ID:

der_6

 Coordinate:

scaffold_4770:471062-471118 +

 Confidence:

Known Ortholog

 Class:

Canonical miRNA

 Genomic Locale:

intron

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-45.1

Flybase annnotation

intron [Dere\GG12264-in]; utr5 [utr5_plus_9305]

No Repeatable elements found

Sense Strand Reads

AGCCATACATTACGCGCCTTGAAGTGGCGGAACCAGTCCTGGTGAAGCTCAAATTGACTCTAGTAGGGAGTCCTTCCATAAGCGACTCCCTAACGGAGTCAGATTGAGCTACAAAGGAGCGAGACAACACAGGTGCACTTAAAAAGGTGTTAGCCGT

***********************************.((((..((.(((((((.((((((((..((((((((((((....))).)))))))))..)))))))).))))))).)).))))...************************************ 		Read size # Mismatch Hit Count Total Norm Total V108

head

 V060

head

 V107

male body		 M055

female body

 V040

embryo

 M057

embryo
..................................................AAATTGACTCTAGTAGGGAGT...................................................................................... 21 0 1 55442.00 55442 44557 3135 7051 192 423 84
..................................................AAATTGACTCTAGTAGGGAGTC..................................................................................... 22 0 1 17077.00 17077 11733 2693 1964 248 233 206
.....................................................................................CTCCCTAACGGAGTCAGATTG................................................... 21 0 1 6750.00 6750 4988 1427 143 184 7 1
..................................................AAATTGACTCTAGTAGGGAGTCA.................................................................................... 23 1 1 2769.00 2769 1992 485 224 47 19 2
..................................................AAATTGACTCTAGTAGGGAG....................................................................................... 20 0 1 1565.00 1565 1137 234 159 31 1 3
.....................................................................................CTCCCTAACGGAGTCAGATTGA.................................................. 22 0 1 1530.00 1530 158 1343 1 19 6 3
..................................................AAATTGACTCTAGTAGGGAGTCT.................................................................................... 23 1 1 1528.00 1528 960 264 217 51 20 16
..................................................AAATTGACTCTAGTAGGGT........................................................................................ 19 1 1 1427.00 1427 1348 45 34 0 0 0
..................................................AAATTGACTCTAGTATGGAGT...................................................................................... 21 1 1 1126.00 1126 1108 10 4 0 4 0
..................................................AAATTGACTCTAGTAGGG......................................................................................... 18 0 1 814.00 814 768 36 6 4 0 0
..................................................AAATTGACTCTAGTAGTGAGT...................................................................................... 21 1 1 782.00 782 751 22 3 1 5 0
..................................................AAATTTACTCTAGTAGGGAGT...................................................................................... 21 1 1 536.00 536 522 2 11 0 0 1
...................................................AATTGACTCTAGTAGGGAGT...................................................................................... 20 0 1 522.00 522 413 17 80 10 1 1
..................................................AAATTGACTCTAGTAGGTAGT...................................................................................... 21 1 1 475.00 475 444 20 7 0 4 0
..................................................AAATTGACTCTAGTAGGGAGTCG.................................................................................... 23 1 1 361.00 361 216 64 65 16 0 0
..................................................AAATTGACTATAGTAGGGAGT...................................................................................... 21 1 1 348.00 348 343 3 2 0 0 0
..................................................AAATTGACTCTAGTATGGAGTC..................................................................................... 22 1 1 306.00 306 285 14 2 1 3 1
..................................................AAGTTGACTCTAGTAGGGAGT...................................................................................... 21 1 1 299.00 299 246 12 40 1 0 0
..................................................AAATTGACTCTAGTAGTGAGTC..................................................................................... 22 1 1 261.00 261 232 25 3 0 1 0
....................................................ATTGACTCTAGTAGGGAGT...................................................................................... 19 0 1 233.00 233 213 0 18 2 0 0
...................................................AATTGACTCTAGTAGGGAGTC..................................................................................... 21 0 1 231.00 231 144 48 13 23 0 3
..................................................AGATTGACTCTAGTAGGGAGT...................................................................................... 21 1 1 225.00 225 165 15 40 0 0 5
..................................................AAATTGACTCTATTAGGGAGT...................................................................................... 21 1 1 210.00 210 198 9 2 0 1 0
..................................................AAATTGACTCTAGTGGGGAGT...................................................................................... 21 1 1 157.00 157 134 6 16 0 1 0
..................................................AAATTGACTCTAGTAGGTAGTC..................................................................................... 22 1 1 136.00 136 115 14 3 1 3 0
......................................................................................TCCCTAACGGAGTCAGATTGA.................................................. 21 0 1 135.00 135 84 40 3 4 3 1
..................................................AAATTGACTCTAGTAGGGAGTCC.................................................................................... 23 0 1 130.00 130 89 20 12 4 2 3
..................................................AAATTGACTCTAGTAGGGAGC...................................................................................... 21 1 1 122.00 122 89 9 10 1 1 12
..................................................AAATTTACTCTAGTAGGGAGTC..................................................................................... 22 1 1 117.00 117 111 1 3 1 0 1
..................................................AAATTGACTCTAGTAGGGA........................................................................................ 19 0 1 116.00 116 75 13 20 3 5 0
..................................................AAATTGACTCTAGCAGGGAGT...................................................................................... 21 1 1 99.00 99 88 5 3 0 3 0
.....................................................................................CTCCATAACGGAGTCAGATTG................................................... 21 1 1 92.00 92 88 4 0 0 0 0
..................................................AAATTGACTCTAGTAGGGATT...................................................................................... 21 1 1 91.00 91 81 7 1 2 0 0
......................................................................................TCCCTAACGGAGTCAGATTG................................................... 20 0 1 90.00 90 49 18 1 21 1 0
..................................................AAATTGACTATAGTAGGGAGTC..................................................................................... 22 1 1 89.00 89 86 1 2 0 0 0
..................................................GAATTGACTCTAGTAGGGAGT...................................................................................... 21 1 1 88.00 88 65 4 19 0 0 0
..................................................AAATTGAATCTAGTAGGGAGT...................................................................................... 21 1 1 87.00 87 83 1 1 1 0 1
.....................................................................................CTCACTAACGGAGTCAGATTG................................................... 21 1 1 86.00 86 84 1 0 1 0 0
..................................................AAATTGACTCTAGTAGGGAGTA..................................................................................... 22 1 1 82.00 82 72 6 3 0 0 1
..................................................AAATTGACTCTAGTAGGGGGT...................................................................................... 21 1 1 81.00 81 53 19 7 1 1 0
.....................................................................................CTCCCTAACTGAGTCAGATTG................................................... 21 1 1 81.00 81 81 0 0 0 0 0
..................................................AAATTGGCTCTAGTAGGGAGT...................................................................................... 21 1 1 79.00 79 63 5 9 0 2 0
..................................................AGATTGACTCTAGTAGGGAGTC..................................................................................... 22 1 1 78.00 78 37 8 15 0 0 18
..................................................AAATTGACTCTAGTAGGGAGTT..................................................................................... 22 1 1 70.00 70 48 12 8 0 2 0
..................................................AAGTTGACTCTAGTAGGGAGTC..................................................................................... 22 1 1 70.00 70 48 8 13 1 0 0
..................................................AAATTGACCCTAGTAGGGAGT...................................................................................... 21 1 1 68.00 68 62 5 1 0 0 0
..................................................AAATTGACTCTAGTGGGGAGTC..................................................................................... 22 1 1 67.00 67 44 11 11 1 0 0
.................................................CAAATTGACTCTAGTAGGGAGT...................................................................................... 22 0 1 65.00 65 53 6 4 2 0 0
..................................................AACTTGACTCTAGTAGGGAGT...................................................................................... 21 1 1 65.00 65 65 0 0 0 0 0
..................................................AAATTGACTCTAGTCGGGAGT...................................................................................... 21 1 1 60.00 60 44 15 1 0 0 0
..................................................AAATTGACTCTAGTATGGAGTCA.................................................................................... 23 2 1 58.00 58 57 1 0 0 0 0
..................................................AAATTGACTCCAGTAGGGAGT...................................................................................... 21 1 1 57.00 57 51 3 3 0 0 0
..................................................AAATCGACTCTAGTAGGGAGT...................................................................................... 21 1 1 55.00 55 45 3 6 0 1 0
..................................................AAATTGACTCTATTAGGGAGTC..................................................................................... 22 1 1 54.00 54 45 4 2 1 2 0
..................................................AAATTGACTCTAGTAGGT......................................................................................... 18 1 2 54.00 108 106 1 1 0 0 0
..................................................AAATTGACTCTAGTAGGGCGT...................................................................................... 21 1 1 50.00 50 33 16 1 0 0 0
................................................TCAAATTGACTCTAGTAGGGAGT...................................................................................... 23 0 1 49.00 49 40 2 6 0 1 0
..................................................AAACTGACTCTAGTAGGGAGT...................................................................................... 21 1 1 49.00 49 39 3 4 0 2 1
..................................................AAATTGACTCTAGTAAGGAGT...................................................................................... 21 1 1 47.00 47 31 13 3 0 0 0
..................................................AAATTGACTCTAGTAGAGAGT...................................................................................... 21 1 1 46.00 46 28 17 1 0 0 0
.....................................................................................CTCCCTAACGTAGTCAGATTG................................................... 21 1 1 44.00 44 42 2 0 0 0 0
..................................................AAATTGACTCTAGTATGGAG....................................................................................... 20 1 1 43.00 43 39 2 1 0 0 1
.....................................................................................CTACCTAACGGAGTCAGATTG................................................... 21 1 1 41.00 41 40 1 0 0 0 0
..................................................AAATTGACTCTAGTAGGGATTC..................................................................................... 22 1 1 40.00 40 27 9 0 1 3 0
..................................................AAATTGACTCTAGTAGTGAGTCA.................................................................................... 23 2 1 40.00 40 35 5 0 0 0 0
..................................................ACATTGACTCTAGTAGGGAGT...................................................................................... 21 1 1 39.00 39 34 1 3 0 0 1
..................................................AAATTGACTCTCGTAGGGAGT...................................................................................... 21 1 1 39.00 39 22 15 0 0 2 0
..................................................AAATTGACTCTACTAGGGAGT...................................................................................... 21 1 1 38.00 38 32 2 4 0 0 0
..................................................AAATTGACTCTAGTATGGT........................................................................................ 19 2 1 38.00 38 36 2 0 0 0 0
..................................................AAAGTGACTCTAGTAGGGAGT...................................................................................... 21 1 1 37.00 37 31 5 0 0 1 0
..................................................AAATTGACTCTAGTAGGGAGG...................................................................................... 21 1 1 36.00 36 19 9 1 4 2 1
..................................................AAATTGACTCTGGTAGGGAGT...................................................................................... 21 1 1 36.00 36 27 4 5 0 0 0
..................................................AAATTGACTCTAGCAGGGAGTC..................................................................................... 22 1 1 36.00 36 23 10 3 0 0 0
..................................................AAATTCACTCTAGTAGGGAGT...................................................................................... 21 1 1 35.00 35 29 2 2 1 1 0
..................................................AAATTGACTCTAGTAGGGAGTTT.................................................................................... 23 2 1 35.00 35 18 2 12 3 0 0
.....................................................................................ATCCCTAACGGAGTCAGATTG................................................... 21 1 1 34.00 34 32 2 0 0 0 0
.....................................................................................CTCCCTAACGGAGTCATATTG................................................... 21 1 1 33.00 33 31 2 0 0 0 0
..................................................AAATTAACTCTAGTAGGGAGT...................................................................................... 21 1 1 32.00 32 29 2 1 0 0 0
..................................................AAATTGACTCTAGTAGGAAGT...................................................................................... 21 1 1 32.00 32 29 3 0 0 0 0
..................................................AATTTGACTCTAGTAGGGAGT...................................................................................... 21 1 1 32.00 32 31 0 1 0 0 0
..................................................AAATTGGCTCTAGTAGGGAGTC..................................................................................... 22 1 1 32.00 32 19 8 4 0 0 1
..................................................AAATTGATTCTAGTAGGGAGT...................................................................................... 21 1 1 30.00 30 25 2 3 0 0 0
..................................................AAATTGACTCTAGTAGGGAGCC..................................................................................... 22 1 1 30.00 30 21 8 0 0 1 0
..................................................AAATTGCCTCTAGTAGGGAGT...................................................................................... 21 1 1 29.00 29 23 2 2 1 1 0
.....................................................................................CTCCCTAACGGAGTAAGATTG................................................... 21 1 1 29.00 29 29 0 0 0 0 0
..................................................AAATTGACTCTAGTAGGGACT...................................................................................... 21 1 1 28.00 28 22 3 0 1 2 0
..................................................AAATTGACTCTAGAAGGGAGT...................................................................................... 21 1 1 28.00 28 22 3 3 0 0 0
..................................................AAATTGACTCTAGTAGGGAGA...................................................................................... 21 1 1 27.00 27 22 2 1 1 1 0
..................................................AAATTGACTCTAGTAGCGAGT...................................................................................... 21 1 1 27.00 27 19 3 3 0 2 0
..................................................AAATTGACTCTAGTAGGGGGTC..................................................................................... 22 1 1 27.00 27 16 8 2 1 0 0
..................................................AAATTTACTCTAGTATGGAGT...................................................................................... 21 2 1 26.00 26 26 0 0 0 0 0
..................................................AAATTGACTCTAGTAAGGAGTC..................................................................................... 22 1 1 26.00 26 13 10 3 0 0 0
..................................................AAATTGACTCTAGTAGGTAG....................................................................................... 20 1 1 26.00 26 19 7 0 0 0 0
.....................................................................................CTCCCTAACGGAGTCAGATTT................................................... 21 1 1 25.00 25 20 4 0 1 0 0
..................................................AAATTGACTCTAGTAGGAGT....................................................................................... 20 3 2 24.00 48 39 3 5 1 0 0
..................................................TAATTGACTCTAGTAGGGAGT...................................................................................... 21 1 1 24.00 24 20 0 1 1 0 2
..................................................AAATTGACTCTAGTAGGTAGTCA.................................................................................... 23 2 1 24.00 24 21 3 0 0 0 0
..................................................AAATTGACCCTAGTAGGGAGTC..................................................................................... 22 1 1 24.00 24 17 7 0 0 0 0
..................................................AAATTGACTCTAGTAGTGAG....................................................................................... 20 1 1 24.00 24 18 5 1 0 0 0
..................................................AAATTTACTCTAGTAGGGAGTCA.................................................................................... 23 2 1 24.00 24 23 0 1 0 0 0
..................................................AAATTGACTCTCGTAGGGAGTC..................................................................................... 22 1 1 23.00 23 6 15 0 0 2 0
.....................................................................................CTCCCTAACGGAGTCAGATT.................................................... 20 0 1 23.00 23 21 0 0 2 0 0
..................................................AAATTGACTCTAGTAGAGAGTC..................................................................................... 22 1 1 23.00 23 8 13 1 0 1 0
..................................................AAATTGACTCTAGTAGTGAGTCT.................................................................................... 23 2 1 23.00 23 20 1 1 0 1 0
..................................................AAATTGACTCTAGTAGGAAGTC..................................................................................... 22 1 1 22.00 22 15 5 1 0 0 1
..................................................AAATTGACTCTAGTACGGAGT...................................................................................... 21 1 1 22.00 22 19 1 1 1 0 0
..................................................GAATTGACTCTAGTAGGGAGTC..................................................................................... 22 1 1 22.00 22 19 1 2 0 0 0
..................................................AAAATGACTCTAGTAGGGAGT...................................................................................... 21 1 1 22.00 22 21 0 1 0 0 0
........................................................................................CCTAACGGAGTCAGATTGA.................................................. 19 0 1 21.00 21 18 3 0 0 0 0
...................................................AATTGACTCTAGTAGGGAG....................................................................................... 19 0 1 21.00 21 13 2 4 2 0 0
..................................................AAATTGACTCTAGTAGGGAGGC..................................................................................... 22 1 1 21.00 21 7 7 1 5 0 1
..................................................AAATTGAATCTAGTAGGGAGTC..................................................................................... 22 1 1 21.00 21 19 1 0 1 0 0
..................................................AAATTGACTCTAGTATGGAGTCT.................................................................................... 23 2 1 21.00 21 20 1 0 0 0 0
..................................................AAATTGACTCTAGGAGGGAGT...................................................................................... 21 1 1 21.00 21 12 4 1 1 3 0
.....................................................................................CTCCCTAACGGAGTCAGCTTG................................................... 21 1 1 20.00 20 7 12 0 1 0 0
..................................................AAATTGACTCTACTAGGGAGTC..................................................................................... 22 1 1 20.00 20 16 3 1 0 0 0
..................................................AAATTGACTCTAGTCGGGAGTC..................................................................................... 22 1 1 20.00 20 5 10 3 0 1 1
...................................................AAATTACTCTAGTAGGGAGT...................................................................................... 20 2 1 20.00 20 16 0 4 0 0 0
..................................................AAATCGACTCTAGTAGGGAGTC..................................................................................... 22 1 1 20.00 20 16 1 3 0 0 0
......................................................................................TCCCTAACGGAGTCAGATTGAG................................................. 22 0 1 20.00 20 8 9 0 1 2 0
.........................................................................................CTAACGGAGTCAGATTGA.................................................. 18 0 1 20.00 20 20 0 0 0 0 0
..................................................AAATTGACTTTAGTAGGGAGT...................................................................................... 21 1 1 19.00 19 16 2 1 0 0 0
.....................................................................................CTCCCTAACGGATTCAGATTG................................................... 21 1 1 19.00 19 17 2 0 0 0 0
..................................................AAATTGACTCTAGTATGG......................................................................................... 18 1 1 18.00 18 17 1 0 0 0 0
..................................................AAATTGACTCTAGTAGGGTGT...................................................................................... 21 1 1 18.00 18 6 10 1 0 1 0
..................................................AAATTGACTCTTGTAGGGAGT...................................................................................... 21 1 1 18.00 18 9 3 3 1 2 0
.....................................................................................CTCCCTAACGGAGTCAGATTGAA................................................. 23 1 1 18.00 18 7 9 0 2 0 0
..................................................AAATTGACTCTAGTAGGCAGT...................................................................................... 21 1 1 17.00 17 13 0 2 1 1 0
..................................................ATATTGACTCTAGTAGGGAGT...................................................................................... 21 1 1 17.00 17 14 1 1 0 0 1
..................................................AAATTGACTCTAGTAGGGAAT...................................................................................... 21 1 1 17.00 17 10 6 1 0 0 0
..................................................AAATTGACTATAGTAGGGAGTCA.................................................................................... 23 2 1 16.00 16 16 0 0 0 0 0
..................................................AAATTGACTCTGGTAGGGAGTC..................................................................................... 22 1 1 16.00 16 13 3 0 0 0 0
..................................................AAATTGACTCTAATAGGGAGT...................................................................................... 21 1 1 16.00 16 13 2 1 0 0 0
..................................................AACTTGACTCTAGTAGGGAGTC..................................................................................... 22 1 1 16.00 16 14 1 1 0 0 0
..................................................AAATTGACTCTAGTAGGGTTT...................................................................................... 21 2 1 16.00 16 14 1 0 1 0 0
..................................................AAAGTGACTCTAGTAGGGAGTC..................................................................................... 22 1 1 16.00 16 10 5 0 0 0 1
.....................................................................................CTCCCTAACGGAGCCAGATTG................................................... 21 1 1 16.00 16 10 5 1 0 0 0
..................................................CAATTGACTCTAGTAGGGAGT...................................................................................... 21 1 1 16.00 16 14 0 0 0 2 0
..................................................AAATTTACTCTAGTAGGGAG....................................................................................... 20 1 1 15.00 15 15 0 0 0 0 0
..................................................AAATTGACTCTAGTAGGGAGTAT.................................................................................... 23 2 1 15.00 15 10 1 4 0 0 0
..................................................AAATTGACTCTAGTAGGGAGTTA.................................................................................... 23 2 1 15.00 15 9 4 2 0 0 0
.....................................................................................CTCCCTAACGGAGTCAGATTGC.................................................. 22 1 1 15.00 15 0 15 0 0 0 0
.....................................................................................CTCCCTAACGGCGTCAGATTG................................................... 21 1 1 15.00 15 2 13 0 0 0 0
....................................................ATTGACTCTAGTAGGGAGTC..................................................................................... 20 0 1 15.00 15 11 1 0 2 0 1
..................................................AAATTGACTCTAGTAGGTAGTCT.................................................................................... 23 2 1 14.00 14 11 3 0 0 0 0
..................................................AAATTGACTCTATTAGGGAGTCA.................................................................................... 23 2 1 14.00 14 13 1 0 0 0 0
..................................................AAATTGACTCTAGTAGGGAGTAA.................................................................................... 23 2 1 14.00 14 13 0 1 0 0 0
