ID:

der_60

 Coordinate:

scaffold_4690:13914763-13914825 -

 Confidence:

Known Ortholog

 Class:

Canonical miRNA

 Genomic Locale:

5pUTR

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-40.6 -40.6 -40.6

Flybase annnotation

utr5 [utr5_plus_14911]

No Repeatable elements found

Sense Strand Reads

CGCCGCGTTGTTTCGCTGCATGTGAGAGAATTCCGTGGCTGGCATCGCCCGCTGTAAATTGTAATCATCAAAGCGTTTTCTCAGAGCCGCTTGGTGTTACTTCTTACAGTGAGTGTGCCAGTCCGTACACAGAAAGAAAACCCCTTCCTTTGGTACATAACAA

***********************************.((((((((.(((.((((((((...((((.((((((.(((((((...)))).)))))))))))))...)))))))).)))))))))))....************************************ 		Read size # Mismatch Hit Count Total Norm Total V108

head

 M055

female body

 M057

embryo

 V040

embryo

 V060

head

 V107

male body
..........................................................................................TTGGTGTTACTTCTTGCAGTGA................................................... 22 1 1 678.00 678 488 112 31 22 16 9
..........................................................................................TTGGTGTTACTTCTTACAGTGA................................................... 22 0 1 231.00 231 79 39 45 66 1 1
..........................................................................................TTGGTGTTACTTCTTGCAGTG.................................................... 21 1 1 121.00 121 102 5 1 1 7 5
..........................................................................................TTGGTGTTACTTCTTGCGGTGA................................................... 22 2 1 91.00 91 67 21 1 0 1 1
..................................................GCTGTAAATTGTAATCATCA............................................................................................. 20 0 1 45.00 45 38 0 0 0 6 1
..................................................GCTGTAAATTGTAATCATCAAAGC......................................................................................... 24 0 1 29.00 29 14 1 12 1 0 1
..................................................GCTGTAAATTGTAATCATCAAAG.......................................................................................... 23 0 1 26.00 26 22 0 1 1 2 0
..................................................GCTGTAAATTGTAATCATCAA............................................................................................ 21 0 1 22.00 22 22 0 0 0 0 0
..........................................................................................TTGGTGTTACTTCTTGCGGTG.................................................... 21 2 1 22.00 22 20 2 0 0 0 0
..................................................GCTGTAAATTGTAATCATCAAA........................................................................................... 22 0 1 22.00 22 21 1 0 0 0 0
..........................................................................................TTGGTGTTACTTCTTGCAGTGT................................................... 22 2 1 19.00 19 17 0 0 1 0 1
..........................................................................................TTGGTGTTACTTCTTACAGTG.................................................... 21 0 1 15.00 15 4 2 4 5 0 0
..........................................................................................TTGGTGTTACTTCTTGCAGTGAA.................................................. 23 2 1 12.00 12 11 1 0 0 0 0
...........................................................................................TGGTGTTACTTCTTGCAGTGA................................................... 21 1 1 10.00 10 0 10 0 0 0 0
..........................................................................................TTGGTGTTACTTCTTACAGTTA................................................... 22 1 1 9.00 9 2 0 0 6 1 0
..........................................................................................TGGGTGTTACTTCTTACAGTGA................................................... 22 1 1 8.00 8 0 0 8 0 0 0
..........................................................................................TTGGTGTTACTTCTTGCAGTGAAA................................................. 24 3 1 8.00 8 7 1 0 0 0 0
.........................................................................................CTTGGTGTTACTTCTTGCAGTGA................................................... 23 1 1 8.00 8 5 0 3 0 0 0
..........................................................................................TTGGTGTTACTTCTTGTAGTGA................................................... 22 2 1 7.00 7 5 0 0 0 2 0
..........................................................................................TTGGTGTTGCTTCTTGCAGTGA................................................... 22 2 2 6.00 12 11 0 0 0 1 0
..........................................................................................TTGGTGTTACTTCTTGCAGT..................................................... 20 1 1 6.00 6 6 0 0 0 0 0
..........................................................................................TTGGTGTTACTTCTTGCAGTGG................................................... 22 2 1 6.00 6 6 0 0 0 0 0
..........................................................................................TTTGTGTTACTTCTTGCAGTGA................................................... 22 2 1 6.00 6 6 0 0 0 0 0
..........................................................................................TTGGTGTTACTTATTGCAGTGA................................................... 22 2 1 6.00 6 5 0 1 0 0 0
...........................................................................................TGGTGTTACTTCTTACAGTGA................................................... 21 0 1 5.00 5 0 5 0 0 0 0
.........................................................................................CTTGGTGTTACTTCTTACAGTGA................................................... 23 0 1 5.00 5 1 0 4 0 0 0
..........................................................................................TTGGTGTTACTTCTTGCAGTGAT.................................................. 23 2 1 5.00 5 4 0 0 0 1 0
..........................................................................................TTGGTGTTACTTCTTGAAGTGA................................................... 22 2 1 4.00 4 4 0 0 0 0 0
..........................................................................................TTGGTGTTACTTCTTGCAGTGAG.................................................. 23 1 1 4.00 4 4 0 0 0 0 0
..........................................................................................TTGGGGTTACTTCTTGCAGTGA................................................... 22 2 1 4.00 4 3 1 0 0 0 0
..........................................................................................TTGGTGTTACTTCTTTCAGTGA................................................... 22 1 1 4.00 4 2 0 0 2 0 0
..........................................................................................TGGGTGTTACTTCTTGCAGTGA................................................... 22 2 1 4.00 4 0 0 4 0 0 0
..........................................................................................TTGGCGTTACTTCTTACAGTGA................................................... 22 1 1 3.00 3 1 1 1 0 0 0
..........................................................................................TTGGTTTTACTTCTTGCAGTGA................................................... 22 2 1 3.00 3 3 0 0 0 0 0
..........................................................................................TTGGTGTTACTTCTTGCATTGA................................................... 22 2 1 3.00 3 1 2 0 0 0 0
..........................................................................................TTGGTGTTACTTCTTGCGGT..................................................... 20 2 2 2.00 4 4 0 0 0 0 0
..................................................GCTGTAAATTTTAATCATCAAAG.......................................................................................... 23 1 1 2.00 2 2 0 0 0 0 0
..........................................................................................TTGGTGTTACTTCTCGCAGTGA................................................... 22 2 1 2.00 2 2 0 0 0 0 0
..........................................................................................TTGGTGTTACTTCTTGCCGTGA................................................... 22 2 1 2.00 2 0 1 0 0 1 0
..........................................................................................TTGGTGTTACTTCTTACAGTGT................................................... 22 1 1 2.00 2 0 0 0 1 1 0
..................................................GCTGTAAATTGTAATGGCCAAAGC......................................................................................... 24 3 1 2.00 2 0 0 2 0 0 0
..........................................................................................TTGCTGTTACTTCTTGCAGTGA................................................... 22 2 1 2.00 2 1 1 0 0 0 0
..........................................................................................TGGGTGTTACTTCTTGCGGTGA................................................... 22 3 1 2.00 2 1 0 1 0 0 0
..........................................................................................TTGGTGTTAGTTCTTGCAGTGA................................................... 22 2 1 2.00 2 1 0 0 1 0 0
..........................................................................................TTGGTGTTACTTCTTACAGTGAA.................................................. 23 1 1 2.00 2 2 0 0 0 0 0
...........................................................................................TGGTGTTACTTCTTGCGGTGA................................................... 21 2 1 2.00 2 0 2 0 0 0 0
..........................................................................................TTGGTGTTACTTCTTGCAGTTA................................................... 22 2 2 2.00 4 3 0 0 1 0 0
..........................................................................................TTGGTGTTACTTCTTACAGT..................................................... 20 0 1 2.00 2 2 0 0 0 0 0
..........................................................................................TTGGTGTTCCTTCTTGCAGTGA................................................... 22 2 1 2.00 2 2 0 0 0 0 0
..........................................................................................TTGGCGTTACTTCTTGCAGTGA................................................... 22 2 1 2.00 2 2 0 0 0 0 0
...................................................CTGTAAATTGTAATCATCAAAG.......................................................................................... 22 0 1 2.00 2 0 2 0 0 0 0
..........................................................................................TTGGTGTTACTTCTTACGGTGA................................................... 22 1 1 2.00 2 2 0 0 0 0 0
..........................................................................................TTGGTGTTACTCCTTGCAGTGA................................................... 22 2 1 2.00 2 1 0 0 0 1 0
..................................................GCTGTAAATTGTAATCATCAAAGCG........................................................................................ 25 0 1 2.00 2 2 0 0 0 0 0
..........................................................................................TTGGTGTTACTTCTTACAGTGC................................................... 22 1 1 2.00 2 0 0 0 1 1 0
..................................................GCTGTAAATTGTAATCAT............................................................................................... 18 0 1 2.00 2 2 0 0 0 0 0
..........................................................................................TTGGTGTTACTTCTTGCGGTGAT.................................................. 23 3 1 2.00 2 0 0 0 0 2 0
...........................................................................................TTGTGTTACTTCTTGCAGTGA................................................... 21 2 1 2.00 2 2 0 0 0 0 0
..........................................................................................TTGGTGTTACTTCTTGCAGTGAC.................................................. 23 2 1 2.00 2 1 1 0 0 0 0
..........................................................................................TTGGTGCTACTTCTTACAGTGA................................................... 22 1 1 1.00 1 1 0 0 0 0 0
..........................................................................................TTGTTGTTACTTCTTACAGTGA................................................... 22 1 1 1.00 1 0 0 1 0 0 0
..................................................GCTGTAGATTGTAATCATCAAA........................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0
.........................................................................................CTTGGTGTTAATTCTTGCAGT..................................................... 21 2 1 1.00 1 1 0 0 0 0 0
..........................................................................................TTGGTGTTACTTCTTTCAGTTA................................................... 22 2 1 1.00 1 0 0 0 1 0 0
..........................................................................................TTGGTGTTACTACTTACAGTGA................................................... 22 1 1 1.00 1 1 0 0 0 0 0
..........................................................................................TTGGTGTTACTTCTTACCGTGC................................................... 22 2 1 1.00 1 0 0 0 1 0 0
..........................................................................................TTGGTGTTACTTCTTACCGTGA................................................... 22 1 1 1.00 1 1 0 0 0 0 0
............................................................................................GTTGTTACTTCTTACAGTGA................................................... 20 1 1 1.00 1 0 0 1 0 0 0
..........................................................................................TTGGTGTTACTTCTTACACTGA................................................... 22 1 1 1.00 1 0 0 0 1 0 0
..........................................................................................TTGGTGTTAGTTTTTACGGTGA................................................... 22 3 1 1.00 1 0 0 0 1 0 0
..................................................GATGTAAATTGTAATCATCA............................................................................................. 20 1 1 1.00 1 1 0 0 0 0 0
..................................................GCTGTAAATTGTAATCATCAAAA.......................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0
..........................................................................................TTGGTGTTACTTCTTACAGTGTA.................................................. 23 2 1 1.00 1 0 0 0 1 0 0
..............................................................................................TGTTACTTCTTGCAGTGA................................................... 18 1 2 1.00 2 2 0 0 0 0 0
...........................................................................................TGGTGTTACTTCTTGCAGTGAA.................................................. 22 2 1 1.00 1 0 1 0 0 0 0
..........................................................................................TTCGTGTTACTTCTTACAGTGA................................................... 22 1 1 1.00 1 0 0 1 0 0 0
