAGCA-ATCATT....................................................................................	27	1	1.00	1	1	0	0	0
...........................................................................................................................................................................................................................................................................TTGGATTGGCTTACAAGA--------.....................	18	1	1.00	1	0	0	1	0
.........................................................................................................................................................................................................................................................CTCAATTGGTTCGTGGTTTTGGATT........................................	25	1	1.00	1	0	1	0	0
.......................................................................................................................................................................................................TTCGCAGATGAAATAT---GAGCA-ATCG......................................................................................	25	1	1.00	1	0	0	0	1
......................................................................................................................................................................................................CTTCGCAGATGAAATAT---GAGCA-ATT.......................................................................................	25	1	1.00	1	0	1	0	0
......................................................................................................................................................................................................................................CACCCGCATCCAAGTGAAGCTCAATTG.........................................................	27	1	1.00	1	0	0	1	0
.............................AGTTCATCACGTTGTCAAGAGCC......................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0
.......................................................................................................................................................................................................................................ACCCGCATCCAAGTGAAGCTCAATTGG........................................................	27	1	1.00	1	0	0	0	1
.......................................................................................................................................................................................................TTCGCAGATGAAATAT---GAGC............................................................................................	20	1	1.00	1	0	0	1	0
.......GACTACGAGCCGTTTTACAAGGA............................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0
.........................................................................................................................................................................................................................................CCGCATCCAAGTGAAGCTCAATTGGTTC.....................................................	28	1	1.00	1	1	0	0	0
........................................................................................................................................................................................................TCGCAGATGAAATAT---GAGC............................................................................................	19	1	1.00	1	0	0	1	0
.................................................................................................................................................................................................................................................AAGTGAAGCTCAATTGGTTC.....................................................	20	1	1.00	1	1	0	0	0

droSim2

TGATTTTGACTACGAGCCGTTTTACAAGGAGTTCATCACGTTGTCAAGAGGTAAGTCTTTC------T-----------GTCTGT------T---------------------------ATTCATTTCGTAGGGTTTTCAATGTGCGAAGTCTGTTCCCCTGTTTGGCGTTCAATTTTCGCCTGA-AAGGTTTTAAGACTTCGCAGATCAAATAT---GAGCA-ATCATTCACCCGCATCCAAGTGAAGCTCAATTGGTTCGTGGTTTTGGATTGGCTTACAAGA--------ATAA--TAAAATAAAT---GT	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
..............................................................................................................................................GTGCGAAGTCTGTTCCCCTGTTTGGC..................................................................................................................................................	26	1	24.00	24	1	12	2	8	0	0	0	0	0	0	0	1	0	0	0	0	0
..............................................................................................................................................GTGCGAAGTCTGTTCCCCT.........................................................................................................................................................	19	1	13.00	13	5	2	5	0	0	0	0	0	0	0	0	1	0	0	0	0	0
..............................................................................................................................................GTGCGAAGTCTGTTCCCCTGTTT.....................................................................................................................................................	23	1	11.00	11	0	1	0	10	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................GTTTTGGATTGGCTTACAAGA--------.....................	21	1	9.00	9	9	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................GTGCGAAGTCTGTTCCCCTGTTTG....................................................................................................................................................	24	1	7.00	7	0	0	0	7	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................GTGCGAAGTCTGTTCCCC..........................................................................................................................................................	18	1	6.00	6	4	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................GTCTGTTCCCCTGTTTGGC..................................................................................................................................................	19	1	5.00	5	0	3	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................TTTGGATTGGCTTACAAGA--------.....................	19	1	2.00	2	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...............................................................................................................................................................................................TTTAAGACTTCGCAGATC.........................................................................................................	18	1	2.00	2	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................GTGCGAAGTCTGTTCCCCG.........................................................................................................................................................	19	1	2.00	2	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................GTGCGAAGTCTGTTCCCCTGTTTGG...................................................................................................................................................	25	1	2.00	2	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................TGCGAAGTCTGTTCCCCTGTTTGGC..................................................................................................................................................	25	1	2.00	2	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................GTGCGAAGTCTGTTCCCCC.........................................................................................................................................................	19	1	2.00	2	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................GTGCGAAGTCTGTTC.............................................................................................................................................................	15	1	2.00	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
.......................................................................................................................................................................................................TTCGCAGATCAAATAT---GAG.............................................................................................	19	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................CTTCGCAGATCAAATAT---GAGCA-AT........................................................................................	24	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................GTGCGAAGTCTGTTCCCCTG........................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
..............................................................................................................................................GTGCGAAGTCTGTTCCCCTGT.......................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0
........................................................................................................................................................................................................................................CCCGCATCCAAGTGAAGCTCAAT...........................................................	23	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................TTTCGCCTGA-AAGGTTTTAAGA....................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................CGCATCCAAGTGAAGCTCAATTGGT.......................................................	25	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
..............................................................................................................................................GTGCGAAGTCTGTTCCCAC.........................................................................................................................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................CTGA-AAGGTTTTAAGACTTCGCA.............................................................................................................	23	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................GTGCGAAGTCTGTTCCCCTGTTTGGG..................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................CTTCGCAGATCAAATAT---GAGCA-ATCATTC...................................................................................	29	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................GTTTTGGATTGGCTTACAAGG--------.....................	21	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................A-AAGGTTTTAAGACTTCGCAGA...........................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................TTTTAAGACTTCGCAGAT..........................................................................................................	18	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................GCGAAGTCTGTTCCCCTGTTTGGC..................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..................................................................................................................................................................................................................................................AGTGAAGCTCAATTGGTT......................................................	18	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................GTGCGAAGTCTGTTCCC...........................................................................................................................................................	17	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................GGTTTTGGATTGGCTTACAAGA--------.....................	22	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................GTTCAATTTTCGCCTGA-AAA.............................................................................................................................	20	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................CTTCGCAGATCAAATA....................................................................................................	16	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
..............................................................................................................................................GTGCGAAGTCTGTTCCCCTGTTTGGT..................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................CTTCGCAGATCAAATAT---GAGCA-ATCATT....................................................................................	28	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................AGTCTGTTCCCCTGTTTGG...................................................................................................................................................	19	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................GTTCGTGGTTTTGGATTGGC.....................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................TTGGATTGGCTTACAAGA--------.....................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................TTGGTTCGTGGTTTTGGATTGGCTTACA................................	28	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................TTGGATTGGCTTACAAGG--------.....................	18	2	0.50	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

