ID:

der_562

 Coordinate:

scaffold_4770:6181745-6181895 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-23.1 -23.1 -23.1

Flybase annnotation

exon [dere_GLEANR_1594:14]; CDS [Dere\GG15908-cds]; intron [Dere\GG15908-in]

Repeatable elements

NameClassFamilyStrand
DNAREP1_DMRCHelitron+
Hoyak2DNAhAT-Ac+
mature
  1. scaffold_3638:1778-1800 +
  2. scaffold_4512:432061-432083 +
  3. der_562  scaffold_4770:6181805-6181827 +
  4. scaffold_4770:11073747-11073769 +
  5. scaffold_4770:11685770-11685792 +
  6. scaffold_4770:12778832-12778854 +
  7. scaffold_4784:10613477-10613499 +
  8. scaffold_4784:15528239-15528261 +
  9. scaffold_4784:16530187-16530209 +
  10. scaffold_4784:17310114-17310136 +
  11. scaffold_4784:22833089-22833111 +
  12. scaffold_4820:1595357-1595379 +
  13. scaffold_4845:731021-731043 +
  14. scaffold_4845:2291429-2291451 +
  15. scaffold_4845:15559306-15559328 +
  16. scaffold_4929:1471117-1471139 +
  17. scaffold_4929:1669246-1669268 +
  18. scaffold_4929:14892019-14892041 +
  19. scaffold_4929:15737488-15737510 +
  20. scaffold_4929:20823276-20823298 +
star

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
CCGACCATATAAAGTCATATTCATTATCAGCATCAATAGCAGAACTTACTTTTTTCCCAATTTCTACTGATATTCCAGAAAATGTTGAAATTTCACGTTTGCACTTCCACTAGCTGAGTAACGGGTATCTGATAGTCGGGGAACTCGACTATAGCATTCTATCTTGTTTTGCTTATAAACTTGACTTACCGTACGTTTCAGAGCGTGCGAAGCGTTGCAGTTCGGTGCTCCAGACGCCAGTTGACCAGGAC
**************************************************................(((......))).((((((.((....)))))))).............(((((..((((....(((.((((((((...))))))))))).......((..((((.......))))..))....))))....)))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total GSM1528801
follicle cells		 M055
female body
 V040
embryo
..............................................................................................................TAGCTGAGTAACGGGTATCTGAT...................................................................................................................... 23 0 20 1.25 25 25 0 0
..................................................................................................................TGAGTAACGGGTATCTGATAGTCGGG............................................................................................................... 26 0 20 1.15 23 23 0 0
....................................................................................................................................................................................................TTTTGAGCGTGCGAAGCGTTGCAGTTCG........................... 28 2 1 1.00 1 0 1 0
....................TCATTATCAGCATTAATAGCAGAACT............................................................................................................................................................................................................. 26 1 1 1.00 1 0 1 0
..................................................................................................................TGAGTAACGGGTATCTGATAGTCGG................................................................................................................ 25 0 20 0.80 16 16 0 0
.................................CAATAGCAGAACTTTCTCTCT..................................................................................................................................................................................................... 21 3 2 0.50 1 0 0 1
..............................................................................................................................ATCTGATAGTCGGGGAACTCGA....................................................................................................... 22 0 20 0.05 1 0 1 0
........................................................................................................................................................................................................................GCAGTATGCTGCTCCAGAC................ 19 3 20 0.05 1 0 0 1

Anti-sense strand reads

GGCTGGTATATTTCAGTATAAGTAATAGTCGTAGTTATCGTCTTGAATGAAAAAAGGGTTAAAGATGACTATAAGGTCTTTTACAACTTTAAAGTGCAAACGTGAAGGTGATCGACTCATTGCCCATAGACTATCAGCCCCTTGAGCTGATATCGTAAGATAGAACAAAACGAATATTTGAACTGAATGGCATGCAAAGTCTCGCACGCTTCGCAACGTCAAGCCACGAGGTCTGCGGTCAACTGGTCCTG
**************************************************................(((......))).((((((.((....)))))))).............(((((..((((....(((.((((((((...))))))))))).......((..((((.......))))..))....))))....)))))************************************************** 		Read size # Mismatch Hit Count Total Norm Total M055
female body
 M057
embryo
.................CAAAGTAATAGTAGTAGTTATCG................................................................................................................................................................................................................... 23 3 6 0.17 1 1 0
.............................................................................CTTTTACACCTTTGAAGTGC.......................................................................................................................................................... 20 2 20 0.05 1 0 1
...............................................................................................................TCGACTCATTGCCCATAGACTA...................................................................................................................... 22 0 20 0.05 1 1 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droEre2 scaffold_4770:6181695-6181945 + der_562 CCGACCATATAAAGT----------CATATTCATTATCAGCATCAATAGCAGA---ACTTACTTTT---------------------TTCCCAATTTCTACTGATATTCCAG----------------------------------------AAA--------------------------------------ATGTTGAA-------------------------ATT-----------------------------------------------------------------------------------------------TC-------------------ACGTTTG-------------------CACTTCCA---------------------------------CTAGCTGAGTAACGGGTATCTGATAGTCGGGG----A-ACTCGACTATAGCA-TTCT------------ATCTTGT-----------TTTGCT-----TATAAAC------------------------------------------------TTGACT--TA-CCGTACGTTTCAGAGCGTGCGAA-----------------------------------------------------GCGTTGCAGTTCGGTGCTCCAGAC------GCCAGTTGACCAGGAC
droYak3 3R:257733-257942 + TCTACT-------GTA-TA------TATATTCTTGATCAGGATCAATAGCCGA---GTCGATCTGTCCATATT------------------------------------------------------------CGTCT------------------GTCCGTCC--------------GTATGAACG---------TCGAGATCTCAGGAACTACAAAA---------------------------------------------------------------------------------------------------------------------------------------------------------------G---------------------------------CTAGCTGAGTAACGGGTATCAGATAGTCGGGG----A-ACTCGACTATAGCG-TTCT------------TCCTTGT-----------TTTTCTTTCAA-TAGCTTG------TCTCGCTTCATATGCCACGGAGA-------------------------------CTGTAA---------------------------------------------------------------------------------------------------------------TGC
droSec2 scaffold_8:3611253-3611455 + TTATTCCCC-----------------------------------------------------------------------------------AATATCTAACGATATCCCAG----------------------------------------AAAA-------------------------------------ATGGT-AA-------------------------ATT-----------------------------------------------------------------------------------------------TC-------------------GCGTTCG-------------------CATTCACA---------------------------------CTAGTTGAGTAACGGGTATCTGATAGTCAGGC----A-ACTTGACTATAGCA-TTCT------------CTCTTCT-----------TTTGA------AATACAT------------------------------------------------TTGACATTCG-CAGT-------TCATTTTGTGACGCTTTAGAATTTCAGGGGATTT-----------------ACCTCAGTTT-----------------------------------TAAGCTGCCAAAGAT
droSim2 x:20030934-20031137 + TTATTCCCC-----------------------------------------------------------------------------------AATATCTAACGATATTCCAG----------------------------------------AAAA-------------------------------------ATGGTGAA-------------------------ATT------------------------------------------------------------------------------------------------------------------------TCG-------------------CATTCACA---------------------------------CTAGTTGAGTAACGGGTATCTGATAGTCAGGC----A-ACTTGACTATAGCA-TTCT------------CTCTTCT-----------TTTGA------AATACAT------------------------------------------------TTGACATTCA-CAGT-------TCATTTTGTGACGCTTTAGAGTTTCAGGGGATTTAAG-----------GGTACCTCAGTTT-----------------------------------TATGCTGCCAAAGAT
dm3 chr3L:22014164-22014439 - CCGAGCCTATACAGTA-TA------TATATTTTTGATCAGGATCACTAGCAGA---GTCGATCTGTTCTTATTCTTAATATTTTTTCTTGCCAATTTTAATCGATATTTAAC----------------------------------------ATAC-------------------------------------ATTCTGCA-------------------------ATA-----------------------------------------------------------------------------------------------TC-------------------TCTTTCA-------------------CACCTCGA---------------------------------CTAACTGAGTAACGGGTATCTGTTAGTCGAGC----A-ACTCTACCATAGCG-TTCT------------CTCGTGT-----------CTTAT------TATACGT------------------------------------------------TCCACA-------------------------------------CAGCTTACAGTTTCTGAATTAAAAGTTAATTACTGTG-----AAATGTTACA-TTCTGTGCCATAGGT------A------------CCA
droEug1 scf7180000408784:1978-2280 + CTGGCCCTATAAAGTA-TT------TATATTCTTGAACAGGATCAATAGCGAT---GTCGACCAAGCCATGTC------------------------------------------------------------CATCT------------------GTCCGTCCGTCCGTCT--GTCCGTATGAACG---------CTGAGATCTCAGGAACTAGAAGA-------GTAG-TAGTACAGAGAGAGATTAAGCACGCAAATTTTAAAA----------------------------------------------------------------------------------TT--------------------------GT---------------------------------GTAAAACAGTAACGGGTATCTTATAGTCGCGG----A-ACACGACTATAGCG-TTTA------------TTCTTGT-----------TTTGA------GTTGGATTCACACCTGTCAGTATAT----TTGTTGCA-------------------------------CTATATC-----------------------------------------------------------------------------TTGGTGTTGCTGTGGACTTTGGCTGGAGAGCGGGAG
droBia1 scf7180000302155:977968-978203 + CCGACCCCATAAAGTA-TG------TATATTCTTGATCAGGTG------------------------------------------------------------GCGCCCTAA----------------------------------------AATATAGTTTTGGT---GCT------------------------------------------------------------------------------------------------CG---------------------------------------------------------------AGTATCTTCACTTCCCTTT-------------------TGCTCCCT---------------------------------TAAGCTGAGTAACGGGTATCTGATAGTCCAGG----C-ACTCGGCTATCGCG-TTCC------------TCCTTGG-----------GAAAGT-----TGAAA-A-------------------------------------------------------CCT------------------------------GCATACACTGAGTTTTTAAAAACACACGCAGTTTTCCCTG-----AAAAGCAATG-TTAGGTTTTACAGAA------GC---------CGGCT
droTak1 scf7180000415212:54474-54699 + CCGACCCCATAAAGTTATA------CCT-----------------------------------------------------------------------ATCGAAATGTAGAAGACATTTTTCAAATCGAACCA-T--------------------TCATT-------------------------------------A-------AAAAGTTAT----ACGCAAT----CAAG-----------------------------AAAATTG---------------------------------------------------------------TATATATCCATCTCCTTCG-------------------CACTCCTT---------------------------------TTAGCCGAGTGACGGGTATTGGATAGTCGGGACTCCA-ACCCGACTATAGCG-TTCT------------CTCTTGT-----------TTTTA------GTTATAT------------------------------------------------TTGACT--GT-GCGCAAGCTTTTTATTATGGGT------------------------------------------------------------------------------------------------AGCG
droEle1 scf7180000491028:2328161-2328441 - TCGACCCTATAAGGTA-TA------TGTGTTCAAGATCTCGGAAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------CTATGCAA-------G---CAAA-----------------------------AGAGTTGCACATTCAAGTTCTACTAATTCCAGTTTACTTCAAATATTGGAGTACACCAATAAATGTAATG------------CGCACAGGGCGTGGCTACCACTGGTAAAAAATTT---------------------ACATT-------GAAACAGGCTAATGGGTATCTGATAGTCGAGG----C-ACTCAACTATATCA-TTTA------------TTCTTGT-----------TTATTA-----TGTAGCT-------------------------------------------------------------------------------------GTTGCATATGATTGGCTTTTTG-----------TGTTTCTCTGCGTTTGCATGTTG-----------------------------------CATTT
droRho1 scf7180000771332:13183-13350 - CCGACCCTATAAAGTA-TA------TATATTCTTGTTCAGGATCACTAGCCGA---GTCGATCTAGCCATGTC------------------------------------------------------------CGTGA---------------TCA-------------------------------------AAG------------------------------------------------------------------------TT---------------------------------------------------------------TCTATCTCCATCTCCCTCG-------------------CACTCCCT---------------------------------TTACCTGAGTAACGGGTATCTGATAGTCGGGG----C-ACCCGACTATAGCG-TTCT------------CTCTTGT-----------TTTGT------TT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droFic1 scf7180000451914:675-840 - GCGACCCCAGAAAGTA-TAT-AGTATATATTCCTGATCCGGATCATCAGACGA---GTCGACTTATAAGTATA------------------------------------------------------------AGTTG------------------AC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACACCTTTTGGCAACGTTTAACTAAGTAACCAGTATCTAATAGTCGAAG----C-TCTCGACTGTTGCT-TTTC------T-----TTATTGT-----------TTTAA------TTAGCAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTT
droKik1 scf7180000302461:751729-751834 + CCGACCCTATAAAGTA-TA------TATATTCTTGATCAGCATCAACAGGGGA---ATCTTTCTAGATATGTC------------------------------------------------------------TGGAA----------------G--------------------------------------AAATCGA---------------------------------------------------------------------T---------------------------------------------------------------TTTTTG--------------------------------------------------------------------------------------------------------------------------GC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CATTTT-----------------------------------TGCATTAAAATTAGC
droAna3 scaffold_12916:13144355-13144500 - TTGACCATATAAGGTT-ATTTAAGGTA-------------------TAGTCGA------GATAGAGCCATGTC------------------------------------------------------------CTTTC------------------ATGTT-------------------------------------A-------AGAAAGTGC----GTTCA------------------------------------------------------------------------------------------------------------------------------------------------------GTGGA---------------------------------TGAGAAGAGTACCGGGTATCAAATAGTCGAAC----A-ATGCAACTACAGCC-TTCC------TT----ACTTTAC-----------TTTAT-------T---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAT
droBip1 scf7180000396574:95620-95750 + --GACCCCATAAAGTA-TAT--GTATATATTCTTGATCAGCATCAACTGCCGA---GTCGATATAGCCATGCC------------------------------------------------------------ATATATCATGGAGATTCCTATA--------------------------------------ATGCTG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAA------------TGATGGGA----A-ACTCGTTTATAGCG-TCCT------------TTCTTGT-----------T------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
dp5 3:8177040-8177165 - CCGACCCCATAAAGTA-TA------TATATTCTTGATCAGCATCAATAGCCGA---GACGATATAGCCATGTC------------------------------------------------------------TTTCT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTTTCTCTCTTCTTTTC-TTTGAAAAAGTAT------------------------------------------------TTGAGAACCTCCTAT-------TTATTTTTTC---------------------------------------------------------------------------------------------------AC
droPer2 scaffold_0:2391916-2392092 + CCGACCCCATTAAGTA-AA------TATATTCCTTATCAGCATCATTAGCCGA---GTCGATATAGACAGGC-----------------------------------------------------------------A------------------GACTGTCCGTCT------GACTTTTTTGACG---------CCTAGTACTCATTA----------------TTA-----------------------------------------------------------------------------------------------TA-------------------ACCAGAA-------------------GGGGCAAATTGACCTTTCATGGGCATACTCTTTCCCAAATACTGACTGAGTATCGGGGATGTG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droWil2 scf2_1100000004934:77022-77188 + CCGACCCCACAAAGTA-TA------TATATTCTTGATCAGGATCAACAACCGA---GTCGATCTAGCCATGTC------------------------------------------------------------CAGTCGGAAAGAAAT-------------------------------------------------------------------------------TT-----------------------------------------------------------------------------------------------CA-------------------ACGCTTG-------------------ACTCTCCT---------------------------------TT-GGTTAGTGAAGTGA-------AATAGAGG----T-GTTCGGTTACTCCA-CTCT------------GTCCCTT---------------------------------------------------------------ACTTCGTTATGAATTTT-------------------------------------------------------------------------------------------------------------------------------GCT
droVir3 scaffold_12822:1241867-1242130 + dvi_2440 CCGACCCCGTAAAGTA-----------TATTTTTGATCGACGCGATGAGCTGATGAGATGGTTTATCTAGCTA-------------------------------AGGCCTAG-------------------TCCTTTG------------------GCATT-------------------------------------T-------AGACTG---------------TCA-TA-TTCAGACCCTGTC-CATTTCATAAAGTTTGGAA----------------------------------------------------------------------------------TCG-------------------CTTCC------------------------------------------AA-ATCAGGGTACCTCCTAGTCGGGC----ATTTCCGATTAGAACACTTGC------TA----TTTTTGT-----------TTAAT-------TTGTATT------CCGCATTTCAGATA----TTGCACCTTTCAACGTAATGAG-----------------------------------------------------------------------------------------------------------CCGTGCAGCCTACCGGCAATTGTGGAA
droMoj3 scaffold_6540:10121880-10122097 + CAGACCCCACAAAGTA-TA------TATATTCTTGATCAGGGCGACGAGCTGA---GTCGATTTGGCACTGTC------------------------------------------------------------CGTCT------------------GTCTGTCCGTCCG------TATGTATGAACG---------CGTCGATCTCAGAAGATATAAGA-------ATAT-CAG-----------------------------------------------------------------------------------------------------------------AAT-----------------------ATCAGA---------------------------------TTAGAGGA-TTCAGGGTATCTCCTAGTCGAGC----AGTCTCGACTAGAGTT-TTCT------------TACTTGT-----------TGTAA--------TATAT----------------------TTAATATA-------------------------------ATATGTT--------------------------------------------------------------------------------------------------------------TCA
droGri2 scaffold_15126:8353561-8353786 - GCGTCCGCATAAAGTA-TG------TATATTTTTAATCAGGATCAAGAGCCGA---GTTGATGTAGCCATATC------------------------------------------------------------CGTCC------------------GTCTTTCGGTCAAGCTCAAGTTTATTTAATTTGAGAAATTTAGCA-------------------------ATA-----------------------------------------------------------------------------------------------TA-------------------ACTAGAA-------------------TAAATTTA---------------------------------ACAACTGGGTTCAGGGTATATCGTAGTCAAGC----TCACTCGACTACATCA-TTCTAACAAGTTTTTTTTCTTCT-----------TGTG-------------T----------------------TTGGTACC-------------------------------ATACGA---------------------------------------------------------------------------------------------------------------TTC

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droEre2
CCGACCATATAAAGT----------CATATTCATTATCAGCATCAATAGCAGA---ACTTACTTTT---------------------TTCCCAATTTCTACTGATATTCCAG----------------------------------------AAA--------------------------------------ATGTTGAA-------------------------ATT-----------------------------------------------------------------------------------------------TC-------------------ACGTTTG-------------------CACTTCCA---------------------------------CTAGCTGAGTAACGGGTATCTGATAGTCGGGG----A-ACTCGACTATAGCA-TTCT------------ATCTTGT-----------TTTGCT-----TATAAAC------------------------------------------------TTGACT--TA-CCGTACGTTTCAGAGCGTGCGAA-----------------------------------------------------GCGTTGCAGTTCGGTGCTCCAGAC------GCCAGTTGACCAGGACSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
.............................................................................................................................................................................................................................................................................................................................................................................................................................TAGCTGAGTAACGGGTATCTGAT......................................................................................................................................................................................................................................................................23201.252500000025
.................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGTAACGGGTATCTGATAGTCGGG...............................................................................................................................................................................................................................................................26201.152300000023
.................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGTAACGGGTATCTGATAGTCGG................................................................................................................................................................................................................................................................25200.801600000016
.............................................................................................................................................................................................................................................................................................................................................................................................................................................ATCTGATAGTCGGGG----A-ACTCGA..................................................................................................................................................................................................................................................22200.0511000000
droYak3
TCTACT-------GTA-TA------TATATTCTTGATCAGGATCAATAGCCGA---GTCGATCTGTCCATATT------------------------------------------------------------CGTCT------------------GTCCGTCC--------------GTATGAACG---------TCGAGATCTCAGGAACTACAAAA---------------------------------------------------------------------------------------------------------------------------------------------------------------G---------------------------------CTAGCTGAGTAACGGGTATCAGATAGTCGGGG----A-ACTCGACTATAGCG-TTCT------------TCCTTGT-----------TTTTCTTTCAA-TAGCTTG------TCTCGCTTCATATGCCACGGAGA-------------------------------CTGTAA---------------------------------------------------------------------------------------------------------------TGCSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
..............................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGATAGTCGGGG----A-ACTCGACTAT..............................................................................................................................................................................................................................................25200.45900000000009
............................................................................................................................................................................................................................................................................................................................................................................................................................................TATCAGATAGTCGGGG----A-ACTCGA..................................................................................................................................................................................................................................................23200.20404000000000
.................................................................................................................................................................TCC--------------GTATGAACG---------TCGAGATCT.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.20404000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGTAACGGGTATCAGATAGT...................................................................................................................................................................................................................................................................22200.20400000000004
.........................................................................................................................................T------------------GTCCGTCC--------------GTATGAACG---------TCGAGATC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.15300300000000
.........................................................................................................................................T------------------GTCCGTCC--------------GTATGAACG---------TCGAGA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.10202000000000
.........................................................................................................................................................................................CG---------TCGAGATCTCAGGAACTAC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.10200200000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................G----A-ACTCGACTATAGCG-TTCT------------T........................................................................................................................................................................................................................21200.05101000000000
..................A------TATATTCTTGATCAGGATC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.05101000000000
.....T-------GTA-TA------TATATTCTTGATCAGGAT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.05101000000000
.....................................................................................................................................................................................TGAACG---------TCGAGATCTCAGGAACTACAAA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................28200.05100100000000
..............................TCTTGATCAGGATCAATAGCCGA---GT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.05100000010000