..........................................................................................TTGGTATTACTTCTTTCAGTGA................................................... 22 2 1 1.00 1 1 0 0 0 0 0
.........................................................................................CTTGGTGTTACTTCTTGCGGT..................................................... 21 2 1 1.00 1 1 0 0 0 0 0
..................................................ACTGTAAATTGTAATCATCAAAG.......................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0
.................................................CGCTGTAAATTGTAATCATCA............................................................................................. 21 0 1 1.00 1 1 0 0 0 0 0
..........................................................................................TGGGAGTTACTTCTTACAGTGA................................................... 22 2 1 1.00 1 0 0 1 0 0 0
..........................................................................................TTGGTGTTACTTCTTGCAGTCA................................................... 22 2 1 1.00 1 1 0 0 0 0 0
.........................................................................................CTTGGTGTTACTTCTTGCAGTG.................................................... 22 1 1 1.00 1 1 0 0 0 0 0
..................................................GCTGTAAATTGTAATCATC.............................................................................................. 19 0 1 1.00 1 1 0 0 0 0 0
..........................................................................................TTGGTGTTACTTCTCGCGGTGA................................................... 22 3 1 1.00 1 1 0 0 0 0 0
..................................................GCTGTAAATTGTAATCATCG............................................................................................. 20 1 1 1.00 1 1 0 0 0 0 0
..........................................................................................TTGGTGTTACTTATTGCAGTG.................................................... 21 2 1 1.00 1 1 0 0 0 0 0
..................................................GCTGTAAATTGTAATAATCAAA........................................................................................... 22 1 1 1.00 1 1 0 0 0 0 0
..........................................................................................TTGGTCTTACTTCTTGCAGTGT................................................... 22 3 1 1.00 1 1 0 0 0 0 0
............................................................................................GGTGTTACTTCTTGCAGTGA................................................... 20 1 1 1.00 1 0 1 0 0 0 0
..........................................................................................TTGGTATTACTTCTTGCAGTGA................................................... 22 2 1 1.00 1 1 0 0 0 0 0
..........................................................................................TTGGTGTTACTTCTTGCAGTGGA.................................................. 23 3 1 1.00 1 1 0 0 0 0 0
..........................................................................................TTGGAGTTACTTCTTGCAGTGA................................................... 22 2 1 1.00 1 0 1 0 0 0 0
.................................................CGCTGTAAATTGTAATCATCAAAG.......................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0
..............................TTCCGTGGCTGGCATCGCCC................................................................................................................. 20 0 1 1.00 1 0 1 0 0 0 0
..........................................................................................TTGTTGTTACTTCTTGCAGTG.................................................... 21 2 2 1.00 2 1 0 0 0 0 1
..........................................................................................TTGGTGTTATTTCTTACAGTGA................................................... 22 1 1 1.00 1 0 1 0 0 0 0
..........................................................................................TTGGTGTTACTTCTTGCTGTGA................................................... 22 2 1 1.00 1 1 0 0 0 0 0
..................................................GCTGTAACTTGTAATCATCAAAGC......................................................................................... 24 1 1 1.00 1 1 0 0 0 0 0
..........................................................................................TTGGAGTTACTTCTTACAGTGA................................................... 22 1 1 1.00 1 0 0 0 1 0 0
..........................................................................................TTGAAGTTACGTCTTACAGTGA................................................... 22 3 1 1.00 1 0 0 0 1 0 0
..........................................................................................TTTGTGTTACTTCTTACAGTGA................................................... 22 1 1 1.00 1 0 1 0 0 0 0
..........................................................................................TTGGTGTTACTTCTTGCGGTGAA.................................................. 23 3 1 1.00 1 1 0 0 0 0 0
..................................................GCTGTAAATTGTAACCATCAA............................................................................................ 21 1 1 1.00 1 1 0 0 0 0 0
..................................................GCTGTAAATTGTAGTCATCAAAG.......................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0
..........................................................................................TTGGTGTTACTTCTTACATTGA................................................... 22 1 1 1.00 1 0 0 0 1 0 0
...........................................................................................TGGTGTTACTTCTTGCAGTG.................................................... 20 1 1 1.00 1 0 1 0 0 0 0
..........................................................................................TTGGAGTTACTTCTTACCGTGA................................................... 22 2 1 1.00 1 0 0 0 1 0 0
.............................................................................................GTGTTACTTCTTGCAGTGA................................................... 19 1 1 1.00 1 0 1 0 0 0 0
..........................................................................................TTGGTGTTACTTCTTACAGTGAC.................................................. 23 1 1 1.00 1 0 0 1 0 0 0
..........................................................................................TTGGTGTTACTTCTTGCAGGGA................................................... 22 2 1 1.00 1 1 0 0 0 0 0
............................AATTCCGTGGCTGGCATCGCCC................................................................................................................. 22 0 1 1.00 1 1 0 0 0 0 0
..........................................................................................GTGGTGTTACTTCTTGCAGTGA................................................... 22 2 1 1.00 1 1 0 0 0 0 0
..........................................................................................TTAGTGTTACTTCTTTCAGTGA................................................... 22 2 1 1.00 1 1 0 0 0 0 0
.........................................................................................CTTGGCGTTACTTCTTACAGTGA................................................... 23 1 1 1.00 1 1 0 0 0 0 0
..........................................................................................TTGGGGTTTCTTCTTACAGTGA................................................... 22 2 1 1.00 1 0 0 0 0 1 0
..........................................................................................CTGGTGTTACTTCTTACAGTGA................................................... 22 1 1 1.00 1 0 0 0 1 0 0
..........................................................................................TTGGTGTTACTTCTTTCGGTGA................................................... 22 2 1 1.00 1 0 0 0 1 0 0
.........................................................................................CTTGGTGTTACTTCTTACAGTG.................................................... 22 0 1 1.00 1 0 1 0 0 0 0
..............................................................................................TGTTACTTCTTACAGTGA................................................... 18 0 1 1.00 1 0 0 0 1 0 0
..........................................................................................TTGGTGTTACTTCTTGCAG...................................................... 19 1 1 1.00 1 1 0 0 0 0 0
..........................................................................................TTGGTGTTACTTCTTGCAGCG.................................................... 21 2 1 1.00 1 1 0 0 0 0 0
...........................................................................................TTGTGTTACCTCTTACAGTGA................................................... 21 2 1 1.00 1 1 0 0 0 0 0
..................................................GCTGTAGATTGTAATCATC.............................................................................................. 19 1 1 1.00 1 1 0 0 0 0 0
..........................................................................................TTGGTGTTACTTTTTGCAGTGA................................................... 22 2 1 1.00 1 1 0 0 0 0 0
.........................................................................................CTTGGTGTTACTTCTTGCAGT..................................................... 21 1 1 1.00 1 1 0 0 0 0 0
..........................................................................................TTGGTGTTACTTCTTGCAGCGA................................................... 22 2 1 1.00 1 1 0 0 0 0 0
..........................................................................................TTGGCGTTAGTTCTTACAGTGA................................................... 22 2 1 1.00 1 0 0 0 1 0 0
..........................................................................................TTGGTGCTACTTCTTGCAGTGA................................................... 22 2 1 1.00 1 0 1 0 0 0 0
..........................................................................................TTGGTGTTAATTCTTGCAGTGA................................................... 22 2 1 1.00 1 0 0 0 0 1 0
......................................................................................................................CAGTCCGTACACAGAAAGAAAA....................... 22 0 1 1.00 1 1 0 0 0 0 0
..........................................................................................TTAGTGTTACTTCTTGCAGTGA................................................... 22 2 1 1.00 1 1 0 0 0 0 0
..........................................................................................TTGGTGTTACTTCTTTCGGTG.................................................... 21 2 1 1.00 1 1 0 0 0 0 0
..........................................................................................TTGGTGTTACTTCTTGCAGTGC................................................... 22 2 1 1.00 1 0 0 1 0 0 0
.............................................................................................TTGTTACTTCTTGCAGTGA................................................... 19 2 3 1.00 3 3 0 0 0 0 0
..................................................GATGTAAATTGTAATCATCAAAG.......................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0
..........................................................................................TTGGTGGTACTTCTTACAGTGA................................................... 22 1 1 1.00 1 0 0 0 1 0 0
..........................................................................................TTGGTGTTACTTCTTGCGGTGG................................................... 22 3 2 0.50 1 1 0 0 0 0 0
..........................................................................................TTGGTGTTTCTTCTTACAGCCA................................................... 22 3 2 0.50 1 0 0 0 1 0 0
..........................................................................................TTGGTGTTACTTCTCGCAGTGT................................................... 22 3 2 0.50 1 1 0 0 0 0 0
..........................................................................................TTGGTGTTATTTCTTGCAGTGA................................................... 22 2 2 0.50 1 1 0 0 0 0 0
..........................................................................................ATGGTGTTACTTCTTGCAGTG.................................................... 21 2 2 0.50 1 1 0 0 0 0 0
..........................................................................................TTGGTGTTACTTCTCGCAGTG.................................................... 21 2 2 0.50 1 1 0 0 0 0 0
..........................................................................................TTGTTGTTACTTCTTGCGGTGA................................................... 22 3 2 0.50 1 1 0 0 0 0 0
..........................................................................................TTGCTGTTACTTCTTACACTGAA.................................................. 23 3 2 0.50 1 0 0 0 1 0 0
..........................................................................................TTGGAGTTGCTTCTTGCAGTGA................................................... 22 3 2 0.50 1 1 0 0 0 0 0
..........................................................................................TTGGTGTTGCTTCTTGCAGTG.................................................... 21 2 3 0.33 1 1 0 0 0 0 0
...........................................................................................TTGTGTTACTTCTTGCAGT..................................................... 19 2 3 0.33 1 1 0 0 0 0 0
..........................................................................................TTTGTGTTACTTCTTGCAGTGT................................................... 22 3 5 0.20 1 1 0 0 0 0 0
..........................................................................................TTTGTGTTGCTTCTTGCAGTGA................................................... 22 3 5 0.20 1 1 0 0 0 0 0
..........................................................................................TTGGTGTTACTTCTTTCATTTA................................................... 22 3 5 0.20 1 0 0 0 1 0 0
..........................................................................................TTGGTGTTACTTATTGCAGT..................................................... 20 2 5 0.20 1 1 0 0 0 0 0
...........................................................................................TTGTGTTACTTCTTGCAGTGG................................................... 21 3 8 0.13 1 1 0 0 0 0 0
..........................................................................................TTGGTGTTACTTCTTAGTGA..................................................... 20 3 10 0.10 1 1 0 0 0 0 0
...............................................................................................GTTGCTTCGTACAGAGAGT................................................. 19 3 16 0.06 1 0 0 0 0 0 1
..............................................................................................TGTTACTTCTTGCAGTGG................................................... 18 2 16 0.06 1 1 0 0 0 0 0
..........................................................................................TTGGTTTTACTTCTTTCAGTT.................................................... 21 3 19 0.05 1 0 0 0 1 0 0

