ID:

der_51

 Coordinate:

scaffold_4929:3814045-3814112 +

 Confidence:

Known Ortholog

 Class:

Mirtron

 Genomic Locale:

intron

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-19.0 -18.7 -18.4

Flybase annnotation

intron [Dere\GG24966-in]; utr5 [utr5_plus_556]; CDS [Dere\GG24966-cds]; CDS [Dere\GG24966-cds]

No Repeatable elements found

Sense Strand Reads

CAGCTGCTCAGACAGGCGGCCGCCCAGGACAACCAGTGGCTGGACAAGAGGTTGGGGGACATTGATCTCGGAGACGGCGGTTTAACTGATCCAATCTCTCACATCACTTCCCTCACAGTGCGCGGTGCTTGTACCAGAGTCCCAGCAACATTCTGCGGCCGGACTGCT

**************************************************..(((((((...((((...(((((.((((((...))))..))..)))))...))))..)))))))...************************************************** 		Read size # Mismatch Hit Count Total Norm Total V108

head

 M055

female body

 V060

head

 V107

male body		 M057

embryo

 V040

embryo
................................................................................................TCTCACATCACTTCCCTCACAG.................................................. 22 0 1 791.00 791 405 231 66 8 46 35
..................................................GTTGGGGGACATTGATCTCGGAGA.............................................................................................. 24 0 1 297.00 297 221 5 13 41 3 14
..................................................GTTGGGGGACATTGATCTCGGAG............................................................................................... 23 0 1 205.00 205 127 6 17 53 0 2
................................................................................................TCTCACATCACTTCCCTCACA................................................... 21 0 1 124.00 124 62 41 13 3 4 1
.................................................................................................CTCACATCACTTCCCTCACAGT................................................. 22 0 1 101.00 101 71 3 10 11 5 1
..................................................GTTGGGGGACATTGATCTCGG................................................................................................. 21 0 1 33.00 33 18 0 2 13 0 0
..................................................GTTGGGGGACATTGATCTCGGA................................................................................................ 22 0 1 26.00 26 18 1 1 6 0 0
.................................................................................................CTCACATCACTTCCCTCACAG.................................................. 21 0 1 20.00 20 4 14 0 1 1 0
................................................................................................TCTCACATCACTTCCATCACAG.................................................. 22 1 1 11.00 11 11 0 0 0 0 0
................................................................................................TCTCACATCACTTCCCTCAC.................................................... 20 0 1 9.00 9 7 2 0 0 0 0
..................................................GTTGTGGGACATTGATCTCGGAGA.............................................................................................. 24 1 1 8.00 8 7 0 0 1 0 0
..................................................................................................TCACATCACTTCCCTCACAGT................................................. 21 0 1 7.00 7 4 1 1 1 0 0
.................................................................................................CTCACATCACTTCCCTCACAGA................................................. 22 1 1 7.00 7 5 2 0 0 0 0
..................................................................................................TCACATCACTTCCCTCACAG.................................................. 20 0 1 7.00 7 2 3 1 0 0 1
................................................................................................TCTCACATCACTTCCCTCACAGT................................................. 23 0 1 6.00 6 6 0 0 0 0 0
..................................................GTTTGGGGACATTGATCTCGGAGA.............................................................................................. 24 1 1 6.00 6 5 0 0 0 1 0
................................................................................................TGTCACATCACTTCCCTCACAG.................................................. 22 1 1 6.00 6 0 3 0 0 3 0
..................................................GTTGGGGGACATTGATCTCTGAGA.............................................................................................. 24 1 1 5.00 5 5 0 0 0 0 0
..................................................GTTTGGGGACATTGATCTCGGAG............................................................................................... 23 1 1 5.00 5 5 0 0 0 0 0
..................................................GTTGGGGGACATTGATCTCGGAGACG............................................................................................ 26 0 1 5.00 5 5 0 0 0 0 0
..................................................GTTGGGGGACATTGATCTCGGAA............................................................................................... 23 1 1 5.00 5 3 0 1 1 0 0
................................................................................................TCTCACATCACTTCACTCACAG.................................................. 22 1 1 4.00 4 4 0 0 0 0 0
................................................................................................ACTCACATCACTTCCCTCACAG.................................................. 22 1 1 4.00 4 0 3 1 0 0 0
................................................................................................TCTCACATCACTTCCCTAACAG.................................................. 22 1 1 4.00 4 4 0 0 0 0 0
................................................................................................TCTCACATCAATTCCCTCACAG.................................................. 22 1 1 4.00 4 2 2 0 0 0 0
................................................................................................TCTCGCATCACTTCCCTCACAG.................................................. 22 1 1 4.00 4 3 0 0 0 0 1
..................................................GTTGGGGGACATTGATCTCGGATA.............................................................................................. 24 1 1 4.00 4 4 0 0 0 0 0
................................................................................................TCTCACATAACTTCCCTCACAG.................................................. 22 1 1 4.00 4 3 1 0 0 0 0
................................................................................................TCTTACATCACTTCCCTCACAG.................................................. 22 1 1 4.00 4 0 1 0 0 3 0
................................................................................................TCTCACATCACTTCCCTCACGG.................................................. 22 1 1 4.00 4 0 2 1 0 1 0
................................................................................................TATCACATCACTTCCCTCACAG.................................................. 22 1 1 4.00 4 4 0 0 0 0 0
..................................................GTTGTGGGACATTGATCTCGGAG............................................................................................... 23 1 1 3.00 3 3 0 0 0 0 0
................................................................................................TCTCACATCACTTCCCTCA..................................................... 19 0 1 3.00 3 3 0 0 0 0 0
..................................................GTTGGGGGACATTGATCTCGGAGC.............................................................................................. 24 1 1 3.00 3 2 0 1 0 0 0
...................................................................................................CACATCACTTCCCTCACAG.................................................. 19 0 1 3.00 3 2 1 0 0 0 0
..................................................GTTGGTGGACATTGATCTCGGAGA.............................................................................................. 24 1 1 3.00 3 3 0 0 0 0 0
................................................................................................TCTCACATCACTTCCCTCACCG.................................................. 22 1 1 3.00 3 0 0 1 0 0 2
..................................................GTTGGGGGACATTGATCTCGGACA.............................................................................................. 24 1 1 3.00 3 3 0 0 0 0 0
................................................................................................GCTCACATCACTTCCCTCACAG.................................................. 22 1 1 3.00 3 0 1 0 0 0 2
................................................................................................TCTCACCTCACTTCCCTCACAG.................................................. 22 1 1 3.00 3 0 2 0 0 0 1
..................................................GTTGGGGGACATTGATCTCGGAT............................................................................................... 23 1 1 3.00 3 3 0 0 0 0 0
..................................................GTTGGTGGACATTGATCTCGGAG............................................................................................... 23 1 1 3.00 3 3 0 0 0 0 0
..................................................GTTGGGGGACATTGATCTCGGAAA.............................................................................................. 24 1 1 3.00 3 2 0 0 1 0 0
..................................................GTTGGGGGACATTGATCTCTGAG............................................................................................... 23 1 1 2.00 2 1 0 1 0 0 0
..................................................GTTGGGGGACATTGATATCGGAG............................................................................................... 23 1 1 2.00 2 2 0 0 0 0 0
................................................................................................TCTCACATCACCTCCCTCACAG.................................................. 22 1 1 2.00 2 2 0 0 0 0 0
...............................................................................................CTCTCACATCACTTCCCTCACAG.................................................. 23 0 1 2.00 2 1 0 0 0 1 0
..................................................GTTGGGGGACATTGATCTCGGAGAC............................................................................................. 25 0 1 2.00 2 2 0 0 0 0 0
..................................................GTTGGGGGACATTGATCTC................................................................................................... 19 0 1 2.00 2 2 0 0 0 0 0
................................................................................................TCTCACATTACTTCCCTCACAG.................................................. 22 1 1 2.00 2 1 1 0 0 0 0
..................................................GTTGGGGGACATTGATCTCGGAGAA............................................................................................. 25 1 1 2.00 2 1 0 0 1 0 0
................................................................................................TCTCAAATCACTTCCCTCACAG.................................................. 22 1 1 2.00 2 1 1 0 0 0 0
..................................................GTTGGGGGACATTGATCTAGGAGA.............................................................................................. 24 1 1 2.00 2 2 0 0 0 0 0
................................................................................................TCCCACATCACTTCCCTCACA................................................... 21 1 1 2.00 2 2 0 0 0 0 0
.................................................................................................ATCACATCACTTCCCTCACAGT................................................. 22 1 1 2.00 2 2 0 0 0 0 0
..................................................ATTGGGGGACATTGATCTCGGAGA.............................................................................................. 24 1 1 2.00 2 0 0 2 0 0 0
................................................................................................TCTCACATCACTTCCCTCAAAG.................................................. 22 1 1 2.00 2 1 0 1 0 0 0
..................................................GTTGGGGGACATTGATCTCGGAGT.............................................................................................. 24 1 1 2.00 2 1 0 1 0 0 0
....................................................................................................ACATCACTTCCCTCACAG.................................................. 18 0 1 2.00 2 1 1 0 0 0 0
..................................................GTTGTGGGACATTGATCTCGGA................................................................................................ 22 1 1 2.00 2 2 0 0 0 0 0
...................................................................................................CACATCACTTCCCTCACAGT................................................. 20 0 1 2.00 2 2 0 0 0 0 0
................................................................................................TCCCACATCACTTCCCTCACAG.................................................. 22 1 1 2.00 2 1 0 0 0 1 0
..................................................GTTGGGGGACATTGATCTCCGAGA.............................................................................................. 24 1 1 2.00 2 2 0 0 0 0 0
..................................................GTTGGGGGACATTGATCTCG.................................................................................................. 20 0 1 2.00 2 0 0 0 2 0 0
..................................................GTTGGGGCACATTGATCTCGGAGA.............................................................................................. 24 1 1 2.00 2 2 0 0 0 0 0
..................................................GTTGGGTGACATTGATCTCGGAGA.............................................................................................. 24 1 1 2.00 2 2 0 0 0 0 0
..................................................GTTGGGGGACATTGTTCTCGGGG............................................................................................... 23 2 1 1.00 1 0 0 1 0 0 0
.............................................................................................ATCTCTCACATCACTTCCCTCACAG.................................................. 25 0 1 1.00 1 0 1 0 0 0 0
..................................................GTTTGGGGACATTGATCTCGG................................................................................................. 21 1 1 1.00 1 1 0 0 0 0 0
..................................................GTTGGGGGACATTGATCTCGTATC.............................................................................................. 24 3 1 1.00 1 0 0 0 0 0 1
................................................................................................TCTCACATCGCTTCCCTCACAG.................................................. 22 1 1 1.00 1 0 0 1 0 0 0
................................................................................................TTTCGCGTCACTTCCCTCACAG.................................................. 22 3 1 1.00 1 0 0 1 0 0 0
................................................................................................TCTGACATCACTTCCCTCACAG.................................................. 22 1 1 1.00 1 0 1 0 0 0 0
..................................................GTTTGGTGACATTGATCTCGG................................................................................................. 21 2 1 1.00 1 1 0 0 0 0 0
..................................................GTTGGGGTACATTGATCTCGG................................................................................................. 21 1 1 1.00 1 1 0 0 0 0 0
..................................................GTTGGGGGACATTGCTCTCGG................................................................................................. 21 1 1 1.00 1 1 0 0 0 0 0
..................................................GTTGGGAGACATTGATCTCGGAGA.............................................................................................. 24 1 1 1.00 1 1 0 0 0 0 0
..................................................GTTGGGGGACATTGATCTCGGAGAT............................................................................................. 25 1 1 1.00 1 1 0 0 0 0 0
..................................................GTTGTGTGACATTGATCTCGGAG............................................................................................... 23 2 1 1.00 1 1 0 0 0 0 0
................................................................................................CCTCACATCACTTCCCTCACAG.................................................. 22 1 1 1.00 1 0 1 0 0 0 0
.................................................................................................AGCACATCACTTCCCTCACAG.................................................. 21 2 1 1.00 1 0 1 0 0 0 0
..................................................GTTGGGGGACATTGATCTCGCAGA.............................................................................................. 24 1 1 1.00 1 0 0 0 0 0 1
..................................................GTTGGTGTACATTGATCTCGG................................................................................................. 21 2 1 1.00 1 1 0 0 0 0 0
.................................................................................................CTCACATCACTTCCCTCACATT................................................. 22 1 1 1.00 1 1 0 0 0 0 0
................................................................................................TCTCACATCACTTCCCGCCCAG.................................................. 22 2 1 1.00 1 0 0 1 0 0 0
................................................................................................TCGCACATCACTTCCCTCACAG.................................................. 22 1 1 1.00 1 0 1 0 0 0 0
................................................................................................TCTCACATCACTTCCCTCGCAG.................................................. 22 1 1 1.00 1 1 0 0 0 0 0
................................................................................................TCTCACATCACTTCCCTCACAGC................................................. 23 1 1 1.00 1 1 0 0 0 0 0
..................................................GTTGGAGGACATTGATCTCGGAGA.............................................................................................. 24 1 1 1.00 1 1 0 0 0 0 0
...............................................................................................GTCTCACATCACTTCCCTCACAG.................................................. 23 1 1 1.00 1 0 1 0 0 0 0
................................................................................................TCTAACATCACTTCCATCACAG.................................................. 22 2 1 1.00 1 1 0 0 0 0 0
..................................................GTTGGGGGACATTGATCTCGGTGA.............................................................................................. 24 1 1 1.00 1 0 0 1 0 0 0
................................................................................................GCTCACATCACTTCCCTCAC.................................................... 20 1 1 1.00 1 0 0 0 0 1 0
................................................................................................TCTCACATCGCTTCCCTCGCGG.................................................. 22 3 1 1.00 1 0 0 1 0 0 0
................................................................................................TCTCATATCACTTCCCTCACAG.................................................. 22 1 1 1.00 1 0 1 0 0 0 0
