ID:

der_442

 Coordinate:

scaffold_4690:14352195-14352345 -

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-31.8 -31.7 -31.6

Flybase annnotation

CDS [Dere\GG17729-cds]; exon [dere_GLEANR_2631:2]; intron [Dere\GG17729-in]

Repeatable elements

NameClassFamilyStrand
DNAREP1_DMRCHelitron-
mature
  1. scaffold_4512:619301-619327 +
  2. scaffold_4512:1201574-1201600 -
  3. scaffold_4770:326652-326678 -
  4. scaffold_4770:810801-810827 -
  5. scaffold_4770:827559-827585 +
  6. scaffold_4770:1019359-1019385 +
  7. scaffold_4770:1518892-1518918 +
  8. scaffold_4770:1620236-1620262 +
  9. scaffold_4770:2507657-2507683 -
  10. scaffold_4784:18252894-18252920 +
  11. scaffold_4784:24880179-24880205 +
  12. scaffold_4793:34437-34463 +
  13. scaffold_4845:2447437-2447463 -
  14. scaffold_4845:2513104-2513130 +
  15. scaffold_4845:2820569-2820595 +
  16. scaffold_4845:13085829-13085855 +
  17. scaffold_4929:20050698-20050724 +
  18. scaffold_4929:20059181-20059207 -
  19. scaffold_4929:21807568-21807594 -
  20. scaffold_4929:26147799-26147825 -
  21. der_442  scaffold_4690:14352204-14352230 -
  22. scaffold_4770:449677-449703 -
  23. scaffold_4770:1277497-1277523 -
  24. scaffold_4770:6416815-6416841 -
  25. scaffold_4784:21516284-21516310 -
  26. scaffold_4784:24534965-24534991 -
  27. scaffold_4784:25472021-25472047 -
  28. scaffold_4845:3381876-3381902 -
  29. scaffold_4929:12635881-12635907 -
  30. scaffold_4929:18222438-18222464 -
  31. scaffold_4929:18527882-18527908 -
  32. scaffold_4929:20545544-20545570 -
  33. scaffold_4929:25619096-25619122 -
star

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
AAACTGTCGAGCGACTGTCCTTCATACATGTGGCCGGCACCAAGGGAAAGGTGGGTACATATGTATATTAATGTCCCTAATTTGTTATACCCATTACTCGTAGGGTAAAAGGGTGTGCTAGTTCGTTCAGGATCAATAACGGAGTTAGTCGATCTGGCCATGTCCGTCCGTATGAACGTCGAGATCTCAGGAAGTACATAACAGCTAGAAAGTGGAGATTAGGCATGCACATTCCAGAGTCATAGATACAT
**************************************************..(((.((((..........))))))).((((.((.((((((.((((((...))))))..)))))))).))))(((((((((.......(((((((((.....)))))....)))))))...)))))).......................************************************************** 		Read size # Mismatch Hit Count Total Norm Total GSM1528801
follicle cells		 M055
female body
.....................................................................................................................................................................GTCCGTATGAACGTCGAGATCTCAGGA........................................................... 27 0 20 0.30 6 6 0
.......................................................................................................................................................................CCGTATGAACGTCGAGCTCTCAGGA........................................................... 25 1 20 0.10 2 2 0
...........CGACTGTCGTTCATGAATG............................................................................................................................................................................................................................. 19 3 20 0.05 1 0 1
.....................................................................................................................................................................GTCCGTATGAACGACGAGATCTCAGGA........................................................... 27 1 20 0.05 1 1 0
.....................................................................................................................................................................GTCCGTATGAACGTCGAGATCTCAG............................................................. 25 0 20 0.05 1 0 1
......................................................................................................................................................................TCCGTATGAACGTCGAGCTCTCAGGA........................................................... 26 1 20 0.05 1 1 0
..................................................................................................................................................................TCCGTCCGTATGAACGTCGAGATCTC............................................................... 26 0 20 0.05 1 0 1