dm3

TGACTTTGACTACGAGCCGTTTTACAAGGAGTTCATCACGTTGTCAAGAGGTAAGTCCTTTAAGTC----------------TGC------T---------------------------ATTCATTTCTTATGGGTTTTAATGTGCGAAGTCTGTTCCCCTGTTTGGCGTTCAATTTTCGCCTGA-AAGGTTTTAAGACTTCGTAGATCAAATAT---AAGCA-ATCATTCACCCGCATCCAAGTGAAGCTCAATTGGTTCGTGGTTTTGGATTGGCTTACAAGA--------ATAA--TAAAATAAAT---AT	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
..............................................................................................................................................GTGCGAAGTCTGTTCCCCTGTTTGGC..................................................................................................................................................	26	1	602.00	602	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	2	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	1	1	0	0	0	1	2	2	0	2	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	1	0	0	0	0	1	0	0	0	0	0	4	0	0	0	1	51	0	0	0	9	0	12	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	6	1	0	0	0	0	2	7	1	3	1	0	0	0	1	0	0	0	0	0	0	0	2	0	0	0	0	0	0	1	2	0	3	1	1	466
..............................................................................................................................................GTGCGAAGTCTGTTCCCCTGT.......................................................................................................................................................	21	1	95.00	95	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	6	10	37	2	5	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	1	0	2	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	3	0	0	0	0	1	0	0	0	0	0	1	0	1	0	0	0	0	1	2	1	1	2	0
..............................................................................................................................................GTGCGAAGTCTGTTCCCCTGTTTGGCGT................................................................................................................................................	28	1	82.00	82	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	0	0	2	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	1	1	0	0	0	2	2	0	0	0	0	1	0	0	0	0	0	59
..............................................................................................................................................GTGCGAAGTCTGTTCCCCTG........................................................................................................................................................	20	1	64.00	64	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	3	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	7	7	1	0	1	2	2	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	17	0	0	0	3	0	2	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	3	0	0	0
......................................................................................................................................................................................................CTTCGTAGATCAAATAT---AAGCA-ATCA......................................................................................	26	1	55.00	55	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	10	0	0	0	3	0	12	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	1	1	0	1	0	0	0	0	7	0	4	1	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	1	0	0	0	0	0	0
..............................................................................................................................................GTGCGAAGTCTGTTCCCCTGTT......................................................................................................................................................	22	1	45.00	45	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6	0	0	2	2	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6	0	0	0	0	0	0	0	1	3	0	0	0	0	0	0	0	0	0	1	11	0	0	0	4	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................CTTCGTAGATCAAATAT---AAGCA-ATC.......................................................................................	25	1	42.00	42	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	8	0	0	0	7	0	10	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	1	0	1	0	0	0	0	0	0	7	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................GTGCGAAGTCTGTTCCCCT.........................................................................................................................................................	19	1	40.00	40	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	3	0	0	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	2	0	0	3	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	1	0	2	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	1	0	0	0	0	0	0	1	0	1	0	2	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	1	0	0	0
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............CGAGCCGTTTTACAAGGAGTTCATCAC...................................................................................................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................CTCAATTGGTTCGTGGTTTTGG...........................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.....................................................................................................................................................................................................................................TCACCCGCATCCAAGTGAAGCTCA.............................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................ACCCGCATCCAAGTGAAGCTC..............................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................TGCGAAGTCTGTTCCCCTGTTTGGCG.................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................CAATTGGTTCGTGGTTTTGG...........................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0

droEug1

TGACTTTGACTACGAGCCTTTCTACAAGGAGTTCATCACGCTTTCAAGAGGTAATTGTTTAAAT-----------------------------------------------------------------------GTCACATATGCGAAGTCTGTTCCCCTCATTGGCATTAAATTTTTGTCTAG-GAGGTTTTAAGACTTTGCAGATTAAACAT---AAGCA-ATCATTCACCCGCGACCAAGTGAAGTCTATTTGGTTCGTGGTTTTGGATTGGCTTACAAG------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droBia1

TGACTTTGATTACGAGCCTTTTTACAAAGAATTCATCACTCTTTCAAGAGGTAAGTCAAAGCAATGGCATGTAAGATCA--------------------------------------------ACTTCTTTAAGTTTTACACATGCGAAGTCTGTTCCCCTTCTTGGCGTTGAGTTTTCGCTTGG-GCGGTTTTAAGACTTCGCAGATCAAACAA---GAGCA-ATCATTCACCCGCGTCCAAGTGAAGCCCAATGGGTTCGTGGTTTTGGATTGGCTTACAAG------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droTak1

TAATTA-G-----------------------------------------------------------------------------------------------------------------------TTGAAGATTACATATATGCGAAGTCTGTTCCCCTTGCTGGCGTTGAATTTTCGCCTGG-GAGGTTTAAAGACTTCGCAGATGAAATAT---GAGCA-ATCATTCACCCGCGTCCAAGTGAAGCTCAATTGGTGCGTGGTTTTGGATTGGCTTACAATA--------CTAA--AAATGTCTTT---AA	Size	Hit Count	Total Norm	Total
No Reads

droEle1

TGACTTCGACTACGAGCCGTTCTACAAGGAGTTCATTACGCTCTCAAGGGGTAAGAAA-------------------------------AT----------GTTTGGTTATTTTAATGAAGTCATTTCTTCAAGATGTTCATATGCGAAGTCTGTTCCCCTCGTTGGCGTTTAAATTTGGCCTTT-GAGGTTTTAAGACTTCGCAGATCAATCAT---GTGCA-ATCATTCACCCGCGTCCAAGTGAAGCCCAATTGGCTCGTGGTTTTGGATTGGCTTACAAG------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droRho1

TGACTTCGACTACGAGCCGTTCTATAAGGAGTTCATCACACTCTCAAGAGGTAAGATATGAAGAATTATTATTAGTG----------------------------------------------GAAACTTTAAGTTATACATATGCGGAGTCTGTTCCCCTCGTAGGCGTTTAAGTTTCGCCTTG-GAGGTTTTAAGACTTCGCAGATCAATCAT---GAGCA-ATCATTCACCCGCGTCCAAGTGAAGTCCAATTGGTTCGTGGTTTTGGATTGGCTTACAAGC--------C--ATAAAATCTATTTAAGGA	Size	Hit Count	Total Norm	Total
No Reads

droFic1

TGATTTTGACTACGAGCCGTTCTACAAGGAATTTATCACTTTATCAAGGGGTAAGCTTATAAAT------------GTA--------------------------------------------TTTTTTTCGGATTTTATTTTTGCGAAGTCTGTTCCCCTGGTTGGCGTTTTATTTTCGTCGGT-AAGGTTTTAAGACTTCGCAGATTAACCTT---GAGCA-ATCATTCACCCGCGTCCAAGTGAAGCCCAATTGGTTTGTGGTTTTGGATTGGCTTACAAA--------------------TCTTT---AT	Size	Hit Count	Total Norm	Total
No Reads