Anti-sense strand reads

GCGGCGCAACAAAGCGACGTACACTCTCTTAAGGCACCGACCGTAGCGGGCGACATTTAACATTAGTAGTTTCGCAAAAGAGTCTCGGCGAACCACAATGAAGAATGTCACTCACACGGTCAGGCATGTGTCTTTCTTTTGGGGAAGGAAACCATGTATTGTT

************************************.((((((((.(((.((((((((...((((.((((((.(((((((...)))).)))))))))))))...)))))))).)))))))))))....*********************************** 		Read size # Mismatch Hit Count Total Norm Total

Re-alignment of all predicted orthologs

Species Coordinate ID Type Alignment
droEre2 scaffold_4690:13914713-13914875 - der_60 confident CGCCGCGTTGTTTCGCTGCATGTGAGAG---AA--------TTCCGTGGCTGGCAT--CGCCCGCTGTAAATTGTAATCATCAAAGCGTT---TT--CTCA--GAGCCGCTTGGTGTTACTTCTTACAGTGAGTGTGCCAGTC--CGTAC--------ACA--GAAAGAAAA-----CCCCTT------------------------CCTTT-GGTACAT-AA--------CAA-------
droYak3 X:7229754-7229901 + dya_52 confident CGCCGCGTTGTTTCGCTGCATGTGAGAG---AA--------TTCCGTGGCTGGCAT--CGCTCGCTGTAAATTGTAATCATCAAAGCGTT---TT--CTCA--GAGCCGCTTGGTGTTACTTCTTACAGTGAGTGTGCCAGTC--CGTAC--------ACA--GAAAGAAAA-----ACCCCTT---------------T-----------------------------------------
droSec2 scaffold_21:701202-701352 + dse_66 confident CGCCGCGTTGTTTCGCTGCATGTGAGAG---AA--------TTCCGTGGCTGGCAT--CGCTCGCTGTAAATTGTAATCATCAAAGCGTT---TT--CTCA--GAGCCGCTTGGTGTTACTTCTTACAGTGAGTGTGCCAGTC--CGTAC--------ACA--GAAAGAAAA-----CCCCTTT---------------TGA-------------------------------A-------
droSim2 x:12305303-12305453 + dsi_358 confident CGCCGCGTTGTTTCGCTGCATGTGAGAG---AA--------TTCCGTGGCTGGCAT--CGCTCGCTGTAAATTGTAATCATCAAAGCGTT---TT--CTCA--GAGCCGCTTGGTGTTACTTCTTACAGTGAGTGTGCCAGTC--CGTAC--------ACA--GAAAGAAAA-----CCCCTTT---------------TGA-------------------------------A-------
dm3 chrX:12956074-12956231 + dme-mir-971 Known_mirbase CGCCGCGTTGTTTCGCTGCATGTGAGAG---AA--------TTCCGTGGCTGGCAT--CGCTCGCTGTAAATTGTAATCATCAAAGCGTT---TT--CTCA--GAGCCGCTTGGTGTTACTTCTTACAGTGAGTGTGCCAGTC--CGTAC--------ACA--GAAAGAAAA-----CCCCTAT---------------TGAT---------------AT-AA--------CCA-------
droEug1 scf7180000409110:1404448-1404601 + CGCCGCGTTGTTTCGCTGCATGTGAGAG---AA--------TTCCGTGGCTGGCAT--CGCTCGCTGTAAATTGTAATCATCAAAGCGTT---TT--CTCA--GAGCCGCTTGGTGTTACTTCTTACAGTGAGTGTGCCAGTC--CGTAC--------ACACAGAAAGAAAA----------TA---------------TGAA-----------------GAA--------GAA-------
droBia1 scf7180000298389:643165-643320 + CGCCGCGTTGTTTCGCTGCATGTGAGAG---AA--------TTCCGTGGCTGGCAT--CGCCCGCTGTAAATTGTAATCATCAAAGCGTT---TTT-CTCA--GAGCCGCTTGGTGTTACTTCTTACAGTGAGTGTGCCAGTC--CGTAC--------ACA--CAGAGAAAA-----CCCCTTT---------------TC-----CCC--T-G-------------------G-------
droTak1 scf7180000413998:42792-42956 + CGCCGCGTTGTTTCGCTGCATGTGAGAG---AA--------TTCCGTGGCTGGCAT--CGCTCGCTGTAAATTGTAATCATCAAAGCGTT---TT--CTCA--GAGCCGCTTGGTGTTACTTCTTACAGTGAGTGTGCCAGTC--CGTAC--------ACA--GAAAGAAAAAAATAACCCTTT---------------TG-----CC--------GAA-AAA--------GAA-------
droEle1 scf7180000490546:934510-934694 - CGCCGCGTTGTTTCGCTGCATGTGAGAG---AA--------TTCCGTGGCTGGCAT--CGCTCGCTGTAAATTGTAATCATCAAAGCGTT---TTT-CTCA--GAGCCGCTTGGTGTTACTTCTTACAGTGAGTGTGCCAGCC--CGTAC--------ACA--GAAAGAAATAAA---AACTC-ATTGAAATATCCCTT-GA--------------------ATCAATCAATATAAAGCCC
droRho1 scf7180000779914:464121-464290 - CGCCGCGTTGTTTCGCTGCATGTGAGAG---AA--------TTCCGTGGCTGGCAT--CGTTCGCTGTAAATTGTAATCATCAAAGCGTT---TTT-TTCA--GAACCGCTTGGTGTTACTTCTTACAGTGAGTGTGCCAGTC--CGTAC--------ACA--GAAAGAAAA-----CTCCCTT---------------TGAAAGCTCCTTAAGGC-----AA--------TAA-------
droFic1 scf7180000454050:893092-893264 + CGCCGCGTTGTTTCGCTGCATGTGAGAG---AA--------TTCCGTGGCTGGCAT--CGCCCGCTGTAAATTGTAATCATCAAAGCGTT---TT--CTCA--GAGCCGCTTGGTGTTACTTCTTACAGTGAGTGTGCCAGTC--CGTAC--------ACA--AAGAGAAAA-----CCCCATA---------------TGAAACCCCCTTT-G-------AA-CAACCAGTAA-------
droKik1 scf7180000302544:775466-775606 - CGCCGCGTT--------------CAGAGCGAAA--------TTCCTTGGCTGGCAG--CGCACACTGTAAATTGTAATCATCAAAGCGTT---TTT-CTCA--GAGCCGCTTGGTGTTACTTCTTACAGTGAGTGCGCCAGTACACGTAC--------ACACGGCAAGAAAG-----AACCTT--------------------------------------------------A-------
droAna3 scaffold_13117:3891768-3891909 + dan_51 confident CGCCACGTTGTTTCGCTGCATGTGAGAA---AA--------TTCCGTGGCTGGCAT--CGTTCACTGTAAATTGTAACCATCAAAGCGTT---TTTTATCA--GAGCCGCTTGGTGTTACTTCTTACAGTGAGTGAGCCAGCT--GGAGC--------ACA--TATTAAAAA---------------------------------------------------------------------
droBip1 scf7180000396383:483163-483307 - CGCCACGTTGTTTCGCTGCATGTGAGAA---AA--------TTCCGTGGCTGGCAT--CGTTCACTGTAAATTGTAACCATCAAAGCGTT---TTTTATCA--GAGCCGCTTGGTGTTACTTCTTACAGTGAGTGAGCCAGCT--GGAGCACACATTTAAC--------------------------------------TGA-------------------------------A-------
dp5 XL_group3a:1391638-1391761 - dps-mir-971 Known_mirbase CGCCGCGT---GTCTCAGCATGTGAGAG---AGCGGCTCCTTTCCCTGGACCCCAT--CGCTCGCTGTAAATTGTAATGGCCAAAGCTTT---TTTGTTGG--TAGCAGCTTGGTGTTACTTCTTACAGTGAGTGTG--------------------------------------------------------------------------------------------------------
droPer2 scaffold_52:413294-413417 + dpe_90 confident CGCCGCGT---GTCTCAGCATGTGAGAG---AGCGGCTCCTTTCCCTGGACCCCAT--CGCTCGCTGTAAATTGTAATGGCCAAAGCTTT---TTTGTTGG--TAGCAGCTTGGTGTTACTTCTTACAGTGAGTGTG--------------------------------------------------------------------------------------------------------
droWil2 scf2_1100000004909:6691507-6691611 - dwi_36 confident CGCCGCGTTATAC-------------------A--------TTAAACGGCCCAATA--CGCTCGCTGTAAATTGTAGCAATCAAAGCGTTGCCTTT---TGCCTCACAGCTTGGTGTTACTTCTTACAGTGAGTGTG--------------------------------------------------------------------------------------------------------
droVir3 scaffold_12928:4279775-4279879 - dvi-mir-971 Known_mirbase CAACACGTCACA-AGCTGA-----------------------------AATGACGTCACGCCCGCTGTAAAATGTAATCATCAGAGCGTC---CT--CTC----AACCGCTTGGTGTTACTTCTTACAGTGAGTGCGACGGCC--C-----------------------------------------------------------------------------------------------
droMoj3 scaffold_6328:350122-350197 + dmo_78 confident CGA----------------------------------------------------------CCGCTGTAAATTGTAATCATCAAAGCGTC---TG--CTA----AATCGCTTGGTGTTACTTCTTACAGTGAGCGCGGCGCTC--------------------------------------------------------------------------------------------------
droGri2 scaffold_14853:994424-994533 - dgr_60 candidate-rescued C--------------------------------------------TTGAATGACGTCACGCCCGCTGTAATATGTAATCATCAAAGCGTG---TAT-TTT----ACTCGCTTGGTGTTACTTCTTACAGTGAGTGCGACGGCC--A---C--ACGTCCAGC--GGAGGAGA----------------------------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droEre2
CGCCGCGTTGTTTCGCTGCATGTGAGAG---AA--------TTCCGTGGCTGGCAT--CGCCCGCTGTAAATTGTAATCATCAAAGCGTT---TT--CTCA--GAGCCGCTTGGTGTTACTTCTTACAGTGAGTGTGCCAGTC--CGTAC--------ACA--GAAAGAAAA-----CCCCTT------------------------CCTTT-GGTACAT-AA--------CAA-------SizeHit CountTotal NormTotalM055