Anti-sense strand reads

TTTGACAGCTCGCTGACAGGAAGTATGTACACCGGCCGTGGTTCCCTTTCCACCCATGTATACATATAATTACAGGGATTAAACAATATGGGTAATGAGCATCCCATTTTCCCACACGATCAAGCAAGTCCTAGTTATTGCCTCAATCAGCTAGACCGGTACAGGCAGGCATACTTGCAGCTCTAGAGTCCTTCATGTATTGTCGATCTTTCACCTCTAATCCGTACGTGTAAGGTCTCAGTATCTATGTA
**************************************************..(((.((((..........))))))).((((.((.((((((.((((((...))))))..)))))))).))))(((((((((.......(((((((((.....)))))....)))))))...)))))).......................************************************************** 		Read size # Mismatch Hit Count Total Norm Total GSM1528801
follicle cells		 V107
male body		 V108
head
 V040
embryo
 M055
female body
....................................................................................................................................................AGCTAGACCGGGACAGGCAAGCATACT............................................................................ 27 2 6 2.33 14 14 0 0 0 0
.................................................................................................................AAACGATCAAGGAAGTCGTAG..................................................................................................................... 21 3 3 0.33 1 0 1 0 0 0
....................................................................................................................................................AGCTAGACCGGGACAGGCAGGCATACT............................................................................ 27 1 5 0.20 1 1 0 0 0 0
...................................................................................................................CCGATCAAGGAAGTCGTAG..................................................................................................................... 19 3 20 0.15 3 0 0 2 0 1
....................................................................................................................................................AGCGAGACCGGGACAGGCAAGCATACT............................................................................ 27 3 7 0.14 1 1 0 0 0 0
............................................................................................................................................................CGGTACAGGCAGGCATACTTG.......................................................................... 21 0 16 0.13 2 0 0 1 1 0
...................................................................................................................AGGATCAAGGAAGTCGTAG..................................................................................................................... 19 3 17 0.12 2 0 0 2 0 0
..............................................................................................................................................................................................................TCTATCACATCTAATCCGTAT........................ 21 3 11 0.09 1 0 0 0 1 0
...................................................................................................................CGGATCAAGGAAGTCCTAG..................................................................................................................... 19 3 16 0.06 1 0 1 0 0 0
......................................................................................................................ATCAAGCAAGTCGTAGCAA.................................................................................................................. 19 3 20 0.05 1 0 1 0 0 0
.....................................................................................................................GATCAAGTAAGTCGTAGC.................................................................................................................... 18 3 20 0.05 1 0 0 1 0 0
....................................................................................................................GGATCAAGGAAGTCCTAGC.................................................................................................................... 19 3 20 0.05 1 0 1 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droEre2 scaffold_4690:14352145-14352395 - der_442 AAACTGTCGAGCGACTGTCCTT-----CA-------------TACATGTGGCCGGCACCAAG------------GGAAAGGTGG--GTA------------------------------------------------------------------CATA--TGTATATTAATGTCCC--------------------------TAAT--TTGTTATACCCATTACTCGTAGGGTAAA-AGGGTGTGCTAG------TTC--------------------------------------------------------------GTTCAGGATCAATAACGGAGTTAGTCGATCTGGCCATGTC--------------------------------C----GTCCGTATGAACGTCGAGATCTCAGGAAGTACA---TAACAGCTAGAAAGTGGAGATTAGGCATGCACATTC--CAGAGTCAT-------AGATACAT
droYak3 v2_chrUn_160:4214-4535 + AAACTGTCAGT-----GTT--------GAAGACTCTCCTTCGCACTTC-------C--------------------AC----------------TAGCTGAGTAACGGGTATCAGATAGTCGGGGAACTC----------------------------G--TCTATAGCGTTCTCTCT------------------TGTTTTTCATT--TAATTATACCCGTTACTCGTAGAGTAAA-AGGGTATACTAGA-----TTCGTTGAAAAGTATGTAACAGGCAGAAGGAAGCGTTTCC------------------------------------------------GTCGATTTGGCCATGTCCGTCTGTCCGTCCGTCTGTCCGTCTGTCCGTCTGTCTGTCCGTATGAACGTCGAGATCTCAGGAACTACA-----AAAGCTAGAAAGTTGAGATTAGGCATACAGACTC--CAGGGACAT-------AGACGCAG
droSec2 scaffold_8:1558198-1558448 - GGAGTGGAGTCGAGTGGTGCCA-----CC-------------AAGAAGCGG--------------------------------------------------------------------------AACACGCCGTAAACAATGCAACGTTGAGTCAGAATG-CCAAGCAAAAG-T----------------------------A--CAAATTTTATACTCCTTACTCGTTGAGTAAA-AGGGTATACTAGA-----CTCGTTGCAAAGTATGTTACAGGTAGAAGGAAGGCTTTCCGAGCATATAAAGTATATATATTCCTGATTAGGATATAT------------TG----------------------------------------------------------------------------------------------ATATATATGATATTAAGCATACAGGTTC--TAGAGACAT-------ACATACAT
droSim2 2l:20946033-20946293 - GCAAC----------TGGCCTT-----TA-------------ATC---------------------------------------------TAAA------AATAGTTGGTATCAGGAAGTT---TTGCATGTTG------ATGCTGCTTTT-------------------------------------------------G--T--CAATTGTTATAACCGTTGCTCGTAGACTAAATAGGGTATACTAGA-----TTCGTTGAAAAGTATGTAATATGTAAATGAAAGCGATTCCGACCATATAAAGTATATATATTCTTGATCAGGATCAATAGC--------------------------------------------------------------------------CTGAGATCTCAGGAATTAAA-----ACAGCTAGAAAGTTGATATGAATCACGCAGATTC--CAGAGACGT-------TAACACA-
