ID:

der_54

 Coordinate:

scaffold_4784:5982022-5982085 +

 Confidence:

Known Ortholog

 Class:

Canonical miRNA

 Genomic Locale:

5pUTR

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-27.9 -27.9 -27.3

Flybase annnotation

utr5 [utr5_plus_6624]

No Repeatable elements found

Sense Strand Reads

ATAATTGGGTAAAATAAGAAGGAATACACTTTTGTCCAGCTAATCAACTCCATCGTGCAGAGGTTTGAGTGTCTTGTGTGTTGCCTAATCGCATTCAATTTCTGAACGGTAGAGATGGTACGCTTAGAAACAACCTAAAGCAAGTATTAATTATGGTCAAATAA

***********************************..(((..((((.(((.(((((.((((((((.((((((.(((.((...)).)))..)))))))))))))).))))).))).))))..)))....************************************ 		Read size # Mismatch Hit Count Total Norm Total V108

head

 V040

embryo

 V107

male body		 M057

embryo

 M055

female body

 V060

head

 GSM1528801

follicle cells
..................................................CATCGTGCAGAGGTTTGAGTGT............................................................................................ 22 0 1 532.00 532 214 57 185 12 40 18 6
..................................................CATCGTGCAGAGGTTTGAGTGTC........................................................................................... 23 0 1 411.00 411 31 228 39 100 12 1 0
..................................................CATCGTGCAGAGGTTTGAGTG............................................................................................. 21 0 1 293.00 293 151 41 73 2 17 9 0
..................................................CATCGTGCAGAGGTTTGAGTGTCT.......................................................................................... 24 0 1 39.00 39 20 6 8 3 1 1 0
..................................................CATCGTGCAGAGGTTTGAGT.............................................................................................. 20 0 1 35.00 35 13 2 15 0 4 1 0
...........................................................................................CATTCAATTTCTGAACGGTAGA................................................... 22 0 1 14.00 14 0 2 3 5 4 0 0
...................................................ATCGTGCAGAGGTTTGAGTGT............................................................................................ 21 0 1 13.00 13 3 0 7 1 2 0 0
...................................................ATCGTGCAGAGGTTTGAGTGTC........................................................................................... 22 0 1 10.00 10 1 0 6 2 1 0 0
..................................................CGTCGTGCAGAGGTTTGAGTGTC........................................................................................... 23 1 1 10.00 10 0 1 0 9 0 0 0
..................................................CATCGTGCAGAGGTTTTAGTGTC........................................................................................... 23 1 1 9.00 9 0 9 0 0 0 0 0
...................................................ATCGTGCAGAGGTTTGAGTGTCT.......................................................................................... 23 0 1 9.00 9 3 2 0 4 0 0 0
..................................................CATCGTGCAGAGGTTTGAG............................................................................................... 19 0 1 8.00 8 2 0 5 1 0 0 0
..................................................CATCGTGCAGCGGTTTGAGTGTC........................................................................................... 23 1 1 6.00 6 1 3 1 1 0 0 0
..................................................CATCGTGCACAGGTTTGAGTGTT........................................................................................... 23 2 1 6.00 6 0 5 0 1 0 0 0
..................................................CACCGTGCAGAGGTTTGAGTGTC........................................................................................... 23 1 1 5.00 5 0 0 0 5 0 0 0
..................................................CATCGTGCAGAGGTTTGAGTGTT........................................................................................... 23 1 1 5.00 5 1 1 2 0 1 0 0
..................................................CATCGTGCAGATGTTTGAGTGT............................................................................................ 22 1 1 4.00 4 4 0 0 0 0 0 0
..................................................CATCGTGCATAGGTTTGAGTGTC........................................................................................... 23 1 1 4.00 4 0 4 0 0 0 0 0
..................................................CATCGTGCAGAGGTTTGAGTGA............................................................................................ 22 1 1 4.00 4 2 0 2 0 0 0 0
..................................................AATCGTGCAGAGGTTTGAGTGT............................................................................................ 22 1 1 4.00 4 4 0 0 0 0 0 0
..................................................CATCGTGCAGAGGTTTGATTGT............................................................................................ 22 1 1 4.00 4 2 1 1 0 0 0 0
..................................................CATCGGGCAGAGGTTTGAGTGTC........................................................................................... 23 1 1 4.00 4 0 2 0 2 0 0 0
..................................................CGTCGTGCAGAGGTTTGAGTGT............................................................................................ 22 1 1 3.00 3 0 1 1 1 0 0 0
..................................................CATCGTGCAGAGGTTTGAGGGT............................................................................................ 22 1 1 3.00 3 1 1 0 0 1 0 0
..................................................CATCGTTCAGAGGTTTGAGTGT............................................................................................ 22 1 1 3.00 3 3 0 0 0 0 0 0
..................................................CATCTTGCAGAGGTTTGAGTGT............................................................................................ 22 1 1 3.00 3 1 0 2 0 0 0 0
..................................................CATCGTGCAGAGGTTTGCGTGT............................................................................................ 22 1 1 3.00 3 0 0 0 0 0 0 3
..................................................CATTGTGCAGAGGTTTGAGTGTC........................................................................................... 23 1 1 3.00 3 0 0 0 3 0 0 0
..................................................CATAGTGCAGAGGTTTGAGTG............................................................................................. 21 1 1 2.00 2 2 0 0 0 0 0 0
..................................................CATCGTGCAGAGGGTTGAGTGTC........................................................................................... 23 1 1 2.00 2 0 1 0 1 0 0 0
..................................................CATCGTGCAGAGGTTTGAGTGTG........................................................................................... 23 1 1 2.00 2 1 1 0 0 0 0 0
..................................................CATCGTGCAGAGTTTTGAGTGT............................................................................................ 22 1 1 2.00 2 2 0 0 0 0 0 0
..................................................CATCGTGCAGAGGTTTGATTGTC........................................................................................... 23 1 1 2.00 2 0 2 0 0 0 0 0
..................................................CATCGTGCAGAGGTTTGAGTTT............................................................................................ 22 1 1 2.00 2 1 1 0 0 0 0 0
..................................................AATCGTGCAGAGGTTTGAGTG............................................................................................. 21 1 1 2.00 2 2 0 0 0 0 0 0
..................................................CATCGTGCAGAGGTTTGCGTGTC........................................................................................... 23 1 1 2.00 2 0 2 0 0 0 0 0
..................................................TATCGTGCAGAGGTTTGAGTGT............................................................................................ 22 1 1 2.00 2 1 0 1 0 0 0 0
..................................................CATCGTGCAGAGGTTTGAGTGC............................................................................................ 22 1 1 2.00 2 0 0 0 2 0 0 0
..................................................CATCGTGAAGAGGTTTGAGTGT............................................................................................ 22 1 1 2.00 2 2 0 0 0 0 0 0
..................................................CATCATGCAGAGGTTTGAGTGTC........................................................................................... 23 1 1 2.00 2 0 2 0 0 0 0 0
..................................................CATCGTGCAGAGGCTTGAGTGT............................................................................................ 22 1 1 2.00 2 0 1 1 0 0 0 0
..................................................CATCGTGCAGAGGTTTGAGTGTCA.......................................................................................... 24 1 1 2.00 2 1 1 0 0 0 0 0
....................................................TCGTGCAGAGGTTTGAGTGTCT.......................................................................................... 22 0 1 2.00 2 0 0 0 0 2 0 0
..................................................CATCGTGCATAGGTTTGAGTG............................................................................................. 21 1 1 2.00 2 1 0 1 0 0 0 0
..................................................CATCGTTCAGAGGTTTGAGTG............................................................................................. 21 1 1 2.00 2 2 0 0 0 0 0 0
..................................................CATCGTGCAGAGGTTTGAGTT............................................................................................. 21 1 1 2.00 2 1 0 0 0 1 0 0
..................................................CATCGTGCAGAGGTTTGATTG............................................................................................. 21 1 1 2.00 2 1 1 0 0 0 0 0
..................................................CATCGTGCAGAGGTTTGCGTG............................................................................................. 21 1 1 2.00 2 0 0 0 0 2 0 0
..................................................CATCGTGCAGAGGTTTAAGTGTC........................................................................................... 23 1 1 2.00 2 0 2 0 0 0 0 0
..................................................AATCGTGCAGAGGTTTGAGTGTC........................................................................................... 23 1 1 2.00 2 2 0 0 0 0 0 0
..................................................CATCGTGCGGAGGTTTGAGTGTC........................................................................................... 23 1 1 2.00 2 0 1 1 0 0 0 0
..................................................CATCGTGCAGAGGTTTTAGTTTC........................................................................................... 23 2 1 2.00 2 0 2 0 0 0 0 0
..................................................CATCGCGCAGAGGTTTGAGTGTC........................................................................................... 23 1 1 2.00 2 0 1 0 0 1 0 0
..................................................CATCTTGCAGAGGTTTGAGTG............................................................................................. 21 1 1 2.00 2 1 1 0 0 0 0 0
..................................................CATCGTGCAGAGGTTTTAGTGT............................................................................................ 22 1 1 2.00 2 0 1 0 0 0 1 0
..................................................CATCGTGCAGACGTTTGAGTGTC........................................................................................... 23 1 1 2.00 2 0 2 0 0 0 0 0
..................................................CATAGTGCAGAGGTTTGAGTGT............................................................................................ 22 1 1 2.00 2 1 0 0 0 1 0 0
..................................................CATCGTGCAGAGGTTTGAGTTTC........................................................................................... 23 1 1 2.00 2 0 1 0 0 1 0 0
........................................................................................................AACGGTTGAGTTGGAACGC......................................... 19 3 6 1.33 8 0 0 3 0 5 0 0
..................................................CATCGTGCAGAGGTTTGAGTGGC........................................................................................... 23 1 1 1.00 1 0 1 0 0 0 0 0
..................................................CATCGGGCAGAGGTTTGAGTG............................................................................................. 21 1 1 1.00 1 0 1 0 0 0 0 0
...........................................................................................CATTCAATTTCTGAACGGTAGT................................................... 22 1 1 1.00 1 0 0 1 0 0 0 0
...........................................................................................CACTCAATTTCTGAACGGTAGA................................................... 22 1 1 1.00 1 0 0 0 1 0 0 0
..................................................CATCGTGCAGAGGTTTGACTGTC........................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0 0
..................................................CATCGTACAGAGGTTTGAGTGG............................................................................................ 22 2 1 1.00 1 0 0 0 0 0 1 0
..................................................CATCGTGCAGAGGTTTGAGGGTC........................................................................................... 23 1 1 1.00 1 0 0 0 1 0 0 0
..................................................CATCGTGCAGAGGTTTGAGATCC........................................................................................... 23 3 1 1.00 1 0 1 0 0 0 0 0
..................................................CATCGTGTAGAGGTTTGAGTGT............................................................................................ 22 1 1 1.00 1 0 0 0 0 0 0 1
..................................................CATCGTGCACAGGTTTGAGTGT............................................................................................ 22 1 1 1.00 1 1 0 0 0 0 0 0
..................................................CATCGTGCAGCGGTTTGAGTGT............................................................................................ 22 1 1 1.00 1 1 0 0 0 0 0 0
..................................................TATAGTGCAGAGGGTTGAGTGT............................................................................................ 22 3 1 1.00 1 0 0 0 0 1 0 0
..................................................CATCGTGCAGATGTTTGAGTG............................................................................................. 21 1 1 1.00 1 1 0 0 0 0 0 0
..................................................CATCGTGCAGAGGTTTGAGTC............................................................................................. 21 1 1 1.00 1 0 0 0 0 1 0 0
..................................................CATCGGGCAGAGGTTTTAGTGTC........................................................................................... 23 2 1 1.00 1 0 1 0 0 0 0 0
..................................................CATCGTGCAGAGGTTTAATTTTC........................................................................................... 23 3 1 1.00 1 0 1 0 0 0 0 0
..................................................CATCGTGCATAGGTTTGAGT.............................................................................................. 20 1 1 1.00 1 1 0 0 0 0 0 0
..................................................CATCGTGCACAGGTTTGAGTG............................................................................................. 21 1 1 1.00 1 1 0 0 0 0 0 0
..................................................CAGCGGGCAGAGGTTTGAGTGTG........................................................................................... 23 3 1 1.00 1 0 1 0 0 0 0 0
..................................................CATCGTGCAGAGGTCTGAGTGT............................................................................................ 22 1 1 1.00 1 0 1 0 0 0 0 0
..................................................CATCGTGCAGAGGTTCGAGTGT............................................................................................ 22 1 1 1.00 1 1 0 0 0 0 0 0
..................................................CATCGTGCAGAGTTTTGAGTG............................................................................................. 21 1 1 1.00 1 1 0 0 0 0 0 0
..................................................CATCGTGCAGATGTTTGAGT.............................................................................................. 20 1 1 1.00 1 1 0 0 0 0 0 0
................................TTTCCAGCTAATCAACTCC................................................................................................................. 19 1 1 1.00 1 0 0 0 1 0 0 0
..................................................CATCGTGCAGAGGTTTGAGTGTCTG......................................................................................... 25 1 1 1.00 1 0 1 0 0 0 0 0
..................................................AATCGTGCAGAGGTTTGTGTGGC........................................................................................... 23 3 1 1.00 1 0 1 0 0 0 0 0
..................................................CATCGTGCAGAGTTTTTATTGTC........................................................................................... 23 3 1 1.00 1 0 1 0 0 0 0 0
..................................................GATCGTGCAGAGGTTCGAGTGTCA.......................................................................................... 24 3 1 1.00 1 0 0 0 1 0 0 0