............................ATTCTTGATCAGGATCAATAGCCGA---GT................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.05101000000000
.............GTA-TA------TATATTCTTGATCA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.05101000000000
.....T-------GTA-TA------TATATTCTTGATCAGGATCAAT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................28200.05101000000000
.................TA------TATATTCTTGATCAGGATCAATAGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.05101000000000
droSec2
TTATTCCCC-----------------------------------------------------------------------------------AATATCTAACGATATCCCAG----------------------------------------AAAA-------------------------------------ATGGT-AA-------------------------ATT-----------------------------------------------------------------------------------------------TC-------------------GCGTTCG-------------------CATTCACA---------------------------------CTAGTTGAGTAACGGGTATCTGATAGTCAGGC----A-ACTTGACTATAGCA-TTCT------------CTCTTCT-----------TTTGA------AATACAT------------------------------------------------TTGACATTCG-CAGT-------TCATTTTGTGACGCTTTAGAATTTCAGGGGATTT-----------------ACCTCAGTTT-----------------------------------TAAGCTGCCAAAGATSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
............................................................................................................................................................................................................................................................................................................................................................................................................................................TATCTGATAGTCAGGC----A-ACTTGAC.................................................................................................................................................................................................................................................2411.0011000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T------------CTCTTCT-----------TTTGA------AATACAT------------------------------------------------TTGACATT.............................................................................................................................2811.0011000
.....................................................................................................................................................................................................................................................................................................................................................................................TTCACA---------------------------------CTAGTTGAGTAACGGGT.............................................................................................................................................................................................................................................................................2351.0052120
.....................................................................................................................................................................................................................................................................................................................................................................................TTCACA---------------------------------CTAGTTGAGTAACGGGTA............................................................................................................................................................................................................................................................................2451.0054010
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTGTGACGCTTTAGAATTTCAGGG..................................................................................2511.0010010
...................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGTCAGGC----A-ACTTGACTATAGC...........................................................................................................................................................................................................................................2311.0011000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGACTATAGCA-TTCT------------CTCTTCT-----------TTTGA------............................................................................................................................................................................................2711.0011000
..................................................................................................................................................................................................TGGT-AA-------------------------ATT-----------------------------------------------------------------------------------------------TC-------------------GCGTTCG-------------------CATTCACA---------------------------------C.............................................................................................................................................................................................................................................................................................2711.0010010
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACATTCG-CAGT-------TCATTTTGTGACGCTT...............................................................................................2811.0011000
....................................................................................................................................................................................................................................................................................................................................................................................ATTCACA---------------------------------CTAGTTGAGTAACGGGT.............................................................................................................................................................................................................................................................................2440.2511000
...................................................................................................................................................................................................................................TT-----------------------------------------------------------------------------------------------TC-------------------GCGTTCG-------------------CATTCACA---------------------------------CTAGT.........................................................................................................................................................................................................................................................................................2440.2511000
......................................................................................................................................................................................................................................................................................................................................................................................TCACA---------------------------------CTAGTTGAGTAACGGGTATCTG........................................................................................................................................................................................................................................................................2750.2011000
.....................................................................................................................................................................................................................................................................................................................................................................................TTCACA---------------------------------CTAGTTGAGTAACGGGTATC..........................................................................................................................................................................................................................................................................2650.2011000
.....................................................................................................................................................................................................................................................................................................................................................................................TTCACA---------------------------------CTAGTTGAGTAACGGGTAT...........................................................................................................................................................................................................................................................................2550.2010010
.....................................................................................................................................................................................................................................................................................................................................................................................TTCACA---------------------------------CTAGTTGAGTAACGGG..............................................................................................................................................................................................................................................................................2280.1310010
.....................................................................................................................................................................................................................................................................................................................................................................................TTCACA---------------------------------CTAGTTGAGTAACGG...............................................................................................................................................................................................................................................................................2180.1310010
.........................................................................................................................................................................................................................................................................................................................................................................................CA---------------------------------CTAGTTGAGTAACGGGTATCTG........................................................................................................................................................................................................................................................................24100.1011000
droSim2
TTATTCCCC-----------------------------------------------------------------------------------AATATCTAACGATATTCCAG----------------------------------------AAAA-------------------------------------ATGGTGAA-------------------------ATT------------------------------------------------------------------------------------------------------------------------TCG-------------------CATTCACA---------------------------------CTAGTTGAGTAACGGGTATCTGATAGTCAGGC----A-ACTTGACTATAGCA-TTCT------------CTCTTCT-----------TTTGA------AATACAT------------------------------------------------TTGACATTCA-CAGT-------TCATTTTGTGACGCTTTAGAGTTTCAGGGGATTTAAG-----------GGTACCTCAGTTT-----------------------------------TATGCTGCCAAAGATSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGTAACGGGTATCTGATAGTC..................................................................................................................................................................................................................................................................23204.5591000000000091000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGACTATAGCA-TTCT------------CTCTTCT-----------TTTGA------AA..........................................................................................................................................................................................2911.00100000000100000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGTAACGGGTATCTGATAGT...................................................................................................................................................................................................................................................................22200.8517000000160010000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGTAACGGGTATCTGATAGTCA.................................................................................................................................................................................................................................................................2480.38300000010110000000