..................................................GTTGGGGGACATTGATCTCGGT................................................................................................ 22 1 1 1.00 1 1 0 0 0 0 0
..................................................GTTGGGCGACATTGATCTCGGAGA.............................................................................................. 24 1 1 1.00 1 1 0 0 0 0 0
..................................................GTTGGGGGACATTGATCTCGCAG............................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0
................................................................................................TCTAACATCACTTCCCTCAC.................................................... 20 1 1 1.00 1 1 0 0 0 0 0
................................................................................................TCTCACATCACTTCCCCCACAG.................................................. 22 1 1 1.00 1 1 0 0 0 0 0
..................................................GTTAGGGGACATTGATCTCGGAGA.............................................................................................. 24 1 1 1.00 1 0 0 1 0 0 0
..................................................GTTGGAGGACATTGATCTCGG................................................................................................. 21 1 1 1.00 1 0 0 0 1 0 0
..................................................GTTGGGGGACCTTGACCTCGGAGA.............................................................................................. 24 2 1 1.00 1 1 0 0 0 0 0
..................................................................................................CCACATCACTTCCCTCACAGT................................................. 21 1 1 1.00 1 1 0 0 0 0 0
..................................................GTTGGGGGGCATTGATCTCGGAGA.............................................................................................. 24 1 1 1.00 1 1 0 0 0 0 0
..................................................GTTGGGGGACATTGATCCCGGA................................................................................................ 22 1 1 1.00 1 1 0 0 0 0 0
..................................................GTAGGTGGACATTGATCTCGGAG............................................................................................... 23 2 1 1.00 1 1 0 0 0 0 0
................................................................................................TCTCACATCACTTCCCTCACAC.................................................. 22 1 1 1.00 1 0 0 0 0 1 0
..................................................GTTGGGGGACATTGATCTTGGAG............................................................................................... 23 1 1 1.00 1 0 0 0 1 0 0
..................................................................................................TCACATCACTTCACTCACAGT................................................. 21 1 1 1.00 1 1 0 0 0 0 0
...................................................TTGGGGGACATTGATCTCGGAG............................................................................................... 22 0 1 1.00 1 1 0 0 0 0 0
................................................................................................TCTAACATCACTTCCCTCACAG.................................................. 22 1 1 1.00 1 1 0 0 0 0 0
.................................................................................................CTCACATCACTTCCCTCACA................................................... 20 0 1 1.00 1 0 1 0 0 0 0
..................................................GTTGGGGGACATTTATCTCGGA................................................................................................ 22 1 1 1.00 1 1 0 0 0 0 0
..................................................GTTGGGGTACATTGATCTCGGT................................................................................................ 22 2 1 1.00 1 1 0 0 0 0 0
..................................................GGTGGGGGACATTGATCTCGGAGA.............................................................................................. 24 1 1 1.00 1 0 1 0 0 0 0
....................................................TGGGGGACATTGATCTCGG................................................................................................. 19 0 1 1.00 1 0 1 0 0 0 0
................................................................................................TCTCACACCACTTCCCTCACAG.................................................. 22 1 1 1.00 1 1 0 0 0 0 0
..................................................GTTGGGGTACATTGATCTCGGAG............................................................................................... 23 1 1 1.00 1 0 0 0 1 0 0
................................................................................................TCTCACATCACTTCACTCACA................................................... 21 1 1 1.00 1 1 0 0 0 0 0
..................................................GTTGGGGGACATCGATCTCGGAG............................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0
.................................................................................................CTCACATCACTCCCCTCACAGT................................................. 22 1 1 1.00 1 0 0 1 0 0 0
..................................................GTTGGGGGACATTGATCTCCACG............................................................................................... 23 3 1 1.00 1 0 0 0 0 0 1
................................................................................................TCTCACATCACTTCCCTCCCAG.................................................. 22 1 1 1.00 1 0 0 1 0 0 0
..................................................GTTGGGGTACATTGATCTCGGA................................................................................................ 22 1 1 1.00 1 1 0 0 0 0 0
................................................................................................TCTCACATCACTTCCCTCACTG.................................................. 22 1 1 1.00 1 0 0 0 0 1 0
................................................................................................TCTCACATCCCTTCCCTCACAG.................................................. 22 1 1 1.00 1 0 0 0 0 0 1
................................................................................................TCCCACATCACTTCCCTCCCAG.................................................. 22 2 1 1.00 1 0 0 0 0 0 1
................................................................................................TCTCACATCACTCCCCTCACAG.................................................. 22 1 1 1.00 1 1 0 0 0 0 0
..................................................GTTGGGGGACATTGATCTCGT................................................................................................. 21 1 1 1.00 1 0 1 0 0 0 0
..................................................GTTGGGGGACACTGATCTCGGAGA.............................................................................................. 24 1 1 1.00 1 1 0 0 0 0 0
................................................................................................TCTCACATCACTTCCCTTACAG.................................................. 22 1 1 1.00 1 0 0 0 0 0 1
..................................................GTTGGGGGACATTGATCTCGTAGA.............................................................................................. 24 1 1 1.00 1 1 0 0 0 0 0
..................................................GTTGGGGGACATTGCTCTCGGAGG.............................................................................................. 24 2 1 1.00 1 0 0 0 0 0 1
..................................................GTAGGGGGACATTGATCTCGGAGA.............................................................................................. 24 1 1 1.00 1 1 0 0 0 0 0
...................................................TTGGGGGACATTGATCTCGGAGA.............................................................................................. 23 0 1 1.00 1 0 1 0 0 0 0
..................................................GTTGGGGGACATTGATCCCGGAG............................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0
................................................................................................TCTCACCTCACTTCCCTCCCAG.................................................. 22 2 1 1.00 1 0 0 1 0 0 0
................................................................................................TCTCACCTCACTTCCCTCACA................................................... 21 1 1 1.00 1 0 1 0 0 0 0
................................................................................................TCTCACATCACTTCCCTCAAA................................................... 21 1 1 1.00 1 1 0 0 0 0 0
..................................................................................................TCACATCACTTCCCTCAC.................................................... 18 0 1 1.00 1 0 1 0 0 0 0
..................................................GTTGGGGGACATTGATCTCGTAC............................................................................................... 23 2 1 1.00 1 1 0 0 0 0 0
..............................................................................................GTTCTCACATCACTTCCCTCACA................................................... 23 2 1 1.00 1 0 1 0 0 0 0
..................................................GTTGGGGAACATTGATCTCGGAGAAA............................................................................................ 26 3 1 1.00 1 1 0 0 0 0 0
..................................................GTTGGGGGACATTGATCTCCG................................................................................................. 21 1 1 1.00 1 1 0 0 0 0 0
...............................................................................GTTTAACTGATCCAATCTCTC.................................................................... 21 0 1 1.00 1 1 0 0 0 0 0
................................................................................................CCTCACATCACTTCCCTCACA................................................... 21 1 1 1.00 1 0 1 0 0 0 0
................................................................................................TCTCACATCACTTCCCTCACG................................................... 21 1 1 1.00 1 0 1 0 0 0 0
..................................................GTTGGGGGACATTGACCTCGGAG............................................................................................... 23 1 1 1.00 1 0 0 0 1 0 0
................................................................................................TCTCACATCACTTACCTCACAG.................................................. 22 1 1 1.00 1 1 0 0 0 0 0
...............................................................................................ATCTCACATCACTTCCCTCACAG.................................................. 23 1 1 1.00 1 0 1 0 0 0 0
..................................................GTTGGTGGACATTGATCTCTGAG............................................................................................... 23 2 1 1.00 1 1 0 0 0 0 0
................................................................................................TCTCACATCACTTCACTCAC.................................................... 20 1 1 1.00 1 1 0 0 0 0 0
......................................................................................................................TGCGCGGTGCTTGTACCA................................ 18 0 1 1.00 1 0 1 0 0 0 0
..................................................GTTGTGGGACATTGATCTCGGAGACG............................................................................................ 26 1 1 1.00 1 1 0 0 0 0 0
.................................................................................................CTCACATCACTTCCATCACAGT................................................. 22 1 1 1.00 1 1 0 0 0 0 0
................................................................................................TCTCACATCACTTGCCTCACA................................................... 21 1 1 1.00 1 1 0 0 0 0 0
..................................................GTTGGGGGACATTGATCTCGTAG............................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0
..................................................GTTGGGGGACATTGGTGTTGGAG............................................................................................... 23 3 1 1.00 1 0 0 0 0 0 1
.................................................................................................CTCACATCACTTCCCTCAC.................................................... 19 0 1 1.00 1 1 0 0 0 0 0
.................................................................................................CTCACATCACTTCCATCACAG.................................................. 21 1 1 1.00 1 1 0 0 0 0 0
..................................................GTTGGGGGACATTGATCTCGAGA............................................................................................... 23 3 1 1.00 1 1 0 0 0 0 0
..................................................GTTGGGGAACATTGATATCGGAGA.............................................................................................. 24 2 1 1.00 1 1 0 0 0 0 0
..................................................GTTGGGCGACATTGATCTCGGAG............................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0
..................................................GTTGGGGGACATTGATATCCGAGA.............................................................................................. 24 2 1 1.00 1 0 0 0 0 0 1
..................................................GTTGGTGGACATTGATCTCGGACA.............................................................................................. 24 2 1 1.00 1 1 0 0 0 0 0
.................................................................................................CTCACATCACTTCTCTCACAGT................................................. 22 1 1 1.00 1 1 0 0 0 0 0
..................................................GTTGGTGGACATTGATCTCGGA................................................................................................ 22 1 1 1.00 1 1 0 0 0 0 0
..................................................................................................TCACATCACTTCCCTCACACT................................................. 21 1 1 1.00 1 1 0 0 0 0 0
..................................................GTTGGGGGACATTGATCCCGGAGA.............................................................................................. 24 1 1 1.00 1 1 0 0 0 0 0
..................................................GTTGGGGTACATTGATCTCGGAGA.............................................................................................. 24 1 1 1.00 1 1 0 0 0 0 0
..................................................GTTGGGGGACATTGATCTCGGG................................................................................................ 22 1 1 1.00 1 1 0 0 0 0 0
..................................................GTTGGGTGACATTGATCTCGGAG............................................................................................... 23 1 1 1.00 1 1 0 0 0 0 0
.............................................................................CGGTTTAACTGATCCAATCT....................................................................... 20 0 1 1.00 1 1 0 0 0 0 0
..................................................GTTGGGGGACATTTATCTCGGAGA.............................................................................................. 24 1 1 1.00 1 1 0 0 0 0 0
..................................................GTTGGGGGACATTGATCTCGGCGA.............................................................................................. 24 1 1 1.00 1 0 0 0 0 0 1
..................................................GTTTGGGGACATTGATCTCTGAG............................................................................................... 23 2 1 1.00 1 1 0 0 0 0 0
..................................................GTTGGGGGACATTGATCTCGCAGACG............................................................................................ 26 1 1 1.00 1 0 0 1 0 0 0
................................................................................................TCTCTCATCACTTCACTCACAG.................................................. 22 2 1 1.00 1 0 0 1 0 0 0
..................................................GTTGGGAGACATTGATCTCGGAG............................................................................................... 23 1 1 1.00 1 0 0 1 0 0 0
..................................................ATTGGGGGACCTTGATCTCGGAGC.............................................................................................. 24 3 1 1.00 1 0 0 0 0 0 1
................................................................................................TCTCACATCACTTCCCCCACAT.................................................. 22 2 1 1.00 1 0 0 0 0 0 1
................................................................................................TCTGGCATCACTTCCCTCACAG.................................................. 22 2 1 1.00 1 1 0 0 0 0 0
..................................................GTTGGGGGAAATTGATCTCGGAC............................................................................................... 23 2 1 1.00 1 1 0 0 0 0 0
................................................................................................TCTCACCTCACTTCCCTCAACG.................................................. 22 3 1 1.00 1 0 0 1 0 0 0
.................................................................................................CGCACATCACTTCCCTCACAGC................................................. 22 2 1 1.00 1 0 0 0 0 1 0
..................................................GTTGTGGGACATTTATCTCGGAG............................................................................................... 23 2 1 1.00 1 1 0 0 0 0 0
................................................................................................TCTCACATCACTTCGCTCACAG.................................................. 22 1 1 1.00 1 1 0 0 0 0 0
..................................................TTTTGGGGACATTGATCTCGGAGA.............................................................................................. 24 2 1 1.00 1 1 0 0 0 0 0
................................................................................................TCTCGCATCACTTCCCTCACA................................................... 21 1 1 1.00 1 1 0 0 0 0 0
.................................................GTTTGGGGGACATTGATCTCGGA................................................................................................ 23 1 1 1.00 1 1 0 0 0 0 0
................................................................................................................................................GCAACATTCTGCGGCCGGA..... 19 0 1 1.00 1 0 0 0 1 0 0
................................................................................................TATCACATCAACTCCCTCACAG.................................................. 22 3 2 0.50 1 1 0 0 0 0 0
................................................................................................TCTTTCATCACTTCCCTCACTG.................................................. 22 3 2 0.50 1 0 0 0 0 0 1
......CTCAGTCAAGCGTCCGCCCA.............................................................................................................................................. 20 3 6 0.17 1 0 0 0 0 0 1