..................................................CATCGTGCAGAGGTTGGAGTGTC........................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0 0
..................................................CATAGTGCAGAGGTTTGAGT.............................................................................................. 20 1 1 1.00 1 1 0 0 0 0 0 0
..................................................CATACTGCAGAGGTTTGAGTGTC........................................................................................... 23 2 1 1.00 1 0 0 0 0 1 0 0
..................................................CATCGTGCCGCGGTTTGAGGGT............................................................................................ 22 3 1 1.00 1 0 0 0 0 1 0 0
..................................................CATCGCGCAGAGGTTTGAGTGT............................................................................................ 22 1 1 1.00 1 1 0 0 0 0 0 0
..................................................CATCGTGCAGAGATTTGAGTGTC........................................................................................... 23 1 1 1.00 1 0 1 0 0 0 0 0
..................................................CATCGTGCATAGGTTTGAGAGTC........................................................................................... 23 2 1 1.00 1 0 1 0 0 0 0 0
..................................................CATAGTGCAGAGGTTTGAGTGTC........................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0 0
..................................................CACCGTGCAGAGGTTTGAGTGT............................................................................................ 22 1 1 1.00 1 1 0 0 0 0 0 0
..................................................CATCGTGCAGAGGTTTGAGTGTCTAA........................................................................................ 26 2 1 1.00 1 1 0 0 0 0 0 0
.............................................................................................TTCAATTTCTGAACGGTAGAGTT................................................ 23 1 1 1.00 1 1 0 0 0 0 0 0
..................................................CATCGTGCAGAGGTTTTAGTG............................................................................................. 21 1 1 1.00 1 1 0 0 0 0 0 0
..................................................CATCGTGCAGAGGTTTGGGTG............................................................................................. 21 1 1 1.00 1 1 0 0 0 0 0 0
..................................................CATCGTGCTGAGGTTTGAGGGT............................................................................................ 22 2 1 1.00 1 0 1 0 0 0 0 0
..................................................CATCGTTCAGAGTTTTGAGTGTC........................................................................................... 23 2 1 1.00 1 0 1 0 0 0 0 0
..................................................CATCGTGCAGAGGCTTTAGTG............................................................................................. 21 2 1 1.00 1 0 1 0 0 0 0 0
..................................................CATCGTGCAGCGGTTTGAGTG............................................................................................. 21 1 1 1.00 1 1 0 0 0 0 0 0
..................................................CGTCGTGCAGGGGTTTGAGTGTC........................................................................................... 23 2 1 1.00 1 0 0 0 0 0 1 0
..................................................CATCGTGCAGAGGTTTTATTTTC........................................................................................... 23 3 1 1.00 1 0 1 0 0 0 0 0
..................................................CATCGTGAAGAGGTTTGAGTG............................................................................................. 21 1 1 1.00 1 1 0 0 0 0 0 0
..................................................CATCGTGCAGAGGTTTGAGAGTC........................................................................................... 23 1 1 1.00 1 0 1 0 0 0 0 0
..................................................CATCGTGCAGAGGTTTGAGTA............................................................................................. 21 1 1 1.00 1 0 0 1 0 0 0 0
..................................................CCTCGTGCCGAGGTTTGAGTGTC........................................................................................... 23 2 1 1.00 1 0 1 0 0 0 0 0
..................................................CAACGTGCATAGGTTTGAGTGTC........................................................................................... 23 2 1 1.00 1 0 1 0 0 0 0 0
..................................................CATTGTGCAGAGGTTTGATTGTC........................................................................................... 23 2 1 1.00 1 0 0 0 1 0 0 0
...........................................................................................CATTCAATTTCTGAACGGTAGAA.................................................. 23 1 1 1.00 1 0 0 0 0 1 0 0
..................................................CATCGTGCATAGGTTTGAGTGT............................................................................................ 22 1 1 1.00 1 0 0 1 0 0 0 0
..................................................CATCGTGCAGAGGCTTGAGCGTC........................................................................................... 23 2 1 1.00 1 0 1 0 0 0 0 0
..................................................CATCGTACAGAGGTTTGAGCGTC........................................................................................... 23 2 1 1.00 1 0 1 0 0 0 0 0
..................................................CATCGCGCACAGGTTTCAGTGTC........................................................................................... 23 3 1 1.00 1 0 1 0 0 0 0 0
..................................................CATCGTGCAGAGGTTTGAGTGTA........................................................................................... 23 1 1 1.00 1 0 0 0 0 1 0 0
...................................................ATCGTGCACAGGTTTGAGTGTT........................................................................................... 22 2 1 1.00 1 0 1 0 0 0 0 0
..................................................CATCTTGCAGGGGTTTGAGTGTC........................................................................................... 23 2 1 1.00 1 0 0 0 1 0 0 0
..................................................TATCGTGCAGAGGTTTGAGTGC............................................................................................ 22 2 1 1.00 1 0 0 0 1 0 0 0
...................................................ATCGTGCAGAGGTTTGAGTGTCTT......................................................................................... 24 0 1 1.00 1 1 0 0 0 0 0 0
..................................................CATCTTGCAGAGGTTTGAGTGTC........................................................................................... 23 1 1 1.00 1 0 0 0 1 0 0 0
..................................................CATCGTGCAGAGGTTTCAGTGTC........................................................................................... 23 1 1 1.00 1 0 1 0 0 0 0 0
..................................................CATCGAGCAGAGGTTTGAGTGT............................................................................................ 22 1 1 1.00 1 0 0 1 0 0 0 0
..................................................CATCGTGCGGAGGTTTGAGTGT............................................................................................ 22 1 1 1.00 1 1 0 0 0 0 0 0
...................................................ATCGTGCAGAGGTTTGAGTG............................................................................................. 20 0 1 1.00 1 1 0 0 0 0 0 0
..................................................CATCGGGCAGAGGTTTGAGTGT............................................................................................ 22 1 1 1.00 1 0 0 1 0 0 0 0
..................................................CATAGTGCAGAGGTTTGAGTGTG........................................................................................... 23 2 1 1.00 1 1 0 0 0 0 0 0
..................................................CATCGTGCAGAGGTTTGAGCGT............................................................................................ 22 1 1 1.00 1 0 1 0 0 0 0 0
..................................................CATCGTGCAGCGGTTTGAGTGC............................................................................................ 22 2 1 1.00 1 0 0 0 0 0 1 0
..................................................CATCGTGCAGAGGTTTGAATGT............................................................................................ 22 1 1 1.00 1 0 0 1 0 0 0 0
.............................TTTTGTCCAGCTATTCAACTC.................................................................................................................. 21 1 1 1.00 1 0 1 0 0 0 0 0
..................................................CATCGTGCAGAGGTATGAGTGTC........................................................................................... 23 1 1 1.00 1 0 1 0 0 0 0 0
..................................................CATCGTGCACAGGATTGAGCGTC........................................................................................... 23 3 1 1.00 1 0 1 0 0 0 0 0
..................................................CATCGTTCAGAGGTTTGAGTGTCT.......................................................................................... 24 1 1 1.00 1 1 0 0 0 0 0 0
..................................................CATCGTGCAAAGGTTTGAGTGTC........................................................................................... 23 1 1 1.00 1 0 1 0 0 0 0 0
..................................................CATCGTTCAGAGGTTTGAGTGTC........................................................................................... 23 1 1 1.00 1 0 1 0 0 0 0 0
..................................................CATCGTTCAGAGGTTTGAGT.............................................................................................. 20 1 1 1.00 1 0 0 1 0 0 0 0
..................................................CATCGGGCAGACATTTGAGTGTC........................................................................................... 23 3 1 1.00 1 0 1 0 0 0 0 0
..................................................CATCGTGCAGAGGTTTGACTG............................................................................................. 21 1 1 1.00 1 0 1 0 0 0 0 0
..................................................CATCGTGCGGAGGTTTTAGTGTC........................................................................................... 23 2 1 1.00 1 0 1 0 0 0 0 0
..................................................CATCGTGCAGAGGTTTGAGTCTA........................................................................................... 23 2 1 1.00 1 0 1 0 0 0 0 0
..................................................CATCGTGCAGAGGTTGGTGTGTC........................................................................................... 23 2 1 1.00 1 0 1 0 0 0 0 0
..................................................CATCTTGCAGAGGTTTGAGTGA............................................................................................ 22 2 1 1.00 1 1 0 0 0 0 0 0
...................................................ATCGTGCAGAGGTTTGAGT.............................................................................................. 19 0 1 1.00 1 0 1 0 0 0 0 0
..................................................CATCATGCAGAGGTTTGAGTGT............................................................................................ 22 1 1 1.00 1 0 0 1 0 0 0 0
..................................................CATCGTGCAGACGTTTGAGTGT............................................................................................ 22 1 1 1.00 1 0 0 0 1 0 0 0
..................................................CCTCGTGCAGCGGTTTGAGTGT............................................................................................ 22 2 1 1.00 1 1 0 0 0 0 0 0
................................TGCCCAGCTAATCAACTC.................................................................................................................. 18 1 1 1.00 1 0 0 0 1 0 0 0
..................................................CATCGTGCAGCGGTTTTAGTGTC........................................................................................... 23 2 1 1.00 1 0 1 0 0 0 0 0
..................................................CATCGTGCAGAGGTTTGAGTGG............................................................................................ 22 1 1 1.00 1 0 1 0 0 0 0 0
................................TGTCCAGCTAATCAACTCC................................................................................................................. 19 0 1 1.00 1 0 0 0 1 0 0 0
..................................................CATCGTGCAGACGTTTTAGTTTCT.......................................................................................... 24 3 1 1.00 1 0 1 0 0 0 0 0
..................................................CATCGTGCAGAGGTTTGAGTGTAT.......................................................................................... 24 1 1 1.00 1 1 0 0 0 0 0 0
..................................................CAGCGTGCAGAGGTTTGAGTGTC........................................................................................... 23 1 1 1.00 1 0 1 0 0 0 0 0
..................................................CATCGTGCACAGGCTTGAGTGTT........................................................................................... 23 3 1 1.00 1 0 1 0 0 0 0 0
..................................................CATCGTGCAGAGGTTTGAATGTC........................................................................................... 23 1 1 1.00 1 0 0 1 0 0 0 0
..................................................CATCGTGCAGAGGCTTGAGTGTT........................................................................................... 23 2 1 1.00 1 0 1 0 0 0 0 0
..................................................CATCGGGCAGAGGCTTGAGTGTC........................................................................................... 23 2 1 1.00 1 0 1 0 0 0 0 0
..................................................CATCGTGCATAGGTTTGAGCGCC........................................................................................... 23 3 1 1.00 1 0 1 0 0 0 0 0
..................................................CATCGTGCCGAGGTTTGAGTGT............................................................................................ 22 1 1 1.00 1 0 1 0 0 0 0 0
..................................................CATCTTGCAGATGTTTGAGTG............................................................................................. 21 2 1 1.00 1 1 0 0 0 0 0 0
..................................................CATCGTGCAGAGGATTGAGTGT............................................................................................ 22 1 1 1.00 1 0 1 0 0 0 0 0
..................................................CATCGTGCAGGGGTTTGAGTG............................................................................................. 21 1 1 1.00 1 1 0 0 0 0 0 0
..................................................CATCGCGCAGAGGTTTGAGTGTA........................................................................................... 23 2 1 1.00 1 0 1 0 0 0 0 0
...................................................AGCGTGCAGAGGTTTGAGTGTC........................................................................................... 22 1 1 1.00 1 0 0 1 0 0 0 0
..................................................CATCGTCCAGAGGTTTGAGTGT............................................................................................ 22 1 1 1.00 1 0 1 0 0 0 0 0
..................................................CATCGTGCAGATGTTTGAGTGTC........................................................................................... 23 1 1 1.00 1 0 1 0 0 0 0 0
..................................................CATCGTGCAGAGGCTTGAGTGTA........................................................................................... 23 2 1 1.00 1 1 0 0 0 0 0 0
..................................................CATCGTGCAGAGGTTTCATGG............................................................................................. 21 3 2 0.50 1 0 1 0 0 0 0 0
..................................................CATCGTTCAGAGGTTTGAGAGTT........................................................................................... 23 3 2 0.50 1 0 1 0 0 0 0 0
...........................................................................................AATTCAATTTCTTAACGGTAGA................................................... 22 2 2 0.50 1 0 1 0 0 0 0 0
..................................................AATCGCGCAGAGTTTTGAGTGTC........................................................................................... 23 3 2 0.50 1 0 1 0 0 0 0 0
..................................................CATCGTGCATAGGCTTGAGTT............................................................................................. 21 3 2 0.50 1 0 1 0 0 0 0 0
..................................................CATCGTGAAGAGCTTTGAGT.............................................................................................. 20 2 4 0.25 1 1 0 0 0 0 0 0
..................................................CATCGTGCAGAGGGTTGAGGGT............................................................................................ 22 2 9 0.11 1 0 0 0 0 1 0 0
..............TAAGAATGACTACACTTT.................................................................................................................................... 18 2 13 0.08 1 0 1 0 0 0 0 0