....................................................................................................................................................................................................................................................................................................................................................................................ATTCACA---------------------------------CTAGTTGAGTAACGGG..............................................................................................................................................................................................................................................................................2330.33100000001000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................GTAACGGGTATCTGA.......................................................................................................................................................................................................................................................................15200.15300000000003000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................TAGTTGAGTAACGGGTATCTGATAG....................................................................................................................................................................................................................................................................2570.14100000000010000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGACTATAGCA-TTCT------------CTC......................................................................................................................................................................................................................18190.11200000000002000000
........................................................................................................................................................................................................................................................................................................................................................................................ACA---------------------------------CTAGTTGAGTAACGGGTA............................................................................................................................................................................................................................................................................21120.08100000000001000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGACTATAGCA-TTCT------------.........................................................................................................................................................................................................................16200.05100000000001000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTAACGGGTATCTGA.......................................................................................................................................................................................................................................................................17200.05100000010000000000
...............................................................................................................................................................................................................................................................................................................................................................G-------------------CATTCACA---------------------------------CTAGTA........................................................................................................................................................................................................................................................................................15200.05100000010000000000
dm3
CCGAGCCTATACAGTA-TA------TATATTTTTGATCAGGATCACTAGCAGA---GTCGATCTGTTCTTATTCTTAATATTTTTTCTTGCCAATTTTAATCGATATTTAAC----------------------------------------ATAC-------------------------------------ATTCTGCA-------------------------ATA-----------------------------------------------------------------------------------------------TC-------------------TCTTTCA-------------------CACCTCGA---------------------------------CTAACTGAGTAACGGGTATCTGTTAGTCGAGC----A-ACTCTACCATAGCG-TTCT------------CTCGTGT-----------CTTAT------TATACGT------------------------------------------------TCCACA-------------------------------------CAGCTTACAGTTTCTGAATTAAAAGTTAATTACTGTG-----AAATGTTACA-TTCTGTGCCATAGGT------A------------CCASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGTAACGGGTATCTGTTAGTCG.................................................................................................................................................................................................................................................................24316.675000000000000000000000000000000000000000001000001010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002001000000020000000000000000000000000000000000000000011000000005000000000000500000000000000000000000000001000000000000000000000000000000000000001000001700000000421000000000000002200000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGTAACGGGTATCTGTTAGT...................................................................................................................................................................................................................................................................2248.25330000000000000000000000000000000000010000000000100010100000000000000000000000000000000000000000000000000000000010000000000000000000000000000100000000110000000000000000000000000000000000000040000005000000000000000000001500001100000000000000000000000000000000000000000000000000000000000000000004300000000100000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................C-------------------TCTTTCA-------------------CACCTCGA---------------------------------CTAACTGAG.....................................................................................................................................................................................................................................................................................2514.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGTAACGGGTATCTGTTAGTC..................................................................................................................................................................................................................................................................2343.50140000000000000000000000000000000000000000000000000100100000000000000000000000000000000000000000000000000000000000000000000000000000001000000001000002000000000000000000000000000000000000000000000006000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000001000000000
.........TACAGTA-TA------TATATTTTTGATCAGGAT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2713.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTACCATAGCG-TTCT------------CTCGTGT-----------CTTAT------............................................................................................................................................................................................2812.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGTAACGGGTATCTGTTAG....................................................................................................................................................................................................................................................................2141.7570000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................TA------TATATTTTTGATCAGGATC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21201.20240000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000100000000000000100000000000000000000010000000000000001000000000100051000000040004000000000000000000000000000000000000000000000000000000000000000000000000030100000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGTAACGGGTATCTGTTAGTCGA................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCATAGCG-TTCT------------CTCGTGT-----------CTTAT------TA..........................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAGTAACGGGTATCTGTTAGT...................................................................................................................................................................................................................................................................2341.0040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000200000000000000000000000000
.........TACAGTA-TA------TATATTTTTGATCAGGA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................TTGATCAGGATCACTAGCAGA---GTC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................TAATCGATATTTAAC----------------------------------------ATAC-------------------------------------ATTC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................TTGATCAGGATCACTAGCAGA---GTCGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTACCATAGCG-TTCT------------CTCGTGT-----------CT.....................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGTAACGGGTATCTGTTAGTCGAC...............................................................................................................................................................................................................................................................2640.7530000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGTAACGGGTATCTGT.......................................................................................................................................................................................................................................................................1850.6030000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAGTAACGGGTATCTGTTAGTCG.................................................................................................................................................................................................................................................................2530.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............A-TA------TATATTTTTGATCAGGAT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.3060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000010004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............TA-TA------TATATTTTTGATCAGGAT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.2550000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGTAACGGGTATCTGTT......................................................................................................................................................................................................................................................................1940.2510000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAGTAACGGGTATCTGTTAGTC..................................................................................................................................................................................................................................................................2440.2510000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............A-TA------TATATTTTTGATCAGGATC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22190.2140000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000100000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTAACGGGTATCTGTTAGTCG.................................................................................................................................................................................................................................................................2350.2010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................CTAACTGAGTAACGGGTATCT.........................................................................................................................................................................................................................................................................21110.1820000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................GAGTAACGGGTATCTGTTAGTC..................................................................................................................................................................................................................................................................2260.1710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............AGTA-TA------TATATTTTTGATCAGGATC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25130.1520000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................AGTAACGGGTATCTGTTAGTC..................................................................................................................................................................................................................................................................2180.1310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000