droKik1

TGACTTTGACTATGAGCCGTTCTACAAGGAGTTTATAACTCTATCAAGAGGTAAGATG--AGAC-ATAAA----------------AAAAG----------TTAATTA--------------------------CTTCCCAAGTTCGAAGTCTGTTCCCCTCGTTGGTGTTCAAGTCTCGCCGGA-GAGGTTTTAAGACTTCGCAGATCAAACAT---GAGCA-ATCATTCACCCGCGTCCAAGTGAAGTCCAATTAGCTTGTGGTTTTGGATTGGCTTACATGCAACTTATGTCTT--TATTTACATT---AA	Size	Hit Count	Total Norm	Total
No Reads

droAna3

CGACTTCGATTACGAACCGTTTTATAAGGAGTTTATTACACTCTCAAGGGGTACGTTAGACA-------------------------------------------------------------------CCAAATCCCCTCCATGTGATGTCTGTTCCCCTCGCTTACTTTAAA-CTTGGTTTGG-GAGGTTTAAAGACATCGCAGATCAAGCA----GAGCC-ATCATTCACCCGCATCCAAGTGAAGACATATTGGATCATGGTTTTAGATGGGCTTACA--------------------------------	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
..............................................................................................................................................ATGTGATGTCTGTTCCCCTCGCTTA...................................................................................................................................................	25	1	27.00	27	26	1	0	0	0	0
..............................................................................................................................................ATGTGATGTCTGTTCCCCTCGC......................................................................................................................................................	22	1	5.00	5	2	1	0	0	0	2
.......................................................................................................................................................................................................ATCGCAGATCAAGCA----GAGCC-ATCATT....................................................................................	26	1	5.00	5	2	2	0	0	0	1
..............................................................................................................................................ATGTGATGTCTGTTCCCCTCGCTTACTT................................................................................................................................................	28	1	4.00	4	3	1	0	0	0	0
........................................................................................................................................................................................................TCGCAGATCAAGCA----GAGCC-ATCATTC...................................................................................	26	1	4.00	4	3	1	0	0	0	0
.......................................................................................................................................................................................................ATCGCAGATCAAGCA----GAGC............................................................................................	19	1	3.00	3	0	1	0	0	1	1
.......................................................................................................................................................................................................ATCGCAGATCAAGCA----GAGCC-ATC.......................................................................................	23	1	3.00	3	2	1	0	0	0	0
......................................................................................................................................................................................................CATCGCAGATCAAGCA----GAGCC-ATCAT.....................................................................................	26	1	3.00	3	3	0	0	0	0	0
..............................................................................................................................................ATGTGATGTCTGTTCCCCTCGCT.....................................................................................................................................................	23	1	3.00	3	2	0	0	0	1	0
.................................................................................................................................................................................................................AAGCA----GAGCC-ATCATTCACCCGCATCC.........................................................................	27	1	2.00	2	2	0	0	0	0	0
..............................................................................................................................................ATGTGATGTCTGTTCCCCTCGCTTACT.................................................................................................................................................	27	1	2.00	2	2	0	0	0	0	0
......................................................................................................................................................................................................CATCGCAGATCAAGCA----GAGCC-ATCATT....................................................................................	27	1	2.00	2	2	0	0	0	0	0
........................................................................................................................................................................................................TCGCAGATCAAGCA----GAGCC-ATC.......................................................................................	22	1	2.00	2	2	0	0	0	0	0
.......................................................................................................................................................................................................ATCGCAGATCAAGCA----GAGCC-ATCAT.....................................................................................	25	1	2.00	2	1	0	0	0	1	0
.................................................................................................................................................................................................................................................................GATCATGGTTTTAGATGGGC.....................................	20	1	2.00	2	0	2	0	0	0	0
.........................................................................................................................................................................................................CGCAGATCAAGCA----GAGCC-ATC.......................................................................................	21	1	1.00	1	0	0	0	0	0	1
..............................................................................................................................................ATGTGATGTCTGTTCCCCTCGCTT....................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0
................................................................................................................................................................................................TAAAGACATCGCAGATCAAGC.....................................................................................................	21	1	1.00	1	0	0	0	0	1	0
...........................................................................................................................................................................AAA-CTTGGTTTGG-GAGGT...........................................................................................................................	18	1	1.00	1	1	0	0	0	0	0
...................................................................................................................................................................................................................................................................TCATGGTTTTAGATGGGCT....................................	19	1	1.00	1	0	1	0	0	0	0
.....................................................................................................................................................................................................................................................................ATGGTTTTAGATGGGCTTACA--------------------------------	21	1	1.00	1	1	0	0	0	0	0
........................................................................................................................................................................................................TCGCAGATCAAGCA----GAGCC-ATCATT....................................................................................	25	1	1.00	1	0	0	0	0	0	1
......................................................................................................................................................................................................CATCGCAGATCAAGCA----GAGCC-..........................................................................................	21	1	1.00	1	0	1	0	0	0	0
.....................................................................................................................................................................................................................................................GAAGACATATTGGATCATGGTT...............................................	22	1	1.00	1	0	0	0	0	0	1
.......................................................................................................................................................................................................ATCGCAGATCAAGCA----GAGCC-ATCATTC...................................................................................	27	1	1.00	1	0	1	0	0	0	0
.....................................................................................................................................................................................................................................................................ATGGTTTTAGATGGGCTT...................................	18	1	1.00	1	0	0	1	0	0	0
.............................................................................................................................................................................................................GATCAAGCA----GAGCC-ATCATTCACCCGCA............................................................................	28	1	1.00	1	0	1	0	0	0	0
................................................................................................................................................................................................................................................CAAGTGAAGACATATTGGATC.....................................................	21	1	1.00	1	0	1	0	0	0	0
..............................................................................................................................................ATGTGATGTCTGTTCCCCTCG.......................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
.............................................................................................................................................................CCCTCGCTTACTTTAAA-CTTGGTTTGG-................................................................................................................................	27	1	1.00	1	1	0	0	0	0	0
...................................................................................................................................................................CTTACTTTAAA-CTTGGTTTGG-................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0
......................................................................................................................................................................................................CATCGCAGATCAAGCA----GAGCC-ATCATC....................................................................................	27	1	1.00	1	0	1	0	0	0	0
...........................................................................................................................................................................AAA-CTTGGTTTGG-GAGGTTTAAAGAC...................................................................................................................	26	1	1.00	1	0	0	0	0	1	0
.................................................................................................................................................................CGCTTACTTTAAA-CTTGGTTTGG-................................................................................................................................	23	1	1.00	1	0	0	1	0	0	0
......................................................................................................................................................................................................CATCGCAGATCAAGCA----GAGCC-AC........................................................................................	23	1	1.00	1	0	1	0	0	0	0
.......................................................................................................................................................................................................ATCGCAGATCAAGCA----GAGCC-AT........................................................................................	22	1	1.00	1	0	1	0	0	0	0
..............................................................................................................................................................................................................................C-ATCATTCACCCGCATCCAAGT.....................................................................	22	1	1.00	1	0	1	0	0	0	0
................................................................................................................................................GTGATGTCTGTTCCCCTCGCTTAC..................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0
........................................................................................................................................................................................................TCGCAGATCAAGCA----GAGCC-ATCAT.....................................................................................	24	1	1.00	1	0	0	0	0	0	1
..................................................................................................................................................................................................................................CATTCACCCGCATCCAAGTGAAGACAT.............................................................	27	1	1.00	1	0	1	0	0	0	0
...............................................................................................................................................TGTGATGTCTGTTCCCCTCGCTTA...................................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0
..............................GTTTATTACACTCTCAAGGGC.......................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0
...........................................................................................................................................................................AAA-CTTGGTTTGG-GAGGTTTAAAGACATC................................................................................................................	29	1	1.00	1	0	1	0	0	0	0
...........................................................................................................................................TCCATGTGATGTCTGTTCCCC..........................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
....................................................................................................................................................................................................................................................................CATGGTTTTAGATGGGCTT...................................	19	1	1.00	1	0	0	0	0	0	1