Anti-sense strand reads

TATTAACCCATTTTATTCTTCCTTATGTGAAAACAGGTCGATTAGTTGAGGTAGCACGTCTCCAAACTCACAGAACACACAACGGATTAGCGTAAGTTAAAGACTTGCCATCTCTACCATGCGAATCTTTGTTGGATTTCGTTCATAATTAATACCAGTTTATT

************************************..(((..((((.(((.(((((.((((((((.((((((.(((.((...)).)))..)))))))))))))).))))).))).))))..)))....*********************************** 		Read size # Mismatch Hit Count Total Norm Total V040

embryo

 V060

head
.................................CGGGACGTTTAGTTGAGGTA............................................................................................................... 20 3 16 0.06 1 1 0
.........................................................GTCTTCAATCCCACAGAAC........................................................................................ 19 3 16 0.06 1 0 1

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droEre2 scaffold_4784:5981972-5982135 + der_54 ATAATTG-GG-T------AAAATAAG-------------AA--GGAATACACT-----TT--TGTCCAGCTAATCAACTCCATCGTGCAGAGGTTTGAGTGTCTTGT---GTGTTGCCTAA-TCGCATTCAATTTCTGAACGGTAGAGATGGTA-CGCTTAGAAACAACCTAAAGCAA--GTATTAAT---------------------------TATGGTCA----------------------------------------------------AATAA
droYak3 3L:3844729-3844887 + dya_46 ATAGGCG-GG-T------AAAATAAG-------------TA--AA--------------G--TAAACAGCTAATCAACTCCATCGTGCAGAAGTTTGAGTGTCCTGT---GTGTTGCCTAA-TCGCATTCAATTTCTGAACGGTAGAGATGGTA-CGCTTAGAAACAACCTAAAATGA--GTAT-AT---------------------ATAAAC-TATGGTCA----------------------------------------------------AATTA
droSec2 scaffold_2:3291324-3291498 + GTAGGTG-GGGT------AAAATAGG-------------TA--ATAAACACTT-----TT--TGGTCAGCTAATCAACTCCATCGTGCAGAGGTTTGAGTGTCCTGT---GTTTTGCCTAA-TCGCATTCAATTTCTGCA---GAGAGATGGTA-CGCTTAGAAACAACCTACAAAAA--TTGTTACT---------------------------TAT--------------------------ATATG----CA-TATAAAACTTG--------AAATA
droSim2 3l:3196007-3196186 + dsi-mir-955 GTAGGTG-GGGT------AAAATAGG-------------TA--AAGAACTCTT-----TT--TGGCCAGCTAATCAACTCCATCGTGCAGAGGTTTGAGTGTCCTGT---GTTTTGCCTAA-TCGCATTCAATTTCTGCACGGTAGAGATGGTA-CGCTTAGAAACAACCTAAAGAAA--TTATTACG---------------------------TAT--------------------------ATATG----TA-TATAAAACTTA---AA---ATATA
dm3 chr3L:3299021-3299197 + dme-mir-955 GTAGGTG-GGGT------AAAATAGG-------------TA--AGGAACACTT-----TT--TGGCCAGCTAATCAACTCCATCGTGCAGAGGTTTGAGTGTCCTGT---GTTTTGCCTAA-TCGCATTCAATTTCTGAACGGTAGAGATGGTA-CGCTTAGAAACAACCTAAAACAA--TTTTATCT---------------------------TAT--------------------------AGTTG------------AACTTA--AAATAAAGTAA
droEug1 scf7180000409466:1024696-1024869 + GTAGTTG-GG-A------TATTTTA---------------------------T-----TT--TTGCCAGCTAATCAACTCCATCGTGCAGAGGTTTGAGTGTCCTGT---GACTTGCCAAA-TCGCATTCAATCTCTGAACGGTAGAGATGGTC-AGCTTAAAAGCAACCTAAAGACTTAATCAA------ACTTTAGTTAAG--AACATTAATT--------TATTTA---------------------------------C----CCAA----AAT--
droBia1 scf7180000302428:2658379-2658557 + TAAGGTG-GG-T------AGAATAATAATTACAGGATT----------TGCTTTTC-GTT--TGGTCAGCTCATCAGCTCCATCGTGCAGAGGTTTGAGTGTCCTGT---ATCTTGCCAAA-TCGCATTCAATCTCTGAACGGTAGAGATGGTC-TGCTTCAAAGCAACATAAAACAT--TAAAAAC---------------------ATTAACTTATTTTTA----------------------------------------------------AGTAA
droTak1 scf7180000415378:64794-64949 - A-AGGTG-GG-T------AGAATAAT---TACAG---GG---------TATTTTTTGTTT--CGGCCAGCTAATCAACTCCATCGTGCAGAGGTTTGAGTGTCCTGT---GTCTCGACAAA-TCGCATTCAATCTCTGAACGGTAGAGATGGTA-TGCTCAAAAGCAACATAAATAAA--TTCCTAAT---------------------------T----------------------------------------------------------------
droEle1 scf7180000491249:1960473-1960639 - TTAGGTG-GG-T------AAAATTATTGTGGA-A---GG---------TATTT-----GT--CGGCCAGCTTTTCAACTCCATCGTGCAGAGGTTTGAGTGTCCTGT---GTCTTGCCAAT-TCGCATTCAATCTCTGAACGATAGAGATGGTC-AGCTTAAAAGCAACATAAGATCA--AAATTAC---------------------ATAAAC-----ATAA----------------------------------------------------AAACT
droRho1 scf7180000757703:662-800 - TTAGATG-GG-T------AAAATTAT-------------TA--TTTAAAAATT-----TC--TGGCTAGCTAATCAACTCCATCGTGCAGAGGTTTGAGTGTCCTGT---GTCTTGCCAAT-CCGCATTCAATCTTTGAACGATAGATATGGTC-AGCTTAAATGCAACCTAAA----------------------------------------------------------------------------------------------------------
droFic1 scf7180000454105:1620294-1620509 + TGA-GTG-GG-T------GAAGCAA------------------------CCTT-----TT--CAGCTAGCTAATCAACTCCATCGTGCAGAGGTTTGAGTGTCCTGT---GTCTTGTCAAATTCGCATTCAATCTCTGAACGGTAGAGATGGTGGAGCTATAGATCAGCCTAAATATA--TAC---ACTAAATGCTATTTGAGCAGGAAC-----TGTGATCTCGTTTATCAGGCATCATTTCTA---CAATGCATAATG--AG---TTGGA---ACTGG
droKik1 scf7180000302391:414327-414501 + TTGTGTA-GC-TAAAATTGAA------------T---T----------CGACA-----TT--TGGCCAGCTAATCAACTCCATCGTGCAGAGGTTTGAGTGTCTTGT---GTATTGCCAAA-TCGCATTCAACCTCTGAACGGTAGAGATGGTG-AGCTTTAGAGCAACCTAAATTTA--TAT---GC---------------------------TAA--------------------------ATTTTAATATTTTATAAAG-----CAAA---ATCAA
droAna3 scaffold_13337:7606407-7606539 + dan_53 TAATTTT-CC-TGAGGGTGAA------------G---GA---------TGTTT-----TT--TGAGAAGCTCATCAGCTCCATCGTGCAGAGGTTTGAGTGTCTAAT---TTTT-AACCAT-TCGCATTCAACCTTTGGACGGTAGAGATGGTC-AGTGAGAAAGCAACCTA------------------------------------------------------------------------------------------------------------
droBip1 scf7180000395543:273549-273690 + TAA-TTGTGT-TGAAGGTGAA------------G---GC---------TGTTT----TTT--TGAGAAGCTCATCAGCTCCATCGTGCAGAGGTTTGAGTGTCTATT---TTTT-AACCTT-TCGCATTCAACCTTTGGACGGTAGAGATGGTC-AGTGAAAAAGCAACCTAAAAAAG----------------------------------------------------------------------------------------------------AA
dp5 XR_group8:3252997-3253027 - ----------------------------------------------------------------------------------TCCTGCAGGGGTTTGAGGGTCCTGT---GTCTTG--------------------------------------------------------------------------------------------------------------------------------------------------------------------
droWil2 scf2_1100000004511:10215709-10215852 + dwi_58 TCAAAAA-ACAT------AATATTAT-------------TC----AAATACTT-----TTGCGTTAAGGTTGGCTGGCTCCATCGTGCTTAGGTTTGAGTGTCTTCGTTTGTTTTCTCTAA-TGGCATTCAACCTTGGAGCGATAGAGACGGCC-AATCGAGAAACAGCCTAAAG---------------------------------------------------------------------------------------------------------
droVir3 scaffold_12758:855545-855700 - dvi-mir-955 AATTA-------------AA---------GACAG----GTA--TGTATGGATC-----TC--TCATCAGTTAGCTAGCTCCATCGTGCACAGGTTTGAGTGTT-TGA---GTTTTTCCTAG-TGGCATTCAACCTTTGAACGGTAGAGATGGCC-AACTGAAAAGCGACCTAAACTAA--TAC-G-----------------------------------------------------------------------------GG---TTGGGGCAAGCCA
droMoj3 scaffold_6680:1909576-1909753 - dmo_71 GATTCTT-AT-TTGACTCGAA-T------CTCAG----GTATCCA--------------A---TATGGGTTAGCGAGCTCCATCGTGCACAGGTTTGAGTGTT-TGT---GTTT-GGCTAG-TCGCATTCAGCCTTTGAACGGTAGAGATGGCC-AACTGAAAAGCGACCTAACTGAA--------------AGCGAATCAAG--GGAACTAGGC--------CAATAG---------------------------------G----CGAG----AATCA
droGri2 scaffold_15110:657044-657186 + dgr_27 TCTTGTA-GA-T------GAAATGGA-------------TT--TA--------------A---TAAAGGTTGGCGAACTCCATCGTGCACGGGTTTGAGTGTC-TGA---GT-TTGCCAAG-TGGCATTCAGCCCCTGGACGCTAGAGATGGCC-AACTGAAAAGCAACCTAAAAACA--ATCACAGT---------------------------T------A-------------------------------------------------------AA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droEre2
ATAATTG-GG-T------AAAATAAG-------------AA--GGAATACACT-----TT--TGTCCAGCTAATCAACTCCATCGTGCAGAGGTTTGAGTGTCTTGT---GTGTTGCCTAA-TCGCATTCAATTTCTGAACGGTAGAGATGGTA-CGCTTAGAAACAACCTAAAGCAA--GTATTAAT---------------------------TATGGTCA----------------------------------------------------AATAASizeHit CountTotal NormTotalM055