.........................TATATTTTTGATCAGGATC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................TA------TATATTTTTGATCAGGAT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............TA-TA------TATATTTTTGATCAGGA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............GTA-TA------TATATTTTTGATCAGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................CTGAGTAACGGGTATCTGTTAGTGA.................................................................................................................................................................................................................................................................25120.0810000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................TAACTGAGTAACGGGTATCTG........................................................................................................................................................................................................................................................................21130.0810000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGTAACGGGTATCTGTTAGC...................................................................................................................................................................................................................................................................22140.0710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................TAACTGAGTAACGGGTATC..........................................................................................................................................................................................................................................................................19140.0710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............TA-TA------TATATTTTTGATCAGGATCA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24170.0610000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................AACGGGTATCTGTTAGTCGC................................................................................................................................................................................................................................................................20180.0610000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
..................A------TATATTTTTGATCAGGATCA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..............TA-TA------TATATTTTTGATCAGG.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.0510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEug1
CTGGCCCTATAAAGTA-TT------TATATTCTTGAACAGGATCAATAGCGAT---GTCGACCAAGCCATGTC------------------------------------------------------------CATCT------------------GTCCGTCCGTCCGTCT--GTCCGTATGAACG---------CTGAGATCTCAGGAACTAGAAGA-------GTAG-TAGTACAGAGAGAGATTAAGCACGCAAATTTTAAAA----------------------------------------------------------------------------------TT--------------------------GT---------------------------------GTAAAACAGTAACGGGTATCTTATAGTCGCGG----A-ACACGACTATAGCG-TTTA------------TTCTTGT-----------TTTGA------GTTGGATTCACACCTGTCAGTATAT----TTGTTGCA-------------------------------CTATATC-----------------------------------------------------------------------------TTGGTGTTGCTGTGGACTTTGGCTGGAGAGCGGGAGSizeHit CountTotal NormTotal
No Reads
droBia1
CCGACCCCATAAAGTA-TG------TATATTCTTGATCAGGTG------------------------------------------------------------GCGCCCTAA----------------------------------------AATATAGTTTTGGT---GCT------------------------------------------------------------------------------------------------CG---------------------------------------------------------------AGTATCTTCACTTCCCTTT-------------------TGCTCCCT---------------------------------TAAGCTGAGTAACGGGTATCTGATAGTCCAGG----C-ACTCGGCTATCGCG-TTCC------------TCCTTGG-----------GAAAGT-----TGAAA-A-------------------------------------------------------CCT------------------------------GCATACACTGAGTTTTTAAAAACACACGCAGTTTTCCCTG-----AAAAGCAATG-TTAGGTTTTACAGAA------GC---------CGGCTSizeHit CountTotal NormTotal
No Reads
droTak1
CCGACCCCATAAAGTTATA------CCT-----------------------------------------------------------------------ATCGAAATGTAGAAGACATTTTTCAAATCGAACCA-T--------------------TCATT-------------------------------------A-------AAAAGTTAT----ACGCAAT----CAAG-----------------------------AAAATTG---------------------------------------------------------------TATATATCCATCTCCTTCG-------------------CACTCCTT---------------------------------TTAGCCGAGTGACGGGTATTGGATAGTCGGGACTCCA-ACCCGACTATAGCG-TTCT------------CTCTTGT-----------TTTTA------GTTATAT------------------------------------------------TTGACT--GT-GCGCAAGCTTTTTATTATGGGT------------------------------------------------------------------------------------------------AGCGSizeHit CountTotal NormTotal
No Reads
droEle1
TCGACCCTATAAGGTA-TA------TGTGTTCAAGATCTCGGAAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------CTATGCAA-------G---CAAA-----------------------------AGAGTTGCACATTCAAGTTCTACTAATTCCAGTTTACTTCAAATATTGGAGTACACCAATAAATGTAATG------------CGCACAGGGCGTGGCTACCACTGGTAAAAAATTT---------------------ACATT-------GAAACAGGCTAATGGGTATCTGATAGTCGAGG----C-ACTCAACTATATCA-TTTA------------TTCTTGT-----------TTATTA-----TGTAGCT-------------------------------------------------------------------------------------GTTGCATATGATTGGCTTTTTG-----------TGTTTCTCTGCGTTTGCATGTTG-----------------------------------CATTTSizeHit CountTotal NormTotal
No Reads
droRho1
CCGACCCTATAAAGTA-TA------TATATTCTTGTTCAGGATCACTAGCCGA---GTCGATCTAGCCATGTC------------------------------------------------------------CGTGA---------------TCA-------------------------------------AAG------------------------------------------------------------------------TT---------------------------------------------------------------TCTATCTCCATCTCCCTCG-------------------CACTCCCT---------------------------------TTACCTGAGTAACGGGTATCTGATAGTCGGGG----C-ACCCGACTATAGCG-TTCT------------CTCTTGT-----------TTTGT------TT------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droFic1
GCGACCCCAGAAAGTA-TAT-AGTATATATTCCTGATCCGGATCATCAGACGA---GTCGACTTATAAGTATA------------------------------------------------------------AGTTG------------------AC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ACACCTTTTGGCAACGTTTAACTAAGTAACCAGTATCTAATAGTCGAAG----C-TCTCGACTGTTGCT-TTTC------T-----TTATTGT-----------TTTAA------TTAGCAA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTTSizeHit CountTotal NormTotal
No Reads
droKik1
CCGACCCTATAAAGTA-TA------TATATTCTTGATCAGCATCAACAGGGGA---ATCTTTCTAGATATGTC------------------------------------------------------------TGGAA----------------G--------------------------------------AAATCGA---------------------------------------------------------------------T---------------------------------------------------------------TTTTTG--------------------------------------------------------------------------------------------------------------------------GC-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CATTTT-----------------------------------TGCATTAAAATTAGCSizeHit CountTotal NormTotal
No Reads
droAna3
TTGACCATATAAGGTT-ATTTAAGGTA-------------------TAGTCGA------GATAGAGCCATGTC------------------------------------------------------------CTTTC------------------ATGTT-------------------------------------A-------AGAAAGTGC----GTTCA------------------------------------------------------------------------------------------------------------------------------------------------------GTGGA---------------------------------TGAGAAGAGTACCGGGTATCAAATAGTCGAAC----A-ATGCAACTACAGCC-TTCC------TT----ACTTTAC-----------TTTAT-------T---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
No Reads
droBip1
--GACCCCATAAAGTA-TAT--GTATATATTCTTGATCAGCATCAACTGCCGA---GTCGATATAGCCATGCC------------------------------------------------------------ATATATCATGGAGATTCCTATA--------------------------------------ATGCTG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAA------------TGATGGGA----A-ACTCGTTTATAGCG-TCCT------------TTCTTGT-----------T------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
dp5
CCGACCCCATAAAGTA-TA------TATATTCTTGATCAGCATCAATAGCCGA---GACGATATAGCCATGTC------------------------------------------------------------TTTCT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTTTCTCTCTTCTTTTC-TTTGAAAAAGTAT------------------------------------------------TTGAGAACCTCCTAT-------TTATTTTTTC---------------------------------------------------------------------------------------------------ACSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
................................TTGATCAGCATCAATAGCCGA---GA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2378.8662052100000000
.................................................................GCCATGTC------------------------------------------------------------TTTCT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGTTTCTCTC...........................................................................................................................................................................................................2311.0010000000010
................................TTGATCAGCATCAATAGCCGA---GAC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2461.0060240000000
................................TTGATCAGCATCAATAGCCGA---GACG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2560.6740400000000
................................TTGATCAGCATCAATAGCCGA---GACGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2660.6740100000030
.........................................ATCAATAGCCGA---GACGATATAGCCAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2620.5010000001000
................................TTGATCAGCATCAATAGCCGA---GACGAT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2750.4020100001000
............................ATTCTTGATCAGCATCAATAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.3570700000000
.............................TTCTTGATCAGCATCAATAGCCGA---GA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2660.3320200000000
.................................TGATCAGCATCAATAGCCGA---GA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2280.2520200000000
.................................TGATCAGCATCAATAGCCGA---GACGA.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2560.1710100000000
.................................TGATCAGCATCAATAGCCGA---GACG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2460.1710100000000
..............................TCTTGATCAGCATCAATAGCCGA---GA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2570.1410100000000
...........................TATTCTTGATCAGCATCAATAGCCGA---..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.0510000001000
...............................CTTGATCAGCATCAATAGCC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.0510001000000
droPer2
CCGACCCCATTAAGTA-AA------TATATTCCTTATCAGCATCATTAGCCGA---GTCGATATAGACAGGC-----------------------------------------------------------------A------------------GACTGTCCGTCT------GACTTTTTTGACG---------CCTAGTACTCATTA----------------TTA-----------------------------------------------------------------------------------------------TA-------------------ACCAGAA-------------------GGGGCAAATTGACCTTTCATGGGCATACTCTTTCCCAAATACTGACTGAGTATCGGGGATGTG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droWil2
CCGACCCCACAAAGTA-TA------TATATTCTTGATCAGGATCAACAACCGA---GTCGATCTAGCCATGTC------------------------------------------------------------CAGTCGGAAAGAAAT-------------------------------------------------------------------------------TT-----------------------------------------------------------------------------------------------CA-------------------ACGCTTG-------------------ACTCTCCT---------------------------------TT-GGTTAGTGAAGTGA-------AATAGAGG----T-GTTCGGTTACTCCA-CTCT------------GTCCCTT---------------------------------------------------------------ACTTCGTTATGAATTTT-------------------------------------------------------------------------------------------------------------------------------GCTSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