..................................................AAATTGACTCTAGTAGGGAGTCTT................................................................................... 24 1 1 13.00 13 10 2 0 0 0 1
..................................................AAATTGACTCTAGTAGTG......................................................................................... 18 1 1 13.00 13 13 0 0 0 0 0
..................................................AAATTGACTCTAGTACGGAGTC..................................................................................... 22 1 1 13.00 13 6 3 1 0 3 0
..................................................ACATTGACTCTAGTAGGGAGTC..................................................................................... 22 1 1 13.00 13 7 5 1 0 0 0
..................................................AAATTGACTCTAGTAGGGCGTC..................................................................................... 22 1 1 13.00 13 4 9 0 0 0 0
..................................................AAACTGACTCTAGTAGGGAGTC..................................................................................... 22 1 1 13.00 13 8 2 0 0 0 3
.....................................................TTGACTCTAGTAGGGAGT...................................................................................... 18 0 1 13.00 13 13 0 0 0 0 0
..................................................AAATTGAGTCTAGTAGGGAGT...................................................................................... 21 1 1 13.00 13 9 2 1 0 1 0
..................................................AAATTGACTCCAGTAGGGAGTC..................................................................................... 22 1 1 12.00 12 9 2 0 0 1 0
..................................................AAATTGACACTAGTAGGGAGT...................................................................................... 21 1 1 12.00 12 11 0 1 0 0 0
..................................................AATTTGACTCTAGTAGGGAGTC..................................................................................... 22 1 1 12.00 12 11 0 1 0 0 0
.....................................................................................CTCCCTAACGGCGTCAGATTGA.................................................. 22 1 1 12.00 12 0 12 0 0 0 0
..................................................AAATTGACTCTAGTTGGGAGT...................................................................................... 21 1 1 12.00 12 10 0 1 0 1 0
.................................................CAAATTGACTCTAGTAGGGAGTC..................................................................................... 23 0 1 12.00 12 5 0 1 2 0 4
..................................................AAATTGACTCTAGTAGGGAT....................................................................................... 20 1 1 12.00 12 9 1 1 1 0 0
..................................................AAATTGACTCTAGCAGGGAGTCA.................................................................................... 23 2 1 12.00 12 10 2 0 0 0 0
.....................................................................................CTCCCTAATGGAGTCAGATTG................................................... 21 1 1 11.00 11 10 1 0 0 0 0
...................................................AATTTACTCTAGTAGGGAGT...................................................................................... 20 1 1 11.00 11 10 0 0 1 0 0
..................................................AAATTGACTCTATTAGGGAGTCT.................................................................................... 23 2 1 11.00 11 10 1 0 0 0 0
..................................................AAATTGACTCTAGAAGGGAGTC..................................................................................... 22 1 1 11.00 11 9 2 0 0 0 0
..................................................AAATAGACTCTAGTAGGGAGT...................................................................................... 21 1 1 11.00 11 5 3 3 0 0 0
..................................................AAATTGACTGTAGTAGGGAGT...................................................................................... 21 1 1 11.00 11 8 1 2 0 0 0
..................................................AAGTTGACTCTAGTAGGGAG....................................................................................... 20 1 1 11.00 11 7 0 3 1 0 0
...................................................AAATTACTCTAGTAGGGAGTC..................................................................................... 21 2 1 10.00 10 9 1 0 0 0 0
..................................................AAAATGACTCTAGTAGGGAGTC..................................................................................... 22 1 1 10.00 10 5 1 1 0 0 3
..................................................AAATTGTCTCTAGTAGGGAGT...................................................................................... 21 1 1 10.00 10 7 2 1 0 0 0
.....................................................................................CTCCCTAACGGAGTCCGATTG................................................... 21 1 1 10.00 10 4 6 0 0 0 0
..................................................AAATTTACTCTAGTAGGG......................................................................................... 18 1 1 10.00 10 10 0 0 0 0 0
..................................................AAATTGACTCTAGTGGGGAG....................................................................................... 20 1 1 10.00 10 7 1 2 0 0 0
.....................................................................................CTCCCTAGCGGAGTCAGATTG................................................... 21 1 1 10.00 10 7 3 0 0 0 0
..................................................AAATTGACTCTAGTAGGGAATC..................................................................................... 22 1 1 10.00 10 8 1 0 0 1 0
..................................................AAGTTGACTCTAGTAGGGAGTCT.................................................................................... 23 2 1 10.00 10 7 3 0 0 0 0
...................................................AATTGACTCTAGTAGGGAGTCA.................................................................................... 22 1 1 10.00 10 5 0 0 5 0 0
..................................................AAATTGACTCTAGTAGGGAGTAAT................................................................................... 24 2 1 10.00 10 6 1 3 0 0 0
.....................................................................................CTCCCTAACGGAGTCAGACTG................................................... 21 1 1 9.00 9 6 3 0 0 0 0
..................................................AAATTGACTCTAGTAGGCAGTC..................................................................................... 22 1 1 9.00 9 6 3 0 0 0 0
.....................................................................................CTCCCTAACGGAGTCAGATTGAT................................................. 23 1 1 9.00 9 4 5 0 0 0 0
.....................................................................................TTCCCTAACGGAGTCAGATTG................................................... 21 1 1 9.00 9 4 4 0 1 0 0
..................................................AAATTGACTCTAGTATGGAGTCG.................................................................................... 23 2 1 9.00 9 8 0 1 0 0 0
..................................................AAATTAACTCTAGTAGGGAGTC..................................................................................... 22 1 1 9.00 9 9 0 0 0 0 0
.....................................................................................CTCCCTAACGCAGTCAGATTG................................................... 21 1 1 9.00 9 8 1 0 0 0 0
..................................................AAATTTACTCTAGTAGTGAGT...................................................................................... 21 2 1 9.00 9 9 0 0 0 0 0
.....................................................................................CTCCCTGACGGAGTCAGATTG................................................... 21 1 1 9.00 9 6 1 1 1 0 0
..................................................AAATTTACTCTAGTAGGTAGT...................................................................................... 21 2 1 9.00 9 9 0 0 0 0 0
..................................................AGATTGACTCTAGTAGGGAG....................................................................................... 20 1 1 9.00 9 3 1 3 1 0 1
..................................................AAATTTACTCTAGTATGGAGTC..................................................................................... 22 2 1 9.00 9 9 0 0 0 0 0
..................................................AAATTGACTCTAGTAGCGAGTC..................................................................................... 22 1 1 9.00 9 7 1 0 1 0 0
......................................................................................CTCCTAACGGAGTCAGATTG................................................... 20 2 1 8.00 8 7 1 0 0 0 0
..................................................AAATTGACTATAGTAGGGT........................................................................................ 19 2 1 8.00 8 8 0 0 0 0 0
..................................................AAATTGACTTTAGTAGGGAGTC..................................................................................... 22 1 1 8.00 8 4 1 2 1 0 0
.....................................................................................CTCTCTAACGGAGTCAGATTG................................................... 21 1 1 8.00 8 1 7 0 0 0 0
..................................................AAATTGACTCAAGTAGGGAGT...................................................................................... 21 1 1 8.00 8 8 0 0 0 0 0
.....................................................................................CTCCCTAAAGGAGTCAGATTG................................................... 21 1 1 8.00 8 8 0 0 0 0 0
.....................................................................................CCCCCTAACGGAGTCAGATTG................................................... 21 1 1 8.00 8 7 1 0 0 0 0
..................................................AAATTGACTCTAGTAGGGAGTCAA................................................................................... 24 2 1 8.00 8 3 0 0 5 0 0
..................................................GGATTGACTCTAGTAGGGAGT...................................................................................... 21 2 1 8.00 8 5 0 3 0 0 0
..................................................AAATTGCCTCTAGTAGGGAGTC..................................................................................... 22 1 1 8.00 8 6 0 0 2 0 0
..................................................AAATTGACTCTAGTAGGGACTC..................................................................................... 22 1 1 8.00 8 7 0 0 1 0 0
.....................................................................................CTCCCTAACGGAGGCAGATTG................................................... 21 1 1 8.00 8 3 3 1 1 0 0
..................................................AAGTTGACTCTAGTAGGGAGTCA.................................................................................... 23 2 1 8.00 8 7 0 1 0 0 0
........................................................................................CCTAACGGAGTCAGATTG................................................... 18 0 1 8.00 8 7 1 0 0 0 0
...................................................AATTGACTCTAGTATGGAGT...................................................................................... 20 1 1 8.00 8 7 0 0 1 0 0
..................................................AAATTCACTCTAGTAGGGAGTC..................................................................................... 22 1 1 8.00 8 6 1 1 0 0 0
..................................................AAATTTACTCTAGTAGGGT........................................................................................ 19 2 2 8.00 16 16 0 0 0 0 0
....................................................ATTGACTCTAGTAGGGAG....................................................................................... 18 0 1 8.00 8 5 1 1 1 0 0
...................................................AATTGACTCTAGTAGGGAGTCT.................................................................................... 22 1 1 7.00 7 3 0 2 2 0 0
..................................................AAATTGACTCTAGTAGTGATT...................................................................................... 21 2 1 7.00 7 3 4 0 0 0 0
..................................................AAATTGACTATAGTAGGGAG....................................................................................... 20 1 1 7.00 7 7 0 0 0 0 0
...................................................AATTGACTCTAGTAGGTAGT...................................................................................... 20 1 1 7.00 7 7 0 0 0 0 0
..................................................AAATTGACTCGAGTAGGGAGT...................................................................................... 21 1 1 7.00 7 6 1 0 0 0 0
.....................................................................................CTCCCTAACGGAGTCACATTG................................................... 21 1 1 7.00 7 6 1 0 0 0 0
..................................................AAATTGACTCTAGTAGGGAGTG..................................................................................... 22 1 1 7.00 7 4 3 0 0 0 0
..................................................AAGTTGACTCTAGTATGGAGT...................................................................................... 21 2 1 7.00 7 7 0 0 0 0 0
..................................................AAGTTTACTCTAGTAGGGAGT...................................................................................... 21 2 1 7.00 7 7 0 0 0 0 0
.....................................................................................CTCCCTAACGGAGTCGGATTG................................................... 21 1 1 7.00 7 5 2 0 0 0 0
..................................................AAATTGACTCTATTAGTGAGT...................................................................................... 21 2 1 7.00 7 5 2 0 0 0 0
..................................................ATATTGACTCTAGTAGGGAGTC..................................................................................... 22 1 1 7.00 7 2 1 0 0 0 4
..................................................AAATTGACTCTAGCAGGGT........................................................................................ 19 2 1 6.00 6 6 0 0 0 0 0
.....................................................................................CTCCCTAACGGAGACAGATTG................................................... 21 1 1 6.00 6 2 4 0 0 0 0
..................................................AAATTGACTCTAGTAGGGAGTCAC................................................................................... 24 2 1 6.00 6 3 1 2 0 0 0
..................................................AGGTTGACTCTAGTAGGGAGT...................................................................................... 21 2 1 6.00 6 6 0 0 0 0 0
.....................................................................................CTCCCTAACGGAGTCAGGTTG................................................... 21 1 1 6.00 6 4 2 0 0 0 0
.....................................................................................CTCCCTAACGGATTCAGATTGA.................................................. 22 1 1 6.00 6 2 4 0 0 0 0
..................................................AAATTGACTATAGTAGGG......................................................................................... 18 1 1 6.00 6 6 0 0 0 0 0
..................................................CAATTGACTCTAGTAGGGAGTC..................................................................................... 22 1 1 6.00 6 4 0 2 0 0 0
..................................................AAATTTACTCTAGTAGGGAGTCT.................................................................................... 23 2 1 6.00 6 6 0 0 0 0 0
.....................................................................................CTCCCTAACGGGGTCAGATTG................................................... 21 1 1 6.00 6 5 1 0 0 0 0
.....................................................................................CTCCCTCACGGAGTCAGATTG................................................... 21 1 1 6.00 6 4 1 0 1 0 0
...................................................AATTGACTCTAGTAGGGT........................................................................................ 18 1 1 6.00 6 5 0 0 1 0 0
..................................................AAATTGACTCTAGTTGGGAGTC..................................................................................... 22 1 1 6.00 6 4 1 1 0 0 0
.....................................................................................CTCCCTAACGGAGTTAGATTG................................................... 21 1 1 6.00 6 3 3 0 0 0 0
.....................................................................................CTCCCTAACAGAGTCAGATTGA.................................................. 22 1 1 6.00 6 0 6 0 0 0 0
..................................................AAATTGACTCTAGTAGGGAGTTC.................................................................................... 23 1 1 6.00 6 3 2 1 0 0 0
...................................................GATTGACTCTAGTAGGGAGT...................................................................................... 20 1 1 6.00 6 4 0 2 0 0 0
..................................................AAATTGACTCTAGTAGGGTGTC..................................................................................... 22 1 1 6.00 6 3 3 0 0 0 0
.....................................................................................CTCCCTACCGGAGTCAGATTG................................................... 21 1 1 6.00 6 4 2 0 0 0 0
..................................................ACATTGACTCTAGTAGGGAG....................................................................................... 20 1 1 6.00 6 5 1 0 0 0 0
..................................................AAATTGACTCTAGTAGGGC........................................................................................ 19 1 1 6.00 6 6 0 0 0 0 0
.....................................................................................CTCCCTAACGGAGTCAGCTTGA.................................................. 22 1 1 6.00 6 0 6 0 0 0 0
.....................................................................................CTCCATAACGGAGTCAGATTGA.................................................. 22 1 1 6.00 6 3 3 0 0 0 0
.....................................................................................CTCCCTAACGGTGTCAGATTG................................................... 21 1 1 6.00 6 2 2 0 2 0 0
..................................................AAATTGACTCTAGTAGGGAGAC..................................................................................... 22 1 1 6.00 6 1 5 0 0 0 0
..................................................AAATTGACTATAGTAGGGAGTCT.................................................................................... 23 2 1 6.00 6 6 0 0 0 0 0
.....................................................................................CTCCTTAACGGAGTCAGATTG................................................... 21 1 1 5.00 5 3 2 0 0 0 0
..................................................AAATTGACTCTAGTAGGGAGTCTA................................................................................... 24 2 1 5.00 5 5 0 0 0 0 0
..................................................AAATTGACTCTACTAGGGAG....................................................................................... 20 1 1 5.00 5 4 1 0 0 0 0
..................................................AAATTGACTCTAGTAGGGAGTCGA................................................................................... 24 2 1 5.00 5 3 2 0 0 0 0
.....................................................................................CTCCCTAACGGAGCCAGATTGA.................................................. 22 1 1 5.00 5 1 4 0 0 0 0
.....................................................................................CGCCCTAACGGAGTCAGATTGA.................................................. 22 1 1 5.00 5 0 5 0 0 0 0
...................................................AATTGACTCTAGTATGGAGTC..................................................................................... 21 1 1 5.00 5 3 1 0 1 0 0
..................................................AAATTGACTCTAGTAGTGAGTCG.................................................................................... 23 2 1 5.00 5 4 1 0 0 0 0
.....................................................................................CTCCCTAACGGAATCAGATTG................................................... 21 1 1 5.00 5 3 2 0 0 0 0
..................................................AAATTGACTCTATTAGGGT........................................................................................ 19 2 1 5.00 5 5 0 0 0 0 0
..................................................AAATTGACTCTAATAGGGAGTC..................................................................................... 22 1 1 5.00 5 3 0 1 0 0 1
.....................................................................................CTCACTAACGGAGTCAGATTGA.................................................. 22 1 1 5.00 5 2 3 0 0 0 0
.......................................................................................CCCTAACGGAGTCAGATTGA.................................................. 20 0 1 5.00 5 2 2 0 0 0 1
.....................................................................................CTCCCTAACAGAGTCAGATTG................................................... 21 1 1 5.00 5 3 2 0 0 0 0
..................................................AAATTGACTCTAGTAGGGAGCCA.................................................................................... 23 2 1 5.00 5 3 1 0 0 1 0
....................................................ATTGACTCTAGTATGGAGT...................................................................................... 19 1 1 5.00 5 5 0 0 0 0 0
..................................................AAATTGACTCTAGTAGGGTT....................................................................................... 20 2 1 5.00 5 4 1 0 0 0 0
.....................................................................................ATCCCTAACGGAGTCAGATTGA.................................................. 22 1 1 5.00 5 4 1 0 0 0 0
..................................................AAATTGACTCTAGGAGGGAGTC..................................................................................... 22 1 1 5.00 5 3 1 0 0 1 0
..................................................AAATTGACTCCAGTAGGGAGTCA.................................................................................... 23 2 1 5.00 5 3 1 1 0 0 0
.....................................................................................CTCGCTAACGGAGTCAGATTG................................................... 21 1 1 5.00 5 5 0 0 0 0 0
..................................................AAATTGACTCTCGTAGGGAGTCA.................................................................................... 23 2 1 5.00 5 2 2 0 0 1 0
...................................................AAATGACTCTAGTAGGGAGT...................................................................................... 20 1 1 5.00 5 4 0 1 0 0 0
..................................................AAATTGACTCTAGTAGGGTA....................................................................................... 20 2 1 5.00 5 5 0 0 0 0 0
.......................................................................................CCCTAACGGAGTCAGATTG................................................... 19 0 1 5.00 5 4 0 0 1 0 0
.....................................................................................CTTCCTAACGGAGTCAGATTG................................................... 21 1 1 5.00 5 5 0 0 0 0 0
..................................................AAATTGACTCTAGTAGGGAGTCAT................................................................................... 24 1 1 5.00 5 3 1 1 0 0 0
..................................................TAATTGACTCTAGTAGGGAGTC..................................................................................... 22 1 1 5.00 5 2 0 0 0 0 3
..................................................AAATTGACTCTAGTAGGGG........................................................................................ 19 1 1 5.00 5 5 0 0 0 0 0
...................................................AATTGACTCTAGTAGTGAGT...................................................................................... 20 1 1 5.00 5 5 0 0 0 0 0
..................................................AAATTGACTCAAGTAGGGAGTC..................................................................................... 22 1 1 5.00 5 5 0 0 0 0 0
..................................................AAATTGAATCTAGTAGGGT........................................................................................ 19 2 1 5.00 5 5 0 0 0 0 0
.....................................................................................CTCCCTAACGGAGTCAAATTG................................................... 21 1 1 5.00 5 3 1 0 1 0 0
..................................................AAATTGACTCTAGTAGTGT........................................................................................ 19 2 3 5.00 15 15 0 0 0 0 0
...............................................ATCAAATTGACTCTAGTAGGGAGT...................................................................................... 24 1 1 5.00 5 4 0 1 0 0 0
.....................................................................................CTCCCTAACGGAGTCTGATTG................................................... 21 1 1 5.00 5 2 1 1 1 0 0
..................................................AAATTGACTCTAGTCGGGAGTCA.................................................................................... 23 2 1 5.00 5 4 1 0 0 0 0
.....................................................................................CTGCCTAACGGAGTCAGATTG................................................... 21 1 1 5.00 5 4 0 0 1 0 0
..................................................AGATTGACTCTAGTAGGGAGTCT.................................................................................... 23 2 1 5.00 5 1 0 1 0 0 3
.....................................................................................CTCCCTAACGGAGTCCGATTGA.................................................. 22 1 1 4.00 4 1 3 0 0 0 0
..................................................AAATTGACTCTTGTAGGGAGTC..................................................................................... 22 1 1 4.00 4 1 1 1 1 0 0
.....................................................................................CTCCCTAACGGAGTCAGATCG................................................... 21 1 1 4.00 4 2 2 0 0 0 0
....................................................ATTGACTCTAGTAGGGAGTCT.................................................................................... 21 1 1 4.00 4 1 0 1 0 0 2
..................................................AAATTTACTCTAGTAGGGAGTCG.................................................................................... 23 2 1 4.00 4 4 0 0 0 0 0
..................................................AAATTGACTCTAGTAGGGCGTCT.................................................................................... 23 2 1 4.00 4 3 1 0 0 0 0
.....................................................TTGACTCTAGTAGGGAGTC..................................................................................... 19 0 1 4.00 4 2 1 0 0 0 1
......................................................................................TCCCTAACGGAGTCAGATTGAAA................................................ 23 2 1 4.00 4 4 0 0 0 0 0
..................................................AAATTGACTCTAGTAGGGAGTTG.................................................................................... 23 2 1 4.00 4 3 0 1 0 0 0
..................................................AAATTGACTCTAGTAGGGATTCA.................................................................................... 23 2 1 4.00 4 1 3 0 0 0 0
.....................................................................................CTCCCTAACGGAGTCAGTTTGA.................................................. 22 1 1 4.00 4 0 4 0 0 0 0
.....................................................................................CTCCCTAACGGAGTCAGATTGAG................................................. 23 0 1 4.00 4 1 3 0 0 0 0