Female-body		M057

Embryo		V060

Head		V040

Embryo		V107

Male-body		V108

Head		GSM1528801

follicle cells
................................................................................CATCGTGCAGAGGTTTGAGTGT..................................................................................................................................................................................221532.00532401218571852146
................................................................................CATCGTGCAGAGGTTTGAGTGTC.................................................................................................................................................................................231411.0041112100122839310
................................................................................CATCGTGCAGAGGTTTGAGTG...................................................................................................................................................................................211293.00293172941731510
................................................................................CATCGTGCAGAGGTTTGAGTGTCT................................................................................................................................................................................24139.003913168200
................................................................................CATCGTGCAGAGGTTTGAGT....................................................................................................................................................................................20135.0035401215130
.............................................................................................................................CATTCAATTTCTGAACGGTAGA.....................................................................................................................................22114.00144502300
.................................................................................ATCGTGCAGAGGTTTGAGTGT..................................................................................................................................................................................21113.00132100730
.................................................................................ATCGTGCAGAGGTTTGAGTGTC.................................................................................................................................................................................22110.00101200610
.................................................................................ATCGTGCAGAGGTTTGAGTGTCT................................................................................................................................................................................2319.0090402030
................................................................................CATCGTGCAGAGGTTTGAG.....................................................................................................................................................................................1918.0080100520
................................................................................CATCGTGCAGAGGTTTGAGTGTT.................................................................................................................................................................................2315.0051001210
................................................................................CATCGTGCAGAGGTTTGAGTGA..................................................................................................................................................................................2214.0040000220
................................................................................CATCGTGCAGAGGTTTGAGTGTG.................................................................................................................................................................................2312.0020001010
................................................................................CATCGTGCAGAGGTTTGAGTGC..................................................................................................................................................................................2212.0020200000
................................................................................CATCGTGCAGAGGTTTGAGTGTCA................................................................................................................................................................................2412.0020001010
..................................................................................TCGTGCAGAGGTTTGAGTGTCT................................................................................................................................................................................2212.0022000000
................................................................................CATCGTGCAGAGGTTTGAGTT...................................................................................................................................................................................2112.0021000010
.............................................................................................................................CATTCAATTTCTGAACGGTAGT.....................................................................................................................................2211.0010000100
................................................................................CATCGTGCAGAGGTTTGAGTC...................................................................................................................................................................................2111.0011000000
................................................................................CATCGTGCAGAGGTTTGAGTGTCTG...............................................................................................................................................................................2511.0010001000
................................................................................CATCGTGCAGAGGTTTGAGTGTCTAA..............................................................................................................................................................................2611.0010000010
................................................................................CATCGTGCAGAGGTTTGAGTA...................................................................................................................................................................................2111.0010000100
.............................................................................................................................CATTCAATTTCTGAACGGTAGAA....................................................................................................................................2311.0011000000
................................................................................CATCGTGCAGAGGTTTGAGTGTA.................................................................................................................................................................................2311.0011000000
.................................................................................ATCGTGCAGAGGTTTGAGTGTCTT...............................................................................................................................................................................2411.0010000010
.................................................................................ATCGTGCAGAGGTTTGAGTG...................................................................................................................................................................................2011.0010000010
.................................................................................ATCGTGCAGAGGTTTGAGT....................................................................................................................................................................................1911.0010001000
................................................................................CATCGTGCAGAGGTTTGAGTGG..................................................................................................................................................................................2211.0010001000
..............................................................TGTCCAGCTAATCAACTCC.......................................................................................................................................................................................................1911.0010100000
droYak3
ATAGGCG-GG-T------AAAATAAG-------------TA--AA--------------G--TAAACAGCTAATCAACTCCATCGTGCAGAAGTTTGAGTGTCCTGT---GTGTTGCCTAA-TCGCATTCAATTTCTGAACGGTAGAGATGGTA-CGCTTAGAAACAACCTAAAATGA--GTAT-AT---------------------ATAAAC-TATGGTCA----------------------------------------------------AATTASizeHit CountTotal NormTotalM026

Head		M043

Female-body		M056

Embryo		V046

Embryo		V052

Head		V058

Head		V120

Male-body		SRR1275488

Male larvae		SRR1275486

Male prepupae		SRR1275484

Male prepupae		GSM1528802

follicle cells
................................................................................CATCGTGCAGAAGTTTGAGTGTC.................................................................................................................................................................................2311520.0015206816121120604150000
................................................................................CATCGTGCAGAAGTTTGAGTGT..................................................................................................................................................................................221151.0015127213416812330000
.............................................................................................................................CATTCAATTTCTGAACGGTAGA.....................................................................................................................................22135.0035033020000000
.................................................................................ATCGTGCAGAAGTTTGAGTGTCC................................................................................................................................................................................23130.0030002910000000
................................................................................CATCGTGCAGAAGTTTGAGTGTCT................................................................................................................................................................................24129.00291221100130000
.................................................................................ATCGTGCAGAAGTTTGAGTGTC.................................................................................................................................................................................22122.0022121540000000
................................................................................CATCGTGCAGAAGTTTGAGTGC..................................................................................................................................................................................22118.0018401200020000
................................................................................CATCGTGCAGAAGTTTGAGTGTCC................................................................................................................................................................................24113.0013101100010000
................................................................................CATCGTGCAGAAGTTTGAGTG...................................................................................................................................................................................2119.00902010150000
.................................................................................ATCGTGCAGAAGTTTGAGTGTCT................................................................................................................................................................................2315.00531100000000
.............................................................................................................................CATTCAATTTCTGAACGGTAGT.....................................................................................................................................2215.00500500000000
..............................................................................................................................ATTCAATTTCTGAACGGTAGAGT...................................................................................................................................2314.00420200000000
..............................................................TAAACAGCTAATCAACTCC.......................................................................................................................................................................................................1914.00400310000000
................................................................................CATCGTGCAGAAGTTTGAGT....................................................................................................................................................................................2013.00301000020000
....................................................................................GTGCAGAAGTTTGAGTGTC.................................................................................................................................................................................1913.00300300000000
...............................................................................CCATCGTGCAGAAGTTTGAGTGTC.................................................................................................................................................................................2413.00300300000000
................................................................................CATCGTGCAGAAGTTTGAGTGTT.................................................................................................................................................................................2313.00300100020000
..................................................................................TCGTGCAGAAGTTTGAGTGTCCTG..............................................................................................................................................................................2412.00200110000000
...........................................................G--TAAACAGCTAATCAACTC........................................................................................................................................................................................................1912.00200200000000
................................................................................CATCGTGCAGAAGTTTGAGTGG..................................................................................................................................................................................2212.00220000000000
................................................................................CATCGTGCAGAAGTTTGAGTGTG.................................................................................................................................................................................2312.00200110000000
.................................................................................ATCGTGCAGAAGTTTGAGTGTCCT...............................................................................................................................................................................2412.00200200000000
................................................................................CATCGTGCAGAAGTTTGAGTGA..................................................................................................................................................................................2211.00100000010000
................................................................................CATCGTGCAGAAGTTTGAGA....................................................................................................................................................................................2011.00100000100000
..................................................................................TCGTGCAGAAGTTTGAGTGTCCC...............................................................................................................................................................................2311.00100100000000
................................................................................CATCGTGCAGAAGTTTGAGC....................................................................................................................................................................................2011.00100100000000
.................................................................................ATCGTGCAGAAGTTTGAGTGTCCTG..............................................................................................................................................................................2511.00100010000000
..............................................................TAAACAGCTAATCAACTC........................................................................................................................................................................................................1811.00100100000000
................................................................................CATCGTGCAGAAGTTTGAGTGTCA................................................................................................................................................................................2411.00100010000000
.................................................................................................................................CAATTTCTGAACGGTAGT.....................................................................................................................................1811.00100100000000
.............................................................................................................................CATTCAATTTCTGAACGGTAGC.....................................................................................................................................2211.00100100000000
...............................................................................................................................TTCAATTTCTGAACGGTAGAGT...................................................................................................................................2211.00100100000000
..................................................................................TCGTGCAGAAGTTTGAGTGT..................................................................................................................................................................................2011.00100100000000
................................................................................CATCGTGCAGAAGTTTGAGTT...................................................................................................................................................................................2111.00100000010000
................................................................................CATCGTGCAGAAGTTTGAG.....................................................................................................................................................................................1911.00100100000000
..............................................................................................................................ATTCAATTTCTGAACGGTAGA.....................................................................................................................................2111.00100100000000
...............................................................................CCATCGTGCAGAAGTTTGAGTGT..................................................................................................................................................................................2311.00100010000000
droSec2
GTAGGTG-GGGT------AAAATAGG-------------TA--ATAAACACTT-----TT--TGGTCAGCTAATCAACTCCATCGTGCAGAGGTTTGAGTGTCCTGT---GTTTTGCCTAA-TCGCATTCAATTTCTGCA---GAGAGATGGTA-CGCTTAGAAACAACCTACAAAAA--TTGTTACT---------------------------TAT--------------------------ATATG----CA-TATAAAACTTG--------AAATASizeHit CountTotal NormTotalM054

Female-body		V113

Male-body		V114

Embryo		V115

Head
No Reads
droSim2
GTAGGTG-GGGT------AAAATAGG-------------TA--AAGAACTCTT-----TT--TGGCCAGCTAATCAACTCCATCGTGCAGAGGTTTGAGTGTCCTGT---GTTTTGCCTAA-TCGCATTCAATTTCTGCACGGTAGAGATGGTA-CGCTTAGAAACAACCTAAAGAAA--TTATTACG---------------------------TAT--------------------------ATATG----TA-TATAAAACTTA---AA---ATATASizeHit CountTotal NormTotalM023

