der_45

TGAGAAACATGACTACGGAGAGTACCAAACTAGCACTGCAGCTTCAAGCTTTTCCCCACTCCTTGCTTTAGTACTTATTTTAATGTCGTATTAAAGCCAGAGTTTGGAAAGTTTTGATTCTGCTTCTTAAATCGCCACCCAACTTATAGTATTCCAAAAATAT *********************************..((((..(((((.((((((..((((...((((((((((.............))))))))))..))))..)))))).)))))..))))....**********************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V107 male body	V108 head	M055 female body	V060 head	V040 embryo	M057 embryo
..........................................................................................TTAAAGCCAGAGTTTGGAAAGT...................................................	22	0	2	508.50	1017	882	77	42	10	3	3
..........................................................................................TTAAAGCCAGAGTTTGGAAAG....................................................	21	0	2	375.50	751	659	79	9	3	1	0
..........................................................................................TTAAAGCCAGAGTTTGGAAA.....................................................	20	0	2	101.00	202	177	20	4	1	0	0
..........................................................................................TTAAAGCCAGAGTTTGGAAAGTA..................................................	23	1	2	23.50	47	41	3	2	1	0	0
..........................................................................................TTAAAGCCAGAGTTTGGAAAGTT..................................................	23	0	2	15.00	30	27	1	2	0	0	0
..........................................................................................TTAAAGCCAGAGTTTGGAAAGA...................................................	22	1	2	11.00	22	20	1	1	0	0	0
..........................................................................................TTAAAGCCAGAGTTTGGAAAA....................................................	21	1	3	8.67	26	24	2	0	0	0	0
..........................................................................................TTAAAGCCAGAGTTTGGAA......................................................	19	0	3	8.00	24	22	0	1	0	1	0
..........................................................................................TTAAAGCCAGAGTTTGGAAAGTAA.................................................	24	2	2	6.50	13	9	1	2	1	0	0
..................................................TTTCCCCACTCCTTGCTTTAGT...........................................................................................	22	0	2	5.00	10	6	0	3	1	0	0
..........................................................................................TTAAAGCCAGAGTTTGGAAAGTAAA................................................	25	3	2	4.00	8	5	0	3	0	0	0
..........................................................................................TTAAAGCCAGAGTTTGGAAAT....................................................	21	1	2	3.50	7	7	0	0	0	0	0
..................................................TTTCCCCACTCCTTGCTTTAG............................................................................................	21	0	2	3.50	7	4	1	2	0	0	0
..........................................................................................TGAAAGCCAGAGTTTGGAAAGT...................................................	22	1	2	3.00	6	6	0	0	0	0	0
..........................................................................................TGAAAGCCAGAGTTTGGAAAG....................................................	21	1	2	2.00	4	4	0	0	0	0	0
...........................................................................................TAAAGCCAGAGTTTGGAAAGT...................................................	21	0	2	2.00	4	2	0	2	0	0	0
..........................................................................................TTAAAGCCAGCGTTTGGAAAG....................................................	21	1	2	2.00	4	4	0	0	0	0	0
..........................................................................................TTAAAGCCAGAGTTTGAAAAG....................................................	21	1	2	2.00	4	4	0	0	0	0	0
..........................................................................................TTAAAGCCGGAGTTTGGAAAG....................................................	21	1	2	2.00	4	2	0	0	1	1	0
...........................................................................................TAAAGCCAGAGTTTGGAAAG....................................................	20	0	2	2.00	4	1	1	2	0	0	0
..........................................................................................TTAAAGCCAGATTTTGGAAAGT...................................................	22	1	2	1.50	3	2	1	0	0	0	0
..........................................................................................TTAAATCCAGAGTTTGGAAAGT...................................................	22	1	2	1.50	3	2	1	0	0	0	0
..........................................................................................TTAAAGCCGGAGTTTGGAAAGT...................................................	22	1	2	1.50	3	3	0	0	0	0	0
..........................................................................................TTAAAGCCAGAGTTTTGAAAG....................................................	21	1	2	1.50	3	0	3	0	0	0	0
..........................................................................................TTAAAGCCAGAGATTGGAAAG....................................................	21	1	2	1.50	3	3	0	0	0	0	0
..........................................................................................TTAAAGCCGGAGTTTGGAAA.....................................................	20	1	2	1.50	3	3	0	0	0	0	0
..........................................................................................TTAAAGCCAGAGTTTGGAAAAA...................................................	22	2	3	1.33	4	3	1	0	0	0	0
..........................................................................................TTAAAGCCAGAGTTTGGCAAG....................................................	21	1	2	1.00	2	2	0	0	0	0	0
..........................................................................................TTAAAGCCAGAGTTTGGAAAGAA..................................................	23	2	2	1.00	2	1	1	0	0	0	0
..........................................................................................TTAAAGCTAGAGTTTGGAAAG....................................................	21	1	2	1.00	2	2	0	0	0	0	0
..........................................................................................TTAAAGCCAGAGTTTGGAAAGG...................................................	22	1	2	1.00	2	2	0	0	0	0	0
..........................................................................................TTAAAGCCAGAGTTTGGGAAGT...................................................	22	1	2	1.00	2	2	0	0	0	0	0
..........................................................................................TTAAAGCCAGAGTTTGGAAAGC...................................................	22	1	2	1.00	2	2	0	0	0	0	0
..........................................................................................TTAAAGCCAGAGGTTGGAAAG....................................................	21	1	2	1.00	2	2	0	0	0	0	0
..........................................................................................TTAAAGCCAGAGTTTAGAAAGT...................................................	22	1	2	1.00	2	1	1	0	0	0	0
..........................................................................................TTAAAGCAAGAGTTTGGAAAGT...................................................	22	1	2	1.00	2	1	0	1	0	0	0
..........................................................................................TTAAAGCCAGAGTTTGGAAAGTTA.................................................	24	1	2	1.00	2	2	0	0	0	0	0
.........................................................................................ATTAAAGCCAGAGTTTGGAAA.....................................................	21	0	2	1.00	2	2	0	0	0	0	0
..........................................................................................TTAAAGCCAGCGTTTGGAAAGT...................................................	22	1	2	1.00	2	2	0	0	0	0	0
..........................................................................................TTAAAGCCAGAGTTTGGAAAGAT..................................................	23	1	2	1.00	2	2	0	0	0	0	0
..........................................................................................TTAAAGTCAGAGTTTGGAAAGT...................................................	22	1	2	1.00	2	2	0	0	0	0	0
..........................................................................................TTAAAGCCGGAGTTTGGAA......................................................	19	1	3	0.67	2	2	0	0	0	0	0
..........................................................................................TTAAAGCCAGAGTTTGGAAT.....................................................	20	1	3	0.67	2	2	0	0	0	0	0
..........................................................................................TTAAAGCCAGAGTTTGGAGAGT...................................................	22	1	2	0.50	1	1	0	0	0	0	0
..........................................................................................TTAAAGCCAGAGGTTTGAAAGT...................................................	22	2	2	0.50	1	1	0	0	0	0	0
..........................................................................................TTAAAGCCAGAGTTTGAAAAGT...................................................	22	1	2	0.50	1	1	0	0	0	0	0
..........................................................................................TTAAAGCCAGATTTTTGAAAGT...................................................	22	2	2	0.50	1	0	1	0	0	0	0