Anti-sense strand reads

TCGGTATGTAATGCGCGGAACTTCACCGCCTTGGTCAGGACCACTTCGAGTTTAACTGAGATCATCCCTCAGGAAGGTATTCGCTGAGGGATTGCCTCAGTCTAACTCGATGTTTCCTCGCTCTGTTGTGTCCACGTGAATTTTTCCACAATCGGCA

************************************.((((..((.(((((((.((((((((..((((((((((((....))).)))))))))..)))))))).))))))).)).))))...*********************************** 		Read size # Mismatch Hit Count Total Norm Total V040

embryo
...................................................................................................GTCTAACTCGATAAATCCT....................................... 19 3 20 0.05 1 1

Re-alignment of all predicted orthologs

Species Coordinate ID Type Alignment
droEre2 scaffold_4770:471012-471168 + der_6 confident AGCCATACAT------------TACGCGCCTTGAAGTGG-----CG-----------------------------GAAC--C-AGTCCTGGTGAAGCTCAAATTGACTCTAGTAGGGAGTCCTTC-CATAAGCGACTCCCTAACGGAGTCAGATTGAGCTACAAAGGAGCGAG-ACAACACAGGTGCA-CTT-----------------------------------------A---AAAAG----------GTGTTAGCCGT
droYak3 3R:481070-481229 + dya_11 confident CGCTATACAT------------TACGTGCCTTGAAATGG-----CA-----------------------------AAAC--C-AGTCCTGGTGAAGCTCAAATTGACTCTAGTAGGGAGTCCTTT-AATGAACGACTCCCTAACGGAGTCAGATTGAGCTACAAAGGAGCGAG-ACAACACAGGACCA-CTA-----------------------------------------AAAAAAAAT----------GTGTTAGCCGT
droSec2 scaffold_6:240396-240556 + dse_4 confident TGACATATAT-----GT---GATACGTGCCCTGACATGG-----CG-----------------------------CAAC--C-AGTCCTGGTGAAGCTCAAATTGACTCTAGTAGGGAGTCCTTT-AATGAGCGACTCCCTAACGGAGTCAGATTGAGCTACAAAGGAGCGAG-ACAACAGAGGAGCA-CTT-----------------------------------------A---AAAAG----------GTGTTAGCCGT
droSim2 3r:105550-105710 + dsi-mir-929 Known_mirbase TGACATATAT-----GT---GATACGTGCCCTGGCATGG-----CG-----------------------------CAAC--C-AGTCCTGGTGAAGCTCAAATTGACTCTAGTAGGGAGTCCTTT-AATGAGCGACTCCCTAACGGAGTCAGATTGAGCTACAAAGGAGCGAG-ACAACAGAGGAGCA-CTT-----------------------------------------A---AAAAG----------GTGTTAGCCGT
dm3 chr3R:121053-121213 + dme-mir-929 Known_mirbase ATCCATGTAT-----GC---AATCCATGCCCTGACATGG-----CG-----------------------------GAAC--C-AGTCCTGGTGGAGCTCAAATTGACTCTAGTAGGGAGTCCTTT-AATGAGCGACTCCCTAACGGAGTCAGATTGAGCTGCAAAGGAGCGAC-ACAACAGAGGAGCA-CTT-----------------------------------------A---AAAAT----------GTGTTAGCTGT
droEug1 scf7180000409759:55707-55872 + TGATCTATAAAATAAGTCC-----TGT-ATCTGATATAG--A-TGA-----------------------------TAAC--A-AATCCTGACGCTGTTCAAATTGACTCTAGTAGGGAGTCCTTATATCGAGCGACTCCCTAACGGAGTCAGATTGAATTTCAAAGGAGCAA--ACAACAAAGGAGCAGTTC-----------------------------------------T---TAAAA----------GTGTTATCTAA
droBia1 scf7180000302098:364489-364651 - TACCCAAGTT-----C--C-T-ATTGTCCTTTGACATAA-----CA-----------------------------GAAC--TAAGTCCTGACGCAGTTCAAATTGACTCTAGTAGGGAGTCCTTTTAATGAGCGACTCCCTAACGGAGTCAGATTGAACTTCAAAGGAGCGAG-ACAACAAAGGAGCAACTG-----------------------------------------C---CAAAA----------GTGTTAGCCAA
droTak1 scf7180000414441:35413-35576 - TGCCTTACAT-----AC-C-T-ATTGTTCCCTGACATAA-----GA-----------------------------GAAC--CAATTCCTGGCGCAGCTCAAATTGACTCTAGTAGGGAGTCCTTTCAATGAGCGACTCCCTAACGGAGTCAGATTGAACTACAAAGGACCAAG-ACAACAAAGGGAAATCTT-----------------------------------------T---AAAAA----------GTGTTAGCTGA
droEle1 scf7180000491104:1857432-1857574 + AACCGTGG--------------------------AGC-------GA-----------------------------GAAG--GACTTCCTGGCGCAGCTCAAATTGACTCTAGTAGGGAGTCCTTTTCTCGAGCGACTCCCTAACGGAGTCAGATTGAGCTTCGAAGGAGCAAG-ACATCGGG-GAGCAGCTG-----------------------------------------C---CGAAA----------GTGTTAGCCCA
droRho1 scf7180000777910:14039-14185 - AGTCTTACAT------------TACGC-----------------GA-----------------------------AAAC--GACTTCCTGCCGCAGTTCAAATTGACTCTAGTAGGGAGTCCTTTTCATGAGCGACTCCCTAACGGAGTCAGATTGATCTACAAAGGAGAGAG-ACAACAAG-GAGCAGCTG-----------------------------------------C---CAAAA----------GTGTTAGCCGA
droFic1 scf7180000454096:1242530-1242673 + AC-----------------------GCG--CCGACTTTG------A-----------------------------GAAC--GACTTCCTGACGCAGCTCAAATTGACTCTAGTAGGGAGTCCTTTTCTTGAGCGACTCCCTAACGGAGTCAGATTGAACTTCAAAGGAGCGAG-ACATCGAGGGAGCGGCTG-----------------------------------------C-----CAA----------GTGCTAGCTGA
droKik1 scf7180000302634:767724-767872 + AATCGAGAGT----------GACCCGAGCAACGCCAT----------------------------------------------GTTCCTGTCGGAGTTCAAATTGACTCTAGTAGGGAGTCCTTTGTACGAGCGACTCCCTAACGGAGTCAGATTGAATTACCAAGGAGAGAG-ACAACAGTG-AG--ATTC-----------------------------------------C---AGAGA----------GTGTTAGGCGA
droAna3 scaffold_13340:11127670-11127860 + dan_5 confident AATGTC------------CTGAAAAGTGTTCTGAGATGC-----AGCTTCCCCAGCCACCAACCAACCAACCAACCAAC--CACTTCCTGGCGCAGTTCAAATTGACTCTAGTAGGGAGTCCTTTTAACGAGAGACTCCCTAACGGAGTCAGATTGAATTACAAAGGAGCGAG-ACAACGACTACGTGGTGG-CC--------------------------------------T---AAAAA----------GTGTTAGCCTC
droBip1 scf7180000396691:36357-36542 + AGTGAGAAAA----TGTCCTGAAAAGGGTACTGAGATGC-----GGCCTTCC-------------ACCAACCCACCAAC--CACTTCCTGGCGCAGTTCAAATTGACTCTAGTAGGGAGTCCTTTTAACGAGCGACTCCCTAACGGAGTCAGATTGAATTACAAAGGAGCGAG-ACAACGACTAAGGGGTTG-CC--------------------------------------C---AAAAA----------GTGTTAGCCTT
dp5 2:24810804-24810963 - dps-mir-929 Known_mirbase GTGCATGCGC-----CC---GA-------TCCGAAGTG------C--------------------------------ACGGCAATTCCTGCAGCAGTTCAAATTGACTCTAGTAGGGAGTCCTTTTATTGAGCGACTCCCTAACGGAGTCAGATTGAATTACCAAGGAAC-AG-ACAACAGTGGAGCGAAAG-------------------------------------ACAAAGAACCGAA----------GTG-TAGTTGC
droPer2 scaffold_6:111437-111569 - dpe_8 confident GTGCATGCGC-----CC---GA-------TCCGAAGTG------C--------------------------------ACGGGATTTCCTGCAGCAGTTCAAATTGACTCTAGTAGGGAGTCCTTTTATTGAGCGACTCCCTAACGGAGTCAGATTGAATTACCAAGGAAC-AG-ACAACAGTGGAGCA---------------------------------------------------------------------------
droWil2 scf2_1100000004902:9825545-9825697 - dwi_10 confident AGCATAA----------------------TCTAAAGTGG--CTTGA-----------------------------GA-----ACTTCCTGCGGCAGTTCAAATTGACTCTAGTAGGGAGTCCTTTATATAAGCGACTCCCTAACGGAGTCAGATTGAATTACAAAGGAACAACAACAACAAAA-AGCCACGA-----------------------------------------CCCACCAAA----------GTGTTAGACCT
droVir3 scaffold_12822:1418796-1418929 + dvi-mir-929 Known_mirbase GGCCAAGTGC------------GACGCG--------------------------------------------------T--GAATTCCTGCCGCAGTTCAAATTGACTCTAGTAGGGAGTCCTTT-CACGAGCGACTCCCTAACGGAGTCAGATTGAATTACAAAGGACCCAG-ACAACGAG---------T-----------------------------------------A---AAAAT----------GTGCCAAGTGA
droMoj3 scaffold_6540:34020276-34020461 + dmo_5 confident TAT---ACGC------------TACGA-------------------------------------------------------GTTTCCTCATGCAGTTCAAATTGACTCTAGTAGGGAGTCCTTTTTTTTAACGACTCCCTAACGGAGTCAGATTGAATTTCAGAGGACCCAG-ACAACGAAGAAGCG-CGAGCACAAATGCAAATAATGGTATACAGTGGAATAAAAAATTAATAA----GTGAATCCAATTTA-CAGTGGT
droGri2 scaffold_15074:2468153-2468308 - dgr_3 confident TCCTCAATGT------------TA-----TTTGAAAGTGTGCCCCC-----------------------------GA-----ACTTCCTGCTGCAGTTCAAATTGACTCTAGTAGGGAGTCCTTTTAACGAGCGACTCCCTAACGGAGTCAGATTGAGTTACAAAGGACCAAG-TCAACAATGCCCCA-GTG-----------------------------------------A---TACAA----------GTGTTACAAAT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droEre2
AGCCATACAT------------TACGCGCCTTGAAGTGG-----CG-----------------------------GAAC--C-AGTCCTGGTGAAGCTCAAATTGACTCTAGTAGGGAGTCCTTC-CATAAGCGACTCCCTAACGGAGTCAGATTGAGCTACAAAGGAGCGAG-ACAACACAGGTGCA-CTT-----------------------------------------A---AAAAG----------GTGTTAGCCGTSizeHit CountTotal NormTotalM055

Female-body		M057

Embryo		V060

Head		V040

Embryo		V107

Male-body		V108

Head		GSM1528801

follicle cells
...................................................................................................AAATTGACTCTAGTAGGGAGT...............................................................................................................................................21155442.00554421928431354237051445570
...................................................................................................AAATTGACTCTAGTAGGGAGTC..............................................................................................................................................22117077.001707724820626932331964117330
.......................................................................................................................................CTCCCTAACGGAGTCAGATTG...........................................................................................................2116750.00675018411427714349880
...................................................................................................AAATTGACTCTAGTAGGGAGTCA.............................................................................................................................................2312769.0027694724851922419920
...................................................................................................AAATTGACTCTAGTAGGGAG................................................................................................................................................2011565.001565313234115911370
.......................................................................................................................................CTCCCTAACGGAGTCAGATTGA..........................................................................................................2211530.0015301931343611580
...................................................................................................AAATTGACTCTAGTAGGGAGTCT.............................................................................................................................................2311528.0015285116264202179600
...................................................................................................AAATTGACTCTAGTAGGGT.................................................................................................................................................1911427.001427004503413480
...................................................................................................AAATTGACTCTAGTAGGG..................................................................................................................................................181814.008144036067680
....................................................................................................AATTGACTCTAGTAGGGAGT...............................................................................................................................................201522.00522101171804130
...................................................................................................AAATTGACTCTAGTAGGGAGTCG.............................................................................................................................................231361.00361160640652160
.....................................................................................................ATTGACTCTAGTAGGGAGT...............................................................................................................................................191233.002332000182130
....................................................................................................AATTGACTCTAGTAGGGAGTC..............................................................................................................................................211231.00231233480131440
........................................................................................................................................TCCCTAACGGAGTCAGATTGA..........................................................................................................211135.00135414033840
...................................................................................................AAATTGACTCTAGTAGGGAGTCC.............................................................................................................................................231130.001304320212890
...................................................................................................AAATTGACTCTAGTAGGGAGC...............................................................................................................................................211122.001221129110890
...................................................................................................AAATTGACTCTAGTAGGGA.................................................................................................................................................191116.001163013520750
........................................................................................................................................TCCCTAACGGAGTCAGATTG...........................................................................................................20190.00902101811490
...................................................................................................AAATTGACTCTAGTAGGGAGTA..............................................................................................................................................22182.008201603720
...................................................................................................AAATTGACTCTAGTAGGGAGTT..............................................................................................................................................22170.0070001228480
..................................................................................................CAAATTGACTCTAGTAGGGAGT...............................................................................................................................................22165.006520604530
...................................................................................................AAATTGACTCTAGTAGGT..................................................................................................................................................18254.00108001011060
.................................................................................................TCAAATTGACTCTAGTAGGGAGT...............................................................................................................................................23149.004900216400
...................................................................................................AAATTGACTCTAGTAGGGAGG...............................................................................................................................................21136.003641921190
...................................................................................................AAATTGACTCTAGTAGGGAGTTT.............................................................................................................................................23135.0035302012180
...................................................................................................AAATTGACTCTAGTAGGGAGA...............................................................................................................................................21127.002710211220
.......................................................................................................................................CTCCCTAACGGAGTCAGATTT...........................................................................................................21125.002510400200
...................................................................................................AAATTGACTCTAGTAGGAGT................................................................................................................................................20224.004810305390
.......................................................................................................................................CTCCCTAACGGAGTCAGATT............................................................................................................20123.002320000210
..........................................................................................................................................CCTAACGGAGTCAGATTGA..........................................................................................................19121.002100300180
....................................................................................................AATTGACTCTAGTAGGGAG................................................................................................................................................19121.002120204130
........................................................................................................................................TCCCTAACGGAGTCAGATTGAG.........................................................................................................22120.00201092080
...........................................................................................................................................CTAACGGAGTCAGATTGA..........................................................................................................18120.002000000200
.......................................................................................................................................CTCCCTAACGGAGTCAGATTGAA.........................................................................................................23118.00182090070
...................................................................................................AAATTGACTCTAGTAGGGAGTAT.............................................................................................................................................23115.001500104100
...................................................................................................AAATTGACTCTAGTAGGGAGTTA.............................................................................................................................................23115.00150040290
.......................................................................................................................................CTCCCTAACGGAGTCAGATTGC..........................................................................................................22115.001500150000
.....................................................................................................ATTGACTCTAGTAGGGAGTC..............................................................................................................................................20115.001521100110
...................................................................................................AAATTGACTCTAGTAGGGAGTAA.............................................................................................................................................23114.001400001130
......................................................................................................TTGACTCTAGTAGGGAGT...............................................................................................................................................18113.001300000130
..................................................................................................CAAATTGACTCTAGTAGGGAGTC..............................................................................................................................................23112.00122400150
...................................................................................................AAATTGACTCTAGTAGGGAT................................................................................................................................................20112.00121010190
....................................................................................................AATTGACTCTAGTAGGGAGTCA.............................................................................................................................................22110.00105000050
.......................................................................................................................................CTCCCTAACGGAGTCAGATTGAT.........................................................................................................2319.0090050040
...................................................................................................AAATTGACTCTAGTAGGGAGTCAA............................................................................................................................................2418.0085000030
..........................................................................................................................................CCTAACGGAGTCAGATTG...........................................................................................................1818.0080010070
.....................................................................................................ATTGACTCTAGTAGGGAG................................................................................................................................................1818.0081010150
....................................................................................................AATTGACTCTAGTAGGGAGTCT.............................................................................................................................................2217.0072000230
...................................................................................................AAATTGACTCTAGTAGGGAGTG..............................................................................................................................................2217.0070030040
...................................................................................................AAATTGACTCTAGTAGGGAGTCAC............................................................................................................................................2416.0060010230
....................................................................................................AATTGACTCTAGTAGGGT.................................................................................................................................................1816.0061000050
...................................................................................................AAATTGACTCTAGTAGGGC.................................................................................................................................................1916.0060000060
...................................................................................................AAATTGACTCTAGTAGGGAGTCTA............................................................................................................................................2415.0050000050
...................................................................................................AAATTGACTCTAGTAGGGAGTCGA............................................................................................................................................2415.0050020030
.........................................................................................................................................CCCTAACGGAGTCAGATTGA..........................................................................................................2015.0050120020
...................................................................................................AAATTGACTCTAGTAGGGTT................................................................................................................................................2015.0050010040
...................................................................................................AAATTGACTCTAGTAGGGTA................................................................................................................................................2015.0050000050
.........................................................................................................................................CCCTAACGGAGTCAGATTG...........................................................................................................1915.0051000040
...................................................................................................AAATTGACTCTAGTAGGGG.................................................................................................................................................1915.0050000050
.....................................................................................................ATTGACTCTAGTAGGGAGTCT.............................................................................................................................................2114.0040200110
......................................................................................................TTGACTCTAGTAGGGAGTC..............................................................................................................................................1914.0040110020
........................................................................................................................................TCCCTAACGGAGTCAGATTGAAA........................................................................................................2314.0040000040
...................................................................................................AAATTGACTCTAGTAGGGAGTTG.............................................................................................................................................2314.0040000130
.......................................................................................................................................CTCCCTAACGGAGTCAGATTGAG.........................................................................................................2314.0040030010
droYak3
CGCTATACAT------------TACGTGCCTTGAAATGG-----CA-----------------------------AAAC--C-AGTCCTGGTGAAGCTCAAATTGACTCTAGTAGGGAGTCCTTT-AATGAACGACTCCCTAACGGAGTCAGATTGAGCTACAAAGGAGCGAG-ACAACACAGGACCA-CTA-----------------------------------------AAAAAAAAT----------GTGTTAGCCGTSizeHit CountTotal NormTotalM026

Head		M043

Female-body		M056

Embryo		V046

Embryo		V052

Head		V058

Head		V120

Male-body		SRR1275488

Male larvae		SRR1275486

Male prepupae		SRR1275484

Male prepupae		GSM1528802

follicle cells
...................................................................................................AAATTGACTCTAGTAGGGAGTC..............................................................................................................................................2219518.009518272171193264164957124560000
...................................................................................................AAATTGACTCTAGTAGGGAGT...............................................................................................................................................2118797.0087971031275635291325426718830000
.......................................................................................................................................CTCCCTAACGGAGTCAGATTG...........................................................................................................2114517.004517271803111536275280000
...................................................................................................AAATTGACTCTAGTAGGGAGTCA.............................................................................................................................................2311529.0015292571093601049420000
...................................................................................................AAATTGACTCTAGTAGGGAGTCT.............................................................................................................................................231858.0085842610010140543350000
.......................................................................................................................................CTCCCTAACGGAGTCAGATTGA..........................................................................................................221639.0063911614619540420010
...................................................................................................AAATTGACTCTAGTAGGG..................................................................................................................................................181389.00389804209021300000
...................................................................................................AAATTGACTCTAGTAGGGAG................................................................................................................................................201375.00375491121270192300000
...................................................................................................AAATTGACTCTAGTAGGGT.................................................................................................................................................191183.0018391005011490000
........................................................................................................................................TCCCTAACGGAGTCAGATTGA..........................................................................................................211161.0016119443438260000
...................................................................................................AAATTGACTCTAGTAGGGAGTCC.............................................................................................................................................231161.0016106535256930000
...................................................................................................AAATTGACTCTAGTAGGGAGTCG.............................................................................................................................................231149.001490610349990000
...................................................................................................AAATTGACTCTAGTAGGGAGC...............................................................................................................................................211125.001257085022650000
....................................................................................................AATTGACTCTAGTAGGGAGTC..............................................................................................................................................21180.008002465123300000
........................................................................................................................................TCCCTAACGGAGTCAGATTG...........................................................................................................20177.007712200223200000
...................................................................................................AAATTGACTCTAGTAGGGA.................................................................................................................................................19171.007131011024320000
...................................................................................................AAATTGACTCTAGTAGGT..................................................................................................................................................18151.00518000103300000
....................................................................................................AATTGACTCTAGTAGGGAGT...............................................................................................................................................20148.00481132271670000
.....................................................................................................ATTGACTCTAGTAGGGAGT...............................................................................................................................................19146.00461130142610000
...................................................................................................AAATTGACTCTAGTAGGGAGTTT.............................................................................................................................................23137.0037034062220000
...................................................................................................AAATTGACTCTAGTAGGGAGG...............................................................................................................................................21135.0035804211730000
...................................................................................................AAATTGACTCTAGTAGGGAGTT..............................................................................................................................................22131.0031002071930000
.....................................................................................................ATTGACTCTAGTAGGGAGTC..............................................................................................................................................20128.00281111041100000
..............................................................................C--C-AGTCCTGGTGAAGCTC....................................................................................................................................................................18127.0027250200000000
..................................................................................................CAAATTGACTCTAGTAGGGAGT...............................................................................................................................................22127.0027026111070000
.......................................................................................................................................CTCCCTAACGGAGTCAGATT............................................................................................................20126.002646106900000
..................................................................................................CAAATTGACTCTAGTAGGGAGTC..............................................................................................................................................23126.0026011921300000
...................................................................................................AAATTGACTCTAGTAGGGAGTA..............................................................................................................................................22123.0023015141200000
.......................................................................................................................................CTCCCTAACGGAGTCAGATTT...........................................................................................................21118.0018000010800000
........................................................................................................................................TCCCTAACGGAGTCAGATTGAG.........................................................................................................22117.001700304810010
...................................................................................................AAATTGACTCTAGTAGGGAGA...............................................................................................................................................21116.001610026700000
............................................................................AAC--C-AGTCCTGGTGAAGCTC....................................................................................................................................................................20115.001560701100000
.................................................................................................TCAAATTGACTCTAGTAGGGAGT...............................................................................................................................................23115.001500201750000
...................................................................................................AAATTGACTCTAGTAGGGAGTG..............................................................................................................................................22113.001300028300000
.......................................................................................................................................CTCCCTAACGGAGTCAGATTGC..........................................................................................................22112.0012000001200000
....................................................................................................AATTGACTCTAGTAGGGAGTCC.............................................................................................................................................22111.001100101900000
....................................................................................................AATTGACTCTAGTAGGGAGTCA.............................................................................................................................................22111.001108001200000
......................................................................................................................................ACTCCCTAACGGAGTCAGATTGA..........................................................................................................2319.00900231300000
.......................................................................................................................................CTCCCTAACGGAGTCAGATTGT..........................................................................................................2219.00900000900000
...................................................................................................AAATTGACTCTAGTAGGGAGTTA.............................................................................................................................................2318.00800003500000
.......................................................................................................................................CTCCCTAACGGAGTCAGATTGAA.........................................................................................................2316.00601111200000
.......................................................................................................................................CTCCCTAACGGAGTCAGAT.............................................................................................................1916.00650100000000
....................................................................................................AATTGACTCTAGTAGGGAG................................................................................................................................................1915.00511001200000
...................................................................................................AAATTGACTCTAGTAGG...................................................................................................................................................1715.00500000500000
...................................................................................................AAATTGACTCTAGTAGGGAGTTG.............................................................................................................................................2315.00510001210000
....................................................................................................AATTGACTCTAGTAGGGAGTCT.............................................................................................................................................2215.00501300010000
.......................................................................................................................................CTCCCTAACGGAGTCAGATTC...........................................................................................................2115.00500000500000
......................................................................................................................................ACTCCCTAACGGAGTCAGATTG...........................................................................................................2215.00504000100000
...................................................................................................AAATTGACTCTAGTAGGGC.................................................................................................................................................1915.00520001200000
...................................................................................................AAATTGACTCTAGTAGGGAGTAT.............................................................................................................................................2314.00400000310000
.......................................................................................................................................CTCCCTAACGGAGTCAGATTGAT.........................................................................................................2314.00400003100000
...................................................................................................AAATTGACTCTAGTAGGGG.................................................................................................................................................1914.00410000300000
...................................................................................................AAATTGACTCTAGTAGGGAGCT..............................................................................................................................................2214.00400000400000
..........................................................................................................................................CCTAACGGAGTCAGATTG...........................................................................................................1814.00400001300000
...................................................................................................AAATTGACTCTAGTAGGGAGTGT.............................................................................................................................................2314.00401000300000
...........................................................................................................................................CTAACGGAGTCAGATTGA..........................................................................................................1814.00420001100000
.............................................................................AC--C-AGTCCTGGTGAAGCTC....................................................................................................................................................................1914.00410300000000
........................................................................................................................................TCCCTAACGGAGTCAGATTGAGT........................................................................................................2313.00310000200000
.....................................................................................................ATTGACTCTAGTAGGGAG................................................................................................................................................1813.00310100100000
...................................................................................................AAATTGACTCTAGTAGGTT.................................................................................................................................................1913.00300000300000
droSec2
TGACATATAT-----GT---GATACGTGCCCTGACATGG-----CG-----------------------------CAAC--C-AGTCCTGGTGAAGCTCAAATTGACTCTAGTAGGGAGTCCTTT-AATGAGCGACTCCCTAACGGAGTCAGATTGAGCTACAAAGGAGCGAG-ACAACAGAGGAGCA-CTT-----------------------------------------A---AAAAG----------GTGTTAGCCGTSizeHit CountTotal NormTotalM054