...........................................................................................................................................................................................................................................................................................................................................................................................................................................GA-------AATAGAGG----T-GTTCGGTTACTCCA-C........................................................................................................................................................................................................................................2676.0042090330
..........................................................................................................................................................................................................................................................................................................................................................................................................................................TGA-------AATAGAGG----T-GTTCGGTTACTCCA-C........................................................................................................................................................................................................................................2773.0021000210
..........................................................................................................................................................................................................................................................................................................................................................................................................................................TGA-------AATAGAGG----T-GTTCGGTTACTCCA-.........................................................................................................................................................................................................................................2671.29902070
......................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGAGG----T-GTTCGGTTACTCCA-CT.......................................................................................................................................................................................................................................2370.86601050
...........................................................................................................................................................................................................................................................................................................................................................................................................................................GA-------AATAGAGG----T-GTTCGGTTACTCCA-CTC......................................................................................................................................................................................................................................2870.86600060
............................................................................................................................................................................................................................................................................................................................................................................................................................................A-------AATAGAGG----T-GTTCGGTTACTCCA-C........................................................................................................................................................................................................................................2570.71501040
...........................................................................................................................................................................................................................................................................................................................................................................................................................................GA-------AATAGAGG----T-GTTCGGTTACTCCA-.........................................................................................................................................................................................................................................2570.71502030
......................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGAGG----T-GTTCGGTTACTCCA-CTCT------------G........................................................................................................................................................................................................................2650.60303000
............................................................................................................................................................................................................................................................................................................................................................................................................................................A-------AATAGAGG----T-GTTCGGTTACTCCA-CTC......................................................................................................................................................................................................................................2770.57401030
..........................................................................................................................................................................................................................................................................................................................................................................................................................................TGA-------AATAGAGG----T-GTTCGGTTACTCC...........................................................................................................................................................................................................................................2570.57401030
...........................................................................................................................................................................................................................................................................................................................................................................................................................................GA-------AATAGAGG----T-GTTCGGTTACT.............................................................................................................................................................................................................................................2270.43301020
......................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGAGG----T-GTTCGGTTACTCCA-CTCT------------.........................................................................................................................................................................................................................2570.43300030
......................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGAGG----T-GTTCGGTTACTCCA-CTCT------------GT.......................................................................................................................................................................................................................2750.40202000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................GA-------AATAGAGG----T-GTTCGGTTACTCCA-CT.......................................................................................................................................................................................................................................2770.29200020
....................................................................................................................................................................................................................................................................................................................................................................................................................................................AATAGAGG----T-GTTCGGTTACTCCA-CTC......................................................................................................................................................................................................................................2670.29201010
....................................................................................................................................................................................................................................................................................................................................................................................................................................................AATAGAGG----T-GTTCGGTTACTCCA-C........................................................................................................................................................................................................................................2470.29200020
....................................TCAGGATCAACAACCGA---GTCGATCT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.20400040
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAGG----T-GTTCGGTTACTCCA-CTCT------------.........................................................................................................................................................................................................................2470.14101000
............................................................................................................................................................................................................................................................................................................................................................................................................................................A-------AATAGAGG----T-GTTCGGTTACTCCA-.........................................................................................................................................................................................................................................2470.14100010
......................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGAGG----T-GTTCGGTTACTCCA-CTC......................................................................................................................................................................................................................................2470.14100010
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAGAGG----T-GTTCGGTTACTCC...........................................................................................................................................................................................................................................2170.14100010
..........................................................................................................................................................................................................................................................................................................................................................................................................................................TGA-------AATAGAGG----T-GTTCGGTTACTCCA-CT.......................................................................................................................................................................................................................................2870.14100010
............................................................................................................................................................................................................................................................................................................................................................................................................................................A-------AATAGAGG----T-GTTCGGTTACTCC...........................................................................................................................................................................................................................................2370.14101000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................GA-------AATAGAGG----T-GTTCGGTTACTCCA-AAA......................................................................................................................................................................................................................................28100.10100010