Head		M024

Male-body		M025

Embryo		M053

Female-body		O001

Testis		O002

Head		SRR553485

Ovary		SRR553486

Ovary		SRR553487

Ovary		SRR553488

Ovary		SRR618934

Ovary		V044

Embryo		SRR902008

Ovary		SRR902009

Testis		SRR1275487

Male larvae		SRR1275485

Male prepupae		SRR1275483

Male prepupae
................................................................................CATCGTGCAGAGGTTTGAGTGTC.................................................................................................................................................................................231882.008825043613900513339525113
................................................................................CATCGTGCAGAGGTTTGAGTGT..................................................................................................................................................................................221171.00171204100126131158413200
.................................................................................ATCGTGCAGAGGTTTGAGTGTC.................................................................................................................................................................................221162.0016210124003000212910010
.............................................................................................................................CATTCAATTTCTGCACGGTAGT.....................................................................................................................................221110.00110518500020670400000
................................................................................CATCGTGCAGAGGTTTGAGTG...................................................................................................................................................................................21188.00883013022120126001100
..............................................................TGGCCAGCTAATCAACTC........................................................................................................................................................................................................18164.0064006400000000000000
.............................................................................................................................CATTCAATTTCTGCACGG.........................................................................................................................................18151.0051005000100000000000
.............................................................................................................................CATTCAATTTCTGCACGGTAGA.....................................................................................................................................22149.00490014000229501700000
.............................................................................................................................CATTCAATTTCTGCACGGTAG......................................................................................................................................21137.00370014001123151000000
...........................................................T--TGGCCAGCTAATCAACTC........................................................................................................................................................................................................19133.0033003200000000100000
.................................................................................ATCGTGCAGAGGTTTGAGTGT..................................................................................................................................................................................21128.002820800024124401000
..............................................................TGGCCAGCTAATCAACTCC.......................................................................................................................................................................................................19117.001700800100000800000
.................................................................................ATCGTGCAGAGGTTTGAGTGTCC................................................................................................................................................................................23114.001410501100000600000
................................................................................CATCGTGCAGAGGTTTGAGTGG..................................................................................................................................................................................22113.0013201100000000000000
................................................................................CATCGTGCAGAGGTTTGAGT....................................................................................................................................................................................20113.001300000141211300000
..........................................................TT--TGGCCAGCTAATCAACTC........................................................................................................................................................................................................20112.0012001200000000000000
................................................................................CATCGTGCAGAGGTTTGAG.....................................................................................................................................................................................19111.001120602001000000000
.............................................................................................................................CATTCAATTTCTGCACGGTAGG.....................................................................................................................................2218.00810600000000100000
................................................................................CATCGTGCAGAGGTTTGA......................................................................................................................................................................................1816.00600002400000000000
....................................................T-----TT--TGGCCAGCTAATCAACTC........................................................................................................................................................................................................2116.00600600000000000000
.................................................................................ATCGTGCAGAGGTTTGAGTGTCCTG..............................................................................................................................................................................2516.00600400000000200000
.................................................................................ATCGTGCAGAGGTTTGAGTGTCT................................................................................................................................................................................2315.00500400000000100000
...........................................................T--TGGCCAGCTAATCAACTCC.......................................................................................................................................................................................................2015.00500500000000000000
.............................................................................................................................CATTCAATTTCTGCACGGTAGC.....................................................................................................................................2215.00500400000010000000
................................................................................CATCGTGCAGAGGTTTGAGTGTCT................................................................................................................................................................................2415.00500300000000200000
.............................................................................................................................CATTCAATTTCTGCACGGTAGTT....................................................................................................................................2314.00400100010110000000
................................................................................CATCGTGCAGAGGTTTGAGTGA..................................................................................................................................................................................2214.00400000022000000000
.................................................................................ATCGTGCAGAGGTTTGAGTGTCCT...............................................................................................................................................................................2413.00300200000000100000
................................................................................CATCGTGCAGAGGTTTGAGTGC..................................................................................................................................................................................2213.00300300000000000000
................................................................................CATCGTGCAGAGGTTTGAGTGTCC................................................................................................................................................................................2413.00300100100010000000
.................................................................................ATCGTGCAGAGGTTTGAGT....................................................................................................................................................................................1913.00300000000003000000
................................................................................CATCGTGCAGAGGTTTGAGTGTG.................................................................................................................................................................................2312.00200000000000200000
..........................................................TT--TGGCCAGCTAATCAACTCC.......................................................................................................................................................................................................2112.00200200000000000000
.................................................................................ATCGTGCAGAGGTTTGAGTGTT.................................................................................................................................................................................2212.00200000000010001000
..................................................................................TCGTGCAGAGGTTTGAGTGTCCT...............................................................................................................................................................................2312.00200200000000000000
.................................................................................ATCGTGCAGAGGTTTGAGTG...................................................................................................................................................................................2012.00210000100000000000
.................................................................................ATCGTGCAGAGGTTTGAGTGTCA................................................................................................................................................................................2312.00200100000100000000
.............................................................................................................................CATTCAATTTCTGCACGGTA.......................................................................................................................................2011.00100000000001000000
.................................................................................ATCGTGCAGAGGTTTGAGTGC..................................................................................................................................................................................2111.00100100000000000000
................................................................................CATCGTGCAGAGGTTTGAGTGTT.................................................................................................................................................................................2311.00100000000000100000
................................................................................CATCGTGCAGAGGTTTGT......................................................................................................................................................................................1811.00110000000000000000
................................................................................CATCGTGCAGAGGTTTGAGA....................................................................................................................................................................................2011.00100000001000000000
.................................................................................ATCGTGCAGAGGTTTGAGTGG..................................................................................................................................................................................2111.00100100000000000000
................................................................................CATCGTGCAGAGGTTTGC......................................................................................................................................................................................1811.00110000000000000000
..............................................................................................................................ATTCAATTTCTGCACGGTAGA.....................................................................................................................................2111.00100000000000100000
..................................................................................TCGTGCAGAGGTTTGAGTGTCC................................................................................................................................................................................2211.00100100000000000000
....................................................................................GTGCAGAGGTTTGAGTGTC.................................................................................................................................................................................1911.00100000000001000000
....................................................................................GTGCAGAGGTTTGAGT....................................................................................................................................................................................1611.00100000000001000000
..............................................................TGGCCAGCTAATCAACTCCC......................................................................................................................................................................................................2011.00100000000000100000
.............................................................................................................................CATTCAATTTCTGCACGGTAGTA....................................................................................................................................2311.00100000000010000000
...............................................ACTCTT-----TT--TGGCCAGCT.................................................................................................................................................................................................................1730.33100000000001000000
dm3
GTAGGTG-GGGT------AAAATAGG-------------TA--AGGAACACTT-----TT--TGGCCAGCTAATCAACTCCATCGTGCAGAGGTTTGAGTGTCCTGT---GTTTTGCCTAA-TCGCATTCAATTTCTGAACGGTAGAGATGGTA-CGCTTAGAAACAACCTAAAACAA--TTTTATCT---------------------------TAT--------------------------AGTTG------------AACTTA--AAATAAAGTAASizeHit CountTotal NormTotalGSM154618