Female-body		V113

Male-body		V114

Embryo		V115

Head
...................................................................................................AAATTGACTCTAGTAGGGAGT...............................................................................................................................................211112939.0011293914612438375596600
...................................................................................................AAATTGACTCTAGTAGGGAGTC..............................................................................................................................................22113992.0013992112119042428448
...................................................................................................AAATTGACTCTAGTAGGGT.................................................................................................................................................1917088.00708814177039
.......................................................................................................................................CTCCCTAACGGAGTCAGATTG...........................................................................................................2115632.005632145401205327
....................................................................................................AATTGACTCTAGTAGGGAGT...............................................................................................................................................2015145.00514514469774585
...................................................................................................AAATTGACTCTAGTAGGGAGTCT.............................................................................................................................................2311437.00143725151447814
...................................................................................................AAATTGACTCTAGTAGGGAGTCA.............................................................................................................................................2311319.001319101101431056
...................................................................................................AAATTGACTCTAGTAGGGAG................................................................................................................................................201776.00776209813645
...................................................................................................AAATTGACTCTAGTAGGT..................................................................................................................................................181478.00478001477
....................................................................................................AATTGACTCTAGTAGGGAGTC..............................................................................................................................................211442.00442218132281
..................................................................................................CAAATTGACTCTAGTAGGGAGT...............................................................................................................................................221314.0031442717266
...................................................................................................AAATTGACTCTAGTAGGG..................................................................................................................................................181281.00281206273
.....................................................................................................ATTGACTCTAGTAGGGAGT...............................................................................................................................................191274.002742521246
...................................................................................................AAATTGACTCTAGTAGGGA.................................................................................................................................................191210.002108305167
...................................................................................................AAATTGACTCTAGTAGGGAGTCC.............................................................................................................................................231186.0018642157104
...................................................................................................AAATTGACTCTAGTAGGGAGC...............................................................................................................................................211180.001800206154
.......................................................................................................................................CTCCCTAACGGAGTCAGATTGA..........................................................................................................221145.001452226358
........................................................................................................................................TCCCTAACGGAGTCAGATTGA..........................................................................................................21198.009851488
...................................................................................................AAATTGACTCTAGTAGGGC.................................................................................................................................................19188.008800088
........................................................................................................................................TCCCTAACGGAGTCAGATTG...........................................................................................................20187.008763276
...................................................................................................AAATTGACTCTAGTAGGGAGA...............................................................................................................................................21181.008116074
...................................................................................................AAATTGACTCTAGTAGGGAGTCG.............................................................................................................................................23177.0077710951
...................................................................................................AAATTGACTCTAGTAGGGAGTT..............................................................................................................................................22176.0076417253
...................................................................................................AAATTGACTCTAGTAGGGGT................................................................................................................................................20160.006000060
...................................................................................................AAATTGACTCTAGTAGGGAGTTT.............................................................................................................................................23155.0055110341
.................................................................................................TCAAATTGACTCTAGTAGGGAGT...............................................................................................................................................23149.004904936
........................................................................................................................................TCCCTAACGGAGTCAGATTGAG.........................................................................................................22145.0045121329
...................................................................................................AAATTGACTCTAGTAGGGAGG...............................................................................................................................................21137.003735128
.......................................................................................................................................CTCCCTAACGGAGTCAGATT............................................................................................................20125.002560019
...................................................................................................AAATTGACTCTAGTAGGGAGTA..............................................................................................................................................22121.002111217
......................................................................................................TTGACTCTAGTAGGGAGT...............................................................................................................................................18119.001900217
....................................................................................................AATTGACTCTAGTAGGGAG................................................................................................................................................19117.001741012
...................................................................................................AAATTGACTCTAGTAGGGTT................................................................................................................................................20117.001700017
.....................................................................................................ATTGACTCTAGTAGGGAGTC..............................................................................................................................................20116.001630103
..................................................................................................CAAATTGACTCTAGTAGGGAGTC..............................................................................................................................................23116.001620410
....................................................................................................AATTGACTCTAGTAGGGT.................................................................................................................................................18115.001500015
...................................................................................................AAATTGACTCTAGTAGGGG.................................................................................................................................................19114.001400014
...................................................................................................AAATTGACTCTAGTAGGAGT................................................................................................................................................201012.201220123107
....................................................................................................AATTGACTCTAGTAGGGAGTCT.............................................................................................................................................22112.00120165
...................................................................................................AAATTGACTCTAGTAGGGAGTTA.............................................................................................................................................23112.00121227
....................................................................................................AATTGACTCTAGTAGGGAGA...............................................................................................................................................20111.001101010
...................................................................................................AAATTGACTCTAGTAGGGAT................................................................................................................................................20111.001101010
...................................................................................................AAATTGACTCTAGTAGGTT.................................................................................................................................................1929.001800018
...................................................................................................AAATTGACTCTAGTAGGGAA................................................................................................................................................2019.0090108
.......................................................................................................................................CTCCCTAACGGAGTCAGATTGAA.........................................................................................................2318.0080017
.......................................................................................................................................CTCCCTAACGGAGTCAGATTGT..........................................................................................................2218.0080107
...................................................................................................AAATTGACTCTAGTAGGGAGTCTA............................................................................................................................................2418.0080008
..........................................................................................................................................CCTAACGGAGTCAGATTG...........................................................................................................1817.0072005
....................................................................................................AATTGACTCTAGTAGGGAGC...............................................................................................................................................2017.0070106
....................................................................................................AATTGACTCTAGTAGGGAGTCC.............................................................................................................................................2217.0071204
...................................................................................................AAATTGACTCTAGTAGGGTA................................................................................................................................................2017.0070007
....................................................................................................AATTGACTCTAGTAGGGAGTCA.............................................................................................................................................2217.0070025
.......................................................................................................................................CTCCCTAACGGAGTCAGATTA...........................................................................................................2116.0060006
..................................................................................................CAAATTGACTCTAGTAGGGT.................................................................................................................................................2016.0060006
...................................................................................................AAATTGACTCTAGTAGGAT.................................................................................................................................................1915.0050005
..................................................................................................CAAATTGACTCTAGTAGGGAG................................................................................................................................................2115.0050104
.......................................................................................................................................CTCCCTAACGGAGTCAGATTGAG.........................................................................................................2315.0050023
...................................................................................................AAATTGACTCTAGTAGGA..................................................................................................................................................1815.0050005
...........................................................................................................................................CTAACGGAGTCAGATTGA..........................................................................................................1814.0040004
.......................................................................................................................................CTCCCTAACGGAGTCAGATTGAT.........................................................................................................2314.0040004
..........................................................................................................................................CCTAACGGAGTCAGATTGA..........................................................................................................1914.0040013
........................................................................................................................................TCCCTAACGGAGTCAGATTGAGT........................................................................................................2313.0030012
..................................................................................................CAAATTGACTCTAGTAGGGA.................................................................................................................................................2013.0031101
...................................................................................................AAATTGACTCTAGTAGGGAGAT..............................................................................................................................................2213.0031002
.......................................................................................................................................CTCCCTAACGGAGTCAGATTT...........................................................................................................2113.0030003
.......................................................................................................................................CTCCCTAACGGAGTCAGATTGC..........................................................................................................2213.0030012
droSim2
TGACATATAT-----GT---GATACGTGCCCTGGCATGG-----CG-----------------------------CAAC--C-AGTCCTGGTGAAGCTCAAATTGACTCTAGTAGGGAGTCCTTT-AATGAGCGACTCCCTAACGGAGTCAGATTGAGCTACAAAGGAGCGAG-ACAACAGAGGAGCA-CTT-----------------------------------------A---AAAAG----------GTGTTAGCCGTSizeHit CountTotal NormTotalM023

Head		M024

Male-body		M025

Embryo		M053

Female-body		O001

Testis		O002

Head		SRR553485

Ovary		SRR553486

Ovary		SRR553487

Ovary		SRR553488

Ovary		SRR618934

Ovary		V044

Embryo		SRR902008

Ovary		SRR902009

Testis		SRR1275487

Male larvae		SRR1275485

Male prepupae		SRR1275483

Male prepupae
...................................................................................................AAATTGACTCTAGTAGGGAGT...............................................................................................................................................2111764.001764699351951013113210883200000
...................................................................................................AAATTGACTCTAGTAGGGAG................................................................................................................................................201791.00791651305658710102102000
...................................................................................................AAATTGACTCTAGTAGGGAGTC..............................................................................................................................................221744.007442025175001201346938100000
.......................................................................................................................................CTCCCTAACGGAGTCAGATTG...........................................................................................................211369.0036915402274168000001300001
...................................................................................................AAATTGACTCTAGTAGGG..................................................................................................................................................181224.0022419326012010100000000
...................................................................................................AAATTGACTCTAGTAGGGA.................................................................................................................................................19192.00923820233921121100000
...................................................................................................AAATTGACTCTAGTAGGGAGTCT.............................................................................................................................................23173.00735006000023273000000
.......................................................................................................................................CTCCCTAACGGAGTCAGATT............................................................................................................20162.00623710122100000000000
...................................................................................................AAATTGACTCTAGTAGGGAGG...............................................................................................................................................21161.0061505210000000300000
..............................................................................C--C-AGTCCTGGTGAAGCTC....................................................................................................................................................................18153.0053462500000000000000
...................................................................................................AAATTGACTCTAGTAGGT..................................................................................................................................................18142.0042420000000000000000
...................................................................................................AAATTGACTCTAGTAGGGAT................................................................................................................................................20141.0041401000000000000000
.......................................................................................................................................CTCCCTAACGGAGTCAGAT.............................................................................................................19138.0038271002800000000000
...................................................................................................AAATTGACTCTAGTAGGGAC................................................................................................................................................20134.0034340000000000000000
...................................................................................................AAATTGACTCTAGTAGGGAGC...............................................................................................................................................21134.0034322000000000000000
........................................................................................................................................TCCCTAACGGAGTCAGATTGA..........................................................................................................21133.0033230100401200101000
.......................................................................................................................................CTCCCTAACGGAGTCAGATTGA..........................................................................................................22130.003090122900120400000
...................................................................................................AAATTGACTCTAGTAGGGAGTCA.............................................................................................................................................23129.0029001500202210700000
...................................................................................................AAATTGACTCTAGTAGGGT.................................................................................................................................................19125.0025240010000000000000
.......................................................................................................................................CTCCCTAACGGAGTCAGA..............................................................................................................18124.0024000002400000000000
....................................................................................................AATTGACTCTAGTAGGGAGT...............................................................................................................................................20123.0023151030200000200000
...................................................................................................AAATTGACTCTAGTAGGGC.................................................................................................................................................19119.0019181000000000000000
....................................................................................................AATTGACTCTAGTAGGGAG................................................................................................................................................19117.0017131000300000000000
............................................................................AAC--C-AGTCCTGGTGAAGCTC....................................................................................................................................................................20116.0016160000000000000000
....................................................................................................AATTGACTCTAGTAGGGAGTC..............................................................................................................................................21111.001130020000004200000
.....................................................................................................ATTGACTCTAGTAGGGAGTC..............................................................................................................................................20111.0011110000000000000000
..................................................................................................CAAATTGACTCTAGTAGGG..................................................................................................................................................19110.001081000100000000000
...........................................................................................................................................CTAACGGAGTCAGATTGA..........................................................................................................18110.001090000000000100000
...................................................................................................AAATTGACTCTAGTAGGC..................................................................................................................................................1819.00990000000000000000
.....................................................................................................ATTGACTCTAGTAGGGAGT...............................................................................................................................................1919.00990000000000000000
........................................................................................................................................TCCCTAACGGAGTCAGATTGAG.........................................................................................................2219.00922010100010200000
...................................................................................................AAATTGACTCTAGTAGGGAGA...............................................................................................................................................2119.00990000000000000000
........................................................................................................................................TCCCTAACGGAGTCAGATTGAGT........................................................................................................2317.00730310000000000000
...................................................................................................AAATTGACTCTAGTAGGGAGTCC.............................................................................................................................................2317.00700010100004100000
...................................................................................................AAATTGACTCTAGTAGGGAA................................................................................................................................................2016.00660000000000000000
...........................................................................CAAC--C-AGTCCTGGTGAAGCTC....................................................................................................................................................................2116.00650000100000000000
..................................................................................................CAAATTGACTCTAGTAGGGAG................................................................................................................................................2115.00530000200000000000
..................................................................................................CAAATTGACTCTAGTAGGGA.................................................................................................................................................2015.00500000500000000000
..................................................................................................CAAATTGACTCTAGTAGGGAGT...............................................................................................................................................2214.00400020000200000000
..................................................................................................CAAATTGACTCTAGTAGG...................................................................................................................................................1814.00430000000100000000
...................................................................................................AAATTGACTCTAGTAGGGTTG...............................................................................................................................................2114.00440000000000000000
...................................................................................................AAATTGACTCTAGTAGGA..................................................................................................................................................1814.00440000000000000000
........................................................................................................................................TCCCTAACGGAGTCAGATTG...........................................................................................................2014.00410000300000000000
.......................................................................................................................................CTCCCTAACGGAGTCAGATTGAA.........................................................................................................2313.00320000000100000000
...................................................................................................AAATTGACTCTAGTAGGGAGTCG.............................................................................................................................................2313.00300020000001000000
........................................................................................................................................TCCCTAACGGAGTCAGATTGAA.........................................................................................................2213.00310000000020000000
...................................................................................................AAATTGACTCTAGTAGGGCT................................................................................................................................................2013.00330000000000000000
..........................................................................................................................................CCTAACGGAGTCAGATTGA..........................................................................................................1913.00321000000000000000
......................................................................................................TTGACTCTAGTAGGGAGTC..............................................................................................................................................1913.00330000000000000000
.....................................................................................................ATTGACTCTAGTAGGGAG................................................................................................................................................1813.00330000000000000000
...................................................................................................AAATTGACTCTAGTAGGGAGTTT.............................................................................................................................................2313.00320000000001000000
........................................................................................................................................TCCCTAACGGAGTCAGATTGAGC........................................................................................................2312.00210000100000000000
.......................................................................................................TGACTCTAGTAGGGAGTC..............................................................................................................................................1812.00210000000001000000
........................................................................................................................................TCCCTAACGGAGTCAGATT............................................................................................................1912.00210000100000000000
...................................................................................................AAATTGACTCTAGTAGGGG.................................................................................................................................................1912.00220000000000000000
...................................................................................................AAATTGACTCTAGTAGGGATA...............................................................................................................................................2112.00220000000000000000
....................................................................................................AATTGACTCTAGTAGGGAGTCT.............................................................................................................................................2212.00200000000101000000
.........................................................................................................................................CCCTAACGGAGTCAGATTGA..........................................................................................................2012.00220000000000000000
.............................................................................AC--C-AGTCCTGGTGAAGCTC....................................................................................................................................................................1912.00220000000000000000
...................................................................................................AAATTGACTCTAGTAGGAT.................................................................................................................................................1922.00440000000000000000
........................................................................................................................................TCCCTAACGGAGTCAGATTGAAA........................................................................................................2312.00200200000000000000
....................................................................................................AATTGACTCTAGTAGGGA.................................................................................................................................................1812.00210000100000000000
...........................................................................................................................................CTAACGGAGTCAGATTGAA.........................................................................................................1912.00220000000000000000
........................................................................................................................................TCCCTAACGGAGTCAGAT.............................................................................................................1812.00210000100000000000
....................................................................................................AATTGACTCTAGTAGGGT.................................................................................................................................................1811.00110000000000000000
....................................................................................................AATTGACTCTAGTAGGGAT................................................................................................................................................1911.00110000000000000000
.....................................................................................................ATTGACTCTAGTAGGGAGG...............................................................................................................................................1911.00110000000000000000
.........................................................................................................................................CCCTAACGGAGTCAGATTG...........................................................................................................1911.00100000100000000000
........................................................................................................................................TCCCTAACGGAGTCAGATTGAGA........................................................................................................2311.00101000000000000000
.........................................................................................................................................CCCTAACGGAGTCAGATTGG..........................................................................................................2011.00110000000000000000
....................................................................................................AATTGACTCTAGTAGGGAGG...............................................................................................................................................2011.00110000000000000000
...................................................................................................AAATTGACTCTAGTAGGGAGTG..............................................................................................................................................2211.00100000000000100000
..................................................................................................CAAATTGACTCTAGTAGGGAT................................................................................................................................................2111.00110000000000000000
.......................................................................................................................................CTCCCTAACGGAGTCAGAC.............................................................................................................1911.00110000000000000000
...................................................................................................AAATTGACTCTAGTAGGGAAA...............................................................................................................................................2111.00110000000000000000
.....................................................................................................ATTGACTCTAGTAGGGAGC...............................................................................................................................................1911.00110000000000000000
.................................................................................................TCAAATTGACTCTAGTAGGGAGT...............................................................................................................................................2311.00100000000000100000
..................................................................................................CAAATTGACTCTAGTAGGGAC................................................................................................................................................2111.00110000000000000000
...................................................................................................AAATTGACTCTAGTAGGGAGTAA.............................................................................................................................................2311.00101000000000000000
.......................................................................................................................................CTCCCTAACGGAGTCAGATTGAGT........................................................................................................2411.00100000000000100000
...................................................................................................AAATTGACTCTAGTAGGTC.................................................................................................................................................1911.00110000000000000000
........................................................................................................GACTCTAGTAGGGAGT...............................................................................................................................................1611.00100000000001000000
....................................................................................................AATTGACTCTAGTAGGGAGTCC.............................................................................................................................................2211.00100000100000000000
....................................................................................................AATTGACTCTAGTAGGGAGA...............................................................................................................................................2011.00110000000000000000
...................................................................................................AAATTGACTCTAGTAGGGAAG...............................................................................................................................................2111.00110000000000000000
.............................................G-----------------------------CAAC--C-AGTCCTGGTGAAGC......................................................................................................................................................................2011.00100000100000000000
.........................................................................................................ACTCTAGTAGGGAGT...............................................................................................................................................1511.00100000000001000000
...................................................................................................AAATTGACTCTAGTAGGGATG...............................................................................................................................................2111.00110000000000000000
..........................................................................................................................................CCTAACGGAGTCAGATTG...........................................................................................................1811.00110000000000000000
...................................................................................................AAATTGACTCTAGTAGGGAGTT..............................................................................................................................................2211.00100000010000000000
....................................................................................................AATTGACTCTAGTAGGGG.................................................................................................................................................1811.00101000000000000000
........................................................................................................................................TCCCTAACGGAGTCAGATTGT..........................................................................................................2111.00110000000000000000
.......................................................................................................................................CTCCCTAACGGAGTCAGATTT...........................................................................................................2111.00100000000000100000
.........................................................................................................................................CCCTAACGGAGTCAGATTGAGC........................................................................................................2211.00100100000000000000
.......................................................................................................................................CTCCCTAACGGAGTCAGATTGT..........................................................................................................2211.00110000000000000000
....................................................................................................AATTGACTCTAGTAGGGAGC...............................................................................................................................................2011.00110000000000000000
.......................................................................................................................................CTCCCTAACGGAGTCAGATTGAG.........................................................................................................2311.00100000000000100000
...................................................................................................AAATTGACTCTAGTAGGGAGTCTC............................................................................................................................................2411.00100000000000001000
.............................................G-----------------------------CAAC--C-AGTCCTGGTGAAGCTC....................................................................................................................................................................2211.00110000000000000000
......................................................................................................TTGACTCTAGTAGGGAGG...............................................................................................................................................1811.00110000000000000000
dm3
ATCCATGTAT-----GC---AATCCATGCCCTGACATGG-----CG-----------------------------GAAC--C-AGTCCTGGTGGAGCTCAAATTGACTCTAGTAGGGAGTCCTTT-AATGAGCGACTCCCTAACGGAGTCAGATTGAGCTGCAAAGGAGCGAC-ACAACAGAGGAGCA-CTT-----------------------------------------A---AAAAT----------GTGTTAGCTGTSizeHit CountTotal NormTotalGSM154618