...........................................................................................................................................................................................................................................................................................................................................................................................................................................GA-------AATAGAGG----T-GTTCGGTTACTCCA-CA.......................................................................................................................................................................................................................................27100.10100010
...........................................................................................................................................................................................................................................................................................................................................................................................................................................GA-------AATAGAGG----T-GTTCGGTTACTCCA-TA.......................................................................................................................................................................................................................................27100.10100010
..............................................CAACCGA---GTCGATCTAGCCATG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................22200.10202000
...............................................AACCGA---GTCGATCTAGCCATGTC------------------------------------------------------------C....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................24200.05100010
....................................TCAGGATCAACAACCGA---GTCGATCTAG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27200.05101000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-GTTCGGTTACTCCA-CTCT------------G........................................................................................................................................................................................................................20200.05100010
...............................CTTGATCAGGATCAACAACCG......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.05100010
................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-GTTCGGTTACTCCA-CTCT------------.........................................................................................................................................................................................................................19200.05100010
droVir3
CCGACCCCGTAAAGTA-----------TATTTTTGATCGACGCGATGAGCTGATGAGATGGTTTATCTAGCTA-------------------------------AGGCCTAG-------------------TCCTTTG------------------GCATT-------------------------------------T-------AGACTG---------------TCA-TA-TTCAGACCCTGTC-CATTTCATAAAGTTTGGAA----------------------------------------------------------------------------------TCG-------------------CTTCC------------------------------------------AA-ATCAGGGTACCTCCTAGTCGGGC----ATTTCCGATTAGAACACTTGC------TA----TTTTTGT-----------TTAAT-------TTGTATT------CCGCATTTCAGATA----TTGCACCTTTCAACGTAATGAG-----------------------------------------------------------------------------------------------------------CCGTGCAGCCTACCGGCAATTGTGGAASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.................................TGATCGACGCGATGAGCTGAT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2113.003000000000000000100000000000100010000000000000000000000000000000
........................................CGCGATGAGCTGATGAGATGG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2113.003000000000010000000000000000000100000000000000000000000000000010
...........................................GATGAGCTGATGAGATGGTTT..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2113.003000000003000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................GAA----------------------------------------------------------------------------------TCG-------------------CTTCC------------------------------------------AA-ATCAGGGT.............................................................................................................................................................................................................................................................................2113.003000000000000001000000000000011000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACCTTTCAACGTAATGAG-----------------------------------------------------------------------------------------------------------C..........................2112.002000000000000000000000000000011000000000000000000000000000000000
.................................................CTGATGAGATGGTTTATCTAG....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.002000000000000000000000000000002000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTCAGATA----TTGCACCTTTC.................................................................................................................................................2112.002000000000000000000000000000002000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGATA----TTGCACCTTTCAACG.............................................................................................................................................2112.002001000000000000000000000000010000000000000000000000000000000000
............AGTA-----------TATTTTTGATCGACGCG..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2112.002000000000000000000000000000001000000000000000000000000000000010
...............................TTTGATCGACGCGATGAGCT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2012.002000000000000001000000000000000000000000000000000000000000000010
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCGTGCAGCCTACCGGCAATTG.....2211.001001000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TT------CCGCATTTCAGATA----TTGCA.......................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
..............................................................................................................AG-------------------TCCTTTG------------------GCATT-------------------------------------T-------AGACTG---------------.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000010000000000000000000000000000000
.............................TTTTTGATCGACGCGATGAGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
.......................................ACGCGATGAGCTGATGAGAT...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000001000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................GTACCTCCTAGTCGGGC----ATT.......................................................................................................................................................................................................................................................2011.001000000000000000000000000000001000000000000000000000000000000000
................................................................................................................................................................................................................ACTG---------------TCA-TA-TTCAGACCCTGT....................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000001000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAG-----------------------------------------------------------------------------------------------------------CCGTGCAGCCTACCGGCA.........2211.001000000000000000000100000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCAACGTAATGAG-----------------------------------------------------------------------------------------------------------CCGTG......................2011.001000000000000000000000000000100000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................C----ATTTCCGATTAGAACACTTG......................................................................................................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTTCAACGTAATGAG-----------------------------------------------------------------------------------------------------------CCGTGC.....................2111.001000000000000000000000000000000000000000100000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................T-----------TTAAT-------TTGTATT------CCGCATTTCAG...................................................................................................................................................................2411.001000000000000000000000000000100000000000000000000000000000000000
..............................................................................................................................................................ATT-------------------------------------T-------AGACTG---------------TCA-TA-TTCAGA..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000001000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTTTCAACGTAATGAG-----------------------------------------------------------------------------------------------------------CCGTGC.....................2311.001000000010000000000000000000000000000000000000000000000000000000
................................TTGATCGACGCGATGAGCTGA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000001000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCACCTTTCAACGTAATGAG-----------------------------------------------------------------------------------------------------------CCGTGC.....................2611.001000000000000000001000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................CTGTC-CATTTCATAAAGTTTG..................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000001000000000000000000000000000000000000
...........AAGTA-----------TATTTTTGATCGACGC...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000001000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAG-----------------------------------------------------------------------------------------------------------CCGTGCAGCCTACC.............1811.001000000001000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCTTTCAACGTAATGAG-----------------------------------------------------------------------------------------------------------CCG........................2111.001000000000000001000000000000000000000000000000000000000000000000
..............TA-----------TATTTTTGATCGACGCGAT............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001001000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAG-----------------------------------------------------------------------------------------------------------CCGTGCAGCCTACCGGCAA........2411.001000000000000000000000100000000000000000000000000000000000000000
..............................TTTTGATCGACGCGATGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000000000000000000000010000000000000000000000000000000
....................................................................................................................................................................................................................................CA-TA-TTCAGACCCTGTC-CATT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000010000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GT-----------TTAAT-------TTGTATT------CCGCATT.......................................................................................................................................................................2111.001000000000000000000000000000010000000000000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AACGTAATGAG-----------------------------------------------------------------------------------------------------------CCGTGCAGCCTACCGGC..........2811.001000000000000000000000000000000010000000000000000000000000000000
........................................................................................................................................................................................................................................A-TTCAGACCCTGTC-CATTTCA...........................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000001000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................AGGGTACCTCCTAGTCGGGC----..........................................................................................................................................................................................................................................................2011.001001000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGCACCTTTCAACGTAATGAG-----------------------------------------------------------------------------------------------------------...........................2111.001000000000000000000000000000000100000000000000000000000000000000