droBip1

TGACTTCGACTACGAACCGTTTTATAAGGAGTTCATTACGCTCTCAAGGGGTAAGTTAGAAA-TCATAG------------------------------------------------------------------TACCTCCATGTTATGTCTGTTCCCCTCGCTTGCTTCGAA-GTTAGTTTGG-GAGGTTTAAAGACATCGCAGATCAAGCA----GAGCC-ATCATTCACCCGTATCCAAGTGAAGACTTATTGGATCATGGTTTTAGATGGGCTTACAATA--------ATAT--AATTCTCATA---AT	Size	Hit Count	Total Norm	Total
No Reads

dp5

CGACTTTGACTACGGTCCTTTTTACAAGGAATTTATAACCCTGTCGCGAGGTGAGTGACGAAACTATAGT----------------AGAAC----------GTATGTATA----------------------------TTTTATGCGAAGTCTGTTCCCCTCCGTGGCGTCCAGAGATCGCCTTG-GAGGTTTAAGTACTTCGCAGAGCAACTGT---AGCAA-ATCATTCACCTGCGTCCAAGTGAAGTTAAATTTGGATGTGGTTTTGGGTCTGCTCACA--------------------------------	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
..............................................................................................................................................ATGCGAAGTCTGTTCCCCTCCGTGGC..................................................................................................................................................	26	1	16.00	16	0	12	3	1	0	0	0	0	0	0
..............................................................................................................................................ATGCGAAGTCTGTTCCCCTCCGTG....................................................................................................................................................	24	1	13.00	13	0	11	0	0	0	0	2	0	0	0
..............................................................................................................................................ATGCGAAGTCTGTTCCCCTCCGTGG...................................................................................................................................................	25	1	8.00	8	0	6	0	0	1	0	1	0	0	0
......................................................................................................................................................................................................CTTCGCAGAGCAACTGT---AGCAA-ATC.......................................................................................	25	1	4.00	4	0	2	0	0	0	0	0	0	2	0
.......................................................................................................................................................................................................TTCGCAGAGCAACTGT---AGCAA-ATC.......................................................................................	24	1	3.00	3	0	2	1	0	0	0	0	0	0	0
......................................................................................................................................................................................................CTTCGCAGAGCAACTGT---AGCAA-ATCA......................................................................................	26	1	3.00	3	0	3	0	0	0	0	0	0	0	0
..............................................................................................................................................ATGCGAAGTCTGTTCCCCTCCGTGGCGTC...............................................................................................................................................	29	1	2.00	2	0	0	0	1	0	0	1	0	0	0
......................................................................................................................................................................................................CTTCGCAGAGCAACTGT---AGCAA-ATCATT....................................................................................	28	1	2.00	2	0	1	1	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................TGTGGTTTTGGGTCTGCTCAC.................................	21	1	2.00	2	0	0	0	0	0	1	1	0	0	0
......................................................................................................................................................................................................CTTCGCAGAGCAACTGT---AGCAA-AT........................................................................................	24	1	2.00	2	0	1	0	0	0	0	0	0	1	0
..............................................................................................................................................ATGCGAAGTCTGTTCCCCTCCGT.....................................................................................................................................................	23	1	2.00	2	0	0	1	0	1	0	0	0	0	0
...............................................................................................................................................TGCGAAGTCTGTTCCCCTCCGTG....................................................................................................................................................	23	1	2.00	2	0	2	0	0	0	0	0	0	0	0
...............................................................................................................................................TGCGAAGTCTGTTCCCCTCCGTGG...................................................................................................................................................	24	1	2.00	2	0	2	0	0	0	0	0	0	0	0
..............................................................................................................................................ATGCGAAGTCTGTTCCCCTCC.......................................................................................................................................................	21	1	2.00	2	0	1	0	1	0	0	0	0	0	0
............................................................................................................................................................CCCCTCCGTGGCGTCCAGAGATCGCCT...................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	1	0	0	0
......................................................................................................................................................................................................CTTCGCAGAGCAACTGT---AGCAA-ATCAC.....................................................................................	27	1	1.00	1	0	0	1	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................GT---AGCAA-ATCATTCACCTGCGTC..........................................................................	23	1	1.00	1	0	0	0	1	0	0	0	0	0	0
......................................................................................................................................................................GCGTCCAGAGATCGCCTTG-GAGGTT..........................................................................................................................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0
......................................................................................................................................................................................................CTTCGCAGAGCAACTGT---AGCAA-..........................................................................................	22	1	1.00	1	0	0	0	0	0	1	0	0	0	0
...............................................................................................................................................TGCGAAGTCTGTTCCCCT.........................................................................................................................................................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................TCGCAGAGCAACTGT---AGCAA-ATCATT....................................................................................	26	1	1.00	1	0	0	0	1	0	0	0	0	0	0
..............................ATTTATAACCCTGTCGCGAGC.......................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................GTACTTCGCAGAGCAACTGT---A...............................................................................................	21	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................TCCCCTCCGTGGCGTCCAGAGATCGCCT...................................................................................................................................	28	1	1.00	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................TCGCAGAGCAACTGT---AGCAA-ATC.......................................................................................	23	1	1.00	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................TGCGAAGTCTGTTCCCCTCCGTGGC..................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................................GAGATCGCCTTG-GAGGTTT.........................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................TGT---AGCAA-ATCATTCACCTGCGTC..........................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................ATCATTCACCTGCGTCCAAGT.....................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0
..............................................................................................................................................ATGCGAAGTCTGTTCCCCTCCGTGGCGT................................................................................................................................................	28	1	1.00	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................TGTGGTTTTGGGTCTGCTCACA--------------------------------	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................T---AGCAA-ATCATTCACCTGCGTC..........................................................................	22	1	1.00	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................AGTCTGTTCCCCTCCGTGG...................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................CTTCGCAGAGCAACTGT---AGC.............................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................TGTGGTTTTGGGTCTGCTCA..................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................CCTGCGTCCAAGTGAAGTTAAATTTG........................................................	26	1	1.00	1	0	1	0	0	0	0	0	0	0	0