Ovary		GSM154620

Ovary		GSM154621

Ovary		GSM154622

Ovary		GSM180328

Head		GSM180329

Mixed-body		GSM180330

Embryo		GSM180331

Embryo		GSM180332

Embryo		GSM180333

Embryo		GSM180334

Larvae		GSM180335

Disc		GSM180336

Pupae		GSM180337

S2		GSM239041

Head		GSM239050

Head		GSM239051

S2		GSM239052

S2		GSM246084

Head		GSM266765

S2		GSM280082

Ovary		GSM280083

Ovary		GSM280084

Ovary		GSM280085

Testis		GSM280086

Ovary		GSM280087

S2-NP		GSM280088

S2-NP		GSM312995

Head		GSM313160

Head		GSM313161

Head		GSM313162

Head		GSM313163

Head		GSM313164

Head		GSM313165

Head		GSM343287

Embryo		GSM379050

Ovary		GSM379051

Ovary		GSM379052

Ovary		GSM379053

Ovary		GSM379054

Ovary		GSM379055

Ovary		GSM379056

Ovary		GSM379057

Ovary		GSM379058

Ovary		GSM379059

Ovary		GSM379060

Ovary		GSM379061

Ovary		GSM379062

Ovary		GSM379063

Ovary		GSM379064

Ovary		GSM379065

Ovary		GSM379066

Ovary		GSM379067

Ovary		GSM424739

S2		GSM424740

S2		GSM424741

S2		GSM467729

Female-body		GSM467730

Female-body		GSM467731

Female-body		M002

CS		M003

Male-body		M004

Male-body		M005

ML-DmD32		M006

ML-DmD32		M029

OSC		M030

OSC		M031

OSC		M032

S2-R+		M033

S2-R+		M034

S2-R+		M035

S2-R+		M036

S2-R+		M037

S2-R+		M038

S2-R+		M039

S2-R+		M048

S2-R+		OSS2

OSS		OSS6

OSS		OSS7

OSS		OSS8

OSS		S1

Head		S10

Embryo		S11

Embryo		S12

Embryo		S13

Embryo		S14

Embryo		S15

S2-GMR		S16

Kc		S17

Larvae		S18

Larvae		S19

Pupae		S2

Head		S20

Pupae		S21

Disc		S22

Head		S23

Female-body		S24

Male-body		S25

Larvae		S26

Larvae		S27

Pupae		S28

Pupae		S29

Head		S3

Male-body		S30

S2-GMR		S31

S2		S32

S2		S33

Kc		S34

Kc		S35

Kc		S4

Female-body		S5

Disc		S6

Embryo		S7

Embryo		S8

S2		S9

Embryo		SRR001337

Head		SRR001338

Head		SRR001339

Head		SRR001340

Head		SRR001341

Head		SRR001342

Head		SRR001343

Head		SRR001344

Head		SRR001345

Head		SRR001346

Head		SRR001347

Head		SRR001348

Head		SRR001349

Head		SRR001664

Head		SRR010951

Ovary		SRR010952

Ovary		SRR010953

Ovary		SRR010954

Ovary		SRR010955

Ovary		SRR010956

Ovary		SRR010957

Ovary		SRR010958

Ovary		SRR010959

Ovary		SRR010960

Ovary		SRR014268

Embryo		SRR014269

Embryo		SRR014270

Embryo		SRR014271

Embryo		SRR014272

Embryo		SRR014273

Ovary		SRR014274

Ovary		SRR014275

Ovary		SRR014276

Ovary		SRR014277

Ovary		SRR014278

Ovary		SRR014279

Ovary		SRR014280

Ovary		SRR014281

Ovary		SRR014282

Ovary		SRR023197

S2		SRR023399

S2		SRR023400

S2		SRR023402

S2		SRR023407

S2		SRR029028

S2		SRR029029

S2		SRR029030

S2		SRR029031

S2		SRR029032

S2		SRR029033

S2		SRR029608

Head		SRR029633

Head		SRR030145

gb3		SRR031692

Head		SRR031693

Head		SRR031694

Head		SRR031696

Head		SRR031697

Head		SRR031698

Head		SRR031699

Head		SRR031700

Head		SRR031701

Head		SRR031702

Head		SRR031703

Head		SRR031704

Head		SRR032092

S2		SRR032093

S2		SRR032094

S2		SRR032095

S2-NP		SRR032096

S2-NP		SRR032152

Head		SRR060643

Testis		SRR060644

Ovary		SRR060645

Testis		SRR060646

Ovary		SRR060647

Ovary		SRR060648

Ovary		SRR060649

Ovary		SRR060650

Testis		SRR060651

Ovary		SRR060652

Testis		SRR060653

Ovary		SRR065151

Ovary		SRR065152

Ovary		SRR065153

Ovary		SRR065154

Ovary		SRR065155

Ovary		SRR065800

Ovary		SRR065801

Ovary		SRR065802

Ovary		SRR065803

Ovary		SRR065804

Ovary		SRR065805

Ovary		SRR065806

Ovary		SRR065807

Ovary		SRR097865

S2-NP		SRR097866

S2-NP		SRR097867

S2-NP		SRR298536

Ovary		SRR298537

Ovary		SRR298711

Ovary		SRR298712

Ovary		SRR317110

Ovary		SRR317111

Ovary		SRR317112

Ovary		SRR317113

Ovary		SRR317114

Ovary		SRR317115

Ovary		SRR317116

Ovary		SRR317117

Ovary		SRR341115

S2		SRR341116

S2		SRR341117

S2		SRR341118

S2		SRR351332

Mixed-body		SRR351333

Mixed-body		T004

OSC		T005

CME-L1		V001

Embryo		V002

Embryo		V003

S2		V006

Female-body		V007

Head		V008

S2		V009

CME-L1		V010

ML-DmD20-C5		V011

Sg4		V012

Male-body		V013

Head		V014

DTT		V015

DreRFHV		V018

Kc167		V019

GM2		V020

S2-R+		V021

ML-DmD21		V022

ML-DmD32		V023

Head		V024

Kc167		V025

S2-R+		V026

1182-2H		V027

ML-DmD21		V028

CME-W1-Cl.8+		V029

ML-DmD9		V030

ML-DmD8		V031

GM2		V032

S1		V033

CME-W1-Cl.8+		V034

ML-DmD16-C3		V035

ML-DmD32		V036

ML-DmD20-C5		V037

S2		V038

S2		V063

Ovary		V0632

Ovary		V064

Ovary		V0642

Ovary		V065

Ovary		V0652

Ovary		V066

Ovary		V0662

Ovary		V067

S2-NP		V073

mbn2		V074

S3		V075

ML-DmBG1-C1		V076

ML-DmBG3-C2		V077

Head		V078

Head		V079

Head		V080

Head		V081

Embryo		V082

Embryo		V083

Male-body		V084

Female-body		V085

CME-W2		V086

Female-body		V088

Ovary		V0882

Ovary		V089

Ovary		V0892

Ovary		V090

Male-body		V091

fGS/OSS		V092

Male-body		V093

Male-body		V094

S2-R+		V095

S2-R+		V096

Ovary		V097

Ovary		V098

Ovary		V125

ML-DmD9		V126

CME-L1		V127

G2		V128

S3		V129

ML-DmBG1-C1		V130

ML-DmBG3-C2		V131

ML-DmD16-C3		V132

ML-DmD32		V133

Sg4		V134

ML-DmD8		V135

CME-W2		V136

Male-body		V137

Head		V138

Male-body		V139

Female-body		V140

Female-body		V141

Female-body		V142

Female-body		V144

OSC		V145

S2		V146

S1		V147

1182-2H		V148

mbn2		GSM1528798

follicle cells
...................................................................................................AAATTGACTCTAGTAGGGAGT...............................................................................................................................................211991581.0099158100001000000000120400541800100322218867854765226190366626129591144813984182430831216000110000000000000000001020410000010018103316002274000000000000313412421125234341166112101500000010007914293813934503952360042343214000001845110294317110249465249406809767598110276233391164157128128211759157472900100527622000002483100340073120442102646109411751611694911033003010044435914716613524131327340525901194416293816247881922421871059547778841721830181112802811075959722371441693371036284827723772743125132028924296182542842541923835660532113738971304851274101405416952184618410136920671031472212548150863631728866556451088914266177153616532694112555556616351374852962724842979174126706021800
...................................................................................................AAATTGACTCTAGTAGGGAGTC..............................................................................................................................................221142586.0014258600005000000100300220661000321586312941258143813701627131525121621611277947371012000000000000000000000001102950010000004124036001081921200001110300112210350372313752029000000000050820021321183615153610181240000080005088295805631599740116703251371333821155643723200011122228151710038054500000354800200187470348408404142083002182000111400192614854215143156114482936311545359688091822198891602402444156884521750464342411165523158442481312252017255351461328079494510648120672831081488855850185651853916661676258661467046059246149729516039856147321602163101129532560121899252075139812933911689103200
.......................................................................................................................................CTCCCTAACGGAGTCAGATTG...........................................................................................................21143028.004302800007320001023030023000130113618195394476401000000101000011110003712130000000000000000032101012000000431817901759221411012141376101560374547424248161701110222371258340000001000201000000011000000000005000406366017712734252622583212001041529000001163100000010000000000000000002382000100105000000004842016620075954526426171202382160284791227424512124858442021616294732107062402150835618848421192209815011033451533021132401319163282651310613201105407149634032400
...................................................................................................AAATTGACTCTAGTAGGGAG................................................................................................................................................20125804.002580400002000000000011010110103017361061381759511301051301314112300000000000000000000000000001200000000015011308000083100000001010062073121501652502322016000000000011100224151950402000002000004362168028644201762171281543931524054141000005283614000002102200000007001000600418514399032171101720030000342012617996921183151861532051951771020201260411294111712717837315326981061148118910321631178377225024211261118492329609127884641021472107863155103780741421290921951931734860210820
...................................................................................................AAATTGACTCTAGTAGGGT.................................................................................................................................................19116051.00160510000000000000000000000000000000000000000100000100100000000000000000000000000000000000000000000000000000000000000000157040000010000000000000000001010020000100000000000317301337310135009231360110000030000000000000000000000000001213000000010000000001114610103196015110000090010000000000000000000009012962334437150093012000118240780000315035227253311068911850307978810514013019000
....................................................................................................AATTGACTCTAGTAGGGAGT...............................................................................................................................................20114181.0014181000001000000000100000000052703218121000000000021010010000000010000000000000000000000000000000000030000000000000000000002603010000000000000000020000110003410010000010000072606278716361838116000011192221000103000000000000008135212910000100010000000031544054711413901558121448114212531101117128052021220180532134857307343367486123412903315271078015418897481914162067731382893342420061052557474771333473142534531871240
.......................................................................................................................................CTCCCTAACGGAGTCAGATTGA..........................................................................................................22113456.001345600001810003032000011000000101622335451510000000210000001200000000000000000000000006524300002001212105351410518664369994424015003214142113706264290672811984920617100000000003010001000200000000000000003112245402083419356825366810121853000003130010000000000000000000000011295100120002000000002245000301073546012420200265131001002030012000000000014031524595803511300000061310000000101010000001722110000000
..................................................................................................CAAATTGACTCTAGTAGGGAGT...............................................................................................................................................22112165.0012165000020000000000600000000040186585861683142201100010001011100000000000000000000000000000001000000000020160100202310030000000001310702411001410000000000100000000015000000000000100826009141220119966717711874070000061010000001000000000020000200912001200030000000081052521004102023580112132111210001001010000000000127410256219314344016291609010011154524251000045121098636151177034056383679518618320129541500
...................................................................................................AAATTGACTCTAGTAGGGAGTCA.............................................................................................................................................23111505.00115050000000001000000000000600600000000012100413062210132000000000000000000000000000000000000000001310000019000000000000006810003150192192000000000003120002504141000000000000080531428031822470462193176371567720000001300001000020530000005000000000111331160043000100013300100922341487000931960691001118916000010051740002300211036003015196115179656145144501224513195214922103114140101010213107811889829694250004010
...................................................................................................AAATTGACTCTAGTAGGGAGTCT.............................................................................................................................................2319059.0090590000000000000000000002200000000000022212127170001242000000000000000000000000000010000000001300502100035000000010000002900001110801012000000000050300252261380000000000000003082520203302772364116226124726006007375130000504000000530000001005134158004140004000000002162090109340003585127600005721000000031110100328112116313001109386513344583849518172031417210260418120003382104222126141011098811130885358208000
...................................................................................................AAATTGACTCTAGTAGGGAGG...............................................................................................................................................2115210.0052100000000000000000000000000100000000000000103000201010000000000000000000000000000000000000000000000000000000000000000000010101000020000000000010000001040000000000000007100400180601615170000002300000000020000000000000000001730001000000000000000238331315550141030410431400000006140000350010000063730905127911431270142111096002212716290166400100306128211043290445131610001000
........................................................................................................................................TCCCTAACGGAGTCAGATTGAG.........................................................................................................2214885.004885000050000100003102100000001014104770000010100000000000000000110000000000000000000001500000001112601152160365121000001015170234114290371152240927490000000000100000000010000000000000001071030841098854113198019324000002261020000000000000000003001003730000023070000000094420126505010644503013010115890110001103000001030000002617250374246281312910166000011106589149330150915303302810213243620391916100300
...................................................................................................AAATTGACTCTAGTAGGGA.................................................................................................................................................1913675.003675000000000000000000000000010721296193600000000011000101000000000000000000000000000000000000000000000110001200000001000001910103210012100000000000000000000173002000000000002215703091012822337252677442800000434101000001030000000000100000015103000110010000000014703190300842017250000931110000013510000130010100591715312616121601722165250112598838062164190701916201187481163149304515021000
...................................................................................................AAATTGACTCTAGTAGGGAGC...............................................................................................................................................2113049.00304900000000000000000000000000000000000000001000000000100000000000000000000000000000000000000000000000000000000000000000120200100000000000000000000001000900000000000000059022124030207000000200001000000000000000000000101623000000000000000012001061007340937001027210100100103010021204140200324101681911711470713803623411363215113691033212128042111230133859143467873562030000
....................................................................................................AATTGACTCTAGTAGGGAGTC..............................................................................................................................................2112784.00278400000000000000010000001002171224356200010001013130003011000000000000000000000000100000000100000003010000000030000000000611000000001300000000000000202211180002000000000002765019209196726491151540005005021100001000000000100000031223330002000000000000241710100553102004470200145330020001832601001322011300895297712681162183361217000028268796102329140802381031471444030364277321711308100
.....................................................................................................ATTGACTCTAGTAGGGAGT...............................................................................................................................................1912377.00237700000000000000010000000000320000000000000001000000000000000000000000000000000000000000000000000000100000000000000000000000000100000000000000000000000200000000000000012013207122000200000020010000100000000000000001001151000000000000000053000110040009001051200000002010000000000000144197456781440107501000021844631331360182226319270353066112961113331430014000
........................................................................................................................................TCCCTAACGGAGTCAGATTGA..........................................................................................................2112103.00210300001000000000000020000000001041300000000000000000000000003500000000000000000000001000000000240210010010310000000000008238906010423113420250000000000000000001030000000000000005980055004434047154112211000001250000000000000000000000000000200000000010000000044046231022739097000080610000000000000010100000040014416514718109105000000290141200010000300002004154121627002000
...................................................................................................AAATTGACTCTAGTAGGG..................................................................................................................................................1811822.001822000000000000000000000000000611511001000100000100000000000000000000000000000000000000000000000000100000000000000000000215901100100101000000000000000001000100000000000000028167016108610152137606290000011102000000000000000000000000014200010000000000006203241000214021300011910110000101000000000000170615910815618901436240200000242405441001000802000001528542951216102000
...................................................................................................AAATTGACTCTAGTAGGGAGTT..............................................................................................................................................2211419.0014190000000000000000000000000000000000000000001020000210000000000000000000000000000000000000000000000000060000000000000030000000030030000000000000001000016000000000000000311860101122193901584210000066201000010000000011000000000034700000001000000009406910003150111400008120000000701301001600040210704595038630613201300103116257101210016015021059236424141618002000
...................................................................................................AAATTGACTCTAGTAGGGAGA...............................................................................................................................................2111397.0013970000000000000000000000000000000000010000000000000010000000000000000000000000000000000000000000000000000000000000000001020000000010000000000000000000060000000000000003540201192201590000006001000010000000000000000000021000010000000040001000400002110248000012200000203050000240001000021331221611613001103025002066995105120011000221404002723826613911106000
...................................................................................................AAATTGACTCTAGTAGGGAGTCC.............................................................................................................................................2311168.00116800000000000000001000000000000000000000000000210001100000001000000000000000000000000000000000000010000010000000000000700001000200100000000001010012210220000000000060104405004141130605000000234010000002000000030000000020162116000000010000000030330218000211705100000327200010050500000303100411120460605275073301301105154274719290140603011415001912716617317006100
........................................................................................................................................TCCCTAACGGAGTCAGATTG...........................................................................................................2011009.00100900000000000000000000000000010014121200000000000000000000001020000000000000000000000000000000000050200002000000001000005101083405112000000000000000000003000000000000000670401151401701411830000037000000000000000000000000000000000000000000000002102240002649052000011100000000010000000000000020096881181340235030000908120000000030000000518560325000000
...................................................................................................AAATTGACTCTAGTAGGGAGTTT.............................................................................................................................................231960.00960000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000001000000000000000000003000000000000000151820100031803012015000000163020000200000000000000000000051001200000000000020003000001201200002100000000010000000012010000127181535033204010014110220001100020020100872814517111516000000
...................................................................................................AAATTGACTCTAGTAGGGAGTCG.............................................................................................................................................231942.009420000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000060000000020010000000000000000010140002000000000002518013004516190250500000008202000000000000000000000000001330000000000000000960111000071003000001000000000000000000000000000004164437801720100401012801421001301000000000011187112854000000
.......................................................................................................................................CTCCCTAACGGAGTCAGATT............................................................................................................201729.00729000010000000000000000000000100000000000000000000000000000000000000000000000000001000000000000230000001000100000000012790905230711511000000000000000000000000000000000000105147033126261150511107000000330000000000000000000000000000000000000000000000010013000000002000000000000000100000000000000000151128290000010000102000000000000000000500001000000
...................................................................................................AAATTGACTCTAGTAGGGAGTA..............................................................................................................................................221599.0059900000000000000000000000100000000000000000000100001100000000000000000000000000000000000000000000000000000000000000000100001000404100000000000000000010400010000000000011660902353921110022600000140000000100000000000000000000210000000000000300066014000113021000050001000020310001000000000102202722270350030000154252100011000200003001680531440002000
.................................................................................................TCAAATTGACTCTAGTAGGGAGT...............................................................................................................................................231595.00595000000000000000000000000000002510100000000000000000000000000000000000000000001000000000000000000000000000000000000000102000100000000000000000000000011000000000000000100130413500200000003000000000000000000000000000000000000000000000002100100012400200101311000000000100000000000005012514142303220200005312213000030181501232014267249181211001000
..................................................................................................CAAATTGACTCTAGTAGGGAG................................................................................................................................................211469.00469000010000000000000000000000321612110000000000001000000000000000000000000000000000300000000000010000000000000000000000400000110000000000000000000000000000000000000000081040410313191211426300000200000000000000000000000000000000000000000000000210020000130200000010000000101000000000000003022016182602100000003146010000001000010027931233000000
.....................................................................................................ATTGACTCTAGTAGGGAGTC..............................................................................................................................................201459.0045900000000000000000000000000010000000000000000000010000000000000000000000000000000000000000000000000000000020000000000010100000000000000000000000000000300000000000000013260211141341404260000004221000000000000000000000000401030000000000010000302100610000001400001310000000609010100000000008031433302602235000000101414000010003000000021733000000000
.......................................................................................................................................CTCCCTAACGGAGTCAGATTGAG.........................................................................................................231436.00436000020000100000000000000000000000000000000000000000000000000000000000000000000001000000000040060110331800100100100000010000020105200000000000000000000200000000000000097010005130100401700000028000000000000000000000000000010000000101000000008401600015502300108400000000000000010000000010021453240018450101007177020000206000010011710212000000
.......................................................................................................................................CTCCCTAACGGAGTCAGATTGAA.........................................................................................................231416.004160000100001000000000000000000000000000000000000000000000000000000000000000000000010000000000500601000025000000002010001840201220211280000000000000000000000000000000000008264042007160162702800000030000000000000000000000000000000000100002000000003000100002201000000000010000000000000000000010032240000010000000000000000000000000000000001000
...................................................................................................AAATTGACTCTAGTAGGT..................................................................................................................................................181393.003930000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000104010000000000000000000000000000000000000000000003240542025001227000000000010000000000000000000000000001000000000000100000011000000220020000000000000000000000000000000002626425900200100001024000000000000000039140002002000
...................................................................................................AAATTGACTCTAGTAGGGAGTATC............................................................................................................................................241327.003270000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000191136000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................AAATTGACTCTAGTAGGGAT................................................................................................................................................201272.0027200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000003000000000000000000000100000000000000051280220001010210000000000000000000000000000000000000000000000000011000001101101300100001400000000010000000000000000011353002310300001003000000001000000033431021001000
....................................................................................................AATTGACTCTAGTAGGGAG................................................................................................................................................191271.0027100000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000300101010001000000000000000000000000000000000000054401001051101260000006000000000000000000000000000001000000000000000000001200000201600000600000003020000000002000040857122001120100003467110000101021010024761332011000
..........................................................................................................................................CCTAACGGAGTCAGATTGAG.........................................................................................................201250.002500000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001010000000000000002103001202010000000040000000000000000000000000000000000000000000000016600100001300000008100000000000000000000000000135372925015940000000137000000102001032001312401000000
.......................................................................................................................................CTCCCTAACGGAGTCAGATTGC..........................................................................................................221238.0023800000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000300000000000000971000100010676000000000000000000000000000000000000481703100000000010000001000000000000000000000000000000000000000000000001000000000200000001100000000000000000000000000000010000000000000000000000000000000000000000000
.......................................................................................................................................CTCCCTAACGGAGTCAGATTGT..........................................................................................................221232.0023200001000000000000000000000000000000000000000000000000000000000000000000000000000000000000004004030002600000000000000120001000031520000000000000000000000000000000000002925020004502061132000001000000000000000000000000000000000001000000000000100010002010000000020000000000000000000000004006451302100100011201000000102100040001211000000000
..................................................................................................CAAATTGACTCTAGTAGGG..................................................................................................................................................191222.00222000000000000000000000000000325000100000000000000000000000000000000000000000000000000000000000000100000000000000000001000000000000000000000000000000000000000000000000446025401602222120000000000000000000000000000000000000000000010000000010000000001010000010000000000000000000000000000637800100000000010100000000000010036365002000000
...................................................................................................AAATTGACTCTAGTAGGGAGTTA.............................................................................................................................................231212.00212000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000201000000000000000000000000000000000000000535030023040206000000700000000000000000000000000000000000000000000000100021000040120000000000000000000000000100000008455000000000030650100000000010000863131312000000
..................................................................................................CAAATTGACTCTAGTAGGGAGTC..............................................................................................................................................231198.001980000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000200000010000000000000000000001000000000000000000000000000000000000000003202310722032100000000000000000000000010000000000010000000000000000043001000113011000002000000000000000000000000300581110014410001003165110101008001030044621120002000
........................................................................................................................................TCCCTAACGGAGTCAGATTGAGT........................................................................................................231186.001860000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000070000000000000001000104000100000000000000000000000000000000000000002000001000100000030000000000000000000000001010000000000000000000011013110220003000010000200000000000000000000070056320111001000127801000030220100150013721212011100
...................................................................................................AAATTGACTCTAGTAGGGAA................................................................................................................................................201156.0015600000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000037702001110001400000020000000000000000000000000000110000000000000000000000000001010000000000000010000000000000000003824400000100003121100000000000000032400101000000
...................................................................................................AAATTGACTCTAGTAGGGAGTG..............................................................................................................................................221155.001550000000000000000000000000000000000000000100000002100000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000003140300012151446000000000000000000000000000000000000000000000000000000210110001040100000510000000003000010000000001005466001101001041161500010000200000000620101000000
...................................................................................................AAATTGACTCTAGTAGGGC.................................................................................................................................................191150.00150000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000003200000000010000000000000000000000000000000000000310120000004200000002000000000000000000000000000000000000000000000000000000000300000000000000000000000000000000000011451100110100001010000000000010000048300001000000
...................................................................................................AAATTGACTCTAGTAGGAGT................................................................................................................................................204139.505580000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100220452200300000010000000000000000000000000000421000000000000000000002000002012000122000000000000000000000000200142011240010010000013100000140121251300352603913202214007000
..................................................................................................CAAATTGACTCTAGTAGGGA.................................................................................................................................................201139.00139000000000000000000000000000400000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000321016500110046020000000000000000000000000000000000000000000000000000000000000000010010000000100000000000000000000001203600010000000020000000000011102043761202000000
.......................................................................................................................................CTCCCTAACGGAGTCAGATTT...........................................................................................................211134.001340000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100100000000010000000000000000000000030430000000000000000000000000000000000005001001000010000000030000000000000000000000000000000000000000000000000075100031101000002600000000000000100000000010011810350100000000103000000000000000000300000000000
...................................................................................................AAATTGACTCTAGTAGGGG.................................................................................................................................................191129.0012900000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000013000000100215000000000000000000000000000000000000010000000000000000000000000005001000000000000000000000000000000000171117500010000000041000000000000000024000001001000
...................................................................................................AAATTGACTCTAGTAGGGAGTAT.............................................................................................................................................231120.001200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004180301330409017100000111000000000000000000000000000000000000000000120020002000001000000000000000000000000000000000000331301000010002000000000000000000021430121000000
......................................................................................................TTGACTCTAGTAGGGAGT...............................................................................................................................................181119.001190000000000000000000000000001100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000030000000000000001000110212100000000030001000000000000000000000000010000000000000000000000000000002100010000000000000001100000000000532600100100000140000000100003010053755643000000
....................................................................................................AATTGACTCTAGTAGGGAGTCA.............................................................................................................................................221119.001190000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000001010030078016040500000029000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000004360000010000002210000000000100000500000000000
..................................................................................................CAAATTGACTCTAGTAGG...................................................................................................................................................18196.009600000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001200100000000000000000000000000000000000000000000004604000000021020000000000000000000000000000000000000000000000000000000000000002010000001000000000000000000000000000397100000000000001000000000000000000210000000000
...................................................................................................AAATTGACTCTAGTAGGGGT................................................................................................................................................20191.00910000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001400000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000113600000000000001000000000001000007000000000000
...................................................................................................AAATTGACTCTAGTAGGGAGTAA.............................................................................................................................................23189.0089000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000540000411040602100000012000000000000000000000000000000000000000000000001000000000000000000000000001000000000000000000031210000000000200000000000000000001600100000000
....................................................................................................AATTGACTCTAGTAGGGAGTCT.............................................................................................................................................22189.00890000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000020000000000000004903007305050400000017000000000000000000000000000002000000000000000000200000000000000000000000000010000100001000000000330101000000101101000000001002000300020001000
droEug1
TGATCTATAAAATAAGTCC-----TGT-ATCTGATATAG--A-TGA-----------------------------TAAC--A-AATCCTGACGCTGTTCAAATTGACTCTAGTAGGGAGTCCTTATATCGAGCGACTCCCTAACGGAGTCAGATTGAATTTCAAAGGAGCAA--ACAACAAAGGAGCAGTTC-----------------------------------------T---TAAAA----------GTGTTATCTAASizeHit CountTotal NormTotal
No Reads
droBia1
TACCCAAGTT-----C--C-T-ATTGTCCTTTGACATAA-----CA-----------------------------GAAC--TAAGTCCTGACGCAGTTCAAATTGACTCTAGTAGGGAGTCCTTTTAATGAGCGACTCCCTAACGGAGTCAGATTGAACTTCAAAGGAGCGAG-ACAACAAAGGAGCAACTG-----------------------------------------C---CAAAA----------GTGTTAGCCAASizeHit CountTotal NormTotal
No Reads
droTak1
TGCCTTACAT-----AC-C-T-ATTGTTCCCTGACATAA-----GA-----------------------------GAAC--CAATTCCTGGCGCAGCTCAAATTGACTCTAGTAGGGAGTCCTTTCAATGAGCGACTCCCTAACGGAGTCAGATTGAACTACAAAGGACCAAG-ACAACAAAGGGAAATCTT-----------------------------------------T---AAAAA----------GTGTTAGCTGASizeHit CountTotal NormTotal
No Reads
droEle1
AACCGTGG--------------------------AGC-------GA-----------------------------GAAG--GACTTCCTGGCGCAGCTCAAATTGACTCTAGTAGGGAGTCCTTTTCTCGAGCGACTCCCTAACGGAGTCAGATTGAGCTTCGAAGGAGCAAG-ACATCGGG-GAGCAGCTG-----------------------------------------C---CGAAA----------GTGTTAGCCCASizeHit CountTotal NormTotal
No Reads
droRho1
AGTCTTACAT------------TACGC-----------------GA-----------------------------AAAC--GACTTCCTGCCGCAGTTCAAATTGACTCTAGTAGGGAGTCCTTTTCATGAGCGACTCCCTAACGGAGTCAGATTGATCTACAAAGGAGAGAG-ACAACAAG-GAGCAGCTG-----------------------------------------C---CAAAA----------GTGTTAGCCGASizeHit CountTotal NormTotal
No Reads
droFic1
AC-----------------------GCG--CCGACTTTG------A-----------------------------GAAC--GACTTCCTGACGCAGCTCAAATTGACTCTAGTAGGGAGTCCTTTTCTTGAGCGACTCCCTAACGGAGTCAGATTGAACTTCAAAGGAGCGAG-ACATCGAGGGAGCGGCTG-----------------------------------------C-----CAA----------GTGCTAGCTGASizeHit CountTotal NormTotal
No Reads
droKik1
AATCGAGAGT----------GACCCGAGCAACGCCAT----------------------------------------------GTTCCTGTCGGAGTTCAAATTGACTCTAGTAGGGAGTCCTTTGTACGAGCGACTCCCTAACGGAGTCAGATTGAATTACCAAGGAGAGAG-ACAACAGTG-AG--ATTC-----------------------------------------C---AGAGA----------GTGTTAGGCGASizeHit CountTotal NormTotal
No Reads
droAna3
AATGTC------------CTGAAAAGTGTTCTGAGATGC-----AGCTTCCCCAGCCACCAACCAACCAACCAACCAAC--CACTTCCTGGCGCAGTTCAAATTGACTCTAGTAGGGAGTCCTTTTAACGAGAGACTCCCTAACGGAGTCAGATTGAATTACAAAGGAGCGAG-ACAACGACTACGTGGTGG-CC--------------------------------------T---AAAAA----------GTGTTAGCCTCSizeHit CountTotal NormTotalM044