..................................................TTTCCCCACTCCTTGCTTTAGTAAA........................................................................................	25	2	2	0.50	1	0	0	1	0	0	0
..........................................................................................TTAAGGCCAGAGTTTGGAAAG....................................................	21	1	2	0.50	1	1	0	0	0	0	0
..........................................................................................TTAAAGCCAGAGTTTGGGAAG....................................................	21	1	2	0.50	1	1	0	0	0	0	0
..........................................................................................TTAAAGCCGGAGTTTGGAAAGTA..................................................	23	2	2	0.50	1	1	0	0	0	0	0
..........................................................................................TTAAAGCCAGAGTTTGGACAGT...................................................	22	1	2	0.50	1	1	0	0	0	0	0
..................................................TTTCCCCACTCCTTCCTTTAGT...........................................................................................	22	1	2	0.50	1	0	0	1	0	0	0
..........................................................................................TTAAGGCCAGAGTTTGGAAAGT...................................................	22	1	2	0.50	1	0	1	0	0	0	0
..........................................................................................TTAAAGCCAGAGTTTGTAAAG....................................................	21	1	2	0.50	1	0	0	0	1	0	0
..........................................................................................TTAAAGCCAGAGTTTGGAAATT...................................................	22	1	2	0.50	1	0	0	1	0	0	0
..........................................................................................TTAAAGCCAGAGTTTGTAAAGTT..................................................	23	1	2	0.50	1	1	0	0	0	0	0
..........................................................................................TTAAAGCCAGAGTCTGGAAAG....................................................	21	1	2	0.50	1	1	0	0	0	0	0
..........................................................................................TTAAATCCAGAGTTTGGAAAGC...................................................	22	2	2	0.50	1	1	0	0	0	0	0
..........................................................................................TTAAAACCAGAGTTTGGAAAG....................................................	21	1	2	0.50	1	1	0	0	0	0	0
..........................................................................................TTAAAGCCAGAGTTTCGAAAGT...................................................	22	1	2	0.50	1	0	1	0	0	0	0
..........................................................................................TTAAAGCCAGAGTTTGTAAATT...................................................	22	2	2	0.50	1	0	0	1	0	0	0
..........................................................................................TTAATGCCAGAGTTTGGAAAGT...................................................	22	1	2	0.50	1	1	0	0	0	0	0
..........................................................................................TAAAAGCCAGAGTTTGGAAAGT...................................................	22	1	2	0.50	1	1	0	0	0	0	0
.................................................................................AATGTCGTATTAAAGCCAGAGTTTGG........................................................	26	0	2	0.50	1	1	0	0	0	0	0
..................................................TTTCCCCACTCCTTGCTTTAGTA..........................................................................................	23	0	2	0.50	1	0	1	0	0	0	0
..........................................................................................TTAAAGCTTGAGTTTGGAAAG....................................................	21	2	2	0.50	1	0	0	0	1	0	0
..........................................................................................TTAAAGCCATAGTTTGGAAAGT...................................................	22	1	2	0.50	1	0	1	0	0	0	0
..........................................................................................TTAAAGCCGGAGTTTGGAGAGT...................................................	22	2	2	0.50	1	1	0	0	0	0	0
..........................................................................................TTAAACCCAGAGTTTGGAAAG....................................................	21	1	2	0.50	1	1	0	0	0	0	0
..........................................................................................TTAAAGACAGAGTTTGGAAAG....................................................	21	1	2	0.50	1	1	0	0	0	0	0
...........................................................................................TAAAGCCAGAGTTTGAAAAGT...................................................	21	1	2	0.50	1	0	0	1	0	0	0
..........................................................................................TTAAAGACAGAGTTTGGAAAGT...................................................	22	1	2	0.50	1	0	1	0	0	0	0
..........................................................................................TTAAAGCCAGAGTTTGCAAAG....................................................	21	1	2	0.50	1	1	0	0	0	0	0
..........................................................................................TTAAAGCAAGAGTTTGGAAAG....................................................	21	1	2	0.50	1	0	1	0	0	0	0
..........................................................................................TTCAAGCCAGAGTTTGGAAAG....................................................	21	1	2	0.50	1	0	1	0	0	0	0
..........................................................................................TGAAAGCCAGAGTTTGGAAGG....................................................	21	2	2	0.50	1	1	0	0	0	0	0
..........................................................................................TGAAAGCCAGAGTTTGGAAAGTT..................................................	23	1	2	0.50	1	1	0	0	0	0	0
..........................................................................................TTAAATCCAGAGTTTGGAAAG....................................................	21	1	2	0.50	1	1	0	0	0	0	0
..........................................................................................TTGAAGCCAGAGTTTGGAAAG....................................................	21	1	2	0.50	1	1	0	0	0	0	0
..........................................................................................TTAAAGCCAGAGTTTGGAAAGTG..................................................	23	1	2	0.50	1	1	0	0	0	0	0
..........................................................................................TTAAAGCCAGATTTTGGAAAG....................................................	21	1	2	0.50	1	0	1	0	0	0	0
..........................................................................................TTAACGCCAGAGTTTGGAAAGT...................................................	22	1	2	0.50	1	1	0	0	0	0	0
.............................................................................TTGTAATGTCGTATTAAAGCCAGAGT............................................................	26	1	2	0.50	1	1	0	0	0	0	0
...........................................................................................TAGAGCCAGAGTTTGGAAAG....................................................	20	1	2	0.50	1	0	1	0	0	0	0
..........................................................................................ATAAAGCCAGAGTTTGTAAAG....................................................	21	2	2	0.50	1	0	0	0	1	0	0
..........................................................................................TTAAAGCCATAGTTTGGAAAG....................................................	21	1	2	0.50	1	1	0	0	0	0	0
..........................................................................................TTAAAGCCAGAGTTTGAAAA.....................................................	20	1	2	0.50	1	1	0	0	0	0	0
...........................................................................................TAAAGCCAGAGTTTGGAAAGTC..................................................	22	1	2	0.50	1	1	0	0	0	0	0
..........................................................................................TTAAAGCCAGAGATTGGAAAA....................................................	21	2	3	0.33	1	1	0	0	0	0	0
..........................................................................................TTAAAGCCAGAGTTTAGAAA.....................................................	20	1	3	0.33	1	0	1	0	0	0	0
..........................................................................................TTAAAGCCAGAGTTTGGAAG.....................................................	20	1	3	0.33	1	1	0	0	0	0	0
..........................................................................................TTAAAGCCAGAGTTTGGA.......................................................	18	0	3	0.33	1	0	1	0	0	0	0
..........................................................................................TTAAAGCCAGAGTTTGAAAG.....................................................	20	2	4	0.25	1	0	0	1	0	0	0
..........................................................................................TTAAAGCAAGAGTTTGGAAAA....................................................	21	2	4	0.25	1	0	1	0	0	0	0
........................................................................................................................AGTTTCTTAGATCGCCACCC.......................	20	3	5	0.20	1	0	0	0	0	1	0