dm3 chrX:17925309-17925483 - GAAAAGTGGA-----------------------------------------------------------------------------TAT-TTA------A----------------------TC------------------------------------TGT------------T-------------------------TA--TTATCATTATACCCGTTACTCTTAGAGTTAT-AGGGTATTCTAGA-----TTCGT--------------------------------------------------------------------------------------------GCTTTGT----------------------------CCGTATATCCGCCCGTATGAACGTTGAGATCTCAGGAACTACAATATAAAAGCTAGAAAGTGGAGATTAAGCATGCAGATTC--CAAAGACAT-------GGA-----
droEug1 scf7180000409258:13694-14018 - GACC-GT-----------CCTACTTCTCC-------------TCCATATAACCGAAACCAGACTTTGCACGAAGTGGAAT--GGATG---TAGG------A----------------------TTTTCATAAT-------------------------------------------C-------------------------AT--TTATTATTATACCCGTTACTCCTATAGTAAA-AGTGTATGGTAGA-----TTCGTTTAAAAGTATGTAACAGGTAGAAGGAAGCATTTCCGACCCTATAAAGTATATAAATTCTTGATCAAGATCAATAGCGAA----GTAGATTTAGCCATGTCCGT------------------------CTGTCCGTCTGTCCGTATGAACGCAGAGATCTCAGGAACTATA-----AGAGATACATAGTTGGGATTAAGCAAAAAGATTC--TTGAGGT--CCCGGGACGGCACAA
droBia1 scf7180000302255:95189-95420 + ATATA-T---------GTT-------------------------------TTTGGCTCTAAG------------TAAC----------------CAACTGTG-AA--------------------------------------------------AAAATA-GCAAATATATGTTTG--------------------------AAATGAGTTGTACGGCCGCTGCTCGTAGAACAAA-ATGGTATACTCGA-----TTCAT--------------------------------------------------GTATATTATTG---------AGCATCCGA----GTCGATCTATCCATGTC--------------------------------C----GTCCGTATGAACGCTGTGATCTCGGAAATTCTA-----AGAGCTAGACAGTTGATATTGCAGTAAAAGATTTATTATCATCGT-------AAGCAGAT
droTak1 scf7180000415399:941052-941292 - CGGCTGTGCTTCAG-----------------------------GGACTTTACAC-----------TTTACGAAATGGAAGGTAG--GTAA-------------------------------------------------------------------------TAAATAGGTGCCTT-------------------------AA--TAATCATTATACCCGTTACTCGTAGAGTAAA-AGGG----------------------------------------AAGGAAGCTCTTCCGACTTTATAAAGTATATATATTTTTGATTAGGGTCTGT------------TTGTCTGT----------------------------------CCGTCTGTCTGTCCGTATGAACGCTGAGATCTCGGAAACTACA-----AAAGCTAGAAGGTTGAGATTTTCCACACATATTC--TTGGG-------------------
droEle1 scf7180000491033:147277-147439 - GTACTGAAC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATTTATACCCGTTTCTCGTAGAGTAAA-AGGGTATATTGTA-----TTCGT-----------------------------------------------------------TGATCAGGATCATTAGCCGG----GTCGATCTAGCCATGTC--------------------------------C----GTCTGTATGGACTTCGAGATATCGGAAAATACA-----AAAGCTAGAGATTTCGGATTTGGCATGCAAATTC--TAG---------------------
droRho1 scf7180000769089:4633-4903 - GGCACACAA-----------------------------------------------------------------TAAAGA--CCATG---TAAA------AACA-----------------------------------------------------------------TATGTTTT-CAAGATTAATGCCGGAAACTCTCAATGAC--TCTTTATACCCGTTACTCGTAGAGTAAA-AGGGTATATTGTA-----T--------------------------------------------TATAAAGTATATATATTCTTGTTCAGGATC--TAGTCGA----GTCGATCTAGCCATGTCCGTC----------------TGTCTGTCCGTCTGTCTGTCCGTATGAATGCTGAGATCTCGGAAACTATA-----AAAGCTAGAAGATTGGCATTTTGCATGTAGATTT--TAGGAGT--TCCTAAGCAGCGCAA
droFic1 scf7180000454086:257349-257526 - ACACACTGACACAAGTTTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTAGTT--CTTTTATACCCGTTACTCGTAGAGTCAA-AGAA------AGA-----TTGATTGAAA-----------------------------------------------------------------------CGA----ATCTATCAAGCTATGTCTATC----------------TGTCTGTCTCATTGTTCGTCTGTACAAACGTCGAGATCTCTGGAACTATA-----TGATACAGAATATTGAGATTAGGTATGCAGATT---------------------------
droKik1 scf7180000302696:363607-363666 - AGACCGTGGAGAAGCTGTCCTA-----CA-------------TCCATGTTGCCGGCACC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGGGCAAG----GTC----------------------------------------------------------------------------------------------------------------------------------------------AGCATAT
droAna3 scaffold_13117:3400402-3400456 + AGACCGTGGAGCAGCTGTCCTT-----CA-------------TCCATGTGGCTGGCACCAAG------------GGCAAG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGAG
droBip1 scf7180000396540:9249-9361 - TT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GATCAGCATCAACAGCCGA----ATATAGC-------------------------------------CTGTCCGTCTGTCCGTATGAACGTGTGGATCTCAGAAG------------AGATAGAATTATAGGATTTAAATTGCAGACTC--CTACAAT---------AATCACGC
dp5 XL_group3a:1344559-1344690 - TT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GATCAGCGTCAATAGCCGA----GTAGATTGATGT--------------------------------CGGTCCGTCCGTCCCTATGAACGCCTAGTGCTCAAAGATTAGA-----ATAGCTAGAGCAACGAAATTTTGTATCCAGACTT--CTGTGAT--ATGTCACTGTTACAA
droPer2 scaffold_77:223269-223326 - CCAAACTCGAGCAGCTGTCCTT-----CA-------------TCCATGTGGCGGGCACCAAG------------GGCAAGGTA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AG--CGC
droWil2 scf2_1100000004930:186396-186583 - GGTATATAAT--------------------------------------------------------------------------------------------------------------------------------------------------------GTATAT-----------------------------------------------------------------------------------------------AAATGTATGTAATATGCAGAAGGAAT--------------AAAAGTATATATATTCTTGATCAGCATCAACAGCCGA----GTCGATCTAGCCATGCC--------------------------------CGTCTGTCCGTATGAACACCTAGATCTCGGAAACTGTA-----AAAGCTAGAGCCACCAAATTTGGTATGTAGACTC--GTGTAGT--ATGTT--AAGTGCTC
droVir3 scaffold_12958:1238914-1239025 - CTCA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAAAGTAAATATATTCTTGATCAGCATCAATAGTCGA----GCCGATCTAGCCATGTT--------------------------------C----GTCTGTATGAACGTTAGGATCGCAGAACCTATA-----AGAGCTAGAGACTTGAAATT----------------------------------------
droMoj3 scaffold_6428:20234-20402 - AATATGCA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGT--CTATTACACCCACTTTT-----AACAAA-AAGGTATGATTAAATGGTTTTG-----------------------------------------TTAAAAGTACATATATTCTTGATCAGCGAC--GAGCTTA----GTCGATATGGCCCTGTC--------------------------------CGTCCGTATGTATGAACGCGTCGATCTCAGAAGATATA-----AGAGCTAGAGACTTGAAATT----------------------------------------