Female-body		M058

Embryo		V039

Embryo		V055

Head		V105

Male-body		V106

Head
...................................................................................................AAATTGACTCTAGTAGGGAGT...............................................................................................................................................21148433.0048433611081034399564938113
...................................................................................................AAATTGACTCTAGTAGGGAGTC..............................................................................................................................................22114519.00145195518048443511148687
.......................................................................................................................................CTCCCTAACGGAGTCAGATTG...........................................................................................................2115341.005341362121684463246
...................................................................................................AAATTGACTCTAGTAGGGAGTCA.............................................................................................................................................2313204.00320414328361082241
...................................................................................................AAATTGACTCTAGTAGGGAGTCT.............................................................................................................................................2311174.001174817437391681
...................................................................................................AAATTGACTCTAGTAGGGAG................................................................................................................................................201963.009631750403162376
....................................................................................................AATTGACTCTAGTAGGGAGT...............................................................................................................................................201830.0083030060119648
...................................................................................................AAATTGACTCTAGTAGGGAGTCG.............................................................................................................................................231604.00604110117759356
.......................................................................................................................................CTCCCTAACGGAGTCAGATTGA..........................................................................................................221593.005933100518242
...................................................................................................AAATTGACTCTAGTAGGGT.................................................................................................................................................191366.003660002572269
...................................................................................................AAATTGACTCTAGTAGGGAGA...............................................................................................................................................211340.003400001865257
.....................................................................................................ATTGACTCTAGTAGGGAGT...............................................................................................................................................191315.003151001310291
...................................................................................................AAATTGACTCTAGTAGGGAGTTT.............................................................................................................................................231297.002976019936155
...................................................................................................AAATTGACTCTAGTAGGGA.................................................................................................................................................191252.002524028359104
...................................................................................................AAATTGACTCTAGTAGGGAGTTA.............................................................................................................................................231245.002454008824129
...................................................................................................AAATTGACTCTAGTAGGG..................................................................................................................................................181220.002201110107299
...................................................................................................AAATTGACTCTAGTAGGGAGC...............................................................................................................................................211191.0019102002632113
...................................................................................................AAATTGACTCTAGTAGGT..................................................................................................................................................181155.0015500059195
....................................................................................................AATTGACTCTAGTAGGGAGTC..............................................................................................................................................211155.0015553085359
...................................................................................................AAATTGACTCTAGTAGGGAGTT..............................................................................................................................................221117.00117000491355
...................................................................................................AAATTGACTCTAGTAGGGAGTCC.............................................................................................................................................23184.0084011122644
........................................................................................................................................TCCCTAACGGAGTCAGATTG...........................................................................................................20183.0083380012033
...................................................................................................AAATTGACTCTAGTAGGGAGG...............................................................................................................................................21180.0080000232037
...................................................................................................AAATTGACTCTAGTAGGGAGTTG.............................................................................................................................................23173.0073100271530
........................................................................................................................................TCCCTAACGGAGTCAGATTGA..........................................................................................................21163.006383016036
...................................................................................................AAATTGACTCTAGTAGGGAGTA..............................................................................................................................................22150.005001017131
.......................................................................................................................................CTCCCTAACGGAGTCAGATTT...........................................................................................................21148.00480003144
.......................................................................................................................................CTCCCTAACGGAGTCAGATT............................................................................................................20143.004316002205
..................................................................................................CAAATTGACTCTAGTAGGGAGT...............................................................................................................................................22128.002811121211
.....................................................................................................ATTGACTCTAGTAGGGAGTC..............................................................................................................................................20121.00210001614
...................................................................................................AAATTGACTCTAGTAGGGAGTAT.............................................................................................................................................23115.00150005010
...................................................................................................AAATTGACTCTAGTAGGGAGTG..............................................................................................................................................22114.0014000716
....................................................................................................AATTGACTCTAGTAGGGAG................................................................................................................................................19114.0014000806
...................................................................................................AAATTGACTCTAGTAGGGAGTGT.............................................................................................................................................23113.0013000931
...................................................................................................AAATTGACTCTAGTAGGGAT................................................................................................................................................20113.0013000526
...................................................................................................AAATTGACTCTAGTAGGGAGTAA.............................................................................................................................................23112.0012100317
.......................................................................................................................................CTCCCTAACGGAGTCAGATTC...........................................................................................................21111.0011000407
..................................................................................................CAAATTGACTCTAGTAGGGAGTC..............................................................................................................................................23110.0010030115
.......................................................................................................................................CTCCCTAACGGAGTCAGATTA...........................................................................................................2119.009000009
....................................................................................................AATTGACTCTAGTAGGGA.................................................................................................................................................1818.008300401
.......................................................................................................................................CTCCCTAACGGAGTCAGATTGAA.........................................................................................................2318.008210302
...........................................................................................................................................CTAACGGAGTCAGATTGA..........................................................................................................1818.008000206
...................................................................................................AAATTGACTCTAGTAGG...................................................................................................................................................1718.008000800
...................................................................................................AAATTGACTCTAGTAGGGAA................................................................................................................................................2017.007100510
.......................................................................................................................................CTCCCTAACGGAGTCAGATTGAT.........................................................................................................2317.007000403
..........................................................................................................................................CCTAACGGAGTCAGATTGA..........................................................................................................1917.007000007
......................................................................................................TTGACTCTAGTAGGGAGT...............................................................................................................................................1816.006000015
....................................................................................................AATTGACTCTAGTAGGGAGTCA.............................................................................................................................................2216.006100104
.......................................................................................................................................CTCCCTAACGGAGTCAGATTGC..........................................................................................................2216.006000600
....................................................................................................AATTGACTCTAGTAGGGAGTCT.............................................................................................................................................2216.006110112
...................................................................................................AAATTGACTCTAGTAGGGAGTGA.............................................................................................................................................2316.006100302
.......................................................................................................................................CTCCCTAACGGAGTCAGATTGT..........................................................................................................2216.006100302
.....................................................................................................ATTGACTCTAGTAGGGAGTCT.............................................................................................................................................2115.005000401
..................................................................................................CAAATTGACTCTAGTAGGG..................................................................................................................................................1915.005100112
...................................................................................................AAATTGACTCTAGTAGGTT.................................................................................................................................................1915.005000203
...................................................................................................AAATTGACTCTAGTAGGAGT................................................................................................................................................20104.00400003235
droBip1
AGTGAGAAAA----TGTCCTGAAAAGGGTACTGAGATGC-----GGCCTTCC-------------ACCAACCCACCAAC--CACTTCCTGGCGCAGTTCAAATTGACTCTAGTAGGGAGTCCTTTTAACGAGCGACTCCCTAACGGAGTCAGATTGAATTACAAAGGAGCGAG-ACAACGACTAAGGGGTTG-CC--------------------------------------C---AAAAA----------GTGTTAGCCTTSizeHit CountTotal NormTotal
No Reads
dp5
GTGCATGCGC-----CC---GA-------TCCGAAGTG------C--------------------------------ACGGCAATTCCTGCAGCAGTTCAAATTGACTCTAGTAGGGAGTCCTTTTATTGAGCGACTCCCTAACGGAGTCAGATTGAATTACCAAGGAAC-AG-ACAACAGTGGAGCGAAAG-------------------------------------ACAAAGAACCGAA----------GTG-TAGTTGCSizeHit CountTotal NormTotalM022