ACTCTTTGTACTGATGCCTCTCATGGTTTGATCGTGACGTCGAAGTTCGAAAAGGGGTGAGGAACGAAATCATGAATAAAATTACAGCATAATTTCGGTCTCAAACCTTTCAAAACTAAGACGAAGAATTTAGCGGTGGGTTGAATATCATAAGGTTTTTATA **********************************..((((..(((((.((((((..((((...((((((((((.............))))))))))..))))..)))))).)))))..))))....*********************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V108 head	M055 female body
.........................................................TGAGGAACGTGATCATGAATA.....................................................................................	21	2	2	0.50	1	1	0
..........................................................GAGGACCGTGATCATGAATA.....................................................................................	20	3	9	0.22	2	2	0
.........................................................TGAGGACCGTGATCATGAATA.....................................................................................	21	3	5	0.20	1	1	0
.....................................................................................................................................CGGTAGGTTGAAGACCATA...........	19	3	17	0.06	1	0	1

Species	Coordinate	ID	Type	Alignment
droEre2	scaffold_4845:10617537-10617699 -	der_45	confident	TGAGAAACATGACTACGGAGAGTACCA-AA------------CTAGCACTGCAGCTTCAAGCTTTTCCCCACTCCTTGCTTTAGTACTTATTT--TAATGTCGTATTAAAGCCAGAGTTTGGAAAGTTTTGATTCTGCTTCTTAAATC-GCCACCCAACT----T-------A---TAGTATTCCAAAAATAT
droYak3	2R:12723750-12723913 +	dya_41	confident	CGAGAAACCTAACTACGGAGGATACAAAAA------------AATCGCCTGCAGTTTCAAGCTTTTCCCCACTCCTTGCTTTAATACTTATTT--TAACGTCGTATTAAAGCCAGAGTTTGGAAAGTTTTGATTCTGCATTAGAAATC-GCCACCCAACT----T-------T---GATTTTTCTAGAAATAT
droSec2	scaffold_1:14027390-14027550 -	dse_35	candidate-rescued	TGAGAAACTTACCTGCGGGGTATATCAAAA------------ATATCAGTGCAGTTTCAGTCTTTTCCCAACTACATCTATTAATACTTATTT--TAACGTCGTATTAAAGTTGAAGTTTGGAAAATTTTGGTTTTGCATTTGAAATCCGCCACTCAACT----T-------G-------GTTCTAAAATTAT
droSim2	2r:17042543-17042703 -	dsi-mir-991	Known_mirbase	TGAGAAACTTACCTGCGGGGTATATCAAAA------------ATATCACTGCAGTTTCAGGCTTTTCCCAACTACATCTATTAATATTTATTT--TAACGTCGTATTAAAGTTGAAGTTTGGAAAATTTTGGTTTTGCATTTGAAATCCGCCACTCAACT------------------TTCTTCTAAAAATAT
dm3	chr2R:16472668-16472831 -	dme-mir-991	Known_mirbase	CGAGAAAGTTACCTGCGTAGGATATCAAAA------------CTATCACTGCAGTTTCAGGCTTTTCCCAACTACACCTATTAATACATATTT--TAACGTCCTATTAAAGTTGTAGTTTGGAAAGTTTTGGTTTTGCATTAGAAATC-GCCACTCAACT----T-------G---GTTTTTTCTAAAATTAT
droEug1	scf7180000409474:1489130-1489294 +			TAGGGCC----------------AAGAACAGGTCCTATTTTTTAAGCACTGCCTACTCAAACTATTCCGGAGTCT-CG--------CTTAATG--TATTAATGTATTAAAGCCGGCGTTCGGAAAATCTTGACTCTGCACTCGTAGTT-TAAAGCAAGTGATTTTATTATCTGGAAGTTTTTTATTTAAATAT
droBia1	scf7180000302291:2814958-2815087 +			TGAGAAATATATCAACGGGGGACAAAAAAA------------TCAGCACGGCAATCTCAGACTTTTCTC-GCTCCTGGCCTTAGTACTCGATT--TG---ACTTATTAAAGCCGAAAGTGAGAAAATTTTGATTCTGCATCTTACATC---------------------------------------------
droTak1	scf7180000415401:101079-101246 -			TGAGAAGAATATCTACGAGGAATACAA-AA------------GGAGCTCGGCAATTTCAGGCTTTTCCGAAATCTTAGCTTTAATACTTAGTT--TAATGTCGTATTAAAGCTAGATTTCGGGAAATCTTGATTCTGCAGTTAAATTGCAAAGTGAAAATGGTTT-------G---TTTTGTTTTATCAATAT
droEle1	scf7180000491201:737103-737268 -			AAAGAAATACATCTATGAGGCACACGAAAG------------AGAGCACGGCAAAATCTGATTTTTCCAAACTCGTCGCTTTAATAATTAATTTTTAAAATCATATTAAAGCTAGAGTTTGGAAAATTTTGATTCTGCATTTGATACC-GAAGTCAGTAT----T-------G---GTTTTTTTTTTAACTGC
droRho1	scf7180000780104:83248-83411 -			AAAGAAATATATCTACGAGGGATACGCAAG------------TGAGCATGGCAGACTCTGATTTTTTCAGACTCTTCGCTTAAATACTTAATT--TAGTGTCGTATTAAAGCCGGAGTTTGAAAGAATTTGTTTCTGCATTTGTTTTC-GAAATAAAAAC----T-------A---CAAAATTTCCTAAATAT
droFic1	scf7180000454039:1777221-1777391 -			AAAGAAATATTTTACTGAGAAACGTAAAAA------------CAAGCACGGTAGACTCGGGCTTTTCGG-ATCCCGGGCTTTACTACCGAATA--TAGTGCCGTAATAAAGCCGGAGATTGGAAAATTTCGGATCTGAATTTAAAATC-CAAGTAAAAAAAATATATCA---T---AAATGTTTTAGTAGTAT

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droEre2

TGAGAAACATGACTACGGAGAGTACCA-AA------------CTAGCACTGCAGCTTCAAGCTTTTCCCCACTCCTTGCTTTAGTACTTATTT--TAATGTCGTATTAAAGCCAGAGTTTGGAAAGTTTTGATTCTGCTTCTTAAATC-GCCACCCAACT----T-------A---TAGTATTCCAAAAATAT	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
.........................................................................................................TTAAAGCCAGAGTTTGGAAAGT..................................................................	22	2	508.50	1017	42	3	10	3	882	77	0
.........................................................................................................TTAAAGCCAGAGTTTGGAAAG...................................................................	21	2	375.50	751	9	0	3	1	659	79	0
.........................................................................................................TTAAAGCCAGAGTTTGGAAA....................................................................	20	2	101.00	202	4	0	1	0	177	20	0
.........................................................................................................TTAAAGCCAGAGTTTGGAAAGTA.................................................................	23	2	23.50	47	2	0	1	0	41	3	0
.........................................................................................................TTAAAGCCAGAGTTTGGAAAGTT.................................................................	23	2	15.00	30	2	0	0	0	27	1	0
.........................................................................................................TTAAAGCCAGAGTTTGGAAAGA..................................................................	22	2	11.00	22	1	0	0	0	20	1	0
.........................................................................................................TTAAAGCCAGAGTTTGGAAAA...................................................................	21	3	8.67	26	0	0	0	0	24	2	0
.........................................................................................................TTAAAGCCAGAGTTTGGAA.....................................................................	19	3	8.00	24	1	0	0	1	22	0	0
.........................................................................................................TTAAAGCCAGAGTTTGGAAAGTAA................................................................	24	2	6.50	13	2	0	1	0	9	1	0
...............................................................TTTCCCCACTCCTTGCTTTAGT............................................................................................................	22	2	5.00	10	3	0	1	0	6	0	0
.........................................................................................................TTAAAGCCAGAGTTTGGAAAGTAAA...............................................................	25	2	4.00	8	3	0	0	0	5	0	0
.........................................................................................................TTAAAGCCAGAGTTTGGAAAT...................................................................	21	2	3.50	7	0	0	0	0	7	0	0
...............................................................TTTCCCCACTCCTTGCTTTAG.............................................................................................................	21	2	3.50	7	2	0	0	0	4	1	0
..........................................................................................................TAAAGCCAGAGTTTGGAAAGT..................................................................	21	2	2.00	4	2	0	0	0	2	0	0
..........................................................................................................TAAAGCCAGAGTTTGGAAAG...................................................................	20	2	2.00	4	2	0	0	0	1	1	0
.........................................................................................................TTAAAGCCAGAGTTTGGAAAAA..................................................................	22	3	1.33	4	0	0	0	0	3	1	0
.........................................................................................................TTAAAGCCAGAGTTTGGAAAGAA.................................................................	23	2	1.00	2	0	0	0	0	1	1	0
.........................................................................................................TTAAAGCCAGAGTTTGGAAAGG..................................................................	22	2	1.00	2	0	0	0	0	2	0	0
.........................................................................................................TTAAAGCCAGAGTTTGGAAAGC..................................................................	22	2	1.00	2	0	0	0	0	2	0	0
.........................................................................................................TTAAAGCCAGAGTTTGGAAAGTTA................................................................	24	2	1.00	2	0	0	0	0	2	0	0
........................................................................................................ATTAAAGCCAGAGTTTGGAAA....................................................................	21	2	1.00	2	0	0	0	0	2	0	0
.........................................................................................................TTAAAGCCAGAGTTTGGAAT....................................................................	20	3	0.67	2	0	0	0	0	2	0	0
...............................................................TTTCCCCACTCCTTGCTTTAGTAAA.........................................................................................................	25	2	0.50	1	1	0	0	0	0	0	0
................................................................................................AATGTCGTATTAAAGCCAGAGTTTGG.......................................................................	26	2	0.50	1	0	0	0	0	1	0	0
...............................................................TTTCCCCACTCCTTGCTTTAGTA...........................................................................................................	23	2	0.50	1	0	0	0	0	0	1	0
.........................................................................................................TTAAAGCCAGAGTTTGGAAAGTG.................................................................	23	2	0.50	1	0	0	0	0	1	0	0
..........................................................................................................TAAAGCCAGAGTTTGGAAAGTC.................................................................	22	2	0.50	1	0	0	0	0	1	0	0
.........................................................................................................TTAAAGCCAGAGTTTGGAAG....................................................................	20	3	0.33	1	0	0	0	0	1	0	0
.........................................................................................................TTAAAGCCAGAGTTTGGA......................................................................	18	3	0.33	1	0	0	0	0	0	1	0