droPer2

CGACTTTGACTACTGTCCTTTTTACAAGGAATTTATAACCCTGTCGCGAGGTGAGTGACGAAACTATAGT----------------AGAAC----------GTATGTATA----------------------------TTTTATGCGAAGTCTGTTCCCCTCCGTGGCGTCCAGAGATCGCCTTG-GAGGTTTAAGTACTTCGCAGAGCAACTGT---AGCAA-ATCATTCACCTGCGTCAAAGTGAAGTTAAATTTGGATGTGGTTTTGGGTCTGCTCACA--------------------------------	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
..............................................................................................................................................ATGCGAAGTCTGTTCCCCTCCGTG....................................................................................................................................................	24	1	24.00	24	16	2	3	0	0	3
..............................................................................................................................................ATGCGAAGTCTGTTCCCCTCCGTGGC..................................................................................................................................................	26	1	12.00	12	9	3	0	0	0	0
........................................................................................................................................................................GTCCAGAGATCGCCTTG-GA..............................................................................................................................	19	1	4.00	4	4	0	0	0	0	0
..............................................................................................................................................................................................................AGCAACTGT---AGCAA-ATCATTCACCTGCGT...........................................................................	29	1	4.00	4	4	0	0	0	0	0
..............................................................................................................................................ATGCGAAGTCTGTTCCCCT.........................................................................................................................................................	19	1	3.00	3	3	0	0	0	0	0
..............................................................................................................................................ATGCGAAGTCTGTTCCCCTCCGTGGCGT................................................................................................................................................	28	1	3.00	3	1	1	0	0	0	1
..............................................................................................................................................ATGCGAAGTCTGTTCCCCTCCGTGG...................................................................................................................................................	25	1	3.00	3	0	1	1	0	0	1
..............................................................................................................................................ATGCGAAGTCTGTTCCCCTCC.......................................................................................................................................................	21	1	2.00	2	0	1	0	1	0	0
........................................................................................................................................................................................................................................................................GTTTTGGGTCTGCTCACA--------------------------------	18	1	2.00	2	0	0	2	0	0	0
......................................................................................................................................................................................................CTTCGCAGAGCAACTGT---AGCAA-ATCA......................................................................................	26	1	2.00	2	0	2	0	0	0	0
..............................................................................................................................................................................................................AGCAACTGT---AGCAA-ATCATTCACC................................................................................	24	1	2.00	2	2	0	0	0	0	0
................................................................................................................................................................................................................CAACTGT---AGCAA-ATCATTCACCTGC.............................................................................	25	1	2.00	2	2	0	0	0	0	0
....................................................................................................................................................AGTCTGTTCCCCTCCGTGG...................................................................................................................................................	19	1	1.00	1	1	0	0	0	0	0
...............................................................................................................................................TGCGAAGTCTGTTCCCCTCCGTG....................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0
...................................................................................................................................................................................................................................................GTGAAGTTAAATTTGGATGT...................................................	20	1	1.00	1	1	0	0	0	0	0
.......................................................................................................................................................................................................................................................................GGTTTTGGGTCTGCTCAC.................................	18	1	1.00	1	1	0	0	0	0	0
...................................................................................................................................................................................................................................................GTGAAGTTAAATTTGGATGC...................................................	20	1	1.00	1	1	0	0	0	0	0
..........................................................................................................................................................................................GAGGTTTAAGTACTTCGCAGAGCA........................................................................................................	24	1	1.00	1	0	0	0	0	1	0
................................................................................................................................................................................................................CAACTGT---AGCAA-ATCATTCACCTGCGT...........................................................................	27	1	1.00	1	1	0	0	0	0	0
......................................................................................................................................................................GCGTCCAGAGATCGCCTTG-GA..............................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
.............................................................................................................................................TATGCGAAGTCTGTTCCCCTCCGTGG...................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0
....................................................................................................................................................AGTCTGTTCCCCTCCGTGGC..................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
........................................................................................................................................................................................................TCGCAGAGCAACTGT---AGCAA-ATC.......................................................................................	23	1	1.00	1	0	1	0	0	0	0
..............................................................................................................................................................CCTCCGTGGCGTCCAGAGATCGCCTTG-................................................................................................................................	27	1	1.00	1	0	0	1	0	0	0
...................................................................................................................................................................................................................................................GTGAAGTTAAATTTGGATGTGG.................................................	22	1	1.00	1	0	0	1	0	0	0
......................................................................................................................................................................................................CTTCGCAGAGCAACTGT---AGCAA-ATCATT....................................................................................	28	1	1.00	1	1	0	0	0	0	0
......................................................................................................................................................................................................CTTCGCAGAGCAACTGT---AGCAA-ATC.......................................................................................	25	1	1.00	1	0	1	0	0	0	0
........................................................................................................................................................................GTCCAGAGATCGCCTTG-GG..............................................................................................................................	19	1	1.00	1	1	0	0	0	0	0