Female-body		M057

Embryo		V060

Head		V040

Embryo		V107

Male-body		V108

Head		GSM1528801

follicle cells
..............................................................................................................TTGGTGTTACTTCTTACAGTGA.............................................................................................................221231.0023139451661790
...............................................................GCTGTAAATTGTAATCATCA..............................................................................................................................................................20145.004500601380
...............................................................GCTGTAAATTGTAATCATCAAAGC..........................................................................................................................................................24129.0029112011140
...............................................................GCTGTAAATTGTAATCATCAAAG...........................................................................................................................................................23126.002601210220
...............................................................GCTGTAAATTGTAATCATCAA.............................................................................................................................................................21122.002200000220
...............................................................GCTGTAAATTGTAATCATCAAA............................................................................................................................................................22122.002210000210
..............................................................................................................TTGGTGTTACTTCTTACAGTG..............................................................................................................21115.00152405040
...............................................................................................................TGGTGTTACTTCTTACAGTGA.............................................................................................................2115.0055000000
.............................................................................................................CTTGGTGTTACTTCTTACAGTGA.............................................................................................................2315.0050400010
..............................................................................................................TTGGTGTTACTTCTTACAGTGT.............................................................................................................2212.0020011000
..............................................................................................................TTGGTGTTACTTCTTACAGTGAA............................................................................................................2312.0020000020
..............................................................................................................TTGGTGTTACTTCTTACAGT...............................................................................................................2012.0020000020
................................................................CTGTAAATTGTAATCATCAAAG...........................................................................................................................................................2212.0022000000
...............................................................GCTGTAAATTGTAATCATCAAAGCG.........................................................................................................................................................2512.0020000020
..............................................................................................................TTGGTGTTACTTCTTACAGTGC.............................................................................................................2212.0020011000
...............................................................GCTGTAAATTGTAATCAT................................................................................................................................................................1812.0020000020
...............................................................GCTGTAAATTGTAATCATCAAAA...........................................................................................................................................................2311.0010000010
..............................................................................................................TTGGTGTTACTTCTTACAGTGTA............................................................................................................2311.0010001000
..............................................................CGCTGTAAATTGTAATCATCA..............................................................................................................................................................2111.0010000010
...............................................................GCTGTAAATTGTAATCATC...............................................................................................................................................................1911.0010000010
...............................................................GCTGTAAATTGTAATCATCG..............................................................................................................................................................2011.0010000010
..............................................................CGCTGTAAATTGTAATCATCAAAG...........................................................................................................................................................2411.0010000010
.........................................TTCCGTGGCTGGCAT--CGCCC..................................................................................................................................................................................2011.0011000000
..............................................................................................................TTGGTGTTACTTCTTACAGTGAC............................................................................................................2311.0010100000
...............................AA--------TTCCGTGGCTGGCAT--CGCCC..................................................................................................................................................................................2211.0010000010
.............................................................................................................CTTGGTGTTACTTCTTACAGTG..............................................................................................................2211.0011000000
..................................................................................................................TGTTACTTCTTACAGTGA.............................................................................................................1811.0010001000
..........................................................................................................................................CAGTC--CGTAC--------ACA--GAAAGAAAA-----................................................................2211.0010000010
droYak3
CGCCGCGTTGTTTCGCTGCATGTGAGAG---AA--------TTCCGTGGCTGGCAT--CGCTCGCTGTAAATTGTAATCATCAAAGCGTT---TT--CTCA--GAGCCGCTTGGTGTTACTTCTTACAGTGAGTGTGCCAGTC--CGTAC--------ACA--GAAAGAAAA-----ACCCCTT---------------T-----------------------------------------SizeHit CountTotal NormTotalM026

Head		M043

Female-body		M056

Embryo		V046

Embryo		V052

Head		V058

Head		V120

Male-body		SRR1275488

Male larvae		SRR1275486

Male prepupae		SRR1275484

Male prepupae		GSM1528802

follicle cells
..............................................................................................................TTGGTGTTACTTCTTACAGTGA.............................................................................................................221227.002271111138630220000
...............................................................GCTGTAAATTGTAATCATCAAAGC..........................................................................................................................................................24169.00692813901000000
...............................................................GCTGTAAATTGTAATCATCAAAG...........................................................................................................................................................23136.0036292410000000
...............................................................GCTGTAAATTGTAATCATCA..............................................................................................................................................................20110.001001005400000
.........................................TTCCGTGGCTGGCAT--CGCTC..................................................................................................................................................................................20110.001090100000000
................................A--------TTCCGTGGCTGGCAT--CGCTC..................................................................................................................................................................................2116.00650100000000
..............................................................................................................TTGGTGTTACTTCTTACAG................................................................................................................1916.00600600000000
...............................................................GCTGTAAATTGTAATCATC...............................................................................................................................................................1914.00431000000000
..............................................................................................................TTGGTGTTACTTCTTACAGTG..............................................................................................................2114.00400400000000
..............................................................................................................TTGGTGTTACTTCTTACAGTGAA............................................................................................................2314.00411110000000
...............................................................................................................TGGTGTTACTTCTTACAGTGA.............................................................................................................2114.00404000000000
.............................................................................................................CTTGGTGTTACTTCTTACAGTGA.............................................................................................................2313.00300210000000
..............................................................................................................TTGGTGTTACTTCTTACAGTGG.............................................................................................................2212.00210010000000
...............................................................GCTGTAAATTGTAATCATCAAAGCG.........................................................................................................................................................2512.00210010000000
...............................................................GCTGTAAATTGTAATCATCAA.............................................................................................................................................................2111.00100000100000
..........................................TCCGTGGCTGGCAT--CGCTC..................................................................................................................................................................................1911.00110000000000
...............................................................................................................TGGTGTTACTTCTTACAGTG..............................................................................................................2011.00100100000000
droSec2
CGCCGCGTTGTTTCGCTGCATGTGAGAG---AA--------TTCCGTGGCTGGCAT--CGCTCGCTGTAAATTGTAATCATCAAAGCGTT---TT--CTCA--GAGCCGCTTGGTGTTACTTCTTACAGTGAGTGTGCCAGTC--CGTAC--------ACA--GAAAGAAAA-----CCCCTTT---------------TGA-------------------------------A-------SizeHit CountTotal NormTotalM054

Female-body		V113

Male-body		V114

Embryo		V115

Head
..............................................................................................................TTGGTGTTACTTCTTACAGTGA.............................................................................................................221177.001776012645
...............................................................GCTGTAAATTGTAATCATCA..............................................................................................................................................................20128.002811125
...............................................................GCTGTAAATTGTAATCATCAA.............................................................................................................................................................21112.001200012
...............................................................GCTGTAAATTGTAATCATCAAA............................................................................................................................................................2217.0070007
..............................................................................................................TTGGTGTTACTTCTTACAGTG..............................................................................................................2116.0060051
...............................................................GCTGTAAATTGTAATCATC...............................................................................................................................................................1915.0050005
.............................................................................................................CTTGGTGTTACTTCTTACAGTGA.............................................................................................................2315.0050050
...............................................................GCTGTAAATTGTAATCATCAAAGC..........................................................................................................................................................2415.0051013
...............................................................GCTGTAAATTGTAATCATCAAAG...........................................................................................................................................................2313.0031002
..............................................................................................................TTGGTGTTACTTCTTACAGTGT.............................................................................................................2212.0020020
.........................................TTCCGTGGCTGGCAT--CGCTC..................................................................................................................................................................................2011.0010010
..............................................................CGCTGTAAATTGTAATCATCAA.............................................................................................................................................................2211.0010001
...............................................................GCTGTAAATTGTAATCATCAAAGCG.........................................................................................................................................................2511.0010010
.............................................................................................................CTTGGTGTTACTTCTTACAGTG..............................................................................................................2211.0010010
...............................................................................................................TGGTGTTACTTCTTACAGTGA.............................................................................................................2111.0011000
..............................................................................................................TTGGTGTTACTTCTTACAGT...............................................................................................................2011.0010001
..............................................................................................................TTGGTGTTACTTCTTACAGTGG.............................................................................................................2211.0010010
.................................................................................CAAAGCGTT---TT--CTCA--GGC.......................................................................................................................................1880.1311000
droSim2
CGCCGCGTTGTTTCGCTGCATGTGAGAG---AA--------TTCCGTGGCTGGCAT--CGCTCGCTGTAAATTGTAATCATCAAAGCGTT---TT--CTCA--GAGCCGCTTGGTGTTACTTCTTACAGTGAGTGTGCCAGTC--CGTAC--------ACA--GAAAGAAAA-----CCCCTTT---------------TGA-------------------------------A-------SizeHit CountTotal NormTotalM023

Head		M024

Male-body		M025

Embryo		M053

Female-body		O001

Testis		O002

Head		SRR553485

Ovary		SRR553486

Ovary		SRR553487

Ovary		SRR553488

Ovary		SRR618934

Ovary		V044

Embryo		SRR902008

Ovary		SRR902009

Testis		SRR1275487

Male larvae		SRR1275485

Male prepupae		SRR1275483

Male prepupae
..............................................................................................................TTGGTGTTACTTCTTACAGTGA.............................................................................................................221285.0028552062700001813013300000
...............................................................GCTGTAAATTGTAATCATCAAAGC..........................................................................................................................................................24196.00966113300000010000000
...............................................................GCTGTAAATTGTAATCATCAAAG...........................................................................................................................................................23190.00907611300000000000000
..............................................................................................................TTGGTGTTACTTCTTACAGTGG.............................................................................................................22126.0026901600000000100000
.........................................TTCCGTGGCTGGCAT--CGCTC..................................................................................................................................................................................20116.0016160000000000000000
...............................................................GCTGTAAATTGTAATCATC...............................................................................................................................................................19116.0016160000000000000000
..............................................................................................................TTGGTGTTACTTCTTACAGTG..............................................................................................................2115.00500000000000500000
................................A--------TTCCGTGGCTGGCAT--CGCTC..................................................................................................................................................................................2114.00430100000000000000
..................................................................................................................TGTTACTTCTTACAGTGA.............................................................................................................1812.00200000000110000000
..............................................................................................................TTGGTGTTACTTCTTACAG................................................................................................................1912.00210100000000000000
...............................................................GCTGTAAATTGTAATCATCAAAGA..........................................................................................................................................................2411.00100000000010000000
..............................................................................................................TTGGTGTTACTTCTTACAGTGAA............................................................................................................2311.00100100000000000000
...............................................................GCTGTAAATTGTAATCATCAAA............................................................................................................................................................2211.00100000000010000000
...............................AA--------TTCCGTGGCTGGCAT--CGCTC..................................................................................................................................................................................2211.00110000000000000000
dm3
CGCCGCGTTGTTTCGCTGCATGTGAGAG---AA--------TTCCGTGGCTGGCAT--CGCTCGCTGTAAATTGTAATCATCAAAGCGTT---TT--CTCA--GAGCCGCTTGGTGTTACTTCTTACAGTGAGTGTGCCAGTC--CGTAC--------ACA--GAAAGAAAA-----CCCCTAT---------------TGAT---------------AT-AA--------CCA-------SizeHit CountTotal NormTotalGSM154618