Anti-sense strand reads

GTCGACGAGTCTGTCCGCCGGCGGGTCCTGTTGGTCACCGACCTGTTCTCCAACCCCCTGTAACTAGAGCCTCTGCCGCCAAATTGACTAGGTTAGAGAGTGTAGTGAAGGGAGTGTCACGCGCCACGAACATGGTCTCAGGGTCGTTGTAAGACGCCGGCCTGACGA

**************************************************..(((((((...((((...(((((.((((((...))))..))..)))))...))))..)))))))...************************************************** 		Read size # Mismatch Hit Count Total Norm Total V107

male body		 GSM1528801

follicle cells		 M055

female body

 V108

head
................................................................................................GGAGTGTAGTGGAGGGAGT..................................................... 19 2 1 1.00 1 1 0 0 0
..............................................................................................AGGGAGTGTAGTGGAGGGAGTTT................................................... 23 3 1 1.00 1 1 0 0 0
....................................................................................................TGTGGTGAGGGGAGAGTCACG............................................... 21 3 4 0.50 2 0 2 0 0
................................................................................................................................................CGTAGTAAGACGGTGGCCTG.... 20 3 4 0.25 1 0 0 1 0
..................CGGCGGGTCCTGTGGGGC.................................................................................................................................... 18 2 7 0.14 1 0 0 0 1
......................................................................................................TGGTGAGGGGAGAGTCACG............................................... 19 3 20 0.05 1 0 1 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Type Alignment
droEre2 scaffold_4929:3813995-3814163 + der_51 confident CAGCTGCTCAGACAGGCGGCCGCCCAGGACAACCAGTGGCTGGACAAGAGGT-TGGGGGAC---------------------------------------------------------ATTGATCTCGGAGAC------G----------------------G----CGGTTTA----ACTGATCCAATC---------TCTCACATCACTT--CCCTCACAGTGCGCGGTGCTTGTACCAGAGTCCCAGCAACATTCTGCGGCCGGACTGCTT
droYak3 2L:3769256-3769424 + dya_170 confident CAGCTGCTCCGACAAGCGGCCTCCCAGGACAACCAGTGGCTGGACAAGAGGT-TGGGGGAC---------------------------------------------------------ATTGATCTCGGAGAC------G----------------------G----CGGTTTA----ACTGATCCATTC---------TCTCACATCACTT--CCCTCACAGTGCGCGATGTTTGTACCAGACGCCCAGCAACATTCAGCGGCCCGACTGCTT
droSec2 scaffold_5:1870650-1870818 + dse_75 confident CAGCTGCTTAGACAAGCGGCCTCCCAGGACAACCAGTGGCTGGACAAGAGGT-TGGGGGAC---------------------------------------------------------ATTGATCTCTGAGAC------G----------------------G----CGGTTTA----ACTGATCCATTC---------TCTCACATCACTT--CCCTCACAGTGCGCGGTGCTTGTACCAGAGTCCCAGCAACATTCAGCGGCCCGACTGCTT
droSim2 2l:3620502-3620670 + dsi_282 confident CAGCTGCTCAGACAAGCGGCCTCCCAGGACAACCAGTGGCTGGACAAGAGGT-TGGGGGAC---------------------------------------------------------ATTGATCTCGGAGAC------G----------------------G----CGGTTTA----ACTGATCCATTC---------TCTCACATCACTT--CCCTCACAGTGCGCGGTGCTTGTACCAGAGTCCCAGCAACATTCAGCGGCCCGACTGCTT
dm3 chr2L:3767571-3767739 + dme-mir-1004 Known_mirbase CAGCTGCTCAGACAAGCGGCCTCCCAGGACAACCAGTGGCTGGACAAAAGGT-TGGGGGAC---------------------------------------------------------ATTGATCTCGGAGAC------G----------------------G----CGGTTTA----ACTGATCCATTC---------TCTCACATCACTT--CCCTCACAGTGCACGGTGCTTGTACCAGAGTCCCAGCAACATTCAGCGGCCCGACTGCTT
droEug1 scf7180000409554:2307455-2307628 - CAGCTGCTCCGACAAGCAGCCTCGCAGGACAACCAGTGGCTGGACAAAAGGT-TGGGGGAC---------------------------------------------------------ACTGATCTCGGAGAT------CGCTGAT----------------C----CGA-TTT----ACTGATCTATTC---------TCTCACATCACTT--CCCTCACAGCGCGCGGTGCCTGTACCAAAGCCCCACTAACATTCAGAGGCCCGACTGCTT
droBia1 scf7180000302261:2154075-2154247 + CAGCTGCTCAGACAAGCGGCCTCCCAGGACAACCAGTGGCTGGACAAGAGGT-TGGGGGAC---------------------------------------------------------ACTGATCTCGGAGACTGATC--------C---------------A----TT-CCTT----ACTGATCCACTC---------TCTCACATCACTT--CCCTCACAGTGCGCGGTGCTTGTACCAGAGCCCCACCAACATTCAGAGGCCCGATTGCTT
droTak1 scf7180000415709:76382-76555 - CAGCTGCTCAGGCAGGCCGCCTCGCAGGACAACCAGTGGCTGGACAAAAGGT-TGGGGGAC---------------------------------------------------------ACTGATCTCGGAGACTGATC--------C--------------------CGATCTT---TACTGATCCATTC---------TCTCACATCACTT--CCCTCACAGTGCGCGGTGCTTGTACCAGAGTCCCACCAACATTCAGAGGCCCGATTGCTT
droEle1 scf7180000490728:519610-519784 + CAACTCCTGCGGCAGGCGGCCTCGCAGGACAACCAGTGGCTGGACAAAAGGT-GCGGTTTC---------------------------------------------------------ATTGATCTTGGAGACCTTTTCG----------------------A----CTATCCT----AGTGATCCATTC---------TCTCACATCACTT--CCCTTATAGCGCGAGGTGCCTGTACCAGAGTCCCACCAACATTCAGAGGCCCGACTGCTT
droRho1 scf7180000777886:5813-5981 - CAACTGCTGAGACAAGCGGCCTCGCAGGACAACCAGTGGCTGGACAAAAGGT-TGGGGGAC---------------------------------------------------------ATTGATCTTGGAGAC------G----------------------G----CTGGCTT----ACTGATCCATTC---------TCTCACATCACTT--CCCTCACAGCGCGCGGTGCCTGTACCAGAGTCCCACCAACATTCAGAGGCCCGACTGCTT
droFic1 scf7180000453924:1748568-1748741 + CAGCTGCTGCGGCAGGCCGCCTCGCAGGACAACCAGTGGCTGGACAAGAGGT-TGGGGGAC---------------------------------------------------------ACTGATCTCGGAGAATCGCT--------C---------------A----TTCGCTC----ACTGATCCATTC---------TCTCACATCTCTT--CCCTCACAGCGCGCGGGGCCTGTACCAGAGCCCGGGGAGCATCCAGAGGCCCGACTGCTT
droKik1 scf7180000302401:685550-685722 + CAGCTGCTGAGGCAGGCGGCCGCCCAGGACAACCAGTGGCTCGACAAGAGGT--GAAGGAC---------------------------------------------------------ACTGATCTTAGAGAAAGGCA------A-CA--------------G----CAAATTA----TATG--TAATTC---------TCTCACATCACTT--CCTTCACAGTGCGAGGTGCTTGTACCAGAGTCCCAGCAACATTCAGAGGCCCGATTGCTT
droAna3 scaffold_12916:5837580-5837775 + dan_549 CAGCTCCTGCGGCAGGCCGCCTCCCAGGACAACCAGTGGCTGGACAAGAGGT-GAGATAACACGTTCTAACCAACTGATATGAAACTACGAATGTTTTTATCGCTGTCG----ATTCGAACGATCTCTCATAT------AAC-----------------------------------------------------------------CGTAC--CTATTACAGTGCGCGGTGTCTGTACCAGAGCCCCACCAGCATCCAAAGGCCCGATTGCTT
droBip1 scf7180000396568:1004339-1004498 - CAACTTCTAAGACAGGCCGCTGCCCAGGACAACCAGTGGCTGGACAAGAGGT-ACGATCGAA------------------------------T----------CTCTCGTATAATTCAAACGATCTCTCATAT------AAC-----------------------------------------------------------------CGTCT--CTCCTACAGTGCCCGGTGTTTGTATCAGAGCCCCACCAGCATCCAAAGGCCCGATTGCTT
dp5 4_group3:4962002-4962181 - dps-mir-2559 Known_mirbase AATCTGCTGCGCCAGGCTGCGTCCCAGGATAACCAGTGGCTGGACAAGAGGTGTGTGGGAT---------------------------------------------------------ACTGATTTTAGAGAAAAAAA------AA-A-----CC-------A----TTAACGT----GAGGCTTCG-TT---------TCTCACATCATTTTCCCCTCACAGTGCCCGGTGCCTGTACCAGGCTCCGACCAGCATTCAGAGGCCTGATTGCTT
droPer2 scaffold_1:6454646-6454823 - dpe_108 confident AATCTGCTGCGCCAGGCTGCCTCCCAGGATAACCAGTGGCTGGACAAGAGGTGTGTGGGAT---------------------------------------------------------ACTGATTTTAGAGAAAAATA------A--------CC-------A----TTAACGT----GAGGCTTCG-TT---------TCTCACATCATTTTCCCCTCACAGTGCCCGGTGCCTGTACCAGGCTCCGACCAGCATTCAGAGGCCTGATTGCTT
droWil2 scf2_1100000004521:9298727-9298904 - AATCTTTTGCGTCAGGCGGCTTCACAGGATAATCAATGGTTGGATAAAAGGT--GGGGTAC---------------------------------------------------------AACAACAACAAAAAT-----------------------------A----CGAATAT----AATGGTAAACTCTCTCTCTCATCTCTTATCATTTTCTCCTCACAGTGCGCGTTCACTTTATCAGAGTCCATCGAGCATAATTCGGCCCGATTGCTT
droVir3 scaffold_12963:14941224-14941399 - AATTTGCTGCGCCAGGCGGCCACACAGGATAATCAGTGGCTGGACAAAAGGT-TGGGGCAC---------------------------------------------------------ATTGATCTTCAAGAAACTCA--------CA--------------G----CCAGCTC----ATTTACTCACTCTCTC-----TCTCTT--C-TCT--CCCTCACAGTGCCCGCTGTCTGTACCAGAGCCCAGGCAACATTGTGCGACCCGATTGCTT
droMoj3 scaffold_6500:17898415-17898581 - AATTTGCTGCGCCAAGCGGCCAATCAGGATAATCAGTGGCTGGACAAGAGGT-A----------------------------------------------------------------ATTGATCACTCCTAT------CTCTGTC----------------T----CTCTTTCTCTTTCT----GACTC---------TCTCCCA-CTCTT--TATTTGTAGTGCTCGCTGCCTGTACCAGAGCCCGGGCAGCATTGTGCGACCCGATTGCTT
droGri2 scaffold_15126:4437332-4437533 + AACTTGCTGCGCCAAGCGGCCACTCAAGACAATCAGTGGCTGGACAAAAGGT-AGGAGAGCAC-------------------------------------------------------ATTGATCTTGAAGAAACTTG--------CAGAAAACTCTCTAATACTCTCACTCCATTTCTCT----AACTCTCCCTCTC-TCTTATTTAACTT--CA-TTTTAGTGCGCGCTGTTTATATCAGAGCCCCGCCAGCATTGTGCGGCCCGATTGCTT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droEre2
CAGCTGCTCAGACAGGCGGCCGCCCAGGACAACCAGTGGCTGGACAAGAGGT-TGGGGGAC---------------------------------------------------------ATTGATCTCGGAGAC------G----------------------G----CGGTTTA----ACTGATCCAATC---------TCTCACATCACTT--CCCTCACAGTGCGCGGTGCTTGTACCAGAGTCCCAGCAACATTCTGCGGCCGGACTGCTTSizeHit CountTotal NormTotalM055