droWil2

TGAATTTGACTATGAACCGTTCTACAAGGAGTTTATAACCTTGTCGCGAGGTAAGCATTGGAAG-----------------------------------------------------------------------GGCTGCTGTGCGAAACCTGTTCCCCTTGCTGGCGTGCAGTGATAGCCTTC-AAGGTTTTAAGGTTTCGCAAATCAAATGTACAGAGCA-AAAATTCACCCGCCTCCAAGTGAAGCACTATTGGTCAGCGGTTTTGATTTTGCTTACA--------------------------------	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
..............................................................................................................................................GTGCGAAACCTGTTCCCCTTGCTGGC..................................................................................................................................................	26	1	4.00	4	2	0	0	2	0
..............................................................................................................................................GTGCGAAACCTGTTCCCCTTGCT.....................................................................................................................................................	23	1	3.00	3	0	1	1	1	0
.......................................................................................................................................................................................................TTCGCAAATCAAATGTACAGAGC............................................................................................	23	1	1.00	1	0	0	1	0	0
.......................................................................................................................................................................................................TTCGCAAATCAAATGTACAGAGCA-AA........................................................................................	26	1	1.00	1	0	0	0	0	1
.....................................................................................................................................................................................................................GTACAGAGCA-AAAATTCACCCGCCTC..........................................................................	26	1	1.00	1	0	1	0	0	0
...................................................................................................................................................................................................................................................GTGAAGCACTATTGGTCAGCGGTTTTGA...........................................	28	1	1.00	1	0	0	1	0	0
..............................................................................................................................................GTGCGAAACCTGTTCCCCTTGCTGG...................................................................................................................................................	25	1	1.00	1	0	1	0	0	0
.............................................................................................................................................................................................................................................................ATTGGTCAGCGGTTTTGAT..........................................	19	1	1.00	1	0	0	0	0	1
..............................................................................................................................................GTGCGAAACCTGTTCCCCTTGCTGGCGT................................................................................................................................................	28	1	1.00	1	0	0	1	0	0
...............................................................................................................................................TGCGAAACCTGTTCCCCTTGCTGGCGTG...............................................................................................................................................	28	1	1.00	1	0	0	0	0	1
..............................................................................................................................................GTGCGAAACCTGTTCCCCTTG.......................................................................................................................................................	21	1	1.00	1	0	0	0	0	1
..............................................................................................................................................GTGCGAAACCTGTTCCCCTTGCTGGCG.................................................................................................................................................	27	1	1.00	1	0	1	0	0	0
....................................................................................................................................................AACCTGTTCCCCTTGCTGGCGT................................................................................................................................................	22	1	1.00	1	0	1	0	0	0
.................................................................................................................................................................................................................................................................GTCAGCGGTTTTGATTTTGCTTACA--------------------------------	25	1	1.00	1	0	0	0	0	1
..............................................................................................................................................................CCTTGCTGGCGTGCAGTGATAGCCT...................................................................................................................................	25	1	1.00	1	0	0	0	0	1
..........................................................................................................................................................................................................................GAGCA-AAAATTCACCCGCCTC..........................................................................	21	1	1.00	1	0	1	0	0	0
.......................................................................................................................................................................................................TTCGCAAATCAAATGTACAGAGCA-AAAA......................................................................................	28	1	1.00	1	0	1	0	0	0
....................................................................................................................................................AACCTGTTCCCCTTGCTGG...................................................................................................................................................	19	1	1.00	1	0	0	0	0	1

droVir3

TGACTTCAACTATGACCCCTTCTACAAGGAGTTCATAACGCTGTCGAGAGGTAAGCAGCCCAAGCCTGGC----------------CACA------------------------------------------------GGATGTGCGACATCTGTTCCCCTTGCTGGCGTGCAGTTGTAGCCAAA-AAGGTTTTAAGATCTCGCAGAGCAAACT----AAGCAAATGTTTCACTCGCAACCAATCGCAGTTGTATTGGGCTGCGCTTTTGTATTTGCTGACACTA--------TTCA--TA-------------	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
..............................................................................................................................................GTGCGACATCTGTTCCCCTTGCTGGC..................................................................................................................................................	26	1	74.00	74	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	72
..............................................................................................................................................GTGCGACATCTGTTCCCCT.........................................................................................................................................................	19	1	8.00	8	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	6
..............................................................................................................................................GTGCGACATCTGTTCCCCTTGCT.....................................................................................................................................................	23	1	7.00	7	0	0	6	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................GTGCGACATCTGTTCCCCTTGCTGGCGT................................................................................................................................................	28	1	6.00	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	3
.......................................................................................................................................................................................................CTCGCAGAGCAAACT----AAGCAAATGT......................................................................................	25	1	5.00	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
..............................................................................................................................................GTGCGACATCTGTTCCCCTTGCTGG...................................................................................................................................................	25	1	5.00	5	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4
......................................................................................................................................................................................................TCTCGCAGAGCAAACT----AAGCAAATG.......................................................................................	25	1	5.00	5	1	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
.......................................................................................................................................................................................................CTCGCAGAGCAAACT----AAGCAAAT........................................................................................	23	1	5.00	5	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
....................................................................................................................................................................................................................................................................TGCGCTTTTGTATTTGCTGACACTA--------.....................	25	1	4.00	4	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................TCTCGCAGAGCAAACT----AAGCAAAT........................................................................................	24	1	3.00	3	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................CTCGCAGAGCAAACT----AAGCAAATGTT.....................................................................................	26	1	3.00	3	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................CTCGCAGAGCAAACT----AAGCAAATG.......................................................................................	24	1	3.00	3	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................GTGCGACATCTGTTCCCCTTG.......................................................................................................................................................	21	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3
........................................................................................................................................................................................................TCGCAGAGCAAACT----AAGCAAATG.......................................................................................	23	1	2.00	2	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................TTTCACTCGCAACCAATC.....................................................................	18	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2
...............................................................................................................................................TGCGACATCTGTTCCCCTTGCTGGC..................................................................................................................................................	25	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2
..............................................................................................................................................GTGCGACATCTGTTCCCC..........................................................................................................................................................	18	1	2.00	2	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1
........................................................................................................................................................................................................TCGCAGAGCAAACT----AAGCAAATGTTT....................................................................................	26	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................GTGCGACATCTGTTCCCCTTGCTG....................................................................................................................................................	24	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2
.......................................................................................................................................................................................................CTCGCAGAGCAAACT----AAGCAAATGTTTC...................................................................................	28	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
..............................................................................................................................................................................................................................................................TTGGGCTGCGCTTTTGTATTTG......................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
...........................................................................................................................................................................................................................................................GTATTGGGCTGCGCTTTTGTAT.........................................	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................TCTGTTCCCCTTGCTGGCGT................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................TCGCAGAGCAAACT----AAGCAAATGT......................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................GATCTCGCAGAGCAAACT----AAGCAAATG.......................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................CACTCGCAACCAATCGCAGTTGTATT..........................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................CGCAGTTGTATTGGGCTGCGCTTTTGTATTTGCTGACACT..............................	40	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................AGTTGTATTGGGCTGCGCTTTTGTATT........................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
....................................................................................................................................................................................................GATCTCGCAGAGCAAACT----AAGCAAAT........................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................TGCGACATCTGTTCCCCTTGCTGGCA.................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1
...........................................................................................................................................................................................AGGTTTTAAGATCTCGCAGAGCAAACT----................................................................................................	27	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................CCCCTTGCTGGCGTGCAGTTGTAGCCAA..................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................GCGCTTTTGTATTTGCTGACACTA--------.....................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................TTTGTATTTGCTGACACTA--------.....................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................GTTCCCCTTGCTGGCGTGCAGTT..........................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................GCTGGCGTGCAGTTGTAGC.....................................................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
.......................................................................................................................................................................................................CTCGCAGAGCAAACT----AAGCAAATGTTT....................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
.................................................................................................................................................................................................................................................AATCGCAGTTGTATTGGGC......................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................ATCTGTTCCCCTTGCTGGCGTG...............................................................................................................................................	22	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................TTTGTATTTGCTGACACT..............................	18	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................TCGCAGAGCAAACT----AAGCAAATGTTTC...................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................ACATCTGTTCCCCTTGCTG....................................................................................................................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................TGCGACATCTGTTCCCCTTGCTGG...................................................................................................................................................	24	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................CATCTGTTCCCCTTGCTGGCGT................................................................................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................GTGCGACATCTGTTCCCCTTGCTGGCGTG...............................................................................................................................................	29	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0
..............................................................................................................................................................CCTTGCTGGCGTGCAGTTGTAGCCAA..................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................CGCTTTTGTATTTGCTGACACTA--------.....................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................TCGCAACCAATCGCAGTTGTATTGGGC......................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
...........................................................................................................................................................................................................................................................GTATTGGGCTGCGCTTTTGTATT........................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................GCAAATGTTTCACTCGCAACC.........................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................CGCAGAGCAAACT----AAGCAAATG.......................................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
.............................................................................................................................................................................................................................................................ATTGGGCTGCGCTTTTGTATTTGCTGACACTA--------.....................	32	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
..................................................................................................................................................................GCTGGCGTGCAGTTGTAGCC....................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................ATCTGTTCCCCTTGCTGGCGTGC..............................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1
........................................................................................................................................................................................................................................................................CTTTTGTATTTGCTGACACTA--------.....................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................TCGCAGAGCAAACT----AAGCAAATGTTTCA..................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................TCGCAGTTGTATTGGGCTG....................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0
..............................................................................................................................................GTGCGACATCTGTTCCCCTT........................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1