Ovary		GSM154620

Ovary		GSM154621

Ovary		GSM154622

Ovary		GSM180328

Head		GSM180329

Mixed-body		GSM180330

Embryo		GSM180331

Embryo		GSM180332

Embryo		GSM180333

Embryo		GSM180334

Larvae		GSM180335

Disc		GSM180336

Pupae		GSM180337

S2		GSM239041

Head		GSM239050

Head		GSM239051

S2		GSM239052

S2		GSM246084

Head		GSM266765

S2		GSM280082

Ovary		GSM280083

Ovary		GSM280084

Ovary		GSM280085

Testis		GSM280086

Ovary		GSM280087

S2-NP		GSM280088

S2-NP		GSM312995

Head		GSM313160

Head		GSM313161

Head		GSM313162

Head		GSM313163

Head		GSM313164

Head		GSM313165

Head		GSM343287

Embryo		GSM379050

Ovary		GSM379051

Ovary		GSM379052

Ovary		GSM379053

Ovary		GSM379054

Ovary		GSM379055

Ovary		GSM379056

Ovary		GSM379057

Ovary		GSM379058

Ovary		GSM379059

Ovary		GSM379060

Ovary		GSM379061

Ovary		GSM379062

Ovary		GSM379063

Ovary		GSM379064

Ovary		GSM379065

Ovary		GSM379066

Ovary		GSM379067

Ovary		GSM424739

S2		GSM424740

S2		GSM424741

S2		GSM467729

Female-body		GSM467730

Female-body		GSM467731

Female-body		M002

CS		M003

Male-body		M004

Male-body		M005

ML-DmD32		M006

ML-DmD32		M029

OSC		M030

OSC		M031

OSC		M032

S2-R+		M033

S2-R+		M034

S2-R+		M035

S2-R+		M036

S2-R+		M037

S2-R+		M038

S2-R+		M039

S2-R+		M048

S2-R+		OSS2

OSS		OSS6

OSS		OSS7

OSS		OSS8

OSS		S1

Head		S10

Embryo		S11

Embryo		S12

Embryo		S13

Embryo		S14

Embryo		S15

S2-GMR		S16

Kc		S17

Larvae		S18

Larvae		S19

Pupae		S2

Head		S20

Pupae		S21

Disc		S22

Head		S23

Female-body		S24

Male-body		S25

Larvae		S26

Larvae		S27

Pupae		S28

Pupae		S29

Head		S3

Male-body		S30

S2-GMR		S31

S2		S32

S2		S33

Kc		S34

Kc		S35

Kc		S4

Female-body		S5

Disc		S6

Embryo		S7

Embryo		S8

S2		S9

Embryo		SRR001337

Head		SRR001338

Head		SRR001339

Head		SRR001340

Head		SRR001341

Head		SRR001342

Head		SRR001343

Head		SRR001344

Head		SRR001345

Head		SRR001346

Head		SRR001347

Head		SRR001348

Head		SRR001349

Head		SRR001664

Head		SRR010951

Ovary		SRR010952

Ovary		SRR010953

Ovary		SRR010954

Ovary		SRR010955

Ovary		SRR010956

Ovary		SRR010957

Ovary		SRR010958

Ovary		SRR010959

Ovary		SRR010960

Ovary		SRR014268

Embryo		SRR014269

Embryo		SRR014270

Embryo		SRR014271

Embryo		SRR014272

Embryo		SRR014273

Ovary		SRR014274

Ovary		SRR014275

Ovary		SRR014276

Ovary		SRR014277

Ovary		SRR014278

Ovary		SRR014279

Ovary		SRR014280

Ovary		SRR014281

Ovary		SRR014282

Ovary		SRR023197

S2		SRR023399

S2		SRR023400

S2		SRR023402

S2		SRR023407

S2		SRR029028

S2		SRR029029

S2		SRR029030

S2		SRR029031

S2		SRR029032

S2		SRR029033

S2		SRR029608

Head		SRR029633

Head		SRR030145

gb3		SRR031692

Head		SRR031693

Head		SRR031694

Head		SRR031696

Head		SRR031697

Head		SRR031698

Head		SRR031699

Head		SRR031700

Head		SRR031701

Head		SRR031702

Head		SRR031703

Head		SRR031704

Head		SRR032092

S2		SRR032093

S2		SRR032094

S2		SRR032095

S2-NP		SRR032096

S2-NP		SRR032152

Head		SRR060643

Testis		SRR060644

Ovary		SRR060645

Testis		SRR060646

Ovary		SRR060647

Ovary		SRR060648

Ovary		SRR060649

Ovary		SRR060650

Testis		SRR060651

Ovary		SRR060652

Testis		SRR060653

Ovary		SRR065151

Ovary		SRR065152

Ovary		SRR065153

Ovary		SRR065154

Ovary		SRR065155

Ovary		SRR065800

Ovary		SRR065801

Ovary		SRR065802

Ovary		SRR065803

Ovary		SRR065804

Ovary		SRR065805

Ovary		SRR065806

Ovary		SRR065807

Ovary		SRR097865

S2-NP		SRR097866

S2-NP		SRR097867

S2-NP		SRR298536

Ovary		SRR298537

Ovary		SRR298711

Ovary		SRR298712

Ovary		SRR317110

Ovary		SRR317111

Ovary		SRR317112

Ovary		SRR317113

Ovary		SRR317114

Ovary		SRR317115

Ovary		SRR317116

Ovary		SRR317117

Ovary		SRR341115

S2		SRR341116

S2		SRR341117

S2		SRR341118

S2		SRR351332

Mixed-body		SRR351333

Mixed-body		T004

OSC		T005

CME-L1		V001

Embryo		V002

Embryo		V003

S2		V006

Female-body		V007

Head		V008

S2		V009

CME-L1		V010

ML-DmD20-C5		V011

Sg4		V012

Male-body		V013

Head		V014

DTT		V015

DreRFHV		V018

Kc167		V019

GM2		V020

S2-R+		V021

ML-DmD21		V022

ML-DmD32		V023

Head		V024

Kc167		V025

S2-R+		V026

1182-2H		V027

ML-DmD21		V028

CME-W1-Cl.8+		V029

ML-DmD9		V030

ML-DmD8		V031

GM2		V032

S1		V033

CME-W1-Cl.8+		V034

ML-DmD16-C3		V035

ML-DmD32		V036

ML-DmD20-C5		V037

S2		V038

S2		V063

Ovary		V0632

Ovary		V064

Ovary		V0642

Ovary		V065

Ovary		V0652

Ovary		V066

Ovary		V0662

Ovary		V067

S2-NP		V073

mbn2		V074

S3		V075

ML-DmBG1-C1		V076

ML-DmBG3-C2		V077

Head		V078

Head		V079

Head		V080

Head		V081

Embryo		V082

Embryo		V083

Male-body		V084

Female-body		V085

CME-W2		V086

Female-body		V088

Ovary		V0882

Ovary		V089

Ovary		V0892

Ovary		V090

Male-body		V091

fGS/OSS		V092

Male-body		V093

Male-body		V094

S2-R+		V095

S2-R+		V096

Ovary		V097

Ovary		V098

Ovary		V125

ML-DmD9		V126

CME-L1		V127

G2		V128

S3		V129

ML-DmBG1-C1		V130

ML-DmBG3-C2		V131

ML-DmD16-C3		V132

ML-DmD32		V133

Sg4		V134

ML-DmD8		V135

CME-W2		V136

Male-body		V137

Head		V138

Male-body		V139

Female-body		V140

Female-body		V141

Female-body		V142

Female-body		V144

OSC		V145

S2		V146

S1		V147

1182-2H		V148

mbn2		GSM1528798

follicle cells
..............................................................................................................TTGGTGTTACTTCTTACAGTGA.............................................................................................................2214185.004185000018000018591010108000028000015117103000000000000000010100000111140000000000000000000012591111028107276724181817751021516358410644051520852239299504902744169148243590000000000000000000000000000000000009313201562011913261321168625930000004070000000000000000000000000001000016032402610010000221703140000280300011650030000071010000000001003001111363714011100100600330100001200004000284319100075120
...............................................................GCTGTAAATTGTAATCATCA..............................................................................................................................................................201359.003590000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000050000011031810000000000000000000000000000000000000152801600317020131031500000180000000000000000000000000000000000000000000000000003000023020000000000000000000000000000000000252244380000000000001000000000000000000100010001000
...............................................................GCTGTAAATTGTAATCATCAAAGC..........................................................................................................................................................241280.0028000001000000000000000000000000018210100000000000000000000000000000000000000000000000000000000010060010001600000100101000130101220518300000000000000000000000000000000000012210130042601801823710000009000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000100022220300000000000000000000000000001100000000000
...............................................................GCTGTAAATTGTAATCATCAAAG...........................................................................................................................................................231229.002290000000000000000000000000000118140000000000000000000000000000000000000000000000000000000000010000000001000000000000001000022704293000000000000000000010000000000000000111204006151813023860000014000000000000000000000000000000000000000000000000000200003101000001000000000000000000000000000016150201000000000000000000000000000000000000000
...............................................................GCTGTAAATTGTAATCATCAA.............................................................................................................................................................211174.0017400000000000000000000000000010000000000000000000000000000000000000000000000000000000000000001000000000250000000000000020000000021730000000000000000000000000000000000001110013016806013020000000150000000000000000000000000000000000000000000000000000000010010000030000000000000000000000000000184100010000000000000000000000000000000000000000
..............................................................................................................TTGGTGTTACTTCTTACAGTG..............................................................................................................211163.001630000000000000000001000050000000000000100000000000000000013100000000000000000000010000006000201830220130200020001020300200000102022000000000000000000000000000000000000130000230105054000009000000000000000000000000000000000000000000000003100000000000000100001000009000000000000000000012010300000000000000000002000000000700100004520
...............................................................GCTGTAAATTGTAATCATCAAA............................................................................................................................................................22178.00780000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100020210000000000000000000000000000000000009907001515170140000002000000000000000000000000000000000000000000000000000000001000000001000000000000000000000000000013310000000000000000000000000000000000000000000
...............................................................GCTGTAAATTGTAATCATC...............................................................................................................................................................19173.007300000000000000000000000000003110000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000131100000000000000000000000000000000000022000000113803100000000000000000000000000000000000000000000000000000000030000010000000000000000000000000000000000009310110000000000000000000000000000000200000000000
..............................................................................................................TTGGTGTTACTTCTTACAGTGT.............................................................................................................22146.0046000000000000000000000000000000000000000000000000000000000000000000000000000000002000010000090010001000000000000000000100000001052000000000000000000000000000000000000010100020000000000001000000000000000000000000000000000000000000000001000100001000000000001000001000000000000010100000010100000000100000000001000000000400000001110
..............................................................................................................TTGGTGTTACTTCTTACAGTGC.............................................................................................................22134.0034000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000030000000000000000000003800000104183000000000000000000000000000000000000100100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................TTGGTGTTACTTCTTACAGTGAA............................................................................................................23128.0028000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010130010008000000001000000000000000000000000000000000000000000000000000000010000210101000000002000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000010000000000000000000000000000000200000000000
.............................................................................................................CTTGGTGTTACTTCTTACAGTGA.............................................................................................................23126.0026000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000001100000000000000000001000500000000000000000000000000000000000000000010100010201020000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020100300000000001000000000000000000000000000100
...............................................................GCTGTAAATTGTAATCAT................................................................................................................................................................18116.0016000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000112000000000000000000000000000000000000020100000102100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000130000000000000000000000000000000000000000000