Female-body		M057

Embryo		V060

Head		V040

Embryo		V107

Male-body		V108

Head		GSM1528801

follicle cells
.......................................................................................................................................................................................................TCTCACATCACTT--CCCTCACAG...................................................221791.0079123146663584050
..................................................GT-TGGGGGAC---------------------------------------------------------ATTGATCTCGGAGA..............................................................................................................................................241297.00297531314412210
..................................................GT-TGGGGGAC---------------------------------------------------------ATTGATCTCGGAG...............................................................................................................................................231205.0020560172531270
.......................................................................................................................................................................................................TCTCACATCACTT--CCCTCACA....................................................211124.001244141313620
........................................................................................................................................................................................................CTCACATCACTT--CCCTCACAGT..................................................221101.001013510111710
..................................................GT-TGGGGGAC---------------------------------------------------------ATTGATCTCGG.................................................................................................................................................21133.0033002013180
..................................................GT-TGGGGGAC---------------------------------------------------------ATTGATCTCGGA................................................................................................................................................22126.002610106180
........................................................................................................................................................................................................CTCACATCACTT--CCCTCACAG...................................................21120.002014100140
.......................................................................................................................................................................................................TCTCACATCACTT--CCCTCAC.....................................................2019.0092000070
.........................................................................................................................................................................................................TCACATCACTT--CCCTCACAGT..................................................2117.0071010140
........................................................................................................................................................................................................CTCACATCACTT--CCCTCACAGA..................................................2217.0072000050
.........................................................................................................................................................................................................TCACATCACTT--CCCTCACAG...................................................2017.0073011020
.......................................................................................................................................................................................................TCTCACATCACTT--CCCTCACAGT..................................................2316.0060000060
..................................................GT-TGGGGGAC---------------------------------------------------------ATTGATCTCGGAGAC------G----------------------................................................................................................................2615.0050000050
..................................................GT-TGGGGGAC---------------------------------------------------------ATTGATCTCGGAA...............................................................................................................................................2315.0050010130
.......................................................................................................................................................................................................TCTCACATCACTT--CCCTCA......................................................1913.0030000030
..................................................GT-TGGGGGAC---------------------------------------------------------ATTGATCTCGGAGC..............................................................................................................................................2413.0030010020
..........................................................................................................................................................................................................CACATCACTT--CCCTCACAG...................................................1913.0031000020
..................................................GT-TGGGGGAC---------------------------------------------------------ATTGATCTCGGAT...............................................................................................................................................2313.0030000030
.............................................................................................................................................................................................C---------TCTCACATCACTT--CCCTCACAG...................................................2312.0020100010
..................................................GT-TGGGGGAC---------------------------------------------------------ATTGATCTCGGAGAC------.......................................................................................................................................2512.0020000020
..................................................GT-TGGGGGAC---------------------------------------------------------ATTGATCTC...................................................................................................................................................1912.0020000020
..................................................GT-TGGGGGAC---------------------------------------------------------ATTGATCTCGGAGAA------.......................................................................................................................................2512.0020000110
..................................................GT-TGGGGGAC---------------------------------------------------------ATTGATCTCGGAGT..............................................................................................................................................2412.0020010010
...........................................................................................................................................................................................................ACATCACTT--CCCTCACAG...................................................1812.0021000010
..........................................................................................................................................................................................................CACATCACTT--CCCTCACAGT..................................................2012.0020000020
..................................................GT-TGGGGGAC---------------------------------------------------------ATTGATCTCG..................................................................................................................................................2012.0020000200
...........................................................................................................................................................................................ATC---------TCTCACATCACTT--CCCTCACAG...................................................2511.0011000000
..................................................GT-TGGGGGAC---------------------------------------------------------ATTGATCTCGGAGAT------.......................................................................................................................................2511.0010000010
.......................................................................................................................................................................................................TCTCACATCACTT--CCCTCACAGC..................................................2311.0010000010
..................................................GT-TGGGGGAC---------------------------------------------------------ATTGATCTCGGT................................................................................................................................................2211.0010000010
.......................................................................................................................................................................................................TCTCACATCACTT--CCCTCACAC...................................................2211.0010100000
...................................................T-TGGGGGAC---------------------------------------------------------ATTGATCTCGGAG...............................................................................................................................................2211.0010000010
........................................................................................................................................................................................................CTCACATCACTT--CCCTCACA....................................................2011.0011000000
.....................................................TGGGGGAC---------------------------------------------------------ATTGATCTCGG.................................................................................................................................................1911.0011000000
..................................................GT-TGGGGGAC---------------------------------------------------------ATTGATCTCGT.................................................................................................................................................2111.0011000000
...................................................T-TGGGGGAC---------------------------------------------------------ATTGATCTCGGAGA..............................................................................................................................................2311.0011000000
.........................................................................................................................................................................................................TCACATCACTT--CCCTCAC.....................................................1811.0011000000
.........................................................................................................................................................................GTTTA----ACTGATCCAATC---------TCTC.......................................................................2111.0010000010
.......................................................................................................................................................................................................TCTCACATCACTT--CCCTCACG....................................................2111.0011000000
...............................................................................................................................................................................................................................TGCGCGGTGCTTGTACCA.................................1811.0011000000
........................................................................................................................................................................................................CTCACATCACTT--CCCTCAC.....................................................1911.0010000010
..................................................GT-TGGGGGAC---------------------------------------------------------ATTGATCTCGAGA...............................................................................................................................................2311.0010000010
..................................................GT-TGGGGGAC---------------------------------------------------------ATTGATCTCGGG................................................................................................................................................2211.0010000010
.......................................................................................................................................................................CGGTTTA----ACTGATCCAATC---------T..........................................................................2011.0010000010
.........................................................................................................................................................................................................................................................GCAACATTCTGCGGCCGGA......1911.0010000100
droYak3
CAGCTGCTCCGACAAGCGGCCTCCCAGGACAACCAGTGGCTGGACAAGAGGT-TGGGGGAC---------------------------------------------------------ATTGATCTCGGAGAC------G----------------------G----CGGTTTA----ACTGATCCATTC---------TCTCACATCACTT--CCCTCACAGTGCGCGATGTTTGTACCAGACGCCCAGCAACATTCAGCGGCCCGACTGCTTSizeHit CountTotal NormTotalM026

Head		M043

Female-body		M056

Embryo		V046

Embryo		V052

Head		V058

Head		V120

Male-body		SRR1275488

Male larvae		SRR1275486

Male prepupae		SRR1275484

Male prepupae		GSM1528802

follicle cells
.......................................................................................................................................................................................................TCTCACATCACTT--CCCTCACAG...................................................221781.007813523002736263730000
..................................................GT-TGGGGGAC---------------------------------------------------------ATTGATCTCGGAGA..............................................................................................................................................241402.004023313261181580000
.......................................................................................................................................................................................................TCTCACATCACTT--CCCTCACA....................................................211109.0010938485011610000
..................................................GT-TGGGGGAC---------------------------------------------------------ATTGATCTCGGAG...............................................................................................................................................231107.00107264302438101010
........................................................................................................................................................................................................CTCACATCACTT--CCCTCACAGT..................................................22136.0036292281210000
..................................................GT-TGGGGGAC---------------------------------------------------------ATTGATCTCGGAGG..............................................................................................................................................24135.0035350000000000
..................................................GT-TGGGGGAC---------------------------------------------------------ATTGATCTCGGA................................................................................................................................................22129.002984013850000
.......................................................................................................................................................................................................TCTCACATCACTT--CCCTCAC.....................................................20122.002288003300000
........................................................................................................................................................................................................CTCACATCACTT--CCCTCACAG...................................................21119.0019118000000000
..................................................GT-TGGGGGAC---------------------------------------------------------ATTGATCTCGGAGAA------.......................................................................................................................................25116.0016140011000000
..................................................GT-TGGGGGAC---------------------------------------------------------ATTGATCTCGGAGC..............................................................................................................................................24111.001190100100000
........................................................................................................................................................................................................CTCACATCACTT--CCCTCACA....................................................2018.00817000000000
.......................................................................................................................................................................................................TCTCACATCACTT--CCCTCACAC...................................................2218.00871000000000
..................................................GT-TGGGGGAC---------------------------------------------------------ATTGATCTCGGAGAC------G----------------------................................................................................................................2617.00760000100000
.........................................................................................................................................................................................................TCACATCACTT--CCCTCACAGT..................................................2116.00602002200000
..................................................GT-TGGGGGAC---------------------------------------------------------ATTGATCTCGG.................................................................................................................................................2115.00503002000000
.........................................................................................................................................................................................................TCACATCACTT--CCCTCACAG...................................................2015.00504001000000
.......................................................................................................................................................................................................TCTCACATCACTT--CCCTCACAGT..................................................2314.00411011000000
........................................................................................................................................................................................................CTCACATCACTT--CCCTCACAGA..................................................2214.00404000000000
..................................................GT-TGGGGGAC---------------------------------------------------------ATTGATCTCGGAGAC------.......................................................................................................................................2513.00320010000000
.......................................................................................................................................................................................................TCTCACATCACTT--CCCTCA......................................................1913.00330000000000
..........................................................................................................................................................................................................CACATCACTT--CCCTCACAG...................................................1913.00303000000000
.......................................................................................................................................................................................................TCTCACATCACTT--CCCTCACAGA..................................................2312.00201000100000
..................................................GT-TGGGGGAC---------------------------------------------------------ATTGATCTCGGG................................................................................................................................................2212.00220000000000
.........................................................................................................................................................................................................TCACATCACTT--CCCTCACA....................................................1912.00201001000000
...........................................................................................................................................................................................................ACATCACTT--CCCTCACAG...................................................1812.00202000000000
..........................................................................................................................................................................................................CACATCACTT--CCCTCACAGT..................................................2012.00202000000000
..................................................GT-TGGGGGAC---------------------------------------------------------ATTGATCTC...................................................................................................................................................1912.00220000000000
...................................................T-TGGGGGAC---------------------------------------------------------ATTGATCTCGGAGA..............................................................................................................................................2312.00202000000000
..................................................GT-TGGGGGAC---------------------------------------------------------ATTGATCTCGGAC...............................................................................................................................................2312.00210100000000
.......................................................GGGGAC---------------------------------------------------------ATTGATCTCGGAGA..............................................................................................................................................2011.00110000000000
...................................................T-TGGGGGAC---------------------------------------------------------ATTGATCTCGGAGG..............................................................................................................................................2311.00110000000000
.......................................................................................................................................................................................................TCTCACATCACTT--CCCTCACC....................................................2111.00110000000000
..........................................................................................................................................................................................................CACATCACTT--CCCTCACA....................................................1811.00101000000000
..................................................GT-TGGGGGAC---------------------------------------------------------ATTGATCTCG..................................................................................................................................................2011.00100000100000
..................................................GT-TGGGGGAC---------------------------------------------------------ATTGATCTCGGAT...............................................................................................................................................2311.00100000100000
.............................................................................................................................................................................................C---------TCTCACATCACTT--CCCTCACAG...................................................2311.00101000000000
..................................................GT-TGGGGGAC---------------------------------------------------------ATTGATCT....................................................................................................................................................1811.00100001000000
........................................................................................................................................................................................................CTCACATCACTT--CCCTCACAGG..................................................2211.00110000000000
..................................................GT-TGGGGGAC---------------------------------------------------------ATTGATCTCGGAGT..............................................................................................................................................2411.00110000000000
...................................................T-TGGGGGAC---------------------------------------------------------ATTGATCTCGGA................................................................................................................................................2111.00101000000000
.......................................................................................................................................................................................................TCTCACATCACTT--CCCTCACAA...................................................2211.00110000000000
........................................................GGGAC---------------------------------------------------------ATTGATCTCGGAG...............................................................................................................................................1811.00110000000000
droSec2
CAGCTGCTTAGACAAGCGGCCTCCCAGGACAACCAGTGGCTGGACAAGAGGT-TGGGGGAC---------------------------------------------------------ATTGATCTCTGAGAC------G----------------------G----CGGTTTA----ACTGATCCATTC---------TCTCACATCACTT--CCCTCACAGTGCGCGGTGCTTGTACCAGAGTCCCAGCAACATTCAGCGGCCCGACTGCTTSizeHit CountTotal NormTotalM054