Male-body		M040

Female-body		M059

Embryo		M062

Head		V043

Embryo		V051

Head		V112

Male-body		SRR902010

Ovary		SRR902011

Testis		SRR902012

CNS imaginal disc
...................................................................................................AAATTGACTCTAGTAGGGAGT...............................................................................................................................................2117708.0077081231179704887436313240217
...................................................................................................AAATTGACTCTAGTAGGGAGTC..............................................................................................................................................2216817.00681704234207144914467290417
.......................................................................................................................................CTCCCTAACGGAGTCAGATTG...........................................................................................................2112256.002256145612116168576000
...................................................................................................AAATTGACTCTAGTAGGGAG................................................................................................................................................201968.0096808510731071764126
...................................................................................................AAATTGACTCTAGTAGGGAGTCT.............................................................................................................................................231846.0084607350604658032005
...................................................................................................AAATTGACTCTAGTAGGGAGTCA.............................................................................................................................................231785.0078501004231660137004
.......................................................................................................................................CTCCCTAACGGAGTCAGATTGA..........................................................................................................221739.0073904126146731002
....................................................................................................AATTGACTCTAGTAGGGAGTC..............................................................................................................................................211216.0021604532221431000
...................................................................................................AAATTGACTCTAGTAGGGAGC...............................................................................................................................................211197.0019701611095174000
...................................................................................................AAATTGACTCTAGTAGGGAGTCC.............................................................................................................................................231119.001190532172585000
....................................................................................................AATTGACTCTAGTAGGGAGT...............................................................................................................................................201114.0011402521244922000
...................................................................................................AAATTGACTCTAGTAGGGA.................................................................................................................................................19182.00820131364710011
........................................................................................................................................TCCCTAACGGAGTCAGATTG...........................................................................................................20169.0069043000260000
........................................................................................................................................TCCCTAACGGAGTCAGATTGA..........................................................................................................21154.005409026351001
....................................................................................................AATTGACTCTAGTAGGGAG................................................................................................................................................19132.003207131191000
.....................................................................................................ATTGACTCTAGTAGGGAGTC..............................................................................................................................................20130.003001128090000
...................................................................................................AAATTGACTCTAGTAGGGAGG...............................................................................................................................................21127.002700366120000
...................................................................................................AAATTGACTCTAGTAGGG..................................................................................................................................................18126.002602120200001
..................................................................................................CAAATTGACTCTAGTAGGGAGTC..............................................................................................................................................23126.002601713140000
..................................................................................................CAAATTGACTCTAGTAGGGAGT...............................................................................................................................................22123.002302114060000
...................................................................................................AAATTGACTCTAGTAGGGAGTCG.............................................................................................................................................23123.002302001182000
...................................................................................................AAATTGACTCTAGTAGGGAGTT..............................................................................................................................................22121.002102021160000
...................................................................................................AAATTGACTCTAGTAGGGAGTTT.............................................................................................................................................23117.00170222092000
.....................................................................................................ATTGACTCTAGTAGGGAGT...............................................................................................................................................19117.001703111011000
...................................................................................................AAATTGACTCTAGTAGGGAGTA..............................................................................................................................................22116.00160242080000
...................................................................................................AAATTGACTCTAGTAGGGAGA...............................................................................................................................................21115.001500000150000
....................................................................................................AATTGACTCTAGTAGGGAGTCA.............................................................................................................................................22113.001301000030000
.......................................................................................................................................CTCCCTAACGGAGTCAGATT............................................................................................................20112.001201101000000
.......................................................................................................................................CTCCCTAACGGAGTCAGATTGAA.........................................................................................................23111.00110501140000
.......................................................................................................................................CTCCCTAACGGAGTCAGATTGT..........................................................................................................22110.00100200080000
....................................................................................................AATTGACTCTAGTAGGGAGTCT.............................................................................................................................................2219.0090700020000
.....................................................................................................ATTGACTCTAGTAGGGAGTCC.............................................................................................................................................2117.0070011050000
...................................................................................................AAATTGACTCTAGTAGGGAGTTA.............................................................................................................................................2316.0060102030000
...................................................................................................AAATTGACTCTAGTAGGGT.................................................................................................................................................1916.0060000051000
.....................................................................................................ATTGACTCTAGTAGGGAG................................................................................................................................................1815.0050101030000
...................................................................................................AAATTGACTCTAGTAGGGAGTG..............................................................................................................................................2215.0050000230000
...................................................................................................AAATTGACTCTAGTAGGGAT................................................................................................................................................2014.0040000040000
..........................................................................................................................................CCTAACGGAGTCAGATTG...........................................................................................................1814.0040000040000
....................................................................................................AATTGACTCTAGTAGGGAGTCC.............................................................................................................................................2214.0040000031000
...................................................................................................AAATTGACTCTAGTAGGGAA................................................................................................................................................2014.0040001030000
......................................................................................................TTGACTCTAGTAGGGAGT...............................................................................................................................................1814.0040002011000
.................................................................................................TCAAATTGACTCTAGTAGGGAGTC..............................................................................................................................................2414.0040002020000
.......................................................................................................................................CTCCCTAACGGAGTCAGATTGC..........................................................................................................2214.0040000040000
..................................................................................................CAAATTGACTCTAGTAGGGAG................................................................................................................................................2113.0030100020000
..................................................................................................CAAATTGACTCTAGTAGGGAGTCT.............................................................................................................................................2413.0030002010000
...................................................................................................AAATTGACTCTAGTAGGGAGTCCT............................................................................................................................................2413.0030001011000
........................................................................................................................................TCCCTAACGGAGTCAGATTGAA.........................................................................................................2213.0030000111000
..........................................................................................................................................CCTAACGGAGTCAGATTGA..........................................................................................................1913.0030000030000
.......................................................................................................................................CTCCCTAACGGAGTCAGAT.............................................................................................................1913.0030012000000
....................................................................................................AATTGACTCTAGTAGGGA.................................................................................................................................................1813.0030000030000
...................................................................................................AAATTGACTCTAGTAGGT..................................................................................................................................................1813.0030000030000
......................................................................................................TTGACTCTAGTAGGGAGTC..............................................................................................................................................1912.0020200000000
...................................................................................................AAATTGACTCTAGTAGGGAGTAA.............................................................................................................................................2312.0020100010000
...................................................................................................AAATTGACTCTAGTAGGGAC................................................................................................................................................2012.0020002000000
...................................................................................................AAATTGACTCTAGTAGGTT.................................................................................................................................................1922.0040000040000
...................................................................................................AAATTGACTCTAGTAGGGATC...............................................................................................................................................2112.0020002000000
..................................................................................................CAAATTGACTCTAGTAGGGAGC...............................................................................................................................................2212.0020011000000
.........................................................................................................................................CCCTAACGGAGTCAGATTG...........................................................................................................1912.0020200000000
droPer2
GTGCATGCGC-----CC---GA-------TCCGAAGTG------C--------------------------------ACGGGATTTCCTGCAGCAGTTCAAATTGACTCTAGTAGGGAGTCCTTTTATTGAGCGACTCCCTAACGGAGTCAGATTGAATTACCAAGGAAC-AG-ACAACAGTGGAGCA---------------------------------------------------------------------------SizeHit CountTotal NormTotalM021

Embryo		M042

Female-body		V042

Embryo		V050

Head		V057

Head		V111

Male-body
...................................................................................................AAATTGACTCTAGTAGGGAGT...............................................................................................................................................21118343.0018343553216391365247632
...................................................................................................AAATTGACTCTAGTAGGGAGTC..............................................................................................................................................22114511.001451156454414590201223
.......................................................................................................................................CTCCCTAACGGAGTCAGATTG...........................................................................................................2113906.00390607541277250941
...................................................................................................AAATTGACTCTAGTAGGGAGTCT.............................................................................................................................................2311722.00172201194781053171
...................................................................................................AAATTGACTCTAGTAGGGAGTCA.............................................................................................................................................2311689.0016890811478112567
...................................................................................................AAATTGACTCTAGTAGGGAG................................................................................................................................................2011010.0010101111312508177
.......................................................................................................................................CTCCCTAACGGAGTCAGATTGA..........................................................................................................221487.0048701513241470
....................................................................................................AATTGACTCTAGTAGGGAGTC..............................................................................................................................................211220.00220070711375
...................................................................................................AAATTGACTCTAGTAGGGAGTCC.............................................................................................................................................231196.001960104512426
.....................................................................................................ATTGACTCTAGTAGGGAGTC..............................................................................................................................................201179.0017902051711
...................................................................................................AAATTGACTCTAGTAGGGA.................................................................................................................................................191114.00114036195333
....................................................................................................AATTGACTCTAGTAGGGAGT...............................................................................................................................................201112.00112061285027
...................................................................................................AAATTGACTCTAGTAGGGAGC...............................................................................................................................................21167.00670008509
...................................................................................................AAATTGACTCTAGTAGGGAGTT..............................................................................................................................................22147.004700092810
.....................................................................................................ATTGACTCTAGTAGGGAGT...............................................................................................................................................19146.004600023410
........................................................................................................................................TCCCTAACGGAGTCAGATTGA..........................................................................................................21143.004320019220
........................................................................................................................................TCCCTAACGGAGTCAGATTG...........................................................................................................20142.004209014190
...................................................................................................AAATTGACTCTAGTAGGGAGG...............................................................................................................................................21137.00371006300
...................................................................................................AAATTGACTCTAGTAGGGAGTCG.............................................................................................................................................23135.00350203264
...................................................................................................AAATTGACTCTAGTAGGGAGA...............................................................................................................................................21132.00320005225
...................................................................................................AAATTGACTCTAGTAGGGAGTA..............................................................................................................................................22131.00310019201
...................................................................................................AAATTGACTCTAGTAGGGAGTTT.............................................................................................................................................23127.002701051110
.....................................................................................................ATTGACTCTAGTAGGGAGTCC.............................................................................................................................................21120.00200007130
...................................................................................................AAATTGACTCTAGTAGGG..................................................................................................................................................18120.00201007120
..................................................................................................CAAATTGACTCTAGTAGGGAGT...............................................................................................................................................22116.0016020446
.......................................................................................................................................CTCCCTAACGGAGTCAGATT............................................................................................................20115.00150202110
...................................................................................................AAATTGACTCTAGTAGGGAGTTA.............................................................................................................................................23111.0011000092
...................................................................................................AAATTGACTCTAGTAGGGT.................................................................................................................................................19111.0011000344
.......................................................................................................................................CTCCCTAACGGAGTCAGATTGT..........................................................................................................2219.009000450
....................................................................................................AATTGACTCTAGTAGGGAG................................................................................................................................................1919.009110250
...................................................................................................AAATTGACTCTAGTAGGGAGTG..............................................................................................................................................2219.009000270
...................................................................................................AAATTGACTCTAGTAGGT..................................................................................................................................................1818.008100160
.....................................................................................................ATTGACTCTAGTAGGGAGTCT.............................................................................................................................................2118.008000170
....................................................................................................AATTGACTCTAGTAGGGAGTCC.............................................................................................................................................2217.007000070
.......................................................................................................................................CTCCCTAACGGAGTCAGATTGAT.........................................................................................................2315.005000140
...................................................................................................AAATTGACTCTAGTAGGGAGTCTC............................................................................................................................................2415.005000140
....................................................................................................AATTGACTCTAGTAGGGAGTCT.............................................................................................................................................2215.005010211
...................................................................................................AAATTGACTCTAGTAGGGAA................................................................................................................................................2015.005010022
...................................................................................................AAATTGACTCTAGTAGGGAGTAT.............................................................................................................................................2315.005000050
...................................................................................................AAATTGACTCTAGTAGGGAGTAA.............................................................................................................................................2314.004000121
.......................................................................................................................................CTCCCTAACGGAGTCAGATTC...........................................................................................................2114.004000130
.......................................................................................................................................CTCCCTAACGGAGTCAGATTT...........................................................................................................2114.004000130
...................................................................................................AAATTGACTCTAGTAGGGAGAA..............................................................................................................................................2213.003000120
droWil2
AGCATAA----------------------TCTAAAGTGG--CTTGA-----------------------------GA-----ACTTCCTGCGGCAGTTCAAATTGACTCTAGTAGGGAGTCCTTTATATAAGCGACTCCCTAACGGAGTCAGATTGAATTACAAAGGAACAACAACAACAAAA-AGCCACGA-----------------------------------------CCCACCAAA----------GTGTTAGACCTSizeHit CountTotal NormTotalM020

Head		M045

Female-body		V117

Male-body		V118

Embryo		V119

Head
...................................................................................................AAATTGACTCTAGTAGGGAGT...............................................................................................................................................21197883.00978834871623418839285424
...................................................................................................AAATTGACTCTAGTAGGGAGTC..............................................................................................................................................22118888.0018888139161614764510329
.......................................................................................................................................CTCCCTAACGGAGTCAGATTG...........................................................................................................2112505.002505931529892162
...................................................................................................AAATTGACTCTAGTAGGGAGTCT.............................................................................................................................................2311953.001953655547811057
...................................................................................................AAATTGACTCTAGTAGGGAGTCA.............................................................................................................................................2311464.001464227472481140
...................................................................................................AAATTGACTCTAGTAGGGAG................................................................................................................................................201843.00843214247248485
....................................................................................................AATTGACTCTAGTAGGGAGT...............................................................................................................................................201452.004522171150372
...................................................................................................AAATTGACTCTAGTAGGGAGTCG.............................................................................................................................................231365.003655262136277
...................................................................................................AAATTGACTCTAGTAGGGAGC...............................................................................................................................................211207.00207192614166
........................................................................................................................................TCCCTAACGGAGTCAGATTGA..........................................................................................................211191.00191224023142
...................................................................................................AAATTGACTCTAGTAGGGAGTCC.............................................................................................................................................231184.00184221057113
..................................................................................................CAAATTGACTCTAGTAGGGAGT...............................................................................................................................................221145.0014503712123
.....................................................................................................ATTGACTCTAGTAGGGAGT...............................................................................................................................................191128.0012821515105
.......................................................................................................................................CTCCCTAACGGAGTCAGATTGA..........................................................................................................22188.008851902935
...................................................................................................AAATTGACTCTAGTAGGGA.................................................................................................................................................19186.008635211443
....................................................................................................AATTGACTCTAGTAGGGAGTC..............................................................................................................................................21183.008321202346
...................................................................................................AAATTGACTCTAGTAGGGAGA...............................................................................................................................................21177.0077000275
...................................................................................................AAATTGACTCTAGTAGGGAGG...............................................................................................................................................21168.00682703335
...................................................................................................AAATTGACTCTAGTAGGGAGTA..............................................................................................................................................22166.00660001254
........................................................................................................................................TCCCTAACGGAGTCAGATTG...........................................................................................................20161.00612210335
.................................................................................................TCAAATTGACTCTAGTAGGGAGT...............................................................................................................................................23160.00601001346
...................................................................................................AAATTGACTCTAGTAGGGT.................................................................................................................................................19147.00470011432
...................................................................................................AAATTGACTCTAGTAGGGAGTT..............................................................................................................................................22132.0032013325
...................................................................................................AAATTGACTCTAGTAGGGAGTTT.............................................................................................................................................23127.0027015417
........................................................................................................................................TCCCTAACGGAGTCAGATTGAA.........................................................................................................22122.0022220810
.....................................................................................................ATTGACTCTAGTAGGGAGTC..............................................................................................................................................20118.001841067
...................................................................................................AAATTGACTCTAGTAGGGAC................................................................................................................................................20116.0016160000
...................................................................................................AAATTGACTCTAGTAGGG..................................................................................................................................................18116.0016110113
..........................................................................................................................................CCTAACGGAGTCAGATTGA..........................................................................................................19115.0015101112
.......................................................................................................................................CTCCCTAACGGAGTCAGATT............................................................................................................20115.001565004
...........................................................................................................................................CTAACGGAGTCAGATTGA..........................................................................................................18113.001350017
.......................................................................................................................................CTCCCTAACGGAGTCAGATTGAA.........................................................................................................23112.001231026
.......................................................................................................................................CTCCCTAACGGAGTCAGAT.............................................................................................................19111.0011101000
......................................................................................................TTGACTCTAGTAGGGAGT...............................................................................................................................................18110.001002125
...................................................................................................AAATTGACTCTAGTAGGGAGTAA.............................................................................................................................................2319.00901008
...................................................................................................AAATTGACTCTAGTAGGGAGTCTA............................................................................................................................................2419.00900054
...................................................................................................AAATTGACTCTAGTAGGGAGTTA.............................................................................................................................................2318.00802006
.......................................................................................................................................CTCCCTAACGGAGTCAGATTGAT.........................................................................................................2317.00740003
....................................................................................................AATTGACTCTAGTAGGGAGTCT.............................................................................................................................................2217.00702032
...................................................................................................AAATTGACTCTAGTAGGGAGTTG.............................................................................................................................................2316.00630102
..................................................................................................CAAATTGACTCTAGTAGGGAGTC..............................................................................................................................................2315.00500023
....................................................................................................AATTGACTCTAGTAGGGAGTCC.............................................................................................................................................2215.00501013
...................................................................................................AAATTGACTCTAGTAGGGAGTAT.............................................................................................................................................2315.00500005
....................................................................................................AATTGACTCTAGTAGGGAGTCG.............................................................................................................................................2214.00403001
...................................................................................................AAATTGACTCTAGTAGGGAGTCAA............................................................................................................................................2414.00402011
.......................................................................................................................................CTCCCTAACGGAGTCAGATTGT..........................................................................................................2214.00421001
.....................................................................................................ATTGACTCTAGTAGGGAG................................................................................................................................................1814.00430010
...................................................................................................AAATTGACTCTAGTAGGGAGTGT.............................................................................................................................................2314.00421001
...................................................................................................AAATTGACTCTAGTAGGT..................................................................................................................................................1814.00400004
.........................................................................................................................................CCCTAACGGAGTCAGATTGA..........................................................................................................2014.00401003
....................................................................................................AATTGACTCTAGTAGGGAGTCA.............................................................................................................................................2214.00402002
.....................................................................................................ATTGACTCTAGTAGGGAGTCA.............................................................................................................................................2113.00301002
...................................................................................................AAATTGACTCTAGTAGGGAT................................................................................................................................................2013.00300111
........................................................................................................................................TCCCTAACGGAGTCAGATTGAAA........................................................................................................2313.00310011
...........................................TGA-----------------------------GA-----ACTTCCTGCGGCAGTTC....................................................................................................................................................................2213.00320010
........................................................................................................................................TCCCTAACGGAGTCAGATTGAAT........................................................................................................2313.00330000
...................................................................................................AAATTGACTCTAGTAGGGAGTG..............................................................................................................................................2213.00300111
........................................................................................................................................TCCCTAACGGAGTCAGATTGG..........................................................................................................2112.00220000
.......................................................................................................................................CTCCCTAACGGAGTCAGA..............................................................................................................1812.00202000
.......................................................................................................................................CTCCCTAACGGAGTCAGATTGAAC........................................................................................................2412.00220000
........................................................................................................................................TCCCTAACGGAGTCAGATT............................................................................................................1912.00210001
.......................................................................................................................................CTCCCTAACGGAGTCAGATTA...........................................................................................................2112.00200002
droVir3
GGCCAAGTGC------------GACGCG--------------------------------------------------T--GAATTCCTGCCGCAGTTCAAATTGACTCTAGTAGGGAGTCCTTT-CACGAGCGACTCCCTAACGGAGTCAGATTGAATTACAAAGGACCCAG-ACAACGAG---------T-----------------------------------------A---AAAAT----------GTGCCAAGTGASizeHit CountTotal NormTotalM027