droYak3

CGAGAAACCTAACTACGGAGGATACAAAAA------------AATCGCCTGCAGTTTCAAGCTTTTCCCCACTCCTTGCTTTAATACTTATTT--TAACGTCGTATTAAAGCCAGAGTTTGGAAAGTTTTGATTCTGCATTAGAAATC-GCCACCCAACT----T-------T---GATTTTTCTAGAAATAT	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
.........................................................................................................TTAAAGCCAGAGTTTGGAAAGT..................................................................	22	1	268.00	268	0	13	21	5	0	0	229	0	0	0	0
.........................................................................................................TTAAAGCCAGAGTTTGGAAAG...................................................................	21	1	253.00	253	8	2	1	0	0	1	241	0	0	0	0
.........................................................................................................TTAAAGCCAGAGTTTGGAAA....................................................................	20	1	101.00	101	2	3	1	0	1	2	92	0	0	0	0
.........................................................................................................TTAAAGCCAGAGTTTGGAAAGTA.................................................................	23	1	14.00	14	0	0	0	0	0	0	14	0	0	0	0
...............................................................TTTCCCCACTCCTTGCTTTAAT............................................................................................................	22	1	12.00	12	0	10	2	0	0	0	0	0	0	0	0
.........................................................................................................TTAAAGCCAGAGTTTGGAAAGTT.................................................................	23	1	9.00	9	0	0	0	0	0	0	9	0	0	0	0
.........................................................................................................TTAAAGCCAGAGTTTGGAAAGA..................................................................	22	1	7.00	7	0	0	0	0	0	0	7	0	0	0	0
.........................................................................................................TTAAAGCCAGAGTTTGGAAAA...................................................................	21	3	6.67	20	0	0	0	0	0	0	20	0	0	0	0
.........................................................................................................TTAAAGCCAGAGTTTGGAAAGTAAA...............................................................	25	1	4.00	4	0	0	0	0	0	0	4	0	0	0	0
...............................................................TTTCCCCACTCCTTGCTTTAA.............................................................................................................	21	1	4.00	4	1	2	1	0	0	0	0	0	0	0	0
.........................................................................................................TTAAAGCCAGAGTTTGGAAAT...................................................................	21	1	4.00	4	0	0	0	0	0	0	4	0	0	0	0
.........................................................................................................TTAAAGCCAGAGTTTGGAAAGTAA................................................................	24	1	4.00	4	0	0	0	0	0	0	4	0	0	0	0
...............................................................TTTCCCCACTCCTTGCTTTAATA...........................................................................................................	23	1	3.00	3	0	2	0	1	0	0	0	0	0	0	0
..........................................................................................................TAAAGCCAGAGTTTGGAAAGT..................................................................	21	1	3.00	3	0	2	0	0	0	0	1	0	0	0	0
.........................................................................................................TTAAAGCCAGAGTTTGGAAAGC..................................................................	22	1	3.00	3	0	0	3	0	0	0	0	0	0	0	0
...............................................................TTTCCCCACTCCTTGCTTTA..............................................................................................................	20	1	3.00	3	0	2	0	0	0	0	1	0	0	0	0
................................................................TTCCCCACTCCTTGCTTTAAT............................................................................................................	21	1	2.00	2	0	2	0	0	0	0	0	0	0	0	0
.........................................................................................................TTAAAGCCAGAGTTTGGAAAGAA.................................................................	23	1	2.00	2	0	0	0	0	0	0	2	0	0	0	0
.........................................................................................................TTAAAGCCAGAGTTTGGAA.....................................................................	19	3	1.67	5	0	0	0	0	0	0	5	0	0	0	0
............................................TCGCCTGCAGTTTCAAGCT..................................................................................................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0
.........................................................................................................TTAAAGCCAGAGTTTGGAAAGG..................................................................	22	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.................................................................TCCCCACTCCTTGCTTTAAT............................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0
..........................................................................................................TAAAGCCAGAGTTTGGAAAG...................................................................	20	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0
.........................................................................................................TTAAAGCCAGAGTTTGGAAT....................................................................	20	3	0.33	1	0	0	0	0	0	0	1	0	0	0	0
.........................................................................................................TTAAAGCCAGAGTTTGGAAG....................................................................	20	3	0.33	1	0	0	0	0	0	0	1	0	0	0	0
.........................................................................................................TTAAAGCCAGAGTTTGGAT.....................................................................	19	3	0.33	1	0	1	0	0	0	0	0	0	0	0	0
.........................................................................................................TTAAAGCCAGAGTTTGGAAAGAAA................................................................	24	3	0.33	1	0	0	0	0	0	0	1	0	0	0	0