droMoj3

TGACTTTGACTACGAGCCCTTCTACAAGGAGTTCATAACGCTGTCGCGAGGTAAGTCGTAAGCACATAAG-----ACT--------------------------------------------------------CGCTCCACATGCGACATTTGTTCCCCTTGCTGGCGTGCAGCTGTAGCCAGA-AAGGTTTCAAGATGTCGCAGAGCAAACA----GAGCAACTGTTTCACCCGCATCCAACTGAAGTACTATTGGGTTGCGCTTTTGAATTTGCTCACAAAA--------CTAC--TATT----------T	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
.......................................................................................................................................................................................................GTCGCAGAGCAAACA----GAGCAACTGT......................................................................................	25	1	19.00	19	3	0	0	0	1	15
.......................................................................................................................................................................................................GTCGCAGAGCAAACA----GAGCAACTGTTT....................................................................................	27	1	15.00	15	8	0	0	0	0	7
.......................................................................................................................................................................................................GTCGCAGAGCAAACA----GAGCAACTG.......................................................................................	24	1	9.00	9	3	0	0	0	0	6
......................................................................................................................................................................................................TGTCGCAGAGCAAACA----GAGCAACTGTTT....................................................................................	28	1	5.00	5	1	0	0	0	0	4
.......................................................................................................................................................................................................GTCGCAGAGCAAACA----GAGCAACTGTT.....................................................................................	26	1	4.00	4	2	0	0	0	0	2
......................................................................................................................................................................................................TGTCGCAGAGCAAACA----GAGCAACTGTTTC...................................................................................	29	1	3.00	3	1	0	0	0	0	2
...............................................................................................................................................TGCGACATTTGTTCCCCTTGCTGG...................................................................................................................................................	24	1	2.00	2	2	0	0	0	0	0
.......................................................................................................................................................................................................GTCGCAGAGCAAACA----GAGC............................................................................................	19	1	2.00	2	1	0	0	0	0	1
.......................................................................................................................................................................................................GTCGCAGAGCAAACA----GAGCAACT........................................................................................	23	1	2.00	2	1	0	0	0	0	1
..............................................................................................................................................ATGCGACATTTGTTCCCCTTGCTG....................................................................................................................................................	24	1	2.00	2	2	0	0	0	0	0
......................................................................................................................................................................................................TGTCGCAGAGCAAACA----GAGCAACTG.......................................................................................	25	1	2.00	2	0	0	0	1	0	1
..............................................................................................................................................ATGCGACATTTGTTCCCCTTGCTGGCGTG...............................................................................................................................................	29	1	2.00	2	1	0	0	0	1	0
.................................................................................................................................................................TGCTGGCGTGCAGCTGTAGCCAGA-................................................................................................................................	24	1	1.00	1	1	0	0	0	0	0
.........................................................................................................................................................................................................................................................................TTTTGAATTTGCTCACAAAA--------A....................	21	1	1.00	1	1	0	0	0	0	0
....................................................................................................................................................................................................................................................TGAAGTACTATTGGGTTG....................................................	18	1	1.00	1	0	1	0	0	0	0
............................................................................................................................................................CCCCTTGCTGGCGTGCAGCTGTAGC.....................................................................................................................................	25	1	1.00	1	0	0	0	1	0	0
........................................................................................................................................................................................................................................................................CTTTTGAATTTGCTCACAAAA--------.....................	21	1	1.00	1	1	0	0	0	0	0
.................................................................................................................................................................................................CAAGATGTCGCAGAGCAAACA----................................................................................................	21	1	1.00	1	0	0	0	0	0	1
.............................................................................................................................................................................................GTTTCAAGATGTCGCAGAGC.........................................................................................................	20	1	1.00	1	0	0	0	0	0	1
...........................................................................................................................................................................................................................................................CTATTGGGTTGCGCTTTTGAATTTGCTC...................................	28	1	1.00	1	1	0	0	0	0	0
..........................................................................................................................................................................GCAGCTGTAGCCAGA-AAGGTTTCAA......................................................................................................................	25	1	1.00	1	0	0	0	0	0	1
..............................................................................................................................................ATGCGACATTTGTTCCCCTTGCTGGC..................................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0
...........................................................................................................................................................TCCCCTTGCTGGCGTGCAGCTGTAGCCA...................................................................................................................................	28	1	1.00	1	1	0	0	0	0	0
...................................................................................................................................................................................................................................................................TTGCGCTTTTGAATTTGCTCACAAAA--------.....................	26	1	1.00	1	1	0	0	0	0	0
.................................................................................................................................................................................................................................................AACTGAAGTACTATTGGGT......................................................	19	1	1.00	1	0	0	0	0	0	1
........................................................................................................................................................................................................TCGCAGAGCAAACA----GAGCAACTGTTT....................................................................................	26	1	1.00	1	1	0	0	0	0	0
......................................................................................................................................................................................................................................................................CGCTTTTGAATTTGCTCACAAA..............................	22	1	1.00	1	1	0	0	0	0	0
.......................................................................................................................................................................................................GTCGCAGAGCAAACA----GAGCA...........................................................................................	20	1	1.00	1	0	0	0	0	0	1
........................................................................................................................................................................................................TCGCAGAGCAAACA----GAGCAACTG.......................................................................................	23	1	1.00	1	1	0	0	0	0	0
..............................................................................................................................................ATGCGACATTTGTTCCCCTTGCC.....................................................................................................................................................	23	1	1.00	1	0	0	0	0	1	0
...........................................................................................................................................................................................................................................................................TTGAATTTGCTCACAAAA--------.....................	18	1	1.00	1	0	0	0	0	1	0