Male-body		M028

Head		M047

Female-body		M061

Embryo		SRR060654

Ovary		SRR060655

Testis		SRR060656

Ovary		SRR060657

Testis		SRR060658

Ovary		SRR060659

Testis		SRR060660

Ovary		SRR060661

Embryo		SRR060662

Embryo		SRR060663

Embryo		SRR060664

Male-body		SRR060665

Female-body		SRR060666

Male-body		SRR060667

Female-body		SRR060668

Male-body		SRR060669

Female-body		SRR060670

Testis		SRR060671

Male-body		SRR060672

Female-body		SRR060673

Ovary		SRR060674

Ovary		SRR060675

Ovary		SRR060676

Ovary		SRR060677

Ovary		SRR060678

Testis		SRR060679

Testis		SRR060680

Testis		SRR060681

Testis		SRR060682

Embryo		SRR060683

Testis		SRR060684

Embryo		SRR060685

Embryo		SRR060686

Embryo		SRR060687

Embryo		SRR060688

Ovary		SRR060689

Testis		SRR1106712

embryo_0-2h		SRR1106713

embryo_0-2h		SRR1106714

embryo_2-4h		SRR1106715

embryo_4-6h		SRR1106716

embryo_4-6h		SRR1106717

embryo_6-8h		SRR1106718

embryo_6-8h		SRR1106719

embryo_8-10h		SRR1106720

embryo_8-10h		SRR1106721

embryo_10-12h		SRR1106722

embryo_10-12h		SRR1106723

embryo_12-14h		SRR1106724

embryo_12-14h		SRR1106725

embryo_14-16h		SRR1106726

embryo_14-16h		SRR1106727

larvae		SRR1106728

larvae		SRR1106729

mixed whole adult body		SRR1106730

embryo_16-30h		V047

Embryo		V053

Head		V116

Male-body		GSM1528803

follicle cells		SRR2096013

Ovary_Strain_9_oxidized		SRR2096014

Ovary_Strain_160_oxidized		SRR2096026

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096038

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096050

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096055

Ovary_Min_43		SRR2096056

Ovary_Min_46		SRR2096057

Ovary_Min_50		SRR2096058

Ovary_Min_98		SRR2096059

Ovary_Min_164		SRR2096060

Ovary_Min_193		SRR2096061

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096072

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096079

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096080

embryo_0-2h from 15to16 day old nondysgenic mothers		SRR2096081

embryo_0-2h from 15to16 day old nondysgenic mothers
...................................................................................................AAATTGACTCTAGTAGGGAGT...............................................................................................................................................21121160.0021160812426013739076391617227001931518321757637308248161002702325485216208600002120001000000000000108956380845209000000135141000001
...................................................................................................AAATTGACTCTAGTAGGGAGTC..............................................................................................................................................22113334.00133342353731750486391036110001481759423859473423149851278931255359104703800016830000000000100000003187487651600000003100000000
.......................................................................................................................................CTCCCTAACGGAGTCAGATTG...........................................................................................................2117094.0070945303793020000000052231714733057424648117671001156180100010200000000000000000001828694200000001000000000
...................................................................................................AAATTGACTCTAGTAGGGAGTCT.............................................................................................................................................2313781.003781027715317001410005682891813301972431482661612521224112010000073000000000000000000001053344001000000000000000
...................................................................................................AAATTGACTCTAGTAGGGAGTCA.............................................................................................................................................2311766.001766007030411100000192134751708676017924100113551200000004000000000000000000074772700000000000000000
...................................................................................................AAATTGACTCTAGTAGGGAG................................................................................................................................................2011607.001607915178413020700009561336974450566521111811270200001600000000000000000111693101003000110000000000
.......................................................................................................................................CTCCCTAACGGAGTCAGATTGA..........................................................................................................221486.0048603431000000000035236297333058320000030110000000000000000000000000000145000000000000000000
...................................................................................................AAATTGACTCTAGTAGGGAGTCC.............................................................................................................................................231418.00418004601940030000392614282521843470001110133100800001210000000000000000000351900000000000000000
...................................................................................................AAATTGACTCTAGTAGGGAGTCG.............................................................................................................................................231355.003550070003001000035281533302302569000001010010000020000000000000000000176400000000000000000
....................................................................................................AATTGACTCTAGTAGGGAGT...............................................................................................................................................201308.00308043111101302000050436205600000200200000004000000000000000000049811300100000000000000
...................................................................................................AAATTGACTCTAGTAGGG..................................................................................................................................................181243.0024324527000000000009444530430000000000100000100000000000000000201126200000000000000000
...................................................................................................AAATTGACTCTAGTAGGGA.................................................................................................................................................191225.002250782000000000095354416800000000000000001000000000000000000051183900000000000000000
....................................................................................................AATTGACTCTAGTAGGGAGTC..............................................................................................................................................211168.00168024930003030000867125701320000000200000000060000000000000000000213700000000000000000
...................................................................................................AAATTGACTCTAGTAGGGAGTT..............................................................................................................................................221115.0011500400011010000126213740917000000000010000000000000000000000000029800000000000000000
........................................................................................................................................TCCCTAACGGAGTCAGATTG...........................................................................................................201109.00109033900000000000151154087000000000000000000000000000000000000034100000000000000000
...................................................................................................AAATTGACTCTAGTAGGGAGC...............................................................................................................................................211108.001080100180002010000010010000000000000010000010000000000000000000166600000000000000000
...................................................................................................AAATTGACTCTAGTAGGGAGTTT.............................................................................................................................................231107.0010700120000000000015449770711000000000000000000000000000000000000027400000000000000000
...................................................................................................AAATTGACTCTAGTAGGGT.................................................................................................................................................19191.0091012000041100000021200020000000000000000100000000000000000000522200000000000000000
...................................................................................................AAATTGACTCTAGTAGGGAGA...............................................................................................................................................21182.0082023000000100003405200260000000000000000000000000000000000001381500000000000000000
........................................................................................................................................TCCCTAACGGAGTCAGATTGA..........................................................................................................21170.0070022000010000006415530106000001200000000000000000000000000000119100000001000000000
...................................................................................................AAATTGACTCTAGTAGGGAGG...............................................................................................................................................21162.0062418000001010000000000000000000000000000000000000000000000000134300000000000000000
.....................................................................................................ATTGACTCTAGTAGGGAGT...............................................................................................................................................19152.005203800107020000020010102000000100000000010000000000000000000014900000000000000000
.......................................................................................................................................CTCCCTAACGGAGTCAGATT............................................................................................................20148.0048011240000000000000022004300000000100000000000000000000000000001000000000000000000
..................................................................................................CAAATTGACTCTAGTAGGGAG................................................................................................................................................21138.003804200000000000610242031000000000010000000000000000000000000010100000000100000000
...................................................................................................AAATTGACTCTAGTAGGGAA................................................................................................................................................20136.003614200000000000100311030000000000000000000000000000000000000016400000000000000000
..................................................................................................CAAATTGACTCTAGTAGGGAGT...............................................................................................................................................22134.003400200000000000230210030000000000000000000000000000000000010111800000000000000000
...................................................................................................AAATTGACTCTAGTAGGGAGTTA.............................................................................................................................................23132.003200210000000000231102032000000000000000000000000000000000000013200000000000000000
.....................................................................................................ATTGACTCTAGTAGGGAGTC..............................................................................................................................................20132.003205113000000000011370100000000000000000000000000000000000000000000000000000000000
...................................................................................................AAATTGACTCTAGTAGGGAGTA..............................................................................................................................................22131.00310011000000000073210300300000010000000000000000000000000000005400000000000000000
...................................................................................................AAATTGACTCTAGTAGGGAGTG..............................................................................................................................................22121.00210000000100000011012103600000000000000000000000000000000000003200000000000000000
...................................................................................................AAATTGACTCTAGTAGGGAGTCTA............................................................................................................................................24120.00200010000000000001133203300000000000000000000000000000000000002100000000000000000
....................................................................................................AATTGACTCTAGTAGGGAGTCT.............................................................................................................................................22120.00200040000000000021011002400010000001000000000000000000000000003000000000000000000
..................................................................................................CAAATTGACTCTAGTAGGG..................................................................................................................................................19120.00200410000000000020010100000000000000000000000000000000000000007300000001000000000
...................................................................................................AAATTGACTCTAGTAGGT..................................................................................................................................................18218.5037014000000000000112001002000000000000000000000000000000000000016000000000000000000
....................................................................................................AATTGACTCTAGTAGGGAGTCC.............................................................................................................................................22118.00180000030000000000000001300000130001000002000000000000000000002200000000000000000
...................................................................................................AAATTGACTCTAGTAGGGAGTTG.............................................................................................................................................23118.00180310010000000010110001300000000000000000000000000000000000005100000000000000000
...................................................................................................AAATTGACTCTAGTAGGGAC................................................................................................................................................20116.00163900000000000000000000000000000000000000000000000000000000004000000000000000000
....................................................................................................AATTGACTCTAGTAGGGAG................................................................................................................................................19115.00150050000000000020000001000000000000000000000000000000000000007000000000000000000
.......................................................................................................................................CTCCCTAACGGAGTCAGATTGAA.........................................................................................................23114.00140060000000000011010100100000000000000000000000000000000000003000000000000000000
...................................................................................................AAATTGACTCTAGTAGGGAGTCTG............................................................................................................................................24113.00130010000000000010021101100000000000000000000000000000000000004100000000000000000
..........................................................................................................................................CCTAACGGAGTCAGATTG...........................................................................................................18113.00130010000000000003011002200000000000000000000000000000000000003000000000000000000
..................................................................................................CAAATTGACTCTAGTAGG...................................................................................................................................................18111.00110610000000000000000000200000000000000000000000000000000000002000000000000000000
.......................................................................................................................................CTCCCTAACGGAGTCAGATTGAT.........................................................................................................23111.00110000000000000033010001200000000000000000000000000000000000001000000000000000000
....................................................................................................AATTGACTCTAGTAGGGAGTCA.............................................................................................................................................22110.00100060000000000000100001100000000000000000000000000000000000001000000000000000000
.......................................................................................................................................CTCCCTAACGGAGTCAGATTT...........................................................................................................2119.0090000000000000010001101100000000000000000000000000000000000013000000000000000000
...................................................................................................AAATTGACTCTAGTAGGGAT................................................................................................................................................2019.0090100000000000020001000100000000000000000000000000000000000003100000000000000000
..................................................................................................CAAATTGACTCTAGTAGGGAGTC..............................................................................................................................................2319.0090011000000000020000101000000000000000000000000000000000000003000000000000000000
...................................................................................................AAATTGACTCTAGTAGGA..................................................................................................................................................1818.0080320000000000000000000100000000000000000000000000000000000002000000000000000000
.......................................................................................................................................CTCCCTAACGGAGTCAGATTA...........................................................................................................2118.0080000000000000001000001000000000000000000000000000000000000006000000000000000000
.....................................................................................................ATTGACTCTAGTAGGGAGTCC.............................................................................................................................................2117.0070000000100000000100101300000000000000000000000000000000000000000000000000000000
.......................................................................................................................................CTCCCTAACGGAGTCAGATTGT..........................................................................................................2217.0070100000000000000011002000000000000000000000000000000000000001100000000000000000
.......................................................................................................................................CTCCCTAACGGAGTCAGATTGC..........................................................................................................2217.0070001000000000000101001000000000000000000000000000000000000003000000000000000000
......................................................................................................TTGACTCTAGTAGGGAGTC..............................................................................................................................................1917.0070121000000000000000001000000000000000000000000000000000000002000000000000000000
.......................................................................................................................................CTCCCTAACGGAGTCAGAT.............................................................................................................1917.0071110000000000010000000000000000000000000000000000000000000001000000002000000000
...................................................................................................AAATTGACTCTAGTAGGGAAA...............................................................................................................................................2117.0070200000000000000000101100000000000000000000000000000000000002000000000000000000
...................................................................................................AAATTGACTCTAGTAGGGAGTCAA............................................................................................................................................2416.0060001000000000020010100100000000000000000000000000000000000000000000000000000000
..................................................................................................CAAATTGACTCTAGTAGGGAGTCT.............................................................................................................................................2416.0060020000000000000110001000000000000000000000000000000000000001000000000000000000
.....................................................................................................ATTGACTCTAGTAGGGAGTCT.............................................................................................................................................2116.0060000000000000010300000000000000001000001000000000000000000000000000000000000000
.......................................................................................................................................CTCCCTAACGGAGTCAGATTC...........................................................................................................2116.0060000000000000002000000000000000000000000000000000000000000004000000000000000000
...................................................................................................AAATTGACTCTAGTAGGGAGTGT.............................................................................................................................................2316.0060000000000000000100000300000000000000000000000000000000000002000000000000000000
...................................................................................................AAATTGACTCTAGTAGGC..................................................................................................................................................1816.0060400000000000000000000000000000000000001000000000000000000001000000000000000000
...................................................................................................AAATTGACTCTAGTAGGGAGTCCT............................................................................................................................................2415.0050000000000000020000001100000010000000000000000000000000000000000000000000000000
........................................................................................................................................TCCCTAACGGAGTCAGATT............................................................................................................1915.0050130000000000000010000000000000000000000000000000000000000000000000000000000000
..................................................................................................CAAATTGACTCTAGTAGGGA.................................................................................................................................................2015.0050000000000000001011000000000000000000000000000000000000000002000000000000000000
...................................................................................................AAATTGACTCTAGTAGGGG.................................................................................................................................................1915.0050100000000000000000000000000000000000000000000000000000000003100000000000000000
...................................................................................................AAATTGACTCTAGTAGGGAGTCCA............................................................................................................................................2415.0050000000000000000001200100000010000000000000000000000000000000000000000000000000
..................................................................................................CAAATTGACTCTAGTAGGGAGTTT.............................................................................................................................................2415.0050110000000000001110000000000000000000000000000000000000000000000000000000000000
.....................................................................................................ATTGACTCTAGTAGGGAG................................................................................................................................................1815.0050040000000000000000000000000000000000000000000000000000000001000000000000000000
...................................................................................................AAATTGACTCTAGTAGGGAGTCTC............................................................................................................................................2414.0040000000000000000000100000000010101000000000000000000000000000000000000000000000
...................................................................................................AAATTGACTCTAGTAGGGAGTAA.............................................................................................................................................2314.0040000000000000001101100000000000000000000000000000000000000000000000000000000000
droMoj3
TAT---ACGC------------TACGA-------------------------------------------------------GTTTCCTCATGCAGTTCAAATTGACTCTAGTAGGGAGTCCTTTTTTTTAACGACTCCCTAACGGAGTCAGATTGAATTTCAGAGGACCCAG-ACAACGAAGAAGCG-CGAGCACAAATGCAAATAATGGTATACAGTGGAATAAAAAATTAATAA----GTGAATCCAATTTA-CAGTGGTSizeHit CountTotal NormTotalM046

Female-body		V041

Embryo		V049

Head		V056

Head		M060

Embryo		V110

Male-body
...................................................................................................AAATTGACTCTAGTAGGGAGT...............................................................................................................................................21117995.0017995242347425877363495063
...................................................................................................AAATTGACTCTAGTAGGGAGTC..............................................................................................................................................22112606.0012606350227322964771483840
.......................................................................................................................................CTCCCTAACGGAGTCAGATTG...........................................................................................................2117028.007028425528013708089
...................................................................................................AAATTGACTCTAGTAGGGAGTCT.............................................................................................................................................2311765.001765999453979124101
...................................................................................................AAATTGACTCTAGTAGGGAG................................................................................................................................................201755.0075564119636919106
...................................................................................................AAATTGACTCTAGTAGGGAGTCA.............................................................................................................................................231515.00515242172293717
...................................................................................................AAATTGACTCTAGTAGGGAGTCC.............................................................................................................................................231252.002527461779211
..................................................................................................CAAATTGACTCTAGTAGGGAGT...............................................................................................................................................221238.0023821037751293
.......................................................................................................................................CTCCCTAACGGAGTCAGATTGA..........................................................................................................221190.00190463478671
........................................................................................................................................TCCCTAACGGAGTCAGATTGA..........................................................................................................211141.00141134536731
...................................................................................................AAATTGACTCTAGTAGGGAGTCG.............................................................................................................................................231120.0012091346907
...................................................................................................AAATTGACTCTAGTAGGGAGC...............................................................................................................................................211116.00116011722715
........................................................................................................................................TCCCTAACGGAGTCAGATTG...........................................................................................................201112.00112420333502
....................................................................................................AATTGACTCTAGTAGGGAGTC..............................................................................................................................................211109.001094121132221
...................................................................................................AAATTGACTCTAGTAGGGA.................................................................................................................................................191104.001041113039023
....................................................................................................AATTGACTCTAGTAGGGAGT...............................................................................................................................................20189.00891501540217
.....................................................................................................ATTGACTCTAGTAGGGAGTC..............................................................................................................................................20163.0063701027190
.......................................................................................................................................CTCCCTAACGGAGTCAGATT............................................................................................................20156.0056200151902
...................................................................................................AAATTGACTCTAGTAGGGAGTTT.............................................................................................................................................23156.005640182815
.....................................................................................................ATTGACTCTAGTAGGGAGT...............................................................................................................................................19146.004660121837
..................................................................................................CAAATTGACTCTAGTAGGGAGTC..............................................................................................................................................23145.00452135331
...................................................................................................AAATTGACTCTAGTAGGGAGTT..............................................................................................................................................22143.004301142314
...................................................................................................AAATTGACTCTAGTAGGGAGG...............................................................................................................................................21139.003901112412
...................................................................................................AAATTGACTCTAGTAGGG..................................................................................................................................................18132.00326091520
.......................................................................................................................................CTCCCTAACGGAGTCAGATTGT..........................................................................................................22126.00261091411
...................................................................................................AAATTGACTCTAGTAGGGAGTTA.............................................................................................................................................23124.00240051513
......................................................................................................................................ACTCCCTAACGGAGTCAGATTGA..........................................................................................................23124.00241301820
...................................................................................................AAATTGACTCTAGTAGGGT.................................................................................................................................................19124.00240031308
...................................................................................................AAATTGACTCTAGTAGGGAGTA..............................................................................................................................................22123.00230051440
.......................................................................................................................................CTCCCTAACGGAGTCAGATTT...........................................................................................................21119.00190015400
...................................................................................................AAATTGACTCTAGTAGGGAGA...............................................................................................................................................21118.0018105912
.....................................................................................................ATTGACTCTAGTAGGGAGTCT.............................................................................................................................................21114.0014007610
......................................................................................................................................ACTCCCTAACGGAGTCAGATTG...........................................................................................................22114.0014903200
......................................................................................................TTGACTCTAGTAGGGAGTC..............................................................................................................................................19112.0012203070
....................................................................................................AATTGACTCTAGTAGGGAGTCC.............................................................................................................................................22112.0012301620
...................................................................................................AAATTGACTCTAGTAGGGAGTTG.............................................................................................................................................23112.0012105600
....................................................................................................AATTGACTCTAGTAGGGAGTCT.............................................................................................................................................22112.0012800310
.......................................................................................................................................CTCCCTAACGGAGTCAGATTGAA.........................................................................................................23111.0011502310
.....................................................................................................ATTGACTCTAGTAGGGAGTCC.............................................................................................................................................21111.0011006401
.......................................................................................................................................CTCCCTAACGGAGTCAGATTA...........................................................................................................21110.0010006400
.......................................................................................................................................CTCCCTAACGGAGTCAGATTGAT.........................................................................................................23110.0010004600
....................................................................................................AATTGACTCTAGTAGGGAG................................................................................................................................................1919.009601200
...................................................................................................AAATTGACTCTAGTAGGT..................................................................................................................................................1817.007004300
......................................................................................................TTGACTCTAGTAGGGAGT...............................................................................................................................................1816.006101112
...................................................................................................AAATTGACTCTAGTAGGGAT................................................................................................................................................2016.006002301
...................................................................................................AAATTGACTCTAGTAGGGAGTCTA............................................................................................................................................2416.006101400
...................................................................................................AAATTGACTCTAGTAGGGAGTG..............................................................................................................................................2215.005010310
...................................................................................................AAATTGACTCTAGTAGGGAGTGT.............................................................................................................................................2315.005005000
..................................................................................................CAAATTGACTCTAGTAGGGAGTCT.............................................................................................................................................2415.005101030
.......................................................................................................................................CTCCCTAACGGAGTCAGAT.............................................................................................................1915.005100130
........................................................................................................................................TCCCTAACGGAGTCAGATT............................................................................................................1914.004002200
...................................................................................................AAATTGACTCTAGTAGGGAA................................................................................................................................................2014.004101101
...................................................................................................AAATTGACTCTAGTAGGGAGGA..............................................................................................................................................2214.004001120
.........................................................................................................................................CCCTAACGGAGTCAGATTG...........................................................................................................1914.004201100
.......................................................................................................................................CTCCCTAACGGAGTCAGATTC...........................................................................................................2114.004100300
....................................................................................................AATTGACTCTAGTAGGGAGTCA.............................................................................................................................................2214.004301000
droGri2
TCCTCAATGT------------TA-----TTTGAAAGTGTGCCCCC-----------------------------GA-----ACTTCCTGCTGCAGTTCAAATTGACTCTAGTAGGGAGTCCTTTTAACGAGCGACTCCCTAACGGAGTCAGATTGAGTTACAAAGGACCAAG-TCAACAATGCCCCA-GTG-----------------------------------------A---TACAA----------GTGTTACAAATSizeHit CountTotal NormTotalM041

Female-body		V109

Male-body
...................................................................................................AAATTGACTCTAGTAGGGAGT...............................................................................................................................................2113522.0035222163306
...................................................................................................AAATTGACTCTAGTAGGGAGTC..............................................................................................................................................221739.00739264475
...................................................................................................AAATTGACTCTAGTAGGGAG................................................................................................................................................201108.001085058
...................................................................................................AAATTGACTCTAGTAGGGAGTCT.............................................................................................................................................23169.00693633
....................................................................................................AATTGACTCTAGTAGGGAGT...............................................................................................................................................20163.00632043
....................................................................................................AATTGACTCTAGTAGGGAGTC..............................................................................................................................................21137.0037334
...................................................................................................AAATTGACTCTAGTAGGGA.................................................................................................................................................19119.0019415
.......................................................................................................................................CTCCCTAACGGAGTCAGATTG...........................................................................................................21119.0019163
...................................................................................................AAATTGACTCTAGTAGGGAGTCC.............................................................................................................................................23119.0019127
...................................................................................................AAATTGACTCTAGTAGGGAGTCA.............................................................................................................................................23116.001697
..................................................................................................CAAATTGACTCTAGTAGGGAGT...............................................................................................................................................22115.0015114
.......................................................................................................................................CTCCCTAACGGAGTCAGATTGA..........................................................................................................22112.0012111
.....................................................................................................ATTGACTCTAGTAGGGAGT...............................................................................................................................................19110.001037
...................................................................................................AAATTGACTCTAGTAGGGAGTT..............................................................................................................................................2218.00817
....................................................................................................AATTGACTCTAGTAGGGAG................................................................................................................................................1917.00743
...................................................................................................AAATTGACTCTAGTAGGGAGTTT.............................................................................................................................................2315.00532
...................................................................................................AAATTGACTCTAGTAGGGT.................................................................................................................................................1914.00413
...................................................................................................AAATTGACTCTAGTAGGGAGC...............................................................................................................................................2114.00404
...................................................................................................AAATTGACTCTAGTAGGG..................................................................................................................................................1813.00330
.....................................................................................................ATTGACTCTAGTAGGGAGTC..............................................................................................................................................2013.00321
..................................................................................................CAAATTGACTCTAGTAGGGAGTC..............................................................................................................................................2313.00321
.......................................................................................................................................CTCCCTAACGGAGTCAGATT............................................................................................................2012.00220
......................................................................................................TTGACTCTAGTAGGGAGTC..............................................................................................................................................1912.00211
...................................................................................................AAATTGACTCTAGTAGGGAGTA..............................................................................................................................................2212.00211
........................................................................................................................................TCCCTAACGGAGTCAGATTG...........................................................................................................2012.00211
...................................................................................................AAATTGACTCTAGTAGGGAGTCG.............................................................................................................................................2312.00220
........................................................................................................................................TCCCTAACGGAGTCAGATTGA..........................................................................................................2112.00211
...................................................................................................AAATTGACTCTAGTAGGGAA................................................................................................................................................2012.00202
......................................................................................................TTGACTCTAGTAGGGAGT...............................................................................................................................................1812.00211
...................................................................................................AAATTGACTCTAGTAGGGAGA...............................................................................................................................................2111.00101
....................................................................................................AATTGACTCTAGTAGGGAGTCCT............................................................................................................................................2311.00110
.................................................................................................TCAAATTGACTCTAGTAGGGAGTC..............................................................................................................................................2411.00101
.......................................................................................................................................CTCCCTAACGGAGTCAGATTGC..........................................................................................................2211.00110
........................................................................................................................................TCCCTAACGGAGTCAGATTGAAA........................................................................................................2311.00110
.......................................................................................................................................CTCCCTAACGGAGTCAGA..............................................................................................................1811.00110
...................................................................................................AAATTGACTCTAGTAGGGAGTCCA............................................................................................................................................2411.00110
.....................................................................................................ATTGACTCTAGTAGGGAGTCT.............................................................................................................................................2111.00110
........................................................................................................................................TCCCTAACGGAGTCAGATTGAG.........................................................................................................2211.00101
......................................................................................................TTGACTCTAGTAGGGAGTCT.............................................................................................................................................2011.00110
....................................................................................................AATTGACTCTAGTAGGGAGTCA.............................................................................................................................................2211.00110
.......................................................................................................................................CTCCCTAACGGAGTCAGATTGAG.........................................................................................................2311.00101
..................................................................................................CAAATTGACTCTAGTAGGGA.................................................................................................................................................2011.00110
....CAATGT------------TA-----TTTGAAAGTGTGC.............................................................................................................................................................................................................................2111.00110
....................................................................................................AATTGACTCTAGTAGGGAGTCT.............................................................................................................................................2211.00110

Generated: 10/20/2015 at 10:14 PM