..............................................................................................................TTGGTGTTACTTCTTACAGTGAT............................................................................................................23110.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000040000000000010000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000001000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000200
..................................................................................................................TGTTACTTCTTACAGTGA.............................................................................................................1819.009000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000010100000001000000004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................TGGTGTTACTTCTTACAGTGA.............................................................................................................2118.008000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000010000000000000000000000000001011000000000000000000000000000000000000110000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................TTGGTGTTACTTCTTACAGTGG.............................................................................................................2218.008000000000000000000000001000000000000000000000000000000000000000000000000000000001000000000010000000000000000000010000100000000000000000000000000000000000000000000000100000000000010000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................TTGGTGTTACTTCTTACAGTGAG............................................................................................................2315.005000000000000000000000000000000000000000000000000000000003110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................GCTGTAAATTGTAATCATCAAAGA..........................................................................................................................................................2415.005000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010110020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................TTGGTGTTACTTCTTACA.................................................................................................................1815.005000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000001000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................CTTGGTGTTACTTCTTACAGTGT.............................................................................................................2314.004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000010000000000000000
...............................................................GCTGTAAATTGTAATCATCAAAGG..........................................................................................................................................................2414.004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010101010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................TTGGTGTTACTTCTTACAGT...............................................................................................................2014.004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000100000000010
...............................................................GCTGTAAATTGTAATCATCAAAGCG.........................................................................................................................................................2514.004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011000000000000000000000000000000000000000000000
droEug1
CGCCGCGTTGTTTCGCTGCATGTGAGAG---AA--------TTCCGTGGCTGGCAT--CGCTCGCTGTAAATTGTAATCATCAAAGCGTT---TT--CTCA--GAGCCGCTTGGTGTTACTTCTTACAGTGAGTGTGCCAGTC--CGTAC--------ACACAGAAAGAAAA----------TA---------------TGAA-----------------GAA--------GAA-------SizeHit CountTotal NormTotal
No Reads
droBia1
CGCCGCGTTGTTTCGCTGCATGTGAGAG---AA--------TTCCGTGGCTGGCAT--CGCCCGCTGTAAATTGTAATCATCAAAGCGTT---TTT-CTCA--GAGCCGCTTGGTGTTACTTCTTACAGTGAGTGTGCCAGTC--CGTAC--------ACA--CAGAGAAAA-----CCCCTTT---------------TC-----CCC--T-G-------------------G-------SizeHit CountTotal NormTotal
No Reads
droTak1
CGCCGCGTTGTTTCGCTGCATGTGAGAG---AA--------TTCCGTGGCTGGCAT--CGCTCGCTGTAAATTGTAATCATCAAAGCGTT---TT--CTCA--GAGCCGCTTGGTGTTACTTCTTACAGTGAGTGTGCCAGTC--CGTAC--------ACA--GAAAGAAAAAAATAACCCTTT---------------TG-----CC--------GAA-AAA--------GAA-------SizeHit CountTotal NormTotal
No Reads
droEle1
CGCCGCGTTGTTTCGCTGCATGTGAGAG---AA--------TTCCGTGGCTGGCAT--CGCTCGCTGTAAATTGTAATCATCAAAGCGTT---TTT-CTCA--GAGCCGCTTGGTGTTACTTCTTACAGTGAGTGTGCCAGCC--CGTAC--------ACA--GAAAGAAATAAA---AACTC-ATTGAAATATCCCTT-GA--------------------ATCAATCAATATAAAGCCCSizeHit CountTotal NormTotal
No Reads
droRho1
CGCCGCGTTGTTTCGCTGCATGTGAGAG---AA--------TTCCGTGGCTGGCAT--CGTTCGCTGTAAATTGTAATCATCAAAGCGTT---TTT-TTCA--GAACCGCTTGGTGTTACTTCTTACAGTGAGTGTGCCAGTC--CGTAC--------ACA--GAAAGAAAA-----CTCCCTT---------------TGAAAGCTCCTTAAGGC-----AA--------TAA-------SizeHit CountTotal NormTotal
No Reads
droFic1
CGCCGCGTTGTTTCGCTGCATGTGAGAG---AA--------TTCCGTGGCTGGCAT--CGCCCGCTGTAAATTGTAATCATCAAAGCGTT---TT--CTCA--GAGCCGCTTGGTGTTACTTCTTACAGTGAGTGTGCCAGTC--CGTAC--------ACA--AAGAGAAAA-----CCCCATA---------------TGAAACCCCCTTT-G-------AA-CAACCAGTAA-------SizeHit CountTotal NormTotal
No Reads
droKik1
CGCCGCGTT--------------CAGAGCGAAA--------TTCCTTGGCTGGCAG--CGCACACTGTAAATTGTAATCATCAAAGCGTT---TTT-CTCA--GAGCCGCTTGGTGTTACTTCTTACAGTGAGTGCGCCAGTACACGTAC--------ACACGGCAAGAAAG-----AACCTT--------------------------------------------------A-------SizeHit CountTotal NormTotal
No Reads
droAna3
CGCCACGTTGTTTCGCTGCATGTGAGAA---AA--------TTCCGTGGCTGGCAT--CGTTCACTGTAAATTGTAACCATCAAAGCGTT---TTTTATCA--GAGCCGCTTGGTGTTACTTCTTACAGTGAGTGAGCCAGCT--GGAGC--------ACA--TATTAAAAA---------------------------------------------------------------------SizeHit CountTotal NormTotalM044

Female-body		M058

Embryo		V039

Embryo		V055

Head		V105

Male-body		V106

Head
..............................................................................................................TTGGTGTTACTTCTTACAGTGA.............................................................................................................221223.00223187812104101
...............................................................ACTGTAAATTGTAACCATCAAAGC..........................................................................................................................................................24129.002911501012
..............................................................................................................TTGGTGTTACTTCTTACAGTG..............................................................................................................21126.00261311119
...............................................................ACTGTAAATTGTAACCATCAAAG...........................................................................................................................................................2316.006010005
...............................................................................................................TGGTGTTACTTCTTACAGTGA.............................................................................................................2115.005400001
...............................................................ACTGTAAATTGTAACCATCA..............................................................................................................................................................2014.004100003
..............................................................................................................TTGGTGTTACTTCTTACAGTGAA............................................................................................................2313.003120000
.............................................................................................................CTTGGTGTTACTTCTTACAGTGA.............................................................................................................2313.003030000
..............................................................................................................TTGGTGTTACTTCTTACAGTGAAA...........................................................................................................2413.003020001
...............................................................ACTGTAAATTGTAACCATCAAA............................................................................................................................................................2213.003000003
.............................................................................................................CTTGGTGTTACTTCTTACAGTG..............................................................................................................2213.003001101
..............................................................................................................TTGGTGTTACTTCTTACAGTGC.............................................................................................................2212.002011000
.......................................................................................GTT---TTTTATCA--GAGCCGC...................................................................................................................................1812.002020000
..............................................................................................................TTGGTGTTACTTCTTACAGT...............................................................................................................2012.002000101
.............................................................................................................CTTGGTGTTACTTCTTACAGTGT.............................................................................................................2311.001000001
...............................................................ACTGTAAATTGTAACCATCAA.............................................................................................................................................................2111.001000001
...............................................................ACTGTAAATTGTAACCATCAAAGT..........................................................................................................................................................2411.001000001
..............................................................................................................TTGGTGTTACTTCTTACAGTA..............................................................................................................2111.001001000
..............................................................................................................TTGGTGTTACTTCTTACAGTGT.............................................................................................................2211.001000001
..............................................................................................................TTGGTGTTACTTCTTACAG................................................................................................................1911.001100000
...............................................................ACTGTAAATTGTAACCATCAAAGCT.........................................................................................................................................................2511.001000001
droBip1
CGCCACGTTGTTTCGCTGCATGTGAGAA---AA--------TTCCGTGGCTGGCAT--CGTTCACTGTAAATTGTAACCATCAAAGCGTT---TTTTATCA--GAGCCGCTTGGTGTTACTTCTTACAGTGAGTGAGCCAGCT--GGAGCACACATTTAAC--------------------------------------TGA-------------------------------A-------SizeHit CountTotal NormTotal
No Reads
dp5
CGCCGCGT---GTCTCAGCATGTGAGAG---AGCGGCTCCTTTCCCTGGACCCCAT--CGCTCGCTGTAAATTGTAATGGCCAAAGCTTT---TTTGTTGG--TAGCAGCTTGGTGTTACTTCTTACAGTGAGTGTG--------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM022