Ovary		GSM154620

Ovary		GSM154621

Ovary		GSM154622

Ovary		GSM180328

Head		GSM180329

Mixed-body		GSM180330

Embryo		GSM180331

Embryo		GSM180332

Embryo		GSM180333

Embryo		GSM180334

Larvae		GSM180335

Disc		GSM180336

Pupae		GSM180337

S2		GSM239041

Head		GSM239050

Head		GSM239051

S2		GSM239052

S2		GSM246084

Head		GSM266765

S2		GSM280082

Ovary		GSM280083

Ovary		GSM280084

Ovary		GSM280085

Testis		GSM280086

Ovary		GSM280087

S2-NP		GSM280088

S2-NP		GSM312995

Head		GSM313160

Head		GSM313161

Head		GSM313162

Head		GSM313163

Head		GSM313164

Head		GSM313165

Head		GSM343287

Embryo		GSM379050

Ovary		GSM379051

Ovary		GSM379052

Ovary		GSM379053

Ovary		GSM379054

Ovary		GSM379055

Ovary		GSM379056

Ovary		GSM379057

Ovary		GSM379058

Ovary		GSM379059

Ovary		GSM379060

Ovary		GSM379061

Ovary		GSM379062

Ovary		GSM379063

Ovary		GSM379064

Ovary		GSM379065

Ovary		GSM379066

Ovary		GSM379067

Ovary		GSM424739

S2		GSM424740

S2		GSM424741

S2		GSM467729

Female-body		GSM467730

Female-body		GSM467731

Female-body		M002

CS		M003

Male-body		M004

Male-body		M005

ML-DmD32		M006

ML-DmD32		M029

OSC		M030

OSC		M031

OSC		M032

S2-R+		M033

S2-R+		M034

S2-R+		M035

S2-R+		M036

S2-R+		M037

S2-R+		M038

S2-R+		M039

S2-R+		M048

S2-R+		OSS2

OSS		OSS6

OSS		OSS7

OSS		OSS8

OSS		S1

Head		S10

Embryo		S11

Embryo		S12

Embryo		S13

Embryo		S14

Embryo		S15

S2-GMR		S16

Kc		S17

Larvae		S18

Larvae		S19

Pupae		S2

Head		S20

Pupae		S21

Disc		S22

Head		S23

Female-body		S24

Male-body		S25

Larvae		S26

Larvae		S27

Pupae		S28

Pupae		S29

Head		S3

Male-body		S30

S2-GMR		S31

S2		S32

S2		S33

Kc		S34

Kc		S35

Kc		S4

Female-body		S5

Disc		S6

Embryo		S7

Embryo		S8

S2		S9

Embryo		SRR001337

Head		SRR001338

Head		SRR001339

Head		SRR001340

Head		SRR001341

Head		SRR001342

Head		SRR001343

Head		SRR001344

Head		SRR001345

Head		SRR001346

Head		SRR001347

Head		SRR001348

Head		SRR001349

Head		SRR001664

Head		SRR010951

Ovary		SRR010952

Ovary		SRR010953

Ovary		SRR010954

Ovary		SRR010955

Ovary		SRR010956

Ovary		SRR010957

Ovary		SRR010958

Ovary		SRR010959

Ovary		SRR010960

Ovary		SRR014268

Embryo		SRR014269

Embryo		SRR014270

Embryo		SRR014271

Embryo		SRR014272

Embryo		SRR014273

Ovary		SRR014274

Ovary		SRR014275

Ovary		SRR014276

Ovary		SRR014277

Ovary		SRR014278

Ovary		SRR014279

Ovary		SRR014280

Ovary		SRR014281

Ovary		SRR014282

Ovary		SRR023197

S2		SRR023399

S2		SRR023400

S2		SRR023402

S2		SRR023407

S2		SRR029028

S2		SRR029029

S2		SRR029030

S2		SRR029031

S2		SRR029032

S2		SRR029033

S2		SRR029608

Head		SRR029633

Head		SRR030145

gb3		SRR031692

Head		SRR031693

Head		SRR031694

Head		SRR031696

Head		SRR031697

Head		SRR031698

Head		SRR031699

Head		SRR031700

Head		SRR031701

Head		SRR031702

Head		SRR031703

Head		SRR031704

Head		SRR032092

S2		SRR032093

S2		SRR032094

S2		SRR032095

S2-NP		SRR032096

S2-NP		SRR032152

Head		SRR060643

Testis		SRR060644

Ovary		SRR060645

Testis		SRR060646

Ovary		SRR060647

Ovary		SRR060648

Ovary		SRR060649

Ovary		SRR060650

Testis		SRR060651

Ovary		SRR060652

Testis		SRR060653

Ovary		SRR065151

Ovary		SRR065152

Ovary		SRR065153

Ovary		SRR065154

Ovary		SRR065155

Ovary		SRR065800

Ovary		SRR065801

Ovary		SRR065802

Ovary		SRR065803

Ovary		SRR065804

Ovary		SRR065805

Ovary		SRR065806

Ovary		SRR065807

Ovary		SRR097865

S2-NP		SRR097866

S2-NP		SRR097867

S2-NP		SRR298536

Ovary		SRR298537

Ovary		SRR298711

Ovary		SRR298712

Ovary		SRR317110

Ovary		SRR317111

Ovary		SRR317112

Ovary		SRR317113

Ovary		SRR317114

Ovary		SRR317115

Ovary		SRR317116

Ovary		SRR317117

Ovary		SRR341115

S2		SRR341116

S2		SRR341117

S2		SRR341118

S2		SRR351332

Mixed-body		SRR351333

Mixed-body		T004

OSC		T005

CME-L1		V001

Embryo		V002

Embryo		V003

S2		V006

Female-body		V007

Head		V008

S2		V009

CME-L1		V010

ML-DmD20-C5		V011

Sg4		V012

Male-body		V013

Head		V014

DTT		V015

DreRFHV		V018

Kc167		V019

GM2		V020

S2-R+		V021

ML-DmD21		V022

ML-DmD32		V023

Head		V024

Kc167		V025

S2-R+		V026

1182-2H		V027

ML-DmD21		V028

CME-W1-Cl.8+		V029

ML-DmD9		V030

ML-DmD8		V031

GM2		V032

S1		V033

CME-W1-Cl.8+		V034

ML-DmD16-C3		V035

ML-DmD32		V036

ML-DmD20-C5		V037

S2		V038

S2		V063

Ovary		V0632

Ovary		V064

Ovary		V0642

Ovary		V065

Ovary		V0652

Ovary		V066

Ovary		V0662

Ovary		V067

S2-NP		V073

mbn2		V074

S3		V075

ML-DmBG1-C1		V076

ML-DmBG3-C2		V077

Head		V078

Head		V079

Head		V080

Head		V081

Embryo		V082

Embryo		V083

Male-body		V084

Female-body		V085

CME-W2		V086

Female-body		V088

Ovary		V0882

Ovary		V089

Ovary		V0892

Ovary		V090

Male-body		V091

fGS/OSS		V092

Male-body		V093

Male-body		V094

S2-R+		V095

S2-R+		V096

Ovary		V097

Ovary		V098

Ovary		V125

ML-DmD9		V126

CME-L1		V127

G2		V128

S3		V129

ML-DmBG1-C1		V130

ML-DmBG3-C2		V131

ML-DmD16-C3		V132

ML-DmD32		V133

Sg4		V134

ML-DmD8		V135

CME-W2		V136

Male-body		V137

Head		V138

Male-body		V139

Female-body		V140

Female-body		V141

Female-body		V142

Female-body		V144

OSC		V145

S2		V146

S1		V147

1182-2H		V148

mbn2		GSM1528798

follicle cells
................................................................................CATCGTGCAGAGGTTTGAGTGTC.................................................................................................................................................................................2311904.0019040000010016000006000000000001000000003003004212203112200000000000000000000000000000042000559630142171092123200000030128060000000000000000000000000103411153441402000000000002004410080013020001006213390011729000001200000003012843380081011002020000027112711000001001002833503500000004100202111011001011143310910504723200299012140217153410157411065116501571104770
................................................................................CATCGTGCAGAGGTTTGAGTGT..................................................................................................................................................................................2211634.001634000001000300000000001014000000000000302200231031110450004300000000000000000000000000000011531052222221188100000011015001020001170100000000000000200003431454021000000000003202002124020800000013590100301352000000400000700137137173031123538002000000015596001000081030001018000020000111001712632633111020001236137118032312271362214060200009200220009200130109396110001020
................................................................................CATCGTGCAGAGGTTTGAGTG...................................................................................................................................................................................211579.00579000000000100000000000002000100000000200110100100200120001100000000000000000000000000000000020010200050000000000000000100010000000000000000001100010112310000000000000020002101020000000000030110001081000000000000000001257614002913110000000051240001000510100140140000000000000001501203021100041442253870027613901911000351110001000102014729104000610
................................................................................CATCGTGCAGAGGTTTGAGT....................................................................................................................................................................................201175.00175000000000000000000000001000000000000000000001000000110000100000000000000000000000000000010001010100000000000000000001000000100000000000000000000101008100000000000000010100000000000000000111000000040000000000000000102064004501000000000055000000000000000000010000000000001601030000000232102520025446061000065000000100000112110000000
.............................................................................................................................CATTCAATTTCTGAACGGTAGA.....................................................................................................................................22185.008500000000000000000000000000000000000000000200100000130000000000000000000000000000000000000000000000000100000000001000000000000000000000000000000000000100000000000000010000000010000000000011000001000000000000000000035100119010000000000915000000000000000000000000000200000101001000000000001600000002000001000000000000001000000000000
................................................................................CATCGTGCAGAGGTTTGAG.....................................................................................................................................................................................19162.0062000000000000000000000000000000101000000000000010000100000000000000000000000000000000000000000001000000000000000000000000010001000000000000000000000003000000000000000110010000100020000000000100000000000000000000000181100010000000000000000000000000000000000000000000000200102010000003420021000001003200003000000100000021200000000
................................................................................CATCGTGCAGAGGTTTGAGTGTCT................................................................................................................................................................................24142.0042000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000100000000200000000000000000000000000000000000000000000000000000000000030000101000000000003000000000001000001000000000000000000000000000001000310000001002000000000000200000332361000000
.................................................................................ATCGTGCAGAGGTTTGAGTGTC.................................................................................................................................................................................22126.0026000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000003002000000000000000000000000000000000000000000000000010000000000010100000000000000003000000000000000000000000000000000000000000000011000610000000000100000000000100000000110000100
.............................................................................................................................CATTCAATTTCTGAACGGTAG......................................................................................................................................21121.0021000000000000000000000000000000000000000100000000010000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000100000000000110100020001010000001000000000000000000000000000000021100100000000000000000000000000000000000000000000000011000000000000200000000000000000000000000000000000000000
.................................................................................ATCGTGCAGAGGTTTGAGTGT..................................................................................................................................................................................21118.0018000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000100000000000000000100000000000000000000000000100000000000000000001100000001000000000000000000000000000000000000000010400000000000000001000000000000001101000000
................................................................................CATCGTGCAGAGGTTTGAGTGTT.................................................................................................................................................................................23116.0016000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000100000000000000002100000000000000000000000000000000010200000000000010100010000102000000000000000000000000000000
................................................................................CATCGTGCAGAGGTTTGAGTGA..................................................................................................................................................................................22110.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000100000000020000000000000000000000000000000000000000000000000000000000000000001000000000000000100000001000000000000110000000010000000000000000000000000000000000
................................................................................CATCGTGCAGAGGTTTGAGTT...................................................................................................................................................................................21110.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000100000010000000000001000000000000000000000000000000000000000000000000000000000000103000000000000000000010000000000
.................................................................................ATCGTGCAGAGGTTTGAGTG...................................................................................................................................................................................2018.008000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000002000000000000000000000001000000000000000000000000000000000000000010000000000000000002000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000
................................................................................CATCGTGCAGAGGTTTGAGTGTA.................................................................................................................................................................................2318.008000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000005100000000000000000000000000000000000000000000000010000000000001000000000000000000000000000000
................................................................................CATCGTGCAGAGGTTTGAGTGTCA................................................................................................................................................................................2416.006000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000200000000000000000010000000000000000000000
.................................................................................ATCGTGCAGAGGTTTGAGTGTCC................................................................................................................................................................................2316.006000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000002000000000000000000000000000000000120000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................CATCGTGCAGAGGTTTGA......................................................................................................................................................................................1815.005000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000001000000000000001000000000000000000000000000000000000000
....................................................................................GTGCAGAGGTTTGAGTGT..................................................................................................................................................................................1815.005000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000100000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000
..............................................................TGGCCAGCTAATCAACTCC.......................................................................................................................................................................................................1914.004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................CATCGTGCAGAGGTTTGAGTGG..................................................................................................................................................................................2214.004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000002000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000
................................................................................CATCGTGCAGAGGTTTGAGTGTCC................................................................................................................................................................................2414.004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000001000000000000000000000000000000000000000000000000000100000000000000000000000100000000000000000
..............................................................TGGCCAGCTAATCAACTC........................................................................................................................................................................................................1813.003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................CATCGTGCAGAGGTTTGAGTGTATC...............................................................................................................................................................................2513.003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................ATCGTGCAGAGGTTTGAGTGTT.................................................................................................................................................................................2213.003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000
................................................................................CATCGTGCAGAGGTTTGAT.....................................................................................................................................................................................1912.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000010000000000000000000000000000000000000000000
....................................................................................GTGCAGAGGTTTGAGTGTA.................................................................................................................................................................................1912.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................ATCGTGCAGAGGTTTGAGTGTCCT...............................................................................................................................................................................2412.002000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................ATCGTGCAGAGGTTTGAGT....................................................................................................................................................................................1912.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000100000000
................................................................................CATCGTGCAGAGGTTTGAGG....................................................................................................................................................................................2012.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001100000000000000000000000000000
................................................................................CATCGTGCAGAGGTTTGAGA....................................................................................................................................................................................2012.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................CATCGTGCAGAGGTTTGAGTGTG.................................................................................................................................................................................2312.002000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................CATTCAATTTCTGAACGGTAGT.....................................................................................................................................2212.002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000
.............................................................................................................................CATTCAATTTCTGAACGGTAGAA....................................................................................................................................2311.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000
...........................................................T--TGGCCAGCTAATCAACTC........................................................................................................................................................................................................1911.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................CATTCAATTTCTGAACGGT........................................................................................................................................1911.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................CATCGTGCAGAGGTTTGAGAA...................................................................................................................................................................................2111.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000
................................................................................CATCGTGCAGAGGTTTGAGTGTAT................................................................................................................................................................................2411.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000
................................................................................CATCGTGCAGAGGTTTGAGTAA..................................................................................................................................................................................2211.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000
................................................................................CATCGTGCAGAGGTTTGAGTGTCCCCC---..........................................................................................................................................................................2711.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................CATTCAATTTCTGAACGGTAGAATC..................................................................................................................................2511.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................GTGCAGAGGTTTGAGTGTC.................................................................................................................................................................................1911.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................TTCAATTTCTGAACGGTAGAGA...................................................................................................................................2211.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
.................................................................................ATCGTGCAGAGGTTTGAGTGTCT................................................................................................................................................................................2311.001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
droEug1
GTAGTTG-GG-A------TATTTTA---------------------------T-----TT--TTGCCAGCTAATCAACTCCATCGTGCAGAGGTTTGAGTGTCCTGT---GACTTGCCAAA-TCGCATTCAATCTCTGAACGGTAGAGATGGTC-AGCTTAAAAGCAACCTAAAGACTTAATCAA------ACTTTAGTTAAG--AACATTAATT--------TATTTA---------------------------------C----CCAA----AAT--SizeHit CountTotal NormTotal
No Reads
droBia1
TAAGGTG-GG-T------AGAATAATAATTACAGGATT----------TGCTTTTC-GTT--TGGTCAGCTCATCAGCTCCATCGTGCAGAGGTTTGAGTGTCCTGT---ATCTTGCCAAA-TCGCATTCAATCTCTGAACGGTAGAGATGGTC-TGCTTCAAAGCAACATAAAACAT--TAAAAAC---------------------ATTAACTTATTTTTA----------------------------------------------------AGTAASizeHit CountTotal NormTotal
No Reads
droTak1
A-AGGTG-GG-T------AGAATAAT---TACAG---GG---------TATTTTTTGTTT--CGGCCAGCTAATCAACTCCATCGTGCAGAGGTTTGAGTGTCCTGT---GTCTCGACAAA-TCGCATTCAATCTCTGAACGGTAGAGATGGTA-TGCTCAAAAGCAACATAAATAAA--TTCCTAAT---------------------------T----------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droEle1
TTAGGTG-GG-T------AAAATTATTGTGGA-A---GG---------TATTT-----GT--CGGCCAGCTTTTCAACTCCATCGTGCAGAGGTTTGAGTGTCCTGT---GTCTTGCCAAT-TCGCATTCAATCTCTGAACGATAGAGATGGTC-AGCTTAAAAGCAACATAAGATCA--AAATTAC---------------------ATAAAC-----ATAA----------------------------------------------------AAACTSizeHit CountTotal NormTotal
No Reads
droRho1
TTAGATG-GG-T------AAAATTAT-------------TA--TTTAAAAATT-----TC--TGGCTAGCTAATCAACTCCATCGTGCAGAGGTTTGAGTGTCCTGT---GTCTTGCCAAT-CCGCATTCAATCTTTGAACGATAGATATGGTC-AGCTTAAATGCAACCTAAA----------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droFic1
TGA-GTG-GG-T------GAAGCAA------------------------CCTT-----TT--CAGCTAGCTAATCAACTCCATCGTGCAGAGGTTTGAGTGTCCTGT---GTCTTGTCAAATTCGCATTCAATCTCTGAACGGTAGAGATGGTGGAGCTATAGATCAGCCTAAATATA--TAC---ACTAAATGCTATTTGAGCAGGAAC-----TGTGATCTCGTTTATCAGGCATCATTTCTA---CAATGCATAATG--AG---TTGGA---ACTGGSizeHit CountTotal NormTotal
No Reads
droKik1
TTGTGTA-GC-TAAAATTGAA------------T---T----------CGACA-----TT--TGGCCAGCTAATCAACTCCATCGTGCAGAGGTTTGAGTGTCTTGT---GTATTGCCAAA-TCGCATTCAACCTCTGAACGGTAGAGATGGTG-AGCTTTAGAGCAACCTAAATTTA--TAT---GC---------------------------TAA--------------------------ATTTTAATATTTTATAAAG-----CAAA---ATCAASizeHit CountTotal NormTotal
No Reads
droAna3
TAATTTT-CC-TGAGGGTGAA------------G---GA---------TGTTT-----TT--TGAGAAGCTCATCAGCTCCATCGTGCAGAGGTTTGAGTGTCTAAT---TTTT-AACCAT-TCGCATTCAACCTTTGGACGGTAGAGATGGTC-AGTGAGAAAGCAACCTA------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM044