...............................................................................................................................................TGCGACATTTGTTCCCCTTG.......................................................................................................................................................	20	1	1.00	1	1	0	0	0	0	0
...............................................................................................................................................................................................................................ACTGTTTCACCCGCATCCAAC......................................................................	21	1	1.00	1	1	0	0	0	0	0
......................................................................................................................................................................................AGA-AAGGTTTCAAGATGT.................................................................................................................	18	1	1.00	1	1	0	0	0	0	0
...........................................................................................................................................................TCCCCTTGCTGGCGTGCAG............................................................................................................................................	19	1	1.00	1	0	0	0	0	0	1
.............................................................................................................................................................................................GTTTCAAGATGTCGCAGAGCAAACA----GAG.............................................................................................	28	1	1.00	1	0	0	0	0	0	1
..............................................................................................................................................ATGCGACATTTGTTCCCCTTGCT.....................................................................................................................................................	23	1	1.00	1	1	0	0	0	0	0
.......................................................................................................................................................................................................GTCGCAGAGCAAACA----GAGCAACTGTTTC...................................................................................	28	1	1.00	1	1	0	0	0	0	0
..........................................................................................................................................................................................................GCAGAGCAAACA----GAGCAACTGTTT....................................................................................	24	1	1.00	1	0	0	0	0	0	1
........................................................................................................................................................................................A-AAGGTTTCAAGATGTCGCAGAGC.........................................................................................................	24	1	1.00	1	0	0	0	0	1	0
..............................................................................................................................................................CCTTGCTGGCGTGCAGCTGTAGCCAG..................................................................................................................................	26	1	1.00	1	1	0	0	0	0	0
.........................................................................................................................................................................................................................................................TACTATTGGGTTGCGCTTTTGAATTTGCT....................................	29	1	1.00	1	1	0	0	0	0	0
............................................................................................................................................................................................................................................................TATTGGGTTGCGCTTTTGAATT........................................	22	1	1.00	1	0	0	0	0	0	1
.........................................................................................................................................................................................................................................................TACTATTGGGTTGCGCTTTTGAATTTGC.....................................	28	1	1.00	1	1	0	0	0	0	0
..........................................................................................................................................................................................AAGGTTTCAAGATGTCGCAGAGC.........................................................................................................	23	1	1.00	1	1	0	0	0	0	0
........................................................................................................................................................................................................TCGCAGAGCAAACA----GAGCAACTGTT.....................................................................................	25	1	1.00	1	1	0	0	0	0	0
........................................................................................................................................................................................................................................................GTACTATTGGGTTGCGCTTTTGA...........................................	23	1	1.00	1	0	0	0	0	0	1
......................................................................................................................................................................................................TGTCGCAGAGCAAACA----GAGC............................................................................................	20	1	1.00	1	0	0	0	0	0	1
..................................................................................................................................................................GCTGGCGTGCAGCTGTAGCC....................................................................................................................................	20	1	1.00	1	0	0	0	0	0	1
...................................................................................................................................................................................................AGATGTCGCAGAGCAAACA----GAGCAACTG.......................................................................................	28	1	1.00	1	1	0	0	0	0	0

droGri2

TGACTTTGACTACGAGCCCTTCTACAAGGAGTTCATAACTCTGTCCAGAGGTAGGAGATCACTTTC-A-----------GATTGGGTGTAGCATTTATATTATATAT-----------------------------ATATTTTTGTGGAATCTGTTCCCCTGGTTGGCGTTGAGTTGTAGCCAAA-AAGGTTTTAAGATTTCGCACAGTAAAC-T---GGGCA-AATGTTCACTCGCATCCAACTCGAGTTGTTGTCGAATGTGCTTTTGGATTTGCCCACAA-------------------------------	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
......................................................................................................................................................................................................................T---GGGCA-AATGTTCACTCGCATCCA........................................................................	24	1	3.00	3	3	0
...................................................................................................................................................................................................................................................................ATGTGCTTTTGGATTTGCCCA..................................	21	1	2.00	2	1	1
...................................................................................................................................................................................................................................................................ATGTGCTTTTGGATTTGCCCACA................................	23	1	2.00	2	1	1
...................................................................................................................................................................................................................................................................ATGTGCTTTTGGATTTGCCC...................................	20	1	1.00	1	0	1
.....................................................................................................................................................................................................................................................................GTGCTTTTGGATTTGCCCACAA-------------------------------	22	1	1.00	1	0	1
....................................................................................................................................................................................................................................................................TGTGCTTTTGGATTTGCCCACA................................	22	1	1.00	1	0	1
......................................................................................................................................................................................................................T---GGGCA-AATGTTCACTCGCATCC.........................................................................	23	1	1.00	1	1	0
..............................................................................................................................................TTGTGGAATCTGTTCCCCTGGTT.....................................................................................................................................................	23	1	1.00	1	1	0
....................................................................................................................................................................................................................................................................TGTGCTTTTGGATTTGCCCA..................................	20	1	1.00	1	0	1
...................................................................................................................................................................................................................................................................ATGTGCTTTTGGATTTGCCCACAA-------------------------------	24	1	1.00	1	1	0
......................................................................................................................................................................................................................................................................TGCTTTTGGATTTGCCCACAA-------------------------------	21	1	1.00	1	0	1

der_627

scaffold_4770:14386271-14386421 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-19.4	-19.1	-19.1