......................................................................................................................................................................................................T-------AGACTG---------------TCA-TA-TTCAGACCC.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001010000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................TTCAGACCCTGTC-CATTTCATA.........................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000000000000000000000000000000000000000000000000010
...................................................................................................................................................................................................................................................................................................................................................................................CTTCC------------------------------------------AA-ATCAGGGTACCTC........................................................................................................................................................................................................................................................................2011.001000000000000000000000000000001000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GATA----TTGCACCTTTCAACGT............................................................................................................................................2011.001000000000000000000000000000000000000000000000000000000000001000
...............................TTTGATCGACGCGATGAGCTGT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000100000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGTATT------CCGCATTTCAGAT.................................................................................................................................................................2011.001000000000000000001000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................GGTACCTCCTAGTCGGGC----ATTTC.....................................................................................................................................................................................................................................................2311.001000000000000000000000000001000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................CAGGGTACCTCCTAGTCGGGC----..........................................................................................................................................................................................................................................................2111.001010000000000000000000000000000000000000000000000000000000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................................................CCTCCTAGTCGGGC----ATTTCCG...................................................................................................................................................................................................................................................2111.001000000000000000001000000000000000000000000000000000000000000000
.............................................TGAGCTGATGAGATGGTTTAT........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000001000000000000000000000000000000000000
..............................TTTTGATCGACGCGATGAGCT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000000100000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAG-----------------------------------------------------------------------------------------------------------CCGTGCAGCCTACCGGCAA........2311.001000000000000000001000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATGAG-----------------------------------------------------------------------------------------------------------CCGTGCAGCCTACCG............2011.001001000000000000000000000000000000000000000000000000000000000000
......................................................................................................................................TTTG------------------GCATT-------------------------------------T-------AGACTG---------------TC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................1811.001010000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................................................................TAAAGTTTGGAA----------------------------------------------------------------------------------TCG-------------------CTTCC------------------------------------------A.......................................................................................................................................................................................................................................................................................2111.001000000000000000000000000000000010000000000000000000000000000000
...............................TTTGATCGACGCGATGAGCTGAGA...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2411.001000000000000000000000001000000000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTCAACGTAATGAG-----------------------------------------------------------------------------------------------------------CCGTGCAGCC.................2411.001000000000000000000000000000000000000000000000000000000000000010
.................................TGATCGACGCGATGAGCTGA.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2011.001000000000000000000000000000010000000000000000000000000000000000
............................ATTTTTGATCGACGCGATGAG.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2111.001000001000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................CAGGGTACCTCCTAGTCGGG...............................................................................................................................................................................................................................................................2020.501100000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................CTAGTCGGGC----ATTTCCGATT................................................................................................................................................................................................................................................2030.331010000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................CAGGGTACCTCCTAGTCGG................................................................................................................................................................................................................................................................1930.331000000100000000000000000000000000000000000000000000000000000000
droMoj3
CAGACCCCACAAAGTA-TA------TATATTCTTGATCAGGGCGACGAGCTGA---GTCGATTTGGCACTGTC------------------------------------------------------------CGTCT------------------GTCTGTCCGTCCG------TATGTATGAACG---------CGTCGATCTCAGAAGATATAAGA-------ATAT-CAG-----------------------------------------------------------------------------------------------------------------AAT-----------------------ATCAGA---------------------------------TTAGAGGA-TTCAGGGTATCTCCTAGTCGAGC----AGTCTCGACTAGAGTT-TTCT------------TACTTGT-----------TGTAA--------TATAT----------------------TTAATATA-------------------------------ATATGTT--------------------------------------------------------------------------------------------------------------TCASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
...ACCCCACAAAGTA-TA------TATATTCTTG.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................25201.75353500000
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCGACTAGAGTT-TTCT------------TACTTGT-----------TG.....................................................................................................................................................................................................2670.292200000
..........................................CGACGAGCTGA---GTCGATTTGG........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.204400000
......................................................................................................................................................................................................................................................................................................................................................................................TCAGA---------------------------------TTAGAGGA-TTCAGGG..............................................................................................................................................................................................................................................................................2060.171010000
.......................................................................................................................................................................CG------TATGTATGAACG---------CGTCGA................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.153300000
..................................................TGA---GTCGATTTGGCACTGTC------------------------------------------------------------C....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................2170.141100000
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGACTAGAGTT-TTCT------------TACTTGT-----------TG.....................................................................................................................................................................................................2580.131100000
..............................TCTTGATCAGGGCGACGAGCT.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.102000002
................................................GCTGA---GTCGATTTGGCACTGTC------------------------------------------------------------CGTCA------------------..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................27120.081100000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................AGC----AGTCTCGACTAGAGTT-TTCT------------T........................................................................................................................................................................................................................24200.051001000
....CCCCACAAAGTA-TA------TATATTC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.051100000
..................................GATCAGGGCGACGAGCTGA---GTCGATT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.051100000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................TCTCGACTAGAGTT-TTCT------------TACTTGT-----------T......................................................................................................................................................................................................26200.051100000
......................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGGGTATCTCCTAGTCGAGC----..........................................................................................................................................................................................................................................................22200.051010000
.............................................................................................................................................................TCTGTCCGTCCG------TATGTATG...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................20200.051100000
....................................................................................................................................................................................ATGAACG---------CGTCGATCTCAG..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................19200.051100000
..................A------TATATTCTTGATCAGGGCGACGAGC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................26200.051000001
droGri2
GCGTCCGCATAAAGTA-TG------TATATTTTTAATCAGGATCAAGAGCCGA---GTTGATGTAGCCATATC------------------------------------------------------------CGTCC------------------GTCTTTCGGTCAAGCTCAAGTTTATTTAATTTGAGAAATTTAGCA-------------------------ATA-----------------------------------------------------------------------------------------------TA-------------------ACTAGAA-------------------TAAATTTA---------------------------------ACAACTGGGTTCAGGGTATATCGTAGTCAAGC----TCACTCGACTACATCA-TTCTAACAAGTTTTTTTTCTTCT-----------TGTG-------------T----------------------TTGGTACC-------------------------------ATACGA---------------------------------------------------------------------------------------------------------------TTCSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/17/2015 at 10:34 PM