Female-body		M058

Embryo		V039

Embryo		V055

Head		V105

Male-body		V106

Head
................................................................................CATCGTGCAGAGGTTTGAGTGTC.................................................................................................................................................................................231158.0015813851382118
................................................................................CATCGTGCAGAGGTTTGAGTGT..................................................................................................................................................................................221149.0014912133196240
................................................................................CATCGTGCAGAGGTTTGAGTGTCT................................................................................................................................................................................24157.0057416621613
................................................................................CATCGTGCAGAGGTTTGAGTG...................................................................................................................................................................................21148.004843222116
.............................................................................................................................CATTCAACCTTTGGACGGTAGA.....................................................................................................................................22133.00337191141
................................................................................CATCGTGCAGAGGTTTGAGT....................................................................................................................................................................................20112.0012210351
..................................................................................TCGTGCAGAGGTTTGAGTGTCT................................................................................................................................................................................2218.008700001
...............................................................................................................................TTCAACCTTTGGACGGTAGAG....................................................................................................................................2118.008310040
................................................................................CATCGTGCAGAGGTTTGAGTGC..................................................................................................................................................................................2217.007060100
.............................................................................................................................CATTCAACCTTTGGACGGTAG......................................................................................................................................2116.006410100
................................................................................CATCGTGCAGAGGTTTGAGTGTT.................................................................................................................................................................................2316.006000132
...............................................................................................................................TTCAACCTTTGGACGGTAGAGT...................................................................................................................................2215.005120110
................................................................................CATCGTGCAGAGGTTTGAGTGTCC................................................................................................................................................................................2413.003030000
...............................................................................CCATCGTGCAGAGGTTTGAGTGT..................................................................................................................................................................................2313.003100011
.................................................................................ATCGTGCAGAGGTTTGAGTGTCT................................................................................................................................................................................2313.003000003
...............................................................................................................................TTCAACCTTTGGACGGTAGAGA...................................................................................................................................2212.002010001
.................................................................................ATCGTGCAGAGGTTTGAGTG...................................................................................................................................................................................2012.002100010
..............................................................................................................................ATTCAACCTTTGGACGGTAGA.....................................................................................................................................2112.002110000
................................................................................CATCGTGCAGAGGTTTGAGTT...................................................................................................................................................................................2112.002001010
..................................................................................TCGTGCAGAGGTTTGAGTGTC.................................................................................................................................................................................2111.001001000
.................................................................................ATCGTGCAGAGGTTTGAGTGTC.................................................................................................................................................................................2211.001100000
...............................................................................................................................TTCAACCTTTGGACGGTAGA.....................................................................................................................................2011.001000100
................................................................................CATCGTGCAGAGGTTTGAG.....................................................................................................................................................................................1911.001000010
................................................................................................................................TCAACCTTTGGACGGTAGAG....................................................................................................................................2011.001100000
...........................................................................................................................CGCATTCAACCTTTGGACGGTAGTT....................................................................................................................................2511.001010000
..............................................................................................................................ATTCAACCTTTGGACGGTAGAGT...................................................................................................................................2311.001010000
...........................................................................................................................CGCATTCAACCTTTGGACGGTAG......................................................................................................................................2311.001001000
...............................................................................CCATCGTGCAGAGGTTTGAGT....................................................................................................................................................................................2111.001010000
................................................................................CATCGTGCAGAGGTTTGAGTA...................................................................................................................................................................................2111.001000010
.............................................................................................................................CATTCAACCTTTGGACGGTAGT.....................................................................................................................................2211.001010000
...................................................TT-----TT--TGAGAAGCTCATCAGCTC........................................................................................................................................................................................................2211.001010000
................................................................................CATCGTGCAGAGGTTTGAT.....................................................................................................................................................................................1911.001000001
.................................................................................ATCGTGCAGAGGTTTGAGTGTCA................................................................................................................................................................................2311.001000010
..............................................................................................................................ATTCAACCTTTGGACGGTAGAG....................................................................................................................................2211.001100000
................................................................................CATCGTGCAGAGGTTTGAGTGG..................................................................................................................................................................................2211.001000010
................................................................................CATCGTGCAGAGGTTTGAGTGTCTA...............................................................................................................................................................................2511.001001000
...............................................................................................................................TTCAACCTTTGGACGGTAGTTT...................................................................................................................................2211.001100000
.............................................................................................................................CATTCAACCTTTGGACGGTTTT.....................................................................................................................................2230.331100000
droBip1
TAA-TTGTGT-TGAAGGTGAA------------G---GC---------TGTTT----TTT--TGAGAAGCTCATCAGCTCCATCGTGCAGAGGTTTGAGTGTCTATT---TTTT-AACCTT-TCGCATTCAACCTTTGGACGGTAGAGATGGTC-AGTGAAAAAGCAACCTAAAAAAG----------------------------------------------------------------------------------------------------AASizeHit CountTotal NormTotal
No Reads
dp5
----------------------------------------------------------------------------------TCCTGCAGGGGTTTGAGGGTCCTGT---GTCTTG--------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM022

Male-body		M040

Female-body		M059

Embryo		M062

Head		V043

Embryo		V051

Head		V112

Male-body		SRR902010

Ovary		SRR902011

Testis		SRR902012

CNS imaginal disc
No Reads
droWil2
TCAAAAA-ACAT------AATATTAT-------------TC----AAATACTT-----TTGCGTTAAGGTTGGCTGGCTCCATCGTGCTTAGGTTTGAGTGTCTTCGTTTGTTTTCTCTAA-TGGCATTCAACCTTGGAGCGATAGAGACGGCC-AATCGAGAAACAGCCTAAAG---------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM020

Head		M045

Female-body		V117

Male-body		V118

Embryo		V119

Head
................................................................................CATCGTGCTTAGGTTTGAGTGTC.................................................................................................................................................................................231674.0067471265311
................................................................................CATCGTGCTTAGGTTTGAGTGT..................................................................................................................................................................................221119.0011932326814
................................................................................CATCGTGCTTAGGTTTGAGTG...................................................................................................................................................................................21142.00421011282
................................................................................CATCGTGCTTAGGTTTGAGTGTCT................................................................................................................................................................................24130.00301510104
.............................................................................................................................CATTCAACCTTGGAGCGATAGA.....................................................................................................................................2219.00900090
.................................................................................ATCGTGCTTAGGTTTGAGTGTC.................................................................................................................................................................................2215.00500050
................................................................................CATCGTGCTTAGGTTTGAGTGTCC................................................................................................................................................................................2414.00420020
................................................................................CATCGTGCTTAGGTTTGAGTGTCA................................................................................................................................................................................2413.00300021
................................................................................CATCGTGCTTAGGTTTGAGTGC..................................................................................................................................................................................2213.00330000
.................................................................................ATCGTGCTTAGGTTTGAGTGT..................................................................................................................................................................................2112.00200011
....................................................................................GTGCTTAGGTTTGAGTGTC.................................................................................................................................................................................1912.00200020
................................................................................CATCGTGCTTAGGTTTGAGT....................................................................................................................................................................................2012.00200020
................................................................................CATCGTGCTTAGGTTTGAGTGG..................................................................................................................................................................................2212.00220000
.................................................................................ATCGTGCTTAGGTTTGAGTGTCT................................................................................................................................................................................2312.00200011
................................................................................CATCGTGCTTAGGTTTGAGTGTCAA...............................................................................................................................................................................2512.00200020
....................................................................................GTGCTTAGGTTTGAGTGT..................................................................................................................................................................................1811.00100001
.............................................................................................................................CATTCAACCTTGGAGCGATAG......................................................................................................................................2111.00100010
................................................................................CATCGTGCTTAGGTTTGAGTGTT.................................................................................................................................................................................2311.00100010
..........................................................................................................................TGGCATTCAACCTTGGAGCGATA.......................................................................................................................................2311.00100010
................................................................................CATCGTGCTTAGGTTTGAG.....................................................................................................................................................................................1911.00100100
........................................................................................................................A-TGGCATTCAACCTTGGAGCGATAGAA....................................................................................................................................2711.00100010
................................................................................CATCGTGCTTAGGTTTGAGTGTA.................................................................................................................................................................................2311.00101000
...............................................................................CCATCGTGCTTAGGTTTGAGTG...................................................................................................................................................................................2211.00100010
..............................................................................................................................ATTCAACCTTGGAGCGATAGA.....................................................................................................................................2111.00101000
...............................................................................CCATCGTGCTTAGGTTTGAGTGTC.................................................................................................................................................................................2411.00100010
................................................................................CATCGTGCTTAGGTTTGAGTGTCG................................................................................................................................................................................2411.00110000
droVir3
AATTA-------------AA---------GACAG----GTA--TGTATGGATC-----TC--TCATCAGTTAGCTAGCTCCATCGTGCACAGGTTTGAGTGTT-TGA---GTTTTTCCTAG-TGGCATTCAACCTTTGAACGGTAGAGATGGCC-AACTGAAAAGCGACCTAAACTAA--TAC-G-----------------------------------------------------------------------------GG---TTGGGGCAAGCCASizeHit CountTotal NormTotalM027