Female-body		V113

Male-body		V114

Embryo		V115

Head
..................................................GT-TGGGGGAC---------------------------------------------------------ATTGATCTCTGAG...............................................................................................................................................231124.001244103674
.......................................................................................................................................................................................................TCTCACATCACTT--CCCTCACAG...................................................221119.001193521666
..................................................GT-TGGGGGAC---------------------------------------------------------ATTGATCTCTGAGA..............................................................................................................................................24155.0055212527
.......................................................................................................................................................................................................TCTCACATCACTT--CCCTCACA....................................................21127.002780118
........................................................................................................................................................................................................CTCACATCACTT--CCCTCACAGT..................................................22123.0023001211
.........................................................................................................................................................................................................TCACATCACTT--CCCTCACAGT..................................................21119.001910216
..................................................GT-TGGGGGAC---------------------------------------------------------ATTGATCTCTGA................................................................................................................................................2218.0081025
.......................................................................................................................................................................................................TCTCACATCACTT--CCCTCACAGT..................................................2314.0040004
..................................................GT-TGGGGGAC---------------------------------------------------------ATTGATCTCTGAGAC------G----------------------................................................................................................................2614.0040031
..................................................GT-TGGGGGAC---------------------------------------------------------ATTGATCTCTG.................................................................................................................................................2114.0040004
........................................................................................................................................................................................................CTCACATCACTT--CCCTCACAG...................................................2113.0033000
.......................................................................................................................................................................................................TCTCACATCACTT--CCCTCAC.....................................................2013.0031002
..................................................GT-TGGGGGAC---------------------------------------------------------ATTGATCTCT..................................................................................................................................................2012.0020002
..................................................GT-TGGGGGAC---------------------------------------------------------ATTGATCTCTGAGAA------.......................................................................................................................................2512.0020002
........................................................................................................................................................................................................CTCACATCACTT--CCCTCACAGA..................................................2212.0021001
.........................................................................................................................................................................................................TCACATCACTT--CCCTCACAGA..................................................2112.0021100
.........................................................GGAC---------------------------------------------------------ATTGATCTCTGAGAC------G----------------------G----C..........................................................................................................2211.0010100
...................................................T-TGGGGGAC---------------------------------------------------------ATTGATCTCTGAGA..............................................................................................................................................2311.0010100
..........................................................................................................................................................................................................CACATCACTT--CCCTCACAG...................................................1911.0010001
...................................................................................................................................AC------G----------------------G----CGGTTTA----ACTGATCCATTC---------T..........................................................................2411.0010001
...................................................T-TGGGGGAC---------------------------------------------------------ATTGATCTCTGAG...............................................................................................................................................2211.0011000
.......................................................................................................................................................................................................TCTCACATCACTT--CCCTCA......................................................1911.0011000
..................................................GT-TGGGGGAC---------------------------------------------------------ATTGATCTCTGAGAT------T----------------------................................................................................................................2611.0010001
........................................................................................................................................................................................................CTCACATCACTT--CCCTCACAGC..................................................2211.0010001
...........................................................................................................................................................................................................ACATCACTT--CCCTCACAGT..................................................1911.0010001
....................................................................................................................................C------G----------------------G----CGGTTTA----ACTGATCCATTC---------TCT........................................................................2511.0011000
.........................................................................................................................................................................................................TCACATCACTT--CCCTCACAG...................................................2011.0011000
........................................................................................................................................................................................................CTCACATCACTT--CCCTCACA....................................................2011.0010001
..................................................GT-TGGGGGAC---------------------------------------------------------ATTGATCTCTGAGC..............................................................................................................................................2411.0010001
..................................................GT-TGGGGGAC---------------------------------------------------------ATTGATCTCTGAGAC------.......................................................................................................................................2511.0010001
..................................................GT-TGGGGGAC---------------------------------------------------------ATTGATCTC...................................................................................................................................................1911.0010001
droSim2
CAGCTGCTCAGACAAGCGGCCTCCCAGGACAACCAGTGGCTGGACAAGAGGT-TGGGGGAC---------------------------------------------------------ATTGATCTCGGAGAC------G----------------------G----CGGTTTA----ACTGATCCATTC---------TCTCACATCACTT--CCCTCACAGTGCGCGGTGCTTGTACCAGAGTCCCAGCAACATTCAGCGGCCCGACTGCTTSizeHit CountTotal NormTotalM023

Head		M024

Male-body		M025

Embryo		M053

Female-body		O001

Testis		O002

Head		SRR553485

Ovary		SRR553486

Ovary		SRR553487

Ovary		SRR553488

Ovary		SRR618934

Ovary		V044

Embryo		SRR902008

Ovary		SRR902009

Testis		SRR1275487

Male larvae		SRR1275485

Male prepupae		SRR1275483

Male prepupae
.......................................................................................................................................................................................................TCTCACATCACTT--CCCTCACAG...................................................2211695.0016959942093480473002202601000
..................................................GT-TGGGGGAC---------------------------------------------------------ATTGATCTCGGAGA..............................................................................................................................................241737.0073744455213002003101603000
.......................................................................................................................................................................................................TCTCACATCACTT--CCCTCACA....................................................211180.0018097210156200200100000
..................................................GT-TGGGGGAC---------------------------------------------------------ATTGATCTCGGAG...............................................................................................................................................231151.00151107184101010000306100
..................................................GT-TGGGGGAC---------------------------------------------------------ATTGATCTCGGA................................................................................................................................................221134.001349222812300000005001
..................................................GT-TGGGGGAC---------------------------------------------------------ATTGATCTCGGAGG..............................................................................................................................................24191.00914693600000000000000
.......................................................................................................................................................................................................TCTCACATCACTT--CCCTCAC.....................................................20168.00689000154400000000000
.......................................................................................................................................................................................................TCTCACATCACTT--CCCTCA......................................................19140.0040500082700000000000
.......................................................................................................................................................................................................TCTCACATCACTT--CCCTC.......................................................18140.0040000073300000000000
........................................................................................................................................................................................................CTCACATCACTT--CCCTCACAG...................................................21129.00291000021700000000000
........................................................................................................................................................................................................CTCACATCACTT--CCCTCACAGT..................................................22128.0028610051300000300000
..................................................GT-TGGGGGAC---------------------------------------------------------ATTGATCTCGGAGAA------.......................................................................................................................................25125.0025212100000000100000
.......................................................................................................................................................................................................TCTCACATCACTT--CCCTCACAC...................................................22120.0020190100000000000000
........................................................................................................................................................................................................CTCACATCACTT--CCCTCACAGA..................................................22116.0016141100000000000000
..................................................GT-TGGGGGAC---------------------------------------------------------ATTGATCTCGGG................................................................................................................................................22111.0011101000000000000000
..................................................GT-TGGGGGAC---------------------------------------------------------ATTGATCTCGGAGAC------G----------------------................................................................................................................26110.001030401200000000000
..................................................GT-TGGGGGAC---------------------------------------------------------ATTGATCT....................................................................................................................................................18110.001000003700000000000
..................................................GT-TGGGGGAC---------------------------------------------------------ATTGATCTCGGAA...............................................................................................................................................2319.00962000000000001000
..................................................GT-TGGGGGAC---------------------------------------------------------ATTGATCTC...................................................................................................................................................1919.00940000500000000000
..................................................GT-TGGGGGAC---------------------------------------------------------ATTGATCTCGGAGC..............................................................................................................................................2419.00951300000000000000
..................................................GT-TGGGGGAC---------------------------------------------------------ATTGATCTCGGAGAC------.......................................................................................................................................2518.00843000100000000000
........................................................................................................................................................................................................CTCACATCACTT--CCCTCAC.....................................................1918.00800002600000000000
..................................................GT-TGGGGGAC---------------------------------------------------------ATTGATCTCGG.................................................................................................................................................2118.00830010300010000000
........................................................................................................................................................................................................CTCACATCACTT--CCCTCACA....................................................2017.00700010600000000000
..................................................GT-TGGGGGAC---------------------------------------------------------ATTGATCTCGGAC...............................................................................................................................................2316.00651000000000000000
........................................................................................................................................................................................................CTCACATCACTT--CCCTCA......................................................1816.00600000600000000000
.......................................................................................................................................................................................................TCTCACATCACTT--CCCTCACAGT..................................................2316.00620002200000000000
.........................................................................................................................................................................................................TCACATCACTT--CCCTCACAGT..................................................2115.00510001200000000001
..................................................GT-TGGGGGAC---------------------------------------------------------ATTGATCTCG..................................................................................................................................................2015.00500001400000000000
........................................................................................................................................................................................................CTCACATCACTT--CCCTCACAGC..................................................2214.00440000000000000000
.........................................................................................................................................................................................................TCACATCACTT--CCCTCACAG...................................................2014.00400002200000000000
.......................................................................................................................................................................................................TCTCACATCACTT--CCCTCACAGA..................................................2313.00330000000000000000
........................................................................................................................................................................................................CTCACATCACTT--CCCTCACAGG..................................................2213.00330000000000000000
..................................................GT-TGGGGGAC---------------------------------------------------------ATTGATCTCGGAGAT------.......................................................................................................................................2512.00220000000000000000
..................................................GT-TGGGGGAC---------------------------------------------------------ATTGATCTCGGAGT..............................................................................................................................................2412.00220000000000000000
...........................................................................................................................................................................................................ACATCACTT--CCCTCACAG...................................................1811.00100000100000000000
.........................................................................................................................................................................................................TCACATCACTT--CCCTCAC.....................................................1811.00100000100000000000
..................................................GT-TGGGGGAC---------------------------------------------------------ATTGATCTCGGAAT..............................................................................................................................................2411.00110000000000000000
..................................................GT-TGGGGGAC---------------------------------------------------------ATTGATCTCGGC................................................................................................................................................2211.00110000000000000000
...................................................T-TGGGGGAC---------------------------------------------------------ATTGATCTCGGAG...............................................................................................................................................2211.00101000000000000000
...................................................T-TGGGGGAC---------------------------------------------------------ATTGATCTCGGAGA..............................................................................................................................................2311.00110000000000000000
.......................................................................................................................................................................CGGTTTA----ACTGATCCATTC---------TCTC.......................................................................2311.00100000100000000000
..........................................................................................................................................................................................................CACATCACTT--CCCTCACAG...................................................1911.00100000100000000000
..................................................GT-TGGGGGAC---------------------------------------------------------ATTGATCTCGGAGAA------A----------------------................................................................................................................2611.00110000000000000000
.......................................................................................................................................................................................................TCTCACATCACTT--CCCTCACAGAA.................................................2411.00110000000000000000
........................................................GGGAC---------------------------------------------------------ATTGATCTCGGAGG..............................................................................................................................................1911.00110000000000000000
....................................................................................................................................C------G----------------------G----CGGTTTA----ACTGATCCAT......................................................................................2011.00100000100000000000
.........................................................................................................................................................................................................TCACATCACTT--CCCTCACA....................................................1911.00100000100000000000
.......................................................................................................................................................................................................TCTCACATCACTT--CCCTCCAG....................................................2130.33110000000000000000
dm3
CAGCTGCTCAGACAAGCGGCCTCCCAGGACAACCAGTGGCTGGACAAAAGGT-TGGGGGAC---------------------------------------------------------ATTGATCTCGGAGAC------G----------------------G----CGGTTTA----ACTGATCCATTC---------TCTCACATCACTT--CCCTCACAGTGCACGGTGCTTGTACCAGAGTCCCAGCAACATTCAGCGGCCCGACTGCTTSizeHit CountTotal NormTotalGSM154618