droGri2 scaffold_14853:4215760-4215874 - TGGGC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAA-AGGGTATTCTGGT-----TT--------------------------------------------------------------TGGTCAGAATCAACAGCCGA----ATCAATCTAGCCAAGTT--------------------------------C----GCCCGTATGAACAAAAGGATCTCAGAAACCATA-----AGAGCCAGAGAATAGAGATT----------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droEre2
AAACTGTCGAGCGACTGTCCTT-----CA-------------TACATGTGGCCGGCACCAAG------------GGAAAGGTGG--GTA------------------------------------------------------------------CATA--TGTATATTAATGTCCC--------------------------TAAT--TTGTTATACCCATTACTCGTAGGGTAAA-AGGGTGTGCTAG------TTC--------------------------------------------------------------GTTCAGGATCAATAACGGAGTTAGTCGATCTGGCCATGTC--------------------------------C----GTCCGTATGAACGTCGAGATCTCAGGAAGTACA---TAACAGCTAGAAAGTGGAGATTAGGCATGCACATTC--CAGAGTCAT-------AGATACATSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
..............................................................................................................................................................................................................................................................................................................................................................................................................GTCCGTATGAACGTCGAGATCTCAGGA.......................................................................27200.3060000006
..............................................................................................................................................................................................................................................................................................................................................................................................................GTCCGTATGAACGTCGAGATCTCAG.........................................................................25200.0511000000
.......................................................................................................................................................................................................................................................................................................................................................................TC--------------------------------C----GTCCGTATGAACGTCGAGATCTC...........................................................................26200.0511000000
droYak3
AAACTGTCAGT-----GTT--------GAAGACTCTCCTTCGCACTTC-------C--------------------AC----------------TAGCTGAGTAACGGGTATCAGATAGTCGGGGAACTC----------------------------G--TCTATAGCGTTCTCTCT------------------TGTTTTTCATT--TAATTATACCCGTTACTCGTAGAGTAAA-AGGGTATACTAGA-----TTCGTTGAAAAGTATGTAACAGGCAGAAGGAAGCGTTTCC------------------------------------------------GTCGATTTGGCCATGTCCGTCTGTCCGTCCGTCTGTCCGTCTGTCCGTCTGTCTGTCCGTATGAACGTCGAGATCTCAGGAACTACA-----AAAGCTAGAAAGTTGAGATTAGGCATACAGACTC--CAGGGACAT-------AGACGCAGSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
................................................................................................................................................................................................................................................................TTCGTTGAAAAGTATGTAACAGGCAGA.....................................................................................................................................................................................................................27203.0561000000000061
..........................................................................................................................................................................................................................................................................AGTATGTAACAGGCAGAAGGAAGCGT............................................................................................................................................................................................................26201.2024000000000024
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGAAAGTTGAGATTAGGCATACAGA.............................26200.9519019000000000
......TCAGT-----GTT--------GAAGACTCTCCTTCGCA....................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.7014000000000014
..................................................................................................................................................................................................................................CGTAGAGTAAA-AGGGTATACTAGA-----T...............................................................................................................................................................................................................................................25200.7014014000000000
.............................................................................................................................................................................................................................................................................ATGTAACAGGCAGAAGGAAGCGT............................................................................................................................................................................................................23200.6513000000000013
.....................................................................................................................................................................................................................................................................................................................................................................................................................TGAACGTCGAGATCTCAGGAACTACA-----............................................................26200.6012001200000000