Male-body		M028

Head		M047

Female-body		M061

Embryo		SRR060654

Ovary		SRR060655

Testis		SRR060656

Ovary		SRR060657

Testis		SRR060658

Ovary		SRR060659

Testis		SRR060660

Ovary		SRR060661

Embryo		SRR060662

Embryo		SRR060663

Embryo		SRR060664

Male-body		SRR060665

Female-body		SRR060666

Male-body		SRR060667

Female-body		SRR060668

Male-body		SRR060669

Female-body		SRR060670

Testis		SRR060671

Male-body		SRR060672

Female-body		SRR060673

Ovary		SRR060674

Ovary		SRR060675

Ovary		SRR060676

Ovary		SRR060677

Ovary		SRR060678

Testis		SRR060679

Testis		SRR060680

Testis		SRR060681

Testis		SRR060682

Embryo		SRR060683

Testis		SRR060684

Embryo		SRR060685

Embryo		SRR060686

Embryo		SRR060687

Embryo		SRR060688

Ovary		SRR060689

Testis		SRR1106712

embryo_0-2h		SRR1106713

embryo_0-2h		SRR1106714

embryo_2-4h		SRR1106715

embryo_4-6h		SRR1106716

embryo_4-6h		SRR1106717

embryo_6-8h		SRR1106718

embryo_6-8h		SRR1106719

embryo_8-10h		SRR1106720

embryo_8-10h		SRR1106721

embryo_10-12h		SRR1106722

embryo_10-12h		SRR1106723

embryo_12-14h		SRR1106724

embryo_12-14h		SRR1106725

embryo_14-16h		SRR1106726

embryo_14-16h		SRR1106727

larvae		SRR1106728

larvae		SRR1106729

mixed whole adult body		SRR1106730

embryo_16-30h		V047

Embryo		V053

Head		V116

Male-body		GSM1528803

follicle cells		SRR2096013

Ovary_Strain_9_oxidized		SRR2096014

Ovary_Strain_160_oxidized		SRR2096026

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096038

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096050

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096055

Ovary_Min_43		SRR2096056

Ovary_Min_46		SRR2096057

Ovary_Min_50		SRR2096058

Ovary_Min_98		SRR2096059

Ovary_Min_164		SRR2096060

Ovary_Min_193		SRR2096061

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096072

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096079

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096080

embryo_0-2h from 15to16 day old nondysgenic mothers		SRR2096081

embryo_0-2h from 15to16 day old nondysgenic mothers
................................................................................CATCGTGCACAGGTTTGAGTGT..................................................................................................................................................................................221108.001080013232011000041322141102101215158020000330000000000000000001135500000000000000000
................................................................................CATCGTGCACAGGTTTGAGTGTT-................................................................................................................................................................................23190.00901011310100000001003200020000020110000010000000000000000000013440100000000100000001
................................................................................CATCGTGCACAGGTTTGAGTGTT-T...............................................................................................................................................................................24117.00170011000000000021032102200000100000000000000000000000000000000100000000000000000
.............................................................................................................................CATTCAACCTTTGAACGGTAGA.....................................................................................................................................22117.00170016000000000000010001000000000100000000000000000000000000411000000000001000000
................................................................................CATCGTGCACAGGTTTGAGTG...................................................................................................................................................................................2117.0070000000000000010000200000000000100000001000000000000000000000100000000010000000
................................................................................CATCGTGCACAGGTTTGAGT....................................................................................................................................................................................2015.0050000000000000010000001100000100100000000000000000000000000000000000000000000000
.............................................................................................................................CATTCAACCTTTGAACGG.........................................................................................................................................1814.0040000000000000000000000000000000000000000000100000000000000300000000000000000000
................................................................................CATCGTGCACAGGTTTGAG.....................................................................................................................................................................................1914.0040000000001000000000000000001010100000000000000000000000000000000000000000000000
................................................................................CATCGTGCACAGGTTTGAGTGTT-C...............................................................................................................................................................................2412.0020002000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................CCATCGTGCACAGGTTTGAGTGT..................................................................................................................................................................................2312.0020000000000000002000000000000000000000000000000000000000000000000000000000000000
................................................................................CATCGTGCACAGGTTTGAGTGTC-................................................................................................................................................................................2312.0020002000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................TTCAACCTTTGAACGGTAGAG....................................................................................................................................2111.0010000000000000000000000000000010000000000000000000000000000000000000000000000000
....................................................................................GTGCACAGGTTTGAGTGT..................................................................................................................................................................................1811.0010000000000000000001000000000000000000000000000000000000000000000000000000000000
................................................................................CATCGTGCACAGGTTTGAGTGTT-CT..............................................................................................................................................................................2511.0010000000000000000000000000000010000000000000000000000000000000000000000000000000
................................................................................CATCGTGCACAGGTTTGAGTGTT-AT..............................................................................................................................................................................2511.0010000000000000000000001000000000000000000000000000000000000000000000000000000000
................................................................................CATCGTGCACAGGTTTGAGTGTT-A...............................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000010000000000000000000
................................................................................CATCGTGCACAGGTTTGAGTGTT-AA..............................................................................................................................................................................2511.0010000000000000000001000000000000000000000000000000000000000000000000000000000000
................................................................................CATCGTGCACAGGTTTGAGTGTT-TT..............................................................................................................................................................................2511.0010000000000000000000000000000001000000000000000000000000000000000000000000000000
..........................................................TC--TCATCAGTTAGCTAGCTC........................................................................................................................................................................................................2011.0010001000000000000000000000000000000000000000000000000000000000000000000000000000
................................................................................CATCGTGCACAGGTTTGA......................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000010000000000000000000
..............................................................................................................................ATTCAACCTTTGAACGGTAGA.....................................................................................................................................2111.0010000000000000000000001000000000000000000000000000000000000000000000000000000000
........................................................................................................TGA---GTTTTTCCTAG-TGGCATTCAACCTTTGAACGGTAGA.....................................................................................................................................3911.0010000000000000000000000000000000000000000000000000000000000100000000000000000000
.............................................................................................................................CATTCAACCTTTGAACGGTAG......................................................................................................................................2111.0010000000000000010000000000000000000000000000000000000000000000000000000000000000
................................................................................CATCGTGCACAGGTTTGAGTGA..................................................................................................................................................................................2211.0010000000000000000000000000000000100000000000000000000000000000000000000000000000
...............................................................................................................................TTCAACCTTTGAACGGTAGA.....................................................................................................................................2011.0010000000000000000000000000000010000000000000000000000000000000000000000000000000
...............................................................................................................................TTCAACCTTTGAACGGTAGAGA...................................................................................................................................2211.0010000100000000000000000000000000000000000000000000000000000000000000000000000000
droMoj3
GATTCTT-AT-TTGACTCGAA-T------CTCAG----GTATCCA--------------A---TATGGGTTAGCGAGCTCCATCGTGCACAGGTTTGAGTGTT-TGT---GTTT-GGCTAG-TCGCATTCAGCCTTTGAACGGTAGAGATGGCC-AACTGAAAAGCGACCTAACTGAA--------------AGCGAATCAAG--GGAACTAGGC--------CAATAG---------------------------------G----CGAG----AATCASizeHit CountTotal NormTotalM046

Female-body		V041

Embryo		V049

Head		V056

Head		M060

Embryo		V110

Male-body
................................................................................CATCGTGCACAGGTTTGAGTGTT-................................................................................................................................................................................231467.0046781760225922
.............................................................................................................................CATTCAGCCTTTGAACGGTAGA.....................................................................................................................................221128.00128414001064
................................................................................CATCGTGCACAGGTTTGAGTGT..................................................................................................................................................................................22187.008712115121037
................................................................................CATCGTGCACAGGTTTGAGTGTC-................................................................................................................................................................................23142.00420000420
................................................................................CATCGTGCACAGGTTTGAGTGTT-T...............................................................................................................................................................................24113.0013121306
............................................A--------------A---TATGGGTTAGCGAGCTC........................................................................................................................................................................................................1918.008010070
................................................................................CATCGTGCACAGGTTTGAGTGC..................................................................................................................................................................................2217.007000070
................................................................................CATCGTGCACAGGTTTGAGTG...................................................................................................................................................................................2115.005310010
................................................................................CATCGTGCACAGGTTTGAGT....................................................................................................................................................................................2013.003110001
................................................................................CATCGTGCACAGGTTTGAGTGAC-................................................................................................................................................................................2313.003000030
.............................................................................................................................CATTCAGCCTTTGAACGGTAG......................................................................................................................................2112.002100010
...........................................CA--------------A---TATGGGTTAGCGAGCTC........................................................................................................................................................................................................2012.002010010
...............................................................................CCATCGTGCACAGGTTTGAGTGTT-................................................................................................................................................................................2411.001000010
................................................................................CATCGTGCACAGGTTTGAGTGTT-TGT---G.........................................................................................................................................................................2711.001010000
................................................................................CATCGTGCACAGGTTTGAG.....................................................................................................................................................................................1911.001000001
................................................................................CATCGTGCACAGGTTTGAGTGTT-TC..............................................................................................................................................................................2511.001100000
..............................................................................................................................ATTCAGCCTTTGAACGGTAGA.....................................................................................................................................2111.001000010
................................................................................CATCGTGCACAGGTTTGAGTGTA-................................................................................................................................................................................2311.001000010
.................................................................................ATCGTGCACAGGTTTGAGTGT..................................................................................................................................................................................2111.001100000
................................................................................CATCGTGCACAGGTTTGAGTGTT-TGT---T.........................................................................................................................................................................2711.001010000
...........................................................A---TATGGGTTAGCGAGCTC........................................................................................................................................................................................................1811.001000010
.............................................................................................................................CATTCAGCCTTTGAACGGTAGAA....................................................................................................................................2311.001000010
..............................................................................................................................ATTCAGCCTTTGAACGGTAGG.....................................................................................................................................2111.001000010
................................................................................CATCGTGCACAGGTTTGAGTGTT-TT..............................................................................................................................................................................2511.001100000
................................................................................CATCGTGCACAGGTTTGAGTGTT-C...............................................................................................................................................................................2411.001010000
..............................................................................................................................ATTCAGCCTTTGAACGGTAGAA....................................................................................................................................2211.001000010
..........................................CCA--------------A---TATGGGTTAGCGAGCTC........................................................................................................................................................................................................2111.001000010
.................................................................................ATCGTGCACAGGTTTGAGTGTT-................................................................................................................................................................................2211.001000010
.........................................TCCA--------------A---TATGGGTTAGCGAGCTC........................................................................................................................................................................................................2211.001000010
...............................................................................CCATCGTGCACAGGTTTGAGTGTC-................................................................................................................................................................................2411.001000010
....................................................................................GTGCACAGGTTTGAGTGTT-................................................................................................................................................................................1911.001010000
droGri2
TCTTGTA-GA-T------GAAATGGA-------------TT--TA--------------A---TAAAGGTTGGCGAACTCCATCGTGCACGGGTTTGAGTGTC-TGA---GT-TTGCCAAG-TGGCATTCAGCCCCTGGACGCTAGAGATGGCC-AACTGAAAAGCAACCTAAAAACA--ATCACAGT---------------------------T------A-------------------------------------------------------AASizeHit CountTotal NormTotalM041

Female-body		V109

Male-body
................................................................................CATCGTGCACGGGTTTGAGTGT..................................................................................................................................................................................22161.00612041
................................................................................CATCGTGCACGGGTTTGAGTG...................................................................................................................................................................................21155.00551144
................................................................................CATCGTGCACGGGTTTGAGT....................................................................................................................................................................................20120.0020416
................................................................................CATCGTGCACGGGTTTGAGTGTC-................................................................................................................................................................................2316.00615
.................................................................................ATCGTGCACGGGTTTGAGTG...................................................................................................................................................................................2013.00321
................................................................................CATCGTGCACGGGTTTGAGTGA..................................................................................................................................................................................2212.00202
.................................................................................ATCGTGCACGGGTTTGAGTGT..................................................................................................................................................................................2112.00220
................................................................................CATCGTGCACGGGTTTGAGTGTC-T...............................................................................................................................................................................2412.00211
................................................................................CATCGTGCACGGGTTTGAGTGTT-................................................................................................................................................................................2311.00110
.............................................................................................................................CATTCAGCCCCTGGACGCTAGA.....................................................................................................................................2211.00110
................................................................................CATCGTGCACGGGTTTGAGTGTC-A...............................................................................................................................................................................2411.00101
.................................................................................ATCGTGCACGGGTTTGAGTGTC-................................................................................................................................................................................2211.00101
...................................................................................CGTGCACGGGTTTGAGTGT..................................................................................................................................................................................1911.00110
...............................................................................CCATCGTGCACGGGTTTGAGT....................................................................................................................................................................................2111.00110

Generated: 09/08/2015 at 07:38 PM