Ovary		GSM154620

Ovary		GSM154621

Ovary		GSM154622

Ovary		GSM180328

Head		GSM180329

Mixed-body		GSM180330

Embryo		GSM180331

Embryo		GSM180332

Embryo		GSM180333

Embryo		GSM180334

Larvae		GSM180335

Disc		GSM180336

Pupae		GSM180337

S2		GSM239041

Head		GSM239050

Head		GSM239051

S2		GSM239052

S2		GSM246084

Head		GSM266765

S2		GSM280082

Ovary		GSM280083

Ovary		GSM280084

Ovary		GSM280085

Testis		GSM280086

Ovary		GSM280087

S2-NP		GSM280088

S2-NP		GSM312995

Head		GSM313160

Head		GSM313161

Head		GSM313162

Head		GSM313163

Head		GSM313164

Head		GSM313165

Head		GSM343287

Embryo		GSM379050

Ovary		GSM379051

Ovary		GSM379052

Ovary		GSM379053

Ovary		GSM379054

Ovary		GSM379055

Ovary		GSM379056

Ovary		GSM379057

Ovary		GSM379058

Ovary		GSM379059

Ovary		GSM379060

Ovary		GSM379061

Ovary		GSM379062

Ovary		GSM379063

Ovary		GSM379064

Ovary		GSM379065

Ovary		GSM379066

Ovary		GSM379067

Ovary		GSM424739

S2		GSM424740

S2		GSM424741

S2		GSM467729

Female-body		GSM467730

Female-body		GSM467731

Female-body		M002

CS		M003

Male-body		M004

Male-body		M005

ML-DmD32		M006

ML-DmD32		M029

OSC		M030

OSC		M031

OSC		M032

S2-R+		M033

S2-R+		M034

S2-R+		M035

S2-R+		M036

S2-R+		M037

S2-R+		M038

S2-R+		M039

S2-R+		M048

S2-R+		OSS2

OSS		OSS6

OSS		OSS7

OSS		OSS8

OSS		S1

Head		S10

Embryo		S11

Embryo		S12

Embryo		S13

Embryo		S14

Embryo		S15

S2-GMR		S16

Kc		S17

Larvae		S18

Larvae		S19

Pupae		S2

Head		S20

Pupae		S21

Disc		S22

Head		S23

Female-body		S24

Male-body		S25

Larvae		S26

Larvae		S27

Pupae		S28

Pupae		S29

Head		S3

Male-body		S30

S2-GMR		S31

S2		S32

S2		S33

Kc		S34

Kc		S35

Kc		S4

Female-body		S5

Disc		S6

Embryo		S7

Embryo		S8

S2		S9

Embryo		SRR001337

Head		SRR001338

Head		SRR001339

Head		SRR001340

Head		SRR001341

Head		SRR001342

Head		SRR001343

Head		SRR001344

Head		SRR001345

Head		SRR001346

Head		SRR001347

Head		SRR001348

Head		SRR001349

Head		SRR001664

Head		SRR010951

Ovary		SRR010952

Ovary		SRR010953

Ovary		SRR010954

Ovary		SRR010955

Ovary		SRR010956

Ovary		SRR010957

Ovary		SRR010958

Ovary		SRR010959

Ovary		SRR010960

Ovary		SRR014268

Embryo		SRR014269

Embryo		SRR014270

Embryo		SRR014271

Embryo		SRR014272

Embryo		SRR014273

Ovary		SRR014274

Ovary		SRR014275

Ovary		SRR014276

Ovary		SRR014277

Ovary		SRR014278

Ovary		SRR014279

Ovary		SRR014280

Ovary		SRR014281

Ovary		SRR014282

Ovary		SRR023197

S2		SRR023399

S2		SRR023400

S2		SRR023402

S2		SRR023407

S2		SRR029028

S2		SRR029029

S2		SRR029030

S2		SRR029031

S2		SRR029032

S2		SRR029033

S2		SRR029608

Head		SRR029633

Head		SRR030145

gb3		SRR031692

Head		SRR031693

Head		SRR031694

Head		SRR031696

Head		SRR031697

Head		SRR031698

Head		SRR031699

Head		SRR031700

Head		SRR031701

Head		SRR031702

Head		SRR031703

Head		SRR031704

Head		SRR032092

S2		SRR032093

S2		SRR032094

S2		SRR032095

S2-NP		SRR032096

S2-NP		SRR032152

Head		SRR060643

Testis		SRR060644

Ovary		SRR060645

Testis		SRR060646

Ovary		SRR060647

Ovary		SRR060648

Ovary		SRR060649

Ovary		SRR060650

Testis		SRR060651

Ovary		SRR060652

Testis		SRR060653

Ovary		SRR065151

Ovary		SRR065152

Ovary		SRR065153

Ovary		SRR065154

Ovary		SRR065155

Ovary		SRR065800

Ovary		SRR065801

Ovary		SRR065802

Ovary		SRR065803

Ovary		SRR065804

Ovary		SRR065805

Ovary		SRR065806

Ovary		SRR065807

Ovary		SRR097865

S2-NP		SRR097866

S2-NP		SRR097867

S2-NP		SRR298536

Ovary		SRR298537

Ovary		SRR298711

Ovary		SRR298712

Ovary		SRR317110

Ovary		SRR317111

Ovary		SRR317112

Ovary		SRR317113

Ovary		SRR317114

Ovary		SRR317115

Ovary		SRR317116

Ovary		SRR317117

Ovary		SRR341115

S2		SRR341116

S2		SRR341117

S2		SRR341118

S2		SRR351332

Mixed-body		SRR351333

Mixed-body		T004

OSC		T005

CME-L1		V001

Embryo		V002

Embryo		V003

S2		V006

Female-body		V007

Head		V008

S2		V009

CME-L1		V010

ML-DmD20-C5		V011

Sg4		V012

Male-body		V013

Head		V014

DTT		V015

DreRFHV		V018

Kc167		V019

GM2		V020

S2-R+		V021

ML-DmD21		V022

ML-DmD32		V023

Head		V024

Kc167		V025

S2-R+		V026

1182-2H		V027

ML-DmD21		V028

CME-W1-Cl.8+		V029

ML-DmD9		V030

ML-DmD8		V031

GM2		V032

S1		V033

CME-W1-Cl.8+		V034

ML-DmD16-C3		V035

ML-DmD32		V036

ML-DmD20-C5		V037

S2		V038

S2		V063

Ovary		V0632

Ovary		V064

Ovary		V0642

Ovary		V065

Ovary		V0652

Ovary		V066

Ovary		V0662

Ovary		V067

S2-NP		V073

mbn2		V074

S3		V075

ML-DmBG1-C1		V076

ML-DmBG3-C2		V077

Head		V078

Head		V079

Head		V080

Head		V081

Embryo		V082

Embryo		V083

Male-body		V084

Female-body		V085

CME-W2		V086

Female-body		V088

Ovary		V0882

Ovary		V089

Ovary		V0892

Ovary		V090

Male-body		V091

fGS/OSS		V092

Male-body		V093

Male-body		V094

S2-R+		V095

S2-R+		V096

Ovary		V097

Ovary		V098

Ovary		V125

ML-DmD9		V126

CME-L1		V127

G2		V128

S3		V129

ML-DmBG1-C1		V130

ML-DmBG3-C2		V131

ML-DmD16-C3		V132

ML-DmD32		V133

Sg4		V134

ML-DmD8		V135

CME-W2		V136

Male-body		V137

Head		V138

Male-body		V139

Female-body		V140

Female-body		V141

Female-body		V142

Female-body		V144

OSC		V145

S2		V146

S1		V147

1182-2H		V148

mbn2		GSM1528798

follicle cells
.......................................................................................................................................................................................................TCTCACATCACTT--CCCTCACAG...................................................2214429.004429000032200022530000400000123000010653200000000002000101000000031000000000000000000001098001120005620182103936017674249358161500102631421302321241119011524013691589800000000000000000000000000000000000090200012800114341671740108700000388100900005070000000000000000001010138301700010000114013200308124014000012100000000000720002000000000013924235902100100003001000000000000200009230333000000
........................................................................................................................................................................................................CTCACATCACTT--CCCTCACAGT..................................................2211042.001042000011000000002000000003000000000000000000000000000000000000000000000000000000002001000001021105247200531172000000021003013002013309448000000000000000000001000000000000000192901200450110110460000009150100000702000000000000000000000000000010000000011021920002330400000110000000000010000000000100100483853950200010000302300000300000030003229841986201000
.......................................................................................................................................................................................................TCTCACATCACTT--CCCTCACA....................................................211916.0091600003000000100000100000150000102190000000000000000000000000010000000000000000000001800000000442404293610521362001000110000032205035803932736000000000000000000000000000000000000847021004510021122045200000145204000020100000000000000000000001000002000000000101500000240000000200000000000010100000000000007561300100000002000000000000000000001500000000000
..................................................GT-TGGGGGAC---------------------------------------------------------ATTGATCTCGGAG...............................................................................................................................................231822.008220000000000000000000000000001300000000000000000000000000000000000000000000000000010000000001301152000011200000000100000020101200000711000000000000000000001000000000000000130021221022126382120000018150140000401800000200000000000200000000000000000004404500002340600001230000000000012000000000000000202016240458548000000400990000020001000700016030335200000
..................................................GT-TGGGGGAC---------------------------------------------------------ATTGATCTCGGAGA..............................................................................................................................................241550.0055000000000000000000000000000005000000000000000000000000000001000000000000000000000000000000000005010000900000000000000000003000005800000000000000000000100000000000000091024001419016690000000034609000000600000000000000000100000000000100021004402000202010200000900000100101211001000000000003816101972515000100280390000021000003600023331114000110
..................................................GT-TGGGGGAC---------------------------------------------------------ATTGATCTCGGA................................................................................................................................................221175.0017500000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000001000000000000000000002000001100000000000000000000000000000000000030010002060300000000630100000501500000000000000000000000010000000000001000000007103000007000000000002000000000000000136271413501000020090000010000000000001510102100000
........................................................................................................................................................................................................CTCACATCACTT--CCCTCACAGA..................................................221136.00136000010000000000000000000000000000000000000000000000000000000000000000000000000001000000000111131000306000100000000305001010201160000000000000000000000000000000000000101607003102050212000005000000000100000000000000000000000000000000000000000100000200000001000000000000000000000000000031320000000000000000000000000000000800020000000
..................................................GT-TGGGGGAC---------------------------------------------------------ATTGATCTCGG.................................................................................................................................................211105.001050000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000010000000000000000010100000000000000000001000000010000000000000000004000205030200000004060000201300000000000000000000000000000000000002000200002001001011000000000000000000000000000042250253030000201000000000001050000712002000000
..................................................GT-TGGGGGAC---------------------------------------------------------ATTGATCTCGGAGAT------C----------------------................................................................................................................26179.007900000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000004336000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................TCTCACATCACTT--CCCTCAC.....................................................20177.00770000000000000000000000020000000000000000000000000000000000000000000000000000000030000000000201512000018000000000000001010000106022000000000000000000000000000000000000120100310201020000008000000000000000000000000000000000000000000000001000100001201000001000000000000000000000000000001000000000000000000000000000000000100000000000
.........................................................................................................................................................................................................TCACATCACTT--CCCTCACAGT..................................................21167.006700000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000001000000120000000000000010000000030110000000000000000000000000000000000001102001000000300000050020000000000000000000000000000000000000000000000000000003000000000000000000002000000000000000232300000000001021000001000000000001000000200000
........................................................................................................................................................................................................CTCACATCACTT--CCCTCACAG...................................................21147.0047000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000220030100009000000000000001000000001012000000000000000000000000000000000000340300000200020000001000000000100000000000000000000000000100000000000000000000201000000000000000000000000000000000000120000000000000000000000000000000100000000000
.......................................................................................................................................................................................................TCTCACATCACTT--CCCTCACAGT..................................................23126.0026000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000001000000000000000000000000000000000000000200000110000001000000503000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000011020000000000000000000100000000000200020000000
.......................................................................................................................................................................................................TCTCACATCACTT--CCCTCACAGA..................................................23124.0024000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010020000000000000000000001000000000120000000000000000000000000000000000000120100010000020000007000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000100000000000
.......................................................................................................................................................................................................TCTCACATCACTT--CCCTCA......................................................19121.0021000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000111000000000000000001000000131000000000000000000000000000000000000020000200001010000004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000
.......................................................................................................................................................................................................TCTCACATCACTT--CCCTCACAA...................................................22121.0021000011000000000000000001000000000000000000000000000000000000000000000000000000001000000000050100000004000100000000102000000000000000000000000000000000000000000000000010000000001000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................TCTCACATCACTT--CCCTCACAT...................................................22118.0018000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000100000000000000000000000007113000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000001100000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................CTCACATCACTT--CCCTCACAGC..................................................22118.0018000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000002000000101000000000000000000000000000000000000000020100000000060000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000010000000000000000000000000000001000000
.......................................................................................................................................................................................................TCTCACATCACTT--CCCTCACC....................................................21118.0018000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003100000003023000000000000000000000000000000000000110100000000000000000000000000000000000000000000000000000000000000000000200000100000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................GT-TGGGGGAC---------------------------------------------------------ATTGATCTCGGAA...............................................................................................................................................23117.0017000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000100000000000000000000000000000000000000100100000100000000000101000000100000000000000000000000000000000000000000000000000000001000000000000000000000000000000000040000000201000000000000000000000000000000
..................................................GT-TGGGGGAC---------------------------------------------------------ATTGATCTCGGAGAC------G----------------------................................................................................................................26116.0016000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000100100310000000000005100000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000010000000000000000000000000000100000000000
..................................................GT-TGGGGGAC---------------------------------------------------------ATTGATCTCGGAGAA------T----------------------C----...........................................................................................................27115.00150000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000105000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................TCTCACATCACTT--CCCTCACAC...................................................22113.0013000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000010000000006000000000000000000000002000000000000000000000000000000000000000110000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................CTCACATCACTT--CCCTCACA....................................................20113.0013000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000022000000010000000010000000000000000000000000000000000000000000000110100001000020000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................TCTCACATCACTT--CCCTC.......................................................18113.0013000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000030000000800000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................CACATCACTT--CCCTCACAG...................................................19113.0013000000000000000000000001000000000000000000000000000000000000000000000000000000010000000010000010000000000000000000000000000000010000000000000000000000000000000000000100100000101000000001000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000001010000000000000000000000000000000000000000000
.........................................................................................................................................................................................................TCACATCACTT--CCCTCACAGA..................................................21112.0012000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000010000000000000000000000000000000000000000000030000000001030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000100001000000