droSec2

TGAGAAACTTACCTGCGGGGTATATCAAAA------------ATATCAGTGCAGTTTCAGTCTTTTCCCAACTACATCTATTAATACTTATTT--TAACGTCGTATTAAAGTTGAAGTTTGGAAAATTTTGGTTTTGCATTTGAAATCCGCCACTCAACT----T-------G-------GTTCTAAAATTAT	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
.........................................................................................................TTAAAGTTGAAGTTTGGAAAA...................................................................	21	1	622.00	622	1	565	32	24
.........................................................................................................TTAAAGTTGAAGTTTGGAAAAT..................................................................	22	1	490.00	490	10	411	48	21
.........................................................................................................TTAAAGTTGAAGTTTGGAAA....................................................................	20	1	470.00	470	8	412	35	15
.........................................................................................................TTAAAGTTGAAGTTTGGAAAAA..................................................................	22	1	106.00	106	0	101	1	4
.........................................................................................................TTAAAGTTGAAGTTTGGAAAAAA.................................................................	23	1	53.00	53	0	52	0	1
.........................................................................................................TTAAAGTTGAAGTTTGGAAAATA.................................................................	23	1	52.00	52	0	49	1	2
........................................................................................................ATTAAAGTTGAAGTTTGGAAAA...................................................................	22	1	51.00	51	0	49	2	0
.........................................................................................................TTAAAGTTGAAGTTTGGAA.....................................................................	19	1	50.00	50	0	39	7	4
.........................................................................................................TTAAAGTTGAAGTTTGGAAAATAA................................................................	24	1	45.00	45	1	42	0	2
.........................................................................................................TTAAAGTTGAAGTTTGGAAAATAAA...............................................................	25	1	23.00	23	0	23	0	0
........................................................................................................ATTAAAGTTGAAGTTTGGAAA....................................................................	21	1	15.00	15	0	13	1	1
.........................................................................................................TTAAAGTTGAAGTTTGGAAAATT.................................................................	23	1	10.00	10	0	10	0	0
.........................................................................................................TTAAAGTTGAAGTTTGGAAAT...................................................................	21	1	7.00	7	0	6	0	1
.........................................................................................................TTAAAGTTGAAGTTTGGAAT....................................................................	20	1	6.00	6	0	6	0	0
..........................................................................................................TAAAGTTGAAGTTTGGAAAAT..................................................................	21	1	6.00	6	3	2	1	0
.........................................................................................................TTAAAGTTGAAGTTTGGAAAAAAA................................................................	24	4	5.50	22	0	21	0	1
.........................................................................................................TTAAAGTTGAAGTTTGGAAATA..................................................................	22	1	5.00	5	0	4	0	1
.........................................................................................................TTAAAGTTGAAGTTTGGAAAATTT................................................................	24	1	5.00	5	0	5	0	0
.........................................................................................................TTAAAGTTGAAGTTTGGA......................................................................	18	1	4.00	4	0	0	1	3
.........................................................................................................TTAAAGTTGAAGTTTGGAT.....................................................................	19	1	3.00	3	0	3	0	0
.........................................................................................................TTAAAGTTGAAGTTTGGAAAATG.................................................................	23	1	3.00	3	0	3	0	0
..........................................................................................................TAAAGTTGAAGTTTGGAAA....................................................................	19	1	2.00	2	0	2	0	0
.........................................................................................................TTAAAGTTGAAGTTTGGAAAATTAAA..............................................................	26	1	2.00	2	0	2	0	0
........................................................................................................ATTAAAGTTGAAGTTTGGAAAAT..................................................................	23	1	2.00	2	0	2	0	0
...........................................................................................................AAAGTTGAAGTTTGGAAA....................................................................	18	1	2.00	2	1	1	0	0
........................................................................................................ATTAAAGTTGAAGTTTGGAA.....................................................................	20	1	2.00	2	0	2	0	0
.........................................................................................................TTAAAGTTGAAGTTTGGAAATAA.................................................................	23	4	1.75	7	0	7	0	0
.........................................................................................................TTAAAGTTGAAGTTTGGAAAATTAA...............................................................	25	1	1.00	1	0	1	0	0
...............................................................TTTCCCAACTACATCTATTAAT............................................................................................................	22	1	1.00	1	0	1	0	0
........................................................................................................ATTAAAGTTGAAGTTTGGAAAATCA................................................................	25	1	1.00	1	0	1	0	0
.........................................................................................................TTAAAGTTGAAGTTTGGAC.....................................................................	19	1	1.00	1	0	1	0	0
.........................................................................................................TTAAAGTTGAAGTTTGGAAATG..................................................................	22	1	1.00	1	0	0	0	1
.........................................................................................................TTAAAGTTGAAGTTTGGAAAG...................................................................	21	1	1.00	1	0	1	0	0
..........................................................................................................TAAAGTTGAAGTTTGGAAAA...................................................................	20	1	1.00	1	0	1	0	0
........................................................................................................ATTAAAGTTGAAGTTTGGAAAAA..................................................................	23	1	1.00	1	0	1	0	0
.........................................................................................................TTAAAGTTGAAGTTTGGAAAAG..................................................................	22	1	1.00	1	0	1	0	0
........................................................................................................ATTAAAGTTGAAGTTTGGAAAATA.................................................................	24	1	1.00	1	0	1	0	0
...........................................................................................................AAAGTTGAAGTTTGGAAAAT..................................................................	20	1	1.00	1	0	0	0	1
.........................................................................................................TTAAAGTTGAAGTTTGGAAAAC..................................................................	22	1	1.00	1	0	1	0	0
.........................................................................................................TTAAAGTTGAAGTTTGGAATT...................................................................	21	2	0.50	1	0	0	0	1