Male-body		M040

Female-body		M059

Embryo		M062

Head		V043

Embryo		V051

Head		V112

Male-body		SRR902010

Ovary		SRR902011

Testis		SRR902012

CNS imaginal disc
..............................................................................................................TTGGTGTTACTTCTTACAGTGA.............................................................................................................221538.00538020311864109355004
...............................................................GCTGTAAATTGTAATGGCCAAAGC..........................................................................................................................................................24170.00700818301040000
.............................................................................................................CTTGGTGTTACTTCTTACAGTGA.............................................................................................................23142.004204255620000
..............................................................................................................TTGGTGTTACTTCTTACAGTG..............................................................................................................21124.002401041261000
...............................................................GCTGTAAATTGTAATGGCCAAAGCT.........................................................................................................................................................25114.00140247100000
...............................................................GCTGTAAATTGTAATGGCCAAAG...........................................................................................................................................................23112.00120700050000
..............................................................................................................TTGGTGTTACTTCTTACAGTGT.............................................................................................................22111.00110000380000
...............................................................................................................TGGTGTTACTTCTTACAGTGA.............................................................................................................21110.001001000000000
...............................................................GCTGTAAATTGTAATGGCCA..............................................................................................................................................................2018.0080400040000
...............................................................GCTGTAAATTGTAATGGCCAAA............................................................................................................................................................2217.0070001050001
..............................................................................................................TTGGTGTTACTTCTTACAGTGAA............................................................................................................2316.0060301000002
..............................................................................................................TTGGTGTTACTTCTTACAG................................................................................................................1914.0040021010000
...............................................................GCTGTAAATTGTAATGGCCAA.............................................................................................................................................................2114.0040101020000
.............................................................................................................CTTGGTGTTACTTCTTACAGTG..............................................................................................................2213.0030110100000
...............................................................GCTGTAAATTGTAATGGCCAAAGCC.........................................................................................................................................................2512.0020002000000
..................................................................................................................TGTTACTTCTTACAGTGA.............................................................................................................1812.0020100100000
..........................................TCCCTGGACCCCAT--CGCTC..................................................................................................................................................................................1912.0020002000000
..............................................................................................................TTGGTGTTACTTCTTACAGTGAAA...........................................................................................................2411.0010100000000
.............................................................................................................CTTGGTGTTACTTCTTACAGC...............................................................................................................2111.0010001000000
.............................................................................................................CTTGGTGTTACTTCTTACAG................................................................................................................2011.0010010000000
................................................................CTGTAAATTGTAATGGCCAAAGCT.........................................................................................................................................................2411.0010000010000
..............................................................................................................TTGGTGTTACTTCTTACAGTGC.............................................................................................................2211.0010000010000
................................................................CTGTAAATTGTAATGGCCAAAGA..........................................................................................................................................................2311.0010100000000
...............................................................................................................TGGTGTTACTTCTTACAGTG..............................................................................................................2011.0010100000000
........................................TTTCCCTGGACCCCAT--CGCTC..................................................................................................................................................................................2111.0010001000000
................................................................................................................GGTGTTACTTCTTACAGTGA.............................................................................................................2011.0010100000000
..............................................................................................................TTGGTGTTACTTCTTACAGTGG.............................................................................................................2211.0010010000000
.............................................................................................................CTTGGTGTTACTTCTTACAGT...............................................................................................................2111.0010000100000
..............................................................................................................TTGGTGTTACTTCTTACAGT...............................................................................................................2011.0010000100000
.................................................................TGTAAATTGTAATGGCCAAAGCT.........................................................................................................................................................2311.0010001000000
.......................................................................................TTT---TTTGTTGG--TAGCAGC...................................................................................................................................1821.0020020000000
..............................................................................................................TTGGTGTTACTTCTTACAC................................................................................................................1911.0010010000000
droPer2
CGCCGCGT---GTCTCAGCATGTGAGAG---AGCGGCTCCTTTCCCTGGACCCCAT--CGCTCGCTGTAAATTGTAATGGCCAAAGCTTT---TTTGTTGG--TAGCAGCTTGGTGTTACTTCTTACAGTGAGTGTG--------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM021

Embryo		M042

Female-body		V042

Embryo		V050

Head		V057

Head		V111

Male-body
..............................................................................................................TTGGTGTTACTTCTTACAGTGA.............................................................................................................221192.0019224234653424
..............................................................................................................TTGGTGTTACTTCTTACAGTG..............................................................................................................21119.0019024931
...............................................................GCTGTAAATTGTAATGGCCAAAG...........................................................................................................................................................2319.009000540
...............................................................GCTGTAAATTGTAATGGCCAAAGCT.........................................................................................................................................................2519.009001260
...............................................................GCTGTAAATTGTAATGGCCA..............................................................................................................................................................2018.008020240
...............................................................GCTGTAAATTGTAATGGCCAAA............................................................................................................................................................2217.007000340
.............................................................................................................CTTGGTGTTACTTCTTACAGTGA.............................................................................................................2316.006011310
..............................................................................................................TTGGTGTTACTTCTTACAGTGG.............................................................................................................2215.005500000
..............................................................................................................TTGGTGTTACTTCTTACAGTGT.............................................................................................................2215.005000230
...............................................................GCTGTAAATTGTAATGGCCAA.............................................................................................................................................................2114.004010030
.........................................TTCCCTGGACCCCAT--CGCTC..................................................................................................................................................................................2014.004000220
.............................................................................................................CTTGGTGTTACTTCTTACAGTG..............................................................................................................2213.003000201
.......................................................................................TTT---TTTGTTGG--TAGCAGC...................................................................................................................................1823.006300030
.................................................................TGTAAATTGTAATGGCCAAAGCT.........................................................................................................................................................2313.003000120
...............................................................................................................TGGTGTTACTTCTTACAGTGA.............................................................................................................2113.003020100
.............................................................................................................CTTGGTGTTACTTCTTACAGT...............................................................................................................2113.003100110
...............................................................GCTGTAAATTGTAATGGCCAAAT...........................................................................................................................................................2312.002000020
...............................................................GCTGTAAATTGTAATGGCCAAAGC..........................................................................................................................................................2412.002020000
..........................................TCCCTGGACCCCAT--CGCTC..................................................................................................................................................................................1911.001000010
..............................................................................................................TTGGTGTTACTTCTTACAGTGAA............................................................................................................2311.001000010
...............................................................GCTGTAAATTGTAATGGCCAAT............................................................................................................................................................2211.001000001
..............................................................................................................TTGGTGTTACTTCTTACAGT...............................................................................................................2011.001000010
..............................................................................................................TTGGTGTTACTTCTTACA.................................................................................................................1811.001010000
.............................................................................................................CTTGGTGTTACTTCTTACAGTGT.............................................................................................................2311.001001000
...............................................................GCTGTAAATTGTAATGGCC...............................................................................................................................................................1911.001000010
droWil2
CGCCGCGTTATAC-------------------A--------TTAAACGGCCCAATA--CGCTCGCTGTAAATTGTAGCAATCAAAGCGTTGCCTTT---TGCCTCACAGCTTGGTGTTACTTCTTACAGTGAGTGTG--------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM020

Head		M045

Female-body		V117

Male-body		V118

Embryo		V119

Head
..............................................................................................................TTGGTGTTACTTCTTACAGTGA.............................................................................................................2214923.00492343116785403777
..............................................................................................................TTGGTGTTACTTCTTACAGTG..............................................................................................................211449.00449139028399
..............................................................................................................TTGGTGTTACTTCTTACAGTGT.............................................................................................................221118.001180107110
..............................................................................................................TTGGTGTTACTTCTTACAGTGG.............................................................................................................22182.0082780022
..............................................................................................................TTGGTGTTACTTCTTACAGT...............................................................................................................20174.0074331166
...............................................................GCTGTAAATTGTAGCAATCAAAGC..........................................................................................................................................................24172.00725200128
...............................................................................................................TGGTGTTACTTCTTACAGTGA.............................................................................................................21122.0022015007
..............................................................................................................TTGGTGTTACTTCTTACAGTGAA............................................................................................................23120.0020010118
.............................................................................................................CTTGGTGTTACTTCTTACAGTGA.............................................................................................................23110.001001027
..............................................................................................................TTGGTGTTACTTCTTACAG................................................................................................................1917.00731003
..............................................................................................................TTGGTGTTACTTCTTACAGTGC.............................................................................................................2215.00500104
..............................................................................................................TTGGTGTTACTTCTTACAGTGAT............................................................................................................2314.00400013
...............................................................................................................TGGTGTTACTTCTTACAGTG..............................................................................................................2013.00311001
................................................................................................................GGTGTTACTTCTTACAGTGA.............................................................................................................2012.00201001
..............................................................................................................TTGGTGTTACTTCTTACAGTA..............................................................................................................2112.00200002
..........................................TAAACGGCCCAATA--CGCTC..................................................................................................................................................................................1912.00220000
..............................................................................................................TTGGTGTTACTTCTTACAGTGAAA...........................................................................................................2412.00201100
.............................................................................................................CTTGGTGTTACTTCTTACAGTGT.............................................................................................................2311.00100001
..............................................................................................................TTGGTGTTACTTCTTACAGTT..............................................................................................................2111.00100001
..................................................................................................................TGTTACTTCTTACAGTGA.............................................................................................................1811.00100001
..............................................................................................................TTGGTGTTACTTCTTACAGTGAGT...........................................................................................................2411.00100001
..............................................................................................................TTGGTGTTACTTCTTACAC................................................................................................................1911.00110000
...................................................................................................................GTTACTTCTTACAGTGAA............................................................................................................1811.00101000
...............................................................................................................TGGTGTTACTTCTTACAGTGT.............................................................................................................2111.00100001
..............................................................................................................TTGGTGTTACTTCTTACA.................................................................................................................1811.00100001
...............................................................................................................TGGTGTTACTTCTTACAGT...............................................................................................................1911.00100001
...............................................................................................................TGGTGTTACTTCTTACAGTGAAA...........................................................................................................2311.00101000
...............................................................GCTGTAAATTGTAGCAATCAAAG...........................................................................................................................................................2311.00101000
.............................................................................................................CTTGGTGTTACTTCTTACAGTG..............................................................................................................2211.00100001
..............................................................................................................TTGGTGTTACTTCTTACAGTGAG............................................................................................................2311.00100001
...............................................................GCTGTAAATTGTAGCAATC...............................................................................................................................................................1911.00110000
...................................................................................................................GTTACTTCTTACAGTGAT............................................................................................................18100.10100001
droVir3
CAACACGTCACA-AGCTGA-----------------------------AATGACGTCACGCCCGCTGTAAAATGTAATCATCAGAGCGTC---CT--CTC----AACCGCTTGGTGTTACTTCTTACAGTGAGTGCGACGGCC--C-----------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM027