..................................................GT-TGGGGGAC---------------------------------------------------------ATTGATCTCGGAGC..............................................................................................................................................24110.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000101000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000100000000000001000000000000000000000000000000000210000000100000000000000000000000000000000
..................................................GT-TGGGGGAC---------------------------------------------------------ATTGATCTCGGAGAA------.......................................................................................................................................2519.009000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000021000000001000000000000000000300001000000
..................................................GT-TGGGGGAC---------------------------------------------------------ATTGATCTCG..................................................................................................................................................2019.009000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001001000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000020000000000000000000000002100000000000
.........................................................................................................................................................................................................TCACATCACTT--CCCTCACAG...................................................2018.008000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000001000000000000000000000000000000000000000100000000000000003000000000000000000000000000000000000000000000000000000000100000001000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................C------G----------------------G----CGGTTTA----ACTGATCCATTC---------...........................................................................2218.008000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000001000010000000000000000000000000000000000000000000210000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................CACATCACTT--CCCTCACAGT..................................................2018.008000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000100000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000100000000000000000000110000000000
.......................................................................................................................................................................................................TCTCACATCACTT--CCCTCACCT...................................................2217.007000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002014000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................GT-TGGGGGAC---------------------------------------------------------ATTGATCTCGGAGAC------.......................................................................................................................................2517.007000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000012000000000000000000001000000000001000000000000000001000000000000000000000000000000000000000000000
..................................................GT-TGGGGGAC---------------------------------------------------------ATTGATCTCGGAGAC------G----------------------A----TC.........................................................................................................2917.007000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000034000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................TCTCACATCACTT--CCCTCACG....................................................2116.006000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000010000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................GT-TGGGGGAC---------------------------------------------------------ATTGATCTCGGAGG..............................................................................................................................................2414.004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................TCTCACATCACTT--CCCTCACAGAA.................................................2414.004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000001000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................ACATCACTT--CCCTCACAGT..................................................1914.004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010010000000000000000000000000000000100000000000
..................................................GT-TGGGGGAC---------------------------------------------------------ATTGATCTCGGAC...............................................................................................................................................2314.004000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001001000000000000000000000000010000000000000000
........................................................................................................................................................................................................CTCACATCACTT--CCCTCACAGTG.................................................2313.003000000000000000000000000000000000000000000000000000000002010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................T-TGGGGGAC---------------------------------------------------------ATTGATCTCGGAGA..............................................................................................................................................2313.003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
..................................................GT-TGGGGGAC---------------------------------------------------------ATTGATCTCGGAGAA------A----------------------................................................................................................................2613.003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000
..................................................GT-TGGGGGAC---------------------------------------------------------ATTGATCTCGGAGAT------.......................................................................................................................................2513.003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000100000000000000000000100000000000
..................................................GT-TGGGGGAC---------------------------------------------------------ATTGATCT....................................................................................................................................................1813.003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000110000000000000000000000000000000000000000
......................................................GGGGGAC---------------------------------------------------------ATTGATCTCGGAGA..............................................................................................................................................2113.003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000003000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEug1
CAGCTGCTCCGACAAGCAGCCTCGCAGGACAACCAGTGGCTGGACAAAAGGT-TGGGGGAC---------------------------------------------------------ACTGATCTCGGAGAT------CGCTGAT----------------C----CGA-TTT----ACTGATCTATTC---------TCTCACATCACTT--CCCTCACAGCGCGCGGTGCCTGTACCAAAGCCCCACTAACATTCAGAGGCCCGACTGCTTSizeHit CountTotal NormTotal
No Reads
droBia1
CAGCTGCTCAGACAAGCGGCCTCCCAGGACAACCAGTGGCTGGACAAGAGGT-TGGGGGAC---------------------------------------------------------ACTGATCTCGGAGACTGATC--------C---------------A----TT-CCTT----ACTGATCCACTC---------TCTCACATCACTT--CCCTCACAGTGCGCGGTGCTTGTACCAGAGCCCCACCAACATTCAGAGGCCCGATTGCTTSizeHit CountTotal NormTotal
No Reads
droTak1
CAGCTGCTCAGGCAGGCCGCCTCGCAGGACAACCAGTGGCTGGACAAAAGGT-TGGGGGAC---------------------------------------------------------ACTGATCTCGGAGACTGATC--------C--------------------CGATCTT---TACTGATCCATTC---------TCTCACATCACTT--CCCTCACAGTGCGCGGTGCTTGTACCAGAGTCCCACCAACATTCAGAGGCCCGATTGCTTSizeHit CountTotal NormTotal
No Reads
droEle1
CAACTCCTGCGGCAGGCGGCCTCGCAGGACAACCAGTGGCTGGACAAAAGGT-GCGGTTTC---------------------------------------------------------ATTGATCTTGGAGACCTTTTCG----------------------A----CTATCCT----AGTGATCCATTC---------TCTCACATCACTT--CCCTTATAGCGCGAGGTGCCTGTACCAGAGTCCCACCAACATTCAGAGGCCCGACTGCTTSizeHit CountTotal NormTotal
No Reads
droRho1
CAACTGCTGAGACAAGCGGCCTCGCAGGACAACCAGTGGCTGGACAAAAGGT-TGGGGGAC---------------------------------------------------------ATTGATCTTGGAGAC------G----------------------G----CTGGCTT----ACTGATCCATTC---------TCTCACATCACTT--CCCTCACAGCGCGCGGTGCCTGTACCAGAGTCCCACCAACATTCAGAGGCCCGACTGCTTSizeHit CountTotal NormTotal
No Reads
droFic1
CAGCTGCTGCGGCAGGCCGCCTCGCAGGACAACCAGTGGCTGGACAAGAGGT-TGGGGGAC---------------------------------------------------------ACTGATCTCGGAGAATCGCT--------C---------------A----TTCGCTC----ACTGATCCATTC---------TCTCACATCTCTT--CCCTCACAGCGCGCGGGGCCTGTACCAGAGCCCGGGGAGCATCCAGAGGCCCGACTGCTTSizeHit CountTotal NormTotal
No Reads
droKik1
CAGCTGCTGAGGCAGGCGGCCGCCCAGGACAACCAGTGGCTCGACAAGAGGT--GAAGGAC---------------------------------------------------------ACTGATCTTAGAGAAAGGCA------A-CA--------------G----CAAATTA----TATG--TAATTC---------TCTCACATCACTT--CCTTCACAGTGCGAGGTGCTTGTACCAGAGTCCCAGCAACATTCAGAGGCCCGATTGCTTSizeHit CountTotal NormTotal
No Reads
droAna3
CAGCTCCTGCGGCAGGCCGCCTCCCAGGACAACCAGTGGCTGGACAAGAGGT-GAGATAACACGTTCTAACCAACTGATATGAAACTACGAATGTTTTTATCGCTGTCG----ATTCGAACGATCTCTCATAT------AAC-----------------------------------------------------------------CGTAC--CTATTACAGTGCGCGGTGTCTGTACCAGAGCCCCACCAGCATCCAAAGGCCCGATTGCTTSizeHit CountTotal NormTotalM044

Female-body		M058

Embryo		V039

Embryo		V055

Head		V105

Male-body		V106

Head
......................................................................................................GCTGTCG----ATTCGAACGATC.....................................................................................................................................................1916.006000114
..............................................................CGTTCTAACCAACTGATATGAAACTACG........................................................................................................................................................................................2813.003300000
.............................................................................................GTTTTTATCGCTGTCG----ATTCGA...........................................................................................................................................................2213.003000003
...................................................................................................ATCGCTGTCG----ATTCGAACGATC.....................................................................................................................................................2213.003000003
..............................................................CGTTCTAACCAACTGATATGAAACT...........................................................................................................................................................................................2512.002000002
...................................................................................AACTACGAATGTTTTTATCGCT.........................................................................................................................................................................2212.002200000
......................................................................................TACGAATGTTTTTATCGCTGT.......................................................................................................................................................................2111.001100000
...........................................................................TGATATGAAACTACGAATGT...................................................................................................................................................................................2011.001000010
.........................................................................................GAATGTTTTTATCGCTGTCG----ATTC.............................................................................................................................................................2411.001100000
...................................................................................AACTACGAATGTTTTTATCGC..........................................................................................................................................................................2111.001000001
......................................................................................................GCTGTCG----ATTCGAACGATCT....................................................................................................................................................2011.001000010
.................................................................................................TTATCGCTGTCG----ATTCGAACGATC.....................................................................................................................................................2411.001000010
....................................................................AACCAACTGATATGAAACTACGAATGT...................................................................................................................................................................................2711.001010000
..............................................................CGTTCTAACCAACTGATAT.................................................................................................................................................................................................1911.001100000
........................................................................AACTGATATGAAACTACGAATGT...................................................................................................................................................................................2311.001100000
............................................................................................TGTTTTTATCGCTGTCG----ATTCGAACG........................................................................................................................................................2611.001100000
...............................................................GTTCTAACCAACTGATATGAAACTACG........................................................................................................................................................................................2711.001100000
.............................................................................................GTTTTTATCGCTGTCG----ATTC.............................................................................................................................................................2011.001100000
.............................................................................................GTTTTTATCGCTGTCG----ATTCG............................................................................................................................................................2111.001100000
...............................................................................ATGAAACTACGAATGTTTTTATCGC..........................................................................................................................................................................2511.001100000
........................................................................AACTGATATGAAACTACGAAT.....................................................................................................................................................................................2111.001000001
.................................................................TCTAACCAACTGATATGAAACT...........................................................................................................................................................................................2211.001100000
.......................................................GATAACACGTTCTAACCAACTGATAT.................................................................................................................................................................................................2611.001100000
.......................................................................................ACGAATGTTTTTATCGCTGTCG----AT...............................................................................................................................................................2411.001100000
.............................................................................................GTTTTTATCGCTGTCG----ATTCGAACGATC.....................................................................................................................................................2811.001100000
.................................................................................GAAACTACGAATGTTTTTATCGC..........................................................................................................................................................................2311.001100000
............................................................................GATATGAAACTACGAATGTTTT................................................................................................................................................................................2211.001000001
..................................................................................................TATCGCTGTCG----ATTCGAACGATC.....................................................................................................................................................2311.001100000
droBip1
CAACTTCTAAGACAGGCCGCTGCCCAGGACAACCAGTGGCTGGACAAGAGGT-ACGATCGAA------------------------------T----------CTCTCGTATAATTCAAACGATCTCTCATAT------AAC-----------------------------------------------------------------CGTCT--CTCCTACAGTGCCCGGTGTTTGTATCAGAGCCCCACCAGCATCCAAAGGCCCGATTGCTTSizeHit CountTotal NormTotal
No Reads
dp5
AATCTGCTGCGCCAGGCTGCGTCCCAGGATAACCAGTGGCTGGACAAGAGGTGTGTGGGAT---------------------------------------------------------ACTGATTTTAGAGAAAAAAA------AA-A-----CC-------A----TTAACGT----GAGGCTTCG-TT---------TCTCACATCATTTTCCCCTCACAGTGCCCGGTGCCTGTACCAGGCTCCGACCAGCATTCAGAGGCCTGATTGCTTSizeHit CountTotal NormTotalM022