droSim2

TGAGAAACTTACCTGCGGGGTATATCAAAA------------ATATCACTGCAGTTTCAGGCTTTTCCCAACTACATCTATTAATATTTATTT--TAACGTCGTATTAAAGTTGAAGTTTGGAAAATTTTGGTTTTGCATTTGAAATCCGCCACTCAACT------------------TTCTTCTAAAAATAT	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
.........................................................................................................TTAAAGTTGAAGTTTGGAAAAT..................................................................	22	1	12448.00	12448	2	343	44	5	574	10	188	1	201	48	84	9	25	10871	9	3	31
.........................................................................................................TTAAAGTTGAAGTTTGGAAAA...................................................................	21	1	2491.00	2491	0	185	9	1	270	2	155	1	67	6	42	6	6	1728	3	0	10
.........................................................................................................TTAAAGTTGAAGTTTGGAAA....................................................................	20	1	1409.00	1409	1	76	8	2	104	1	187	0	71	3	33	8	0	910	1	0	4
........................................................................................................ATTAAAGTTGAAGTTTGGAAAA...................................................................	22	1	713.00	713	0	4	6	0	83	2	1	0	16	5	8	1	0	583	1	0	3
.........................................................................................................TTAAAGTTGAAGTTTGGAAAATA.................................................................	23	1	705.00	705	0	87	2	0	0	0	7	0	18	1	0	0	0	590	0	0	0
.........................................................................................................TTAAAGTTGAAGTTTGGAAAATAA................................................................	24	1	642.00	642	0	0	0	0	0	0	0	0	0	0	1	0	2	639	0	0	0
................................................................TTCCCAACTACATCTATTAATAT..........................................................................................................	23	1	436.00	436	0	1	0	0	22	0	1	1	1	0	0	0	2	408	0	0	0
...............................................................TTTCCCAACTACATCTATTAAT............................................................................................................	22	1	372.00	372	0	8	1	0	11	0	1	1	0	0	0	0	3	347	0	0	0
.........................................................................................................TTAAAGTTGAAGTTTGGAA.....................................................................	19	1	336.00	336	0	3	0	1	96	0	80	0	9	3	17	1	0	126	0	0	0
.........................................................................................................TTAAAGTTGAAGTTTGGAAAAA..................................................................	22	1	313.00	313	0	37	0	0	0	0	10	0	2	0	7	1	1	255	0	0	0
........................................................................................................ATTAAAGTTGAAGTTTGGAAA....................................................................	21	1	279.00	279	0	4	2	0	25	0	3	0	7	1	5	0	0	231	0	0	1
.........................................................................................................TTAAAGTTGAAGTTTGGAAAATT.................................................................	23	1	277.00	277	0	23	1	0	0	0	2	0	0	0	0	0	0	251	0	0	0
.........................................................................................................TTAAAGTTGAAGTTTGGAAAAAA.................................................................	23	1	233.00	233	0	14	0	0	0	0	2	0	1	0	3	1	0	212	0	0	0
...............................................................TTTCCCAACTACATCTATTAATA...........................................................................................................	23	1	198.00	198	0	0	0	0	3	0	0	0	0	0	0	0	0	195	0	0	0
.........................................................................................................TTAAAGTTGAAGTTTGGA......................................................................	18	1	103.00	103	0	2	0	0	72	1	14	0	3	0	5	0	0	6	0	0	0
.........................................................................................................TTAAAGTTGAAGTTTGGAAAATAAA...............................................................	25	1	98.00	98	0	2	0	0	0	0	2	0	3	0	0	0	0	91	0	0	0
................................................................TTCCCAACTACATCTATTAAT............................................................................................................	21	1	83.00	83	0	0	0	0	6	0	0	0	0	0	0	0	1	76	0	0	0
................................................................TTCCCAACTACATCTATTAATA...........................................................................................................	22	1	76.00	76	0	0	0	0	11	1	0	0	0	0	0	0	0	64	0	0	0
.........................................................................................................TTAAAGTTGAAGTTTGGAAAATTA................................................................	24	1	72.00	72	0	1	0	0	0	0	0	0	0	0	0	0	0	71	0	0	0
.........................................................................................................TTAAAGTTGAAGTTTGGAAAAAAA................................................................	24	3	61.00	183	0	5	0	0	0	0	2	0	0	0	2	0	0	174	0	0	0
...............................................................TTTCCCAACTACATCTATTAA.............................................................................................................	21	1	60.00	60	0	1	0	0	10	0	0	0	0	0	0	0	0	49	0	0	0
........................................................................................................ATTAAAGTTGAAGTTTGGAA.....................................................................	20	1	51.00	51	0	0	0	0	8	0	4	0	1	0	2	0	0	36	0	0	0
..........................................................................................................TAAAGTTGAAGTTTGGAAAAT..................................................................	21	1	49.00	49	0	1	0	0	11	0	1	0	0	0	0	0	0	35	0	0	1
.........................................................................................................TTAAAGTTGAAGTTTGGAAT....................................................................	20	1	48.00	48	1	0	0	0	0	0	1	0	0	0	0	0	0	46	0	0	0
.........................................................................................................TTAAAGTTGAAGTTTGGAAAATTT................................................................	24	1	42.00	42	0	0	0	0	0	0	0	0	0	0	0	0	0	42	0	0	0
................................................................TTCCCAACTACATCTATTAATAA..........................................................................................................	23	1	40.00	40	0	0	0	0	0	0	0	0	0	0	0	0	0	40	0	0	0
.........................................................................................................TTAAAGTTGAAGTTTGGAAAT...................................................................	21	1	35.00	35	0	0	0	0	0	0	0	0	0	0	1	0	0	34	0	0	0
...............................................................TTTCCCAACTACATCTATTAATAA..........................................................................................................	24	1	34.00	34	0	0	0	0	0	0	0	0	0	0	0	0	0	34	0	0	0
.........................................................................................................TTAAAGTTGAAGTTTGGAT.....................................................................	19	1	33.00	33	0	3	0	0	0	0	1	0	0	0	1	0	0	28	0	0	0
...............................................................TTTCCCAACTACATCTATTA..............................................................................................................	20	1	26.00	26	0	0	0	0	16	0	0	0	0	0	0	0	0	10	0	0	0
........................................................................................................ATTAAAGTTGAAGTTTGGA......................................................................	19	1	23.00	23	0	0	0	0	15	0	0	0	0	0	2	0	0	6	0	0	0
.........................................................................................................TTAAAGTTGAAGTTTGGAAAAC..................................................................	22	1	22.00	22	0	1	0	0	0	0	0	0	0	0	1	0	0	20	0	0	0
..........................................................................................................TAAAGTTGAAGTTTGGAAAA...................................................................	20	1	21.00	21	0	0	2	0	11	0	0	0	0	0	0	0	0	8	0	0	0
........................................................................................................ATTAAAGTTGAAGTTTGGAAAT...................................................................	22	1	18.00	18	0	0	0	0	0	0	0	0	0	0	0	0	0	18	0	0	0
...............................................................TTTCCCAACTACATCTAT................................................................................................................	18	1	16.00	16	0	0	0	0	16	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................TAAAGTTGAAGTTTGGAAAATA.................................................................	22	1	16.00	16	0	0	0	0	0	0	1	0	0	0	0	0	0	15	0	0	0
........................................................................................................ATTAAAGTTGAAGTTTGGAAAAT..................................................................	23	1	14.00	14	0	0	0	0	0	0	0	0	0	0	0	0	0	14	0	0	0
........................................................................................................ATTAAAGTTGAAGTTTGGAAAAA..................................................................	23	1	13.00	13	0	0	0	0	0	0	0	0	0	0	0	0	0	13	0	0	0
...........................................................................................................AAAGTTGAAGTTTGGAAAAT..................................................................	20	1	11.00	11	0	0	0	0	1	0	0	0	1	0	0	0	0	9	0	0	0
................................................................TTCCCAACTACATCTATTAATATA.........................................................................................................	24	1	11.00	11	0	0	0	0	0	0	0	0	0	0	0	0	0	11	0	0	0
.........................................................................................................TTAAAGTTGAAGTTTGGAAAATTAA...............................................................	25	1	11.00	11	0	0	0	0	0	0	0	0	1	0	0	0	0	10	0	0	0
.........................................................................................................TTAAAGTTGAAGTTTGGAAAATC.................................................................	23	1	10.00	10	0	1	0	0	0	0	0	0	0	0	0	0	0	9	0	0	0
................................................................TTCCCAACTACATCTATT...............................................................................................................	18	1	10.00	10	0	0	0	0	10	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................ATTAAAGTTGAAGTTTGGAAT....................................................................	21	1	10.00	10	0	0	0	0	0	0	0	0	0	0	0	0	0	10	0	0	0
................................................................TTCCCAACTACATCTATTAA.............................................................................................................	20	1	9.00	9	0	0	0	0	3	0	0	0	0	0	0	0	0	6	0	0	0
........................................................................................................ATTAAAGTTGAAGTTTGGAAAAAA.................................................................	24	1	8.00	8	0	0	0	0	0	0	0	0	0	0	0	0	0	8	0	0	0
..........................................................................................................TAAAGTTGAAGTTTGGAAAATAA................................................................	23	1	8.00	8	0	0	0	0	0	0	0	0	0	0	0	0	0	8	0	0	0
................................................................TTCCCAACTACATCTATTA..............................................................................................................	19	1	8.00	8	0	0	0	0	8	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................ATTAAAGTTGAAGTTTGG.......................................................................	18	1	7.00	7	0	0	0	0	5	0	1	0	0	0	1	0	0	0	0	0	0
...............................................................TTTCCCAACTACATCTATTAATT...........................................................................................................	23	1	7.00	7	0	0	0	0	0	0	0	0	0	0	0	0	0	7	0	0	0
...............................................................TTTCCCAACTACATCTATTAAA............................................................................................................	22	1	7.00	7	0	0	0	0	0	0	0	0	0	0	0	0	0	7	0	0	0
.........................................................................................................TTAAAGTTGAAGTTTGGATT....................................................................	20	5	6.20	31	0	1	0	0	0	0	0	0	0	0	0	0	0	30	0	0	0
..........................................................................................................TAAAGTTGAAGTTTGGAAAATT.................................................................	22	1	6.00	6	0	0	0	0	0	0	0	0	0	0	0	0	0	6	0	0	0