Male-body		M028

Head		M047

Female-body		M061

Embryo		SRR060654

Ovary		SRR060655

Testis		SRR060656

Ovary		SRR060657

Testis		SRR060658

Ovary		SRR060659

Testis		SRR060660

Ovary		SRR060661

Embryo		SRR060662

Embryo		SRR060663

Embryo		SRR060664

Male-body		SRR060665

Female-body		SRR060666

Male-body		SRR060667

Female-body		SRR060668

Male-body		SRR060669

Female-body		SRR060670

Testis		SRR060671

Male-body		SRR060672

Female-body		SRR060673

Ovary		SRR060674

Ovary		SRR060675

Ovary		SRR060676

Ovary		SRR060677

Ovary		SRR060678

Testis		SRR060679

Testis		SRR060680

Testis		SRR060681

Testis		SRR060682

Embryo		SRR060683

Testis		SRR060684

Embryo		SRR060685

Embryo		SRR060686

Embryo		SRR060687

Embryo		SRR060688

Ovary		SRR060689

Testis		SRR1106712

embryo_0-2h		SRR1106713

embryo_0-2h		SRR1106714

embryo_2-4h		SRR1106715

embryo_4-6h		SRR1106716

embryo_4-6h		SRR1106717

embryo_6-8h		SRR1106718

embryo_6-8h		SRR1106719

embryo_8-10h		SRR1106720

embryo_8-10h		SRR1106721

embryo_10-12h		SRR1106722

embryo_10-12h		SRR1106723

embryo_12-14h		SRR1106724

embryo_12-14h		SRR1106725

embryo_14-16h		SRR1106726

embryo_14-16h		SRR1106727

larvae		SRR1106728

larvae		SRR1106729

mixed whole adult body		SRR1106730

embryo_16-30h		V047

Embryo		V053

Head		V116

Male-body		GSM1528803

follicle cells		SRR2096013

Ovary_Strain_9_oxidized		SRR2096014

Ovary_Strain_160_oxidized		SRR2096026

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096038

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096050

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096055

Ovary_Min_43		SRR2096056

Ovary_Min_46		SRR2096057

Ovary_Min_50		SRR2096058

Ovary_Min_98		SRR2096059

Ovary_Min_164		SRR2096060

Ovary_Min_193		SRR2096061

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096072

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096079

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096080

embryo_0-2h from 15to16 day old nondysgenic mothers		SRR2096081

embryo_0-2h from 15to16 day old nondysgenic mothers
..............................................................................................................TTGGTGTTACTTCTTACAGTGA.............................................................................................................221962.0096205416463200001000078372683302902110000100822221270000053000000000010000000487441300001104020100000
..............................................................................................................TTGGTGTTACTTCTTACAGTG..............................................................................................................211175.0017513153000000000052730211700000711140170000071000000000000000001034600000000000000000
...............................................................GCTGTAAAATGTAATCATCAGAGC..........................................................................................................................................................24144.00441509000000000062211102300000000000000002000000000000000000016100000001000000000
..............................................................................................................TTGGTGTTACTTCTTACAGTGT.............................................................................................................22135.003500000000010000000100003000000000050000012000000000000000000033700000000000000000
...............................................................................................................TGGTGTTACTTCTTACAGTGA.............................................................................................................21118.001800160000000000000000000000000000000000001000000000000000000010000000000000000000
..............................................................................................................TTGGTGTTACTTCTTACAGTGG.............................................................................................................22113.001301200000000000000000000000000000000000000000000000000000000100000000000000000000
..............................................................................................................TTGGTGTTACTTCTTACAGTGAA............................................................................................................23112.00120030000000000011010000000000100101000003000000000000000000000000000000000000000
..............................................................................................................TTGGTGTTACTTCTTACAGTGAT............................................................................................................2319.0090000000000000000010001100000000200000003000000000000000000010000000000000000000
...............................................................GCTGTAAAATGTAATCATCAGAG...........................................................................................................................................................2317.0070100000000000040000200000000000000000000000000000000000000000000000000000000000
.............................................................................................................CTTGGTGTTACTTCTTACAGTGA.............................................................................................................2317.0070020000000000010010000000000000100000000000000000000000000011000000000000000000
..............................................................................................................TTGGTGTTACTTCTTACAG................................................................................................................1914.0040003000000000000000000000000000000000001000000000000000000000000000000000000000
.............................................................................................................CTTGGTGTTACTTCTTACAGTG..............................................................................................................2213.0030000000000000010010000000000100000000000000000000000000000000000000000000000000
...............................................................GCTGTAAAATGTAATCATCAGA............................................................................................................................................................2213.0030300000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................CCGCTGTAAAATGTAATCATCAGAGC..........................................................................................................................................................2613.0030100000000000000000000000000000000000000000000000000000000200000000000000000000
..............................................................................................................TTGGTGTTACTTCTTACAGT...............................................................................................................2013.0030000000000000001010000000000000000000000000000000000000000001000000000000000000
..............................................................................................................TTGGTGTTACTTCTTACAGTT..............................................................................................................2112.0020000000000000000000011000000000000000000000000000000000000000000000000000000000
..............................................................................................................TTGGTGTTACTTCTTACAGTGC.............................................................................................................2212.0020000000000000000010000000000000000000000000000000000000000001000000000000000000
...............................................................................................................TGGTGTTACTTCTTACAGTGT.............................................................................................................2111.0010000000000000000000000000000000000000001000000000000000000000000000000000000000
..............................................................................................................TTGGTGTTACTTCTTACAGTGAAA...........................................................................................................2411.0010000000000000000000000000000000000000001000000000000000000000000000000000000000
..................................................................................................................TGTTACTTCTTACAGTGAAA...........................................................................................................2011.0010000000000000000000000000000000000000001000000000000000000000000000000000000000
...................................................................................................................GTTACTTCTTACAGTGAA............................................................................................................1811.0010000000000000000000000000000000000000001000000000000000000000000000000000000000
..............................................................................................................TTGGTGTTACTTCTTACAGTC..............................................................................................................2111.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................TGTTACTTCTTACAGTGA.............................................................................................................1811.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................TGGTGTTACTTCTTACAGTG..............................................................................................................2011.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................GGTGTTACTTCTTACAGTGA.............................................................................................................2011.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................TGGTGTTACTTCTTACAGTGAA............................................................................................................2211.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................TGTTACTTCTTACAGTGAA............................................................................................................1911.0010000000000000000000000000000000000000001000000000000000000000000000000000000000
................TGA-----------------------------AATGACGTCACGCCC..................................................................................................................................................................................1811.0010100000000000000000000000000000000000000000000000000000000000000000000000000000
..............................................................................................................TTGGTGTTACTTCTTACAC................................................................................................................1911.0010001000000000000000000000000000000000000000000000000000000000000000000000000000
droMoj3
CGA----------------------------------------------------------CCGCTGTAAATTGTAATCATCAAAGCGTC---TG--CTA----AATCGCTTGGTGTTACTTCTTACAGTGAGCGCGGCGCTC--------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM046

Female-body		V041

Embryo		V049

Head		V056

Head		M060

Embryo		V110

Male-body
..............................................................................................................TTGGTGTTACTTCTTACAGTGA.............................................................................................................221543.0054319051435618914
...............................................................GCTGTAAATTGTAATCATCAAAGC..........................................................................................................................................................24140.00402111350
...............................................................................................................TGGTGTTACTTCTTACAGTGA.............................................................................................................21123.00232200010
.............................................................................................................CTTGGTGTTACTTCTTACAGTGA.............................................................................................................23120.00206001121
..............................................................................................................TTGGTGTTACTTCTTACAGTG..............................................................................................................21118.0018722340
...............................................................GCTGTAAATTGTAATCATCAAAG...........................................................................................................................................................2318.008112040
..............................................................................................................TTGGTGTTACTTCTTACAGTGT.............................................................................................................2218.008004310
...............................................................GCTGTAAATTGTAATCATCA..............................................................................................................................................................2017.007103300
..............................................................................................................TTGGTGTTACTTCTTACAGTGAA............................................................................................................2313.003200001
..............................................................................................................TTGGTGTTACTTCTTACAGTGAT............................................................................................................2313.003210000
..............................................................................................................TTGGTGTTACTTCTTACAGT...............................................................................................................2013.003002010
..............................................................................................................TTGGTGTTACTTCTTACAG................................................................................................................1913.003000030
................................................................................................................GGTGTTACTTCTTACAGTGA.............................................................................................................2012.002200000
.............................................................................................................CTTGGTGTTACTTCTTACAGTG..............................................................................................................2212.002010100
...............................................................GCTGTAAATTGTAATCATC...............................................................................................................................................................1912.002002000
.............................................................................................................CTTGGTGTTACTTCTTACAGT...............................................................................................................2112.002000020
...............................................................................................................TGGTGTTACTTCTTACAGTG..............................................................................................................2011.001100000
..............................................................................................................TTGGTGTTACTTCTTACAGTGAC............................................................................................................2311.001000010
..............................................................CGCTGTAAATTGTAATCATC...............................................................................................................................................................2011.001000100
..............................................................CGCTGTAAATTGTAATCATCA..............................................................................................................................................................2111.001000100
...............................................................GCTGTAAATTGTAATCATCAAAGA..........................................................................................................................................................2411.001000010
..................................................................................................................TGTTACTTCTTACAGTGA.............................................................................................................1811.001010000
..............................................................................................................TTGGTGTTACTTCTTACAGTGATT...........................................................................................................2411.001000010
..............................................................................................................TTGGTGTTACTTCTTACAGTGC.............................................................................................................2211.001001000
...............................................................GCTGTAAATTGTAATCATCAA.............................................................................................................................................................2111.001000100
droGri2
C--------------------------------------------TTGAATGACGTCACGCCCGCTGTAATATGTAATCATCAAAGCGTG---TAT-TTT----ACTCGCTTGGTGTTACTTCTTACAGTGAGTGCGACGGCC--A---C--ACGTCCAGC--GGAGGAGA----------------------------------------------------------------------SizeHit CountTotal NormTotalM041

Female-body		V109

Male-body
..............................................................................................................TTGGTGTTACTTCTTACAGTGA.............................................................................................................22111.0011110
................................................................................................................GGTGTTACTTCTTACAGTGA.............................................................................................................2011.00110
..............................................................................................................TTGGTGTTACTTCTTACAGTGT.............................................................................................................2211.00101
.............................................................................................................CTTGGTGTTACTTCTTACAGTGA.............................................................................................................2311.00110
...............................................................................................................TGGTGTTACTTCTTACAGTGA.............................................................................................................2111.00110

Generated: 10/20/2015 at 10:12 PM