Male-body		M040

Female-body		M059

Embryo		M062

Head		V043

Embryo		V051

Head		V112

Male-body		SRR902010

Ovary		SRR902011

Testis		SRR902012

CNS imaginal disc
.........................................................................................................................................................................................................TCACATCATTTTCCCCTCACAG...................................................221185.0018508422622141000
.........................................................................................................................................................................................................TCACATCATTTTCCCCTCACAGT..................................................231104.001040163432364000
.........................................................................................................................................................................................................TCACATCATTTTCCCCTCACA....................................................21156.0056038016020000
.........................................................................................................................................................................................................TCACATCATTTTCCCCTCACAGC..................................................23121.002100615000000
..................................................GTGTGTGGGAT---------------------------------------------------------ACTGATTTTAGAGA..............................................................................................................................................25118.001802111020011
.........................................................................................................................................................................................................TCACATCATTTTCCCCTCACAGA..................................................2317.0070303010000
..........................................................................................................................................................................................................CACATCATTTTCCCCTCACAG...................................................2116.0060600000000
.............................................................................................................................................................................................................ATCATTTTCCCCTCACAG...................................................1813.0030003000000
..........................................................................................................................................................................................................CACATCATTTTCCCCTCACAGT..................................................2213.0030101010000
...........................................................................................................................................................................................................ACATCATTTTCCCCTCACAGT..................................................2113.0030001020000
..........................................................................................................................................................................................................CACATCATTTTCCCCTCACA....................................................2013.0030300000000
.........................................................................................................................................................................................................TCACATCATTTTCCCCTCACAC...................................................2213.0030003000000
.........................................................................................................................................................................................................TCACATCATTTTCCCCTCACAGTC.................................................2412.0020011000000
.........................................................................................................................................................................................................TCACATCATTTTCCCCTCACAA...................................................2212.0020001010000
..................................................GTGTGTGGGAT---------------------------------------------------------ACTGATTTTAGA................................................................................................................................................2312.0020010000001
.........................................................................................................................................................................................................TCACATCATTTTCCCCTCAC.....................................................2012.0020002000000
........................................................................................................................................................................................................CTCACATCATTTTCCCCTCACAGT..................................................2411.0010001000000
...........................................................................................................................................................................................................ACATCATTTTCCCCTCACAG...................................................2011.0010010000000
..................................................GTGTGTGGGAT---------------------------------------------------------ACTGATTTTAGAGAA.............................................................................................................................................2611.0010010000000
..........................................................................................................................................................................................................CACATCATTTTCCCCTCAC.....................................................1911.0010100000000
.........................................................................................................................................................................................................TCACATCATTTTCCCCTCACACCC.................................................2411.0010001000000
..........................................................................................................................................................................................................CACATCATTTTCCCCTCACAGTT.................................................2311.0010001000000
...........................................................AT---------------------------------------------------------ACTGATTTTAGAGAAAAAAA------A.................................................................................................................................2311.0010001000000
............................................................................................................................................................................................................CATCATTTTCCCCTCACAG...................................................1911.0010001000000
...........................................................................................................................................................................................................ACATCATTTTCCCCTCACA....................................................1911.0010001000000
..........................................................................................................................................................................................................CACATCATTTTCCCCTCACAGA..................................................2211.0010100000000
.........................................................................................................................................................................................................TCACATCATTTTCCCCTCACAT...................................................2211.0010100000000
....................................................................................................................................AAAAAA------AA-A-----CC-------A----TTAACGT----GAGGCTTC........................................................................................2711.0010001000000
..................................................GTGTGTGGGAT---------------------------------------------------------ACTGATTTT...................................................................................................................................................2011.0010000000001
droPer2
AATCTGCTGCGCCAGGCTGCCTCCCAGGATAACCAGTGGCTGGACAAGAGGTGTGTGGGAT---------------------------------------------------------ACTGATTTTAGAGAAAAATA------A--------CC-------A----TTAACGT----GAGGCTTCG-TT---------TCTCACATCATTTTCCCCTCACAGTGCCCGGTGCCTGTACCAGGCTCCGACCAGCATTCAGAGGCCTGATTGCTTSizeHit CountTotal NormTotalM021

Embryo		M042

Female-body		V042

Embryo		V050

Head		V057

Head		V111

Male-body
.........................................................................................................................................................................................................TCACATCATTTTCCCCTCACAGT..................................................23150.005015018251
.........................................................................................................................................................................................................TCACATCATTTTCCCCTCACAG...................................................22140.00400203890
.........................................................................................................................................................................................................TCACATCATTTTCCCCTCACA....................................................21114.0014040460
..................................................GTGTGTGGGAT---------------------------------------------------------ACTGATTTTAGAGA..............................................................................................................................................25111.0011200126
..........................................................................................................................................................................................................CACATCATTTTCCCCTCACAG...................................................2114.004030100
..........................................................................................................................................................................................................CACATCATTTTCCCCTCACAGT..................................................2214.004010300
..................................................GTGTGTGGGAT---------------------------------------------------------ACTGATTTTAGAGAA.............................................................................................................................................2611.001000010
.........................................................................................................................................................................................................................................CTGTACCAGGCTCCGACCAGCATT.................2411.001010000
.........................................................................................................................................................................................................TCACATCATTTTCCCCTCACAGA..................................................2311.001010000
.........................................................................................................................................................................................................TCACATCATTTTCCCCTCACAGC..................................................2311.001000010
............................................................................................................................................................................................................CATCATTTTCCCCTCACAG...................................................1911.001010000
..........................................................................................................................................................................................................CACATCATTTTCCCCTCACA....................................................2011.001000010
droWil2
AATCTTTTGCGTCAGGCGGCTTCACAGGATAATCAATGGTTGGATAAAAGGT--GGGGTAC---------------------------------------------------------AACAACAACAAAAAT-----------------------------A----CGAATAT----AATGGTAAACTCTCTCTCTCATCTCTTATCATTTTCTCCTCACAGTGCGCGTTCACTTTATCAGAGTCCATCGAGCATAATTCGGCCCGATTGCTTSizeHit CountTotal NormTotalM020

Head		M045

Female-body		V117

Male-body		V118

Embryo		V119

Head
..............................................................................................................................................................................................................................GTGCGCGTTCACTTTATCAGAGTCCAT.........................2711.00100010
droVir3
AATTTGCTGCGCCAGGCGGCCACACAGGATAATCAGTGGCTGGACAAAAGGT-TGGGGCAC---------------------------------------------------------ATTGATCTTCAAGAAACTCA--------CA--------------G----CCAGCTC----ATTTACTCACTCTCTC-----TCTCTT--C-TCT--CCCTCACAGTGCCCGCTGTCTGTACCAGAGCCCAGGCAACATTGTGCGACCCGATTGCTTSizeHit CountTotal NormTotalM027

Male-body		M028

Head		M047

Female-body		M061

Embryo		SRR060654

Ovary		SRR060655

Testis		SRR060656

Ovary		SRR060657

Testis		SRR060658

Ovary		SRR060659

Testis		SRR060660

Ovary		SRR060661

Embryo		SRR060662

Embryo		SRR060663

Embryo		SRR060664

Male-body		SRR060665

Female-body		SRR060666

Male-body		SRR060667

Female-body		SRR060668

Male-body		SRR060669

Female-body		SRR060670

Testis		SRR060671

Male-body		SRR060672

Female-body		SRR060673

Ovary		SRR060674

Ovary		SRR060675

Ovary		SRR060676

Ovary		SRR060677

Ovary		SRR060678

Testis		SRR060679

Testis		SRR060680

Testis		SRR060681

Testis		SRR060682

Embryo		SRR060683

Testis		SRR060684

Embryo		SRR060685

Embryo		SRR060686

Embryo		SRR060687

Embryo		SRR060688

Ovary		SRR060689

Testis		SRR1106712

embryo_0-2h		SRR1106713

embryo_0-2h		SRR1106714

embryo_2-4h		SRR1106715

embryo_4-6h		SRR1106716

embryo_4-6h		SRR1106717

embryo_6-8h		SRR1106718

embryo_6-8h		SRR1106719

embryo_8-10h		SRR1106720

embryo_8-10h		SRR1106721

embryo_10-12h		SRR1106722

embryo_10-12h		SRR1106723

embryo_12-14h		SRR1106724

embryo_12-14h		SRR1106725

embryo_14-16h		SRR1106726

embryo_14-16h		SRR1106727

larvae		SRR1106728

larvae		SRR1106729

mixed whole adult body		SRR1106730

embryo_16-30h		V047

Embryo		V053

Head		V116

Male-body		GSM1528803

follicle cells		SRR2096013

Ovary_Strain_9_oxidized		SRR2096014

Ovary_Strain_160_oxidized		SRR2096026

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096038

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096050

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096055

Ovary_Min_43		SRR2096056

Ovary_Min_46		SRR2096057

Ovary_Min_50		SRR2096058

Ovary_Min_98		SRR2096059

Ovary_Min_164		SRR2096060

Ovary_Min_193		SRR2096061

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096072

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096079

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096080

embryo_0-2h from 15to16 day old nondysgenic mothers		SRR2096081

embryo_0-2h from 15to16 day old nondysgenic mothers
............................................................................................................................................................................................................................................TACCAGAGCCCAGGCAACAT..................2011.0010000000000000000010000000000000000000000000000000000000000000000000000000000000
.................................CAGTGGCTGGACAAAAGGC-A............................................................................................................................................................................................................................2030.3310000000000000000000000000000000000000000000000000000000000001000000000000000000
droMoj3
AATTTGCTGCGCCAAGCGGCCAATCAGGATAATCAGTGGCTGGACAAGAGGT-A----------------------------------------------------------------ATTGATCACTCCTAT------CTCTGTC----------------T----CTCTTTCTCTTTCT----GACTC---------TCTCCCA-CTCTT--TATTTGTAGTGCTCGCTGCCTGTACCAGAGCCCGGGCAGCATTGTGCGACCCGATTGCTTSizeHit CountTotal NormTotalM046

Female-body		V041

Embryo		V049

Head		V056

Head		M060

Embryo		V110

Male-body
No Reads
droGri2
AACTTGCTGCGCCAAGCGGCCACTCAAGACAATCAGTGGCTGGACAAAAGGT-AGGAGAGCAC-------------------------------------------------------ATTGATCTTGAAGAAACTTG--------CAGAAAACTCTCTAATACTCTCACTCCATTTCTCT----AACTCTCCCTCTC-TCTTATTTAACTT--CA-TTTTAGTGCGCGCTGTTTATATCAGAGCCCCGCCAGCATTGTGCGGCCCGATTGCTTSizeHit CountTotal NormTotalM041

Female-body		V109

Male-body
No Reads

Generated: 10/20/2015 at 07:26 PM