.........................................................................................................TTAAAGTTGAAGTTTGGAAAATTTT...............................................................	25	1	6.00	6	0	0	0	0	0	0	0	0	0	0	0	0	0	6	0	0	0
.........................................................................................................TTAAAGTTGAAGTTTGGAAAAG..................................................................	22	1	6.00	6	0	0	0	0	0	0	0	0	0	0	0	0	0	6	0	0	0
...........................................................................................................AAAGTTGAAGTTTGGAAAA...................................................................	19	1	5.00	5	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	0	0
..............................................................................................................GTTGAAGTTTGGAAA....................................................................	15	1	4.00	4	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0
.........................................................................................................TTAAAGTTGAAGTTTGGAAATAA.................................................................	23	3	3.67	11	0	0	0	0	0	0	0	0	0	0	0	0	0	11	0	0	0
.........................................................................................................TTAAAGTTGAAGTTTGGAAAG...................................................................	21	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0
...............................................................TTTCCCAACTACATCTATTAATAT..........................................................................................................	24	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0
...............................................................TTTCCCAACTACATCTATT...............................................................................................................	19	1	3.00	3	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................ATTAAAGTTGAAGTTTGGAAAC...................................................................	22	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0
................................................................TTCCCAACTACATCTATTAATAAA.........................................................................................................	24	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0
.........................................................................................................TTAAAGTTGAAGTTTGGAAAATG.................................................................	23	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0
.........................................................................................................TTAAAGTTGAAGTTTGGAAATA..................................................................	22	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0
..............................................................................................................GTTGAAGTTTGGAAAA...................................................................	16	1	3.00	3	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0
............................................................................................................AAGTTGAAGTTTGGAAAAT..................................................................	19	1	3.00	3	0	0	0	0	0	0	0	0	0	0	2	0	0	1	0	0	0
.........................................................................................................TTAAAGTTGAAGTTTGG.......................................................................	17	1	3.00	3	0	0	0	0	0	0	1	0	0	0	2	0	0	0	0	0	0
................................................................TTCCCAACTACATCTATTAATAAAA........................................................................................................	25	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0
.........................................................................................................TTAAAGTTGAAGTTTGGAAAATTTTT..............................................................	26	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0
........................................................................................................ATTAAAGTTGAAGTTTGGAT.....................................................................	20	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0
..........................................................................................................TAAAGTTGAAGTTTGGAAA....................................................................	19	1	3.00	3	0	0	0	0	1	0	0	0	0	0	0	0	0	2	0	0	0
...........................................................................................................AAAGTTGAAGTTTGGAAAATAA................................................................	22	2	2.50	5	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	0	0
........................................................................................................ATTAAAGTTGAAGTTTGGAAAAAAA................................................................	25	2	2.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0
........................................................................................................ATTAAAGTTGAAGTTTGGAAAG...................................................................	22	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0
.........................................................................................................TTAAAGTTGAAGTTTGGAAAC...................................................................	21	1	2.00	2	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
........................................................................................................ATTAAAGTTGAAGTTTGGT......................................................................	19	1	2.00	2	0	0	0	0	0	0	0	0	0	0	1	0	0	1	0	0	0
................................................................TTCCCAACTACATCTATTAATATTTA.......................................................................................................	26	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0
.........................................................................................................TTAAAGTTGAAGTTTGGAATT...................................................................	21	2	2.00	4	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0
.........................................................................................................TTAAAGTTGAAGTTTGGAAAATTAAA..............................................................	26	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0
........................................................................................................ATTAAAGTTGAAGTTTGGAAAATA.................................................................	24	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0
................................................................TTCCCAACTACATCTATTAATATT.........................................................................................................	24	1	2.00	2	0	0	0	0	1	0	0	0	0	0	0	0	0	1	0	0	0
............................................................................................................AAGTTGAAGTTTGGAAAATTTA...............................................................	22	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0
..............................................................................................................GTTGAAGTTTGGAAAAT..................................................................	17	1	2.00	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
.........................................................................................................TTAAAGTTGAAGTTTG........................................................................	16	1	2.00	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
...................................................................CCAACTACATCTATTAATAT..........................................................................................................	20	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0
..........................................................................................................TAAAGTTGAAGTTTGGAA.....................................................................	18	1	2.00	2	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................TTAAAGTTGAAGTTTGGATG....................................................................	20	2	1.50	3	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0
................................................................TTCCCAACTACATCTATTAATACA.........................................................................................................	24	1	1.00	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................TAAAGTTGAAGTTTGGAAAAA..................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
.............................................................................................................AGTTGAAGTTTGGAAAAT..................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.................................................................TCCCAACTACATCTATTAA.............................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
........................................................................................................ATTAAAGTTGAAGTTTGGAG.....................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
...........................................................................................................AAAGTTGAAGTTTGGAAA....................................................................	18	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
........................................................................................................ATTAAAGTTGAAGTTTGGAAAATAA................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
................................................................TTCCCAACTACATCTATTAATATAA........................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
.........................................................................................................TTAAAGTTGAAGTTTGGT......................................................................	18	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
.................................................................TCCCAACTACATCTATTAATAT..........................................................................................................	22	1	1.00	1	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0
................................................................TTCCCAACTACATCTATTAATATTT........................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
.........................................................................................................TTAAAGTTGAAGTTTGGAAATC..................................................................	22	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
.........................................................................................................TTAAAGTTGAAGTTTGGAAAATCAA...............................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
.........................................................................................................TTAAAGTTGAAGTTTGGAAAATGA................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
.........................................................................................................TTAAAGTTGAAGTTTGGAAAACA.................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
..........................................................................................................TAAAGTTGAAGTTTGGAAAATTA................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
................................................................TTCCCAACTACATCTATTAATATTTAT......................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
...............................................................TTTCCCAACTACATCTATTAATATTTA.......................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
.........................................................................................................TTAAAGTTGAAGTTTGGAATG...................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
...............................................................................................................TTGAAGTTTGGAAAAT..................................................................	16	2	1.00	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
...................................................................CCAACTACATCTATTAATA...........................................................................................................	19	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0

dm3

CGAGAAAGTTACCTGCGTAGGATATCAAAA------------CTATCACTGCAGTTTCAGGCTTTTCCCAACTACACCTATTAATACATATTT--TAACGTCCTATTAAAGTTGTAGTTTGGAAAGTTTTGGTTTTGCATTAGAAATC-GCCACTCAACT----T-------G---GTTTTTTCTAAAATTAT	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
.........................................................................................................TTAAAGTTGTAGTTTGGAAAGT..................................................................	22	1	23275.00	23275	0	0	0	0	0	0	0	0	0	0	0	21	1	0	0	0	0	0	0	0	2	1	2	69	0	0	1	0	2	0	0	0	0	0	0	4	22	4	1	6	7	5	17	2	10	0	16	4	15	6	8	4	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	1	1	0	6	0	6	1	1	0	0	3	2	13	1	2	89	0	0	27	0	0	15	24	0	2	0	0	3	0	2	4	0	82	2	2	0	16	0	0	1	0	1	0	1	0	0	0	2	0	5	1	2	1	0	1	0	0	0	2	0	3	2	8	13	5	3	26	24	13	32	22	79	7	13	16	13	0	0	0	0	0	0	0	0	1	0	0	1	0	0	3	1	0	0	12	36	1	2	0	4	0	40	0	3	8	0	0	0	386	21	2229	11	17	0	0	709	1	1566	77	1	6	0	0	0	23	16	0	0	16	1	0	10	1	0	0	32	136	215	319	46	224	241	811	42	285	94	335	4	31	17	11	0	0	0	0	7	3	0	2	1	1	7	0	6	54	0	1	16	1	45	0	0	14	0	3	0	4	1	0	2	0	38	1	0	561	84	3	0	2	25	145	74	292	66	349	90	417	0	1	1345	5	1	4	8	1	5	286	58	99	35	5	3	52	127	24	48	140	372	164	214	4	6	32	39	84	2	49	35	1501	0	3	6535	371	68	2	4	54	5	130	8	34	28	40	21	4	4	14	2	0
.........................................................................................................TTAAAGTTGTAGTTTGGAAAG...................................................................	21	1	7647.00	7647	0	0	0	0	0	1	0	0	0	0	0	4	0	0	0	0	0	0	0	0	2	3	1	34	0	0	0	0	0	0	0	0	0	0	4	1	7	3	2	3	5	2	7	3	4	2	8	1	6	1	7	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	20	0	0	16	0	0	0	1	0	0	0	0	0	0	2	0	0	13	1	0	1	12	0	1	0	0	0	0	0	0	0	0	0	0	0	1	1	0	1	0	0	0	0	0	0	0	1	0	0	3	5	13	12	6	19	11	40	0	17	0	5	0	0	0	0	0	0	0	0	0	0	0	0	5	0	1	1	0	0	5	2	1	0	0	3	2	5	0	0	0	0	0	0	193	12	1102	6	1	0	0	288	1	509	25	0	0	0	0	0	6	7	5	0	2	3	0	16	0	0	0	14	84	171	246	6	38	39	131	6	40	19	33	0	3	0	0	0	0	0	0	5	1	0	0	0	0	0	0	0	75	0	0	11	0	5	0	0	1	0	0	0	0	0	0	0	1	11	1	0	173	17	1	0	0	10	56	46	190	30	203	45	213	0	1	167	0	1	3	3	0	1	28	11	98	7	0	1	39	81	17	44	158	62	357	287	0	1	21	27	72	0	17	5	297	0	0	971	90	10	0	0	62	4	186	10	16	19	22	6	0	0	2	0	0
.........................................................................................................TTAAAGTTGTAGTTTGGAAA....................................................................	20	1	2863.00	2863	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	11	0	0	0	0	0	0	0	0	0	0	3	1	5	0	0	0	1	1	3	0	3	1	3	0	1	2	1	1	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	6	4	6	5	7	1	5	8	4	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	3	0	1	0	0	0	0	0	0	0	0	0	0	0	65	1	319	0	0	0	0	75	0	152	2	0	0	0	0	0	0	3	0	0	1	0	0	0	0	1	0	6	14	77	87	6	8	7	31	2	10	6	8	0	0	0	0	0	0	0	0	0	1	0	0	0	0	1	1	0	31	0	0	4	0	6	0	0	6	0	0	0	0	0	0	0	0	5	0	2	73	7	0	0	0	5	34	18	65	17	98	21	83	0	0	42	0	0	0	0	0	0	3	1	26	0	0	1	13	33	5	17	98	34	162	160	0	0	12	14	54	0	15	0	118	0	0	345	42	5	1	0	34	4	131	4	8	10	10	0	0	0	0	0	0
.........................................................................................................TTAAAGTTGTAGTTTGGAA.....................................................................	19	1	709.00	709	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	2	0	1	0	0	0	1	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	3	0	2	4	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	14	0	67	0	0	0	0	19	0	41	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	8	38	43	1	3	2	7	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	7	0	0	1	0	8	0	1	0	0	0	0	0	0	0	0	0	4	0	0	23	2	0	0	0	4	6	5	12	2	24	6	17	0	0	11	0	0	0	0	0	0	0	1	2	0	0	0	5	10	0	2	27	15	19	40	0	0	2	3	9	0	4	0	31	0	0	64	8	0	0	0	4	0	39	1	0	1	4	1	0	0	0	0	0
.........................................................................................................TTAAAGTTGTAGTTTGGAAAGTA.................................................................	23	1	656.00	656	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	43	0	124	0	0	0	0	11	0	112	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	2	4	1	0	1	0	3	0	3	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	2	0	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	10	0	0	0	0	0	2	1	0	1	2	0	7	0	0	17	0	0	0	0	0	0	0	0	8	0	0	0	0	2	0	0	7	3	63	34	0	0	2	1	1	0	1	0	29	0	0	104	2	0	0	0	10	0	16	0	1	1	2	0	0	0	0	0	0
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...........................................................................................................AAAGTTGTAGTTTGGAAAGTT.................................................................	21	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................AAGTTGTAGTTTGGAAAG...................................................................	18	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................TTAAAGTTGTAGTTTGGAAAGTAAC...............................................................	25	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droEug1

TAGGGCC----------------AAGAACAGGTCCTATTTTTTAAGCACTGCCTACTCAAACTATTCCGGAGTCT-CG--------CTTAATG--TATTAATGTATTAAAGCCGGCGTTCGGAAAATCTTGACTCTGCACTCGTAGTT-TAAAGCAAGTGATTTTATTATCTGGAAGTTTTTTATTTAAATAT	Size	Hit Count	Total Norm	Total
No Reads

droBia1

TGAGAAATATATCAACGGGGGACAAAAAAA------------TCAGCACGGCAATCTCAGACTTTTCTC-GCTCCTGGCCTTAGTACTCGATT--TG---ACTTATTAAAGCCGAAAGTGAGAAAATTTTGATTCTGCATCTTACATC---------------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droTak1

TGAGAAGAATATCTACGAGGAATACAA-AA------------GGAGCTCGGCAATTTCAGGCTTTTCCGAAATCTTAGCTTTAATACTTAGTT--TAATGTCGTATTAAAGCTAGATTTCGGGAAATCTTGATTCTGCAGTTAAATTGCAAAGTGAAAATGGTTT-------G---TTTTGTTTTATCAATAT	Size	Hit Count	Total Norm	Total
No Reads

droEle1

AAAGAAATACATCTATGAGGCACACGAAAG------------AGAGCACGGCAAAATCTGATTTTTCCAAACTCGTCGCTTTAATAATTAATTTTTAAAATCATATTAAAGCTAGAGTTTGGAAAATTTTGATTCTGCATTTGATACC-GAAGTCAGTAT----T-------G---GTTTTTTTTTTAACTGC	Size	Hit Count	Total Norm	Total
No Reads

droRho1

AAAGAAATATATCTACGAGGGATACGCAAG------------TGAGCATGGCAGACTCTGATTTTTTCAGACTCTTCGCTTAAATACTTAATT--TAGTGTCGTATTAAAGCCGGAGTTTGAAAGAATTTGTTTCTGCATTTGTTTTC-GAAATAAAAAC----T-------A---CAAAATTTCCTAAATAT	Size	Hit Count	Total Norm	Total
No Reads

droFic1

AAAGAAATATTTTACTGAGAAACGTAAAAA------------CAAGCACGGTAGACTCGGGCTTTTCGG-ATCCCGGGCTTTACTACCGAATA--TAGTGCCGTAATAAAGCCGGAGATTGGAAAATTTCGGATCTGAATTTAAAATC-CAAGTAAAAAAAATATATCA---T---AAATGTTTTAGTAGTAT	Size	Hit Count	Total Norm	Total
No Reads

der_45

scaffold_4845:10617587-10617649 -

Known Ortholog

Testes-restricted

3pUTR

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-30.3	-30.1	-30.0