..............................................................................................................................................................................................................................................................................................................................................................TTGGCCATGTCCGTCTGTCCGTCC..........................................................................................................................24200.5010001000000000
...............................ACTCTCCTTCGCACTTC-------C--------------------AC----------------T.................................................................................................................................................................................................................................................................................................................................................................................................................21200.45909000000000
...............................................................................................................................................................................................................................................................................GTAACAGGCAGAAGGAAGCGTTTCC------------------------------------------------GT......................................................................................................................................................27130.38500000010004
..............................................................................................................................................................................................................................................................................................................................................................................................................................................A-----AAAGCTAGAAAGTTGAGATTAGGCA...................................26200.35707000000000
......................................TTCGCACTTC-------C--------------------AC----------------TAGCTGAGT.........................................................................................................................................................................................................................................................................................................................................................................................................22200.30606000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAAGTTGAGATTAGGCATACAGAC............................26200.30600600000000
...............................................................................................................................................................................................................................................................................................................................................................................TCCGTCCGTCTGTCCGTCTGTCCGT........................................................................................................25200.30606000000000
................................................................................................................................TC----------------------------G--TCTATAGCGTTCTCTCT------------------TGTTTT......................................................................................................................................................................................................................................................................................................2640.25100100000000
...................................................................................................................................................................................................................................................................................................................................................................CATGTCCGTCTGTCCGTCCGTCTG.....................................................................................................................24200.25505000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................GATCTCAGGAACTACA-----AAAGCTAGAAAGT...............................................29200.20400400000000
...........................................................................................................................................................................................................................................................................................................................................................................................................TCTGTCCGTATGAACGTCGAGATCTC...........................................................................26200.15303000000000
....TGTCAGT-----GTT--------GAAGACTCTCCTTCGCAC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................28200.15303000000000
...........................................................................................................................................................................................................................................................................................................................................................................TCTGTCCGTCCGTCTGTCCG.................................................................................................................20200.15303000000000
.....................................................................................................................................................................................................................................................................................GGCAGAAGGAAGCGTTTCC------------------------------------------------GT......................................................................................................................................................21150.13200000020000
...............................................................................................................TCAGATAGTCGGGGAACTC----------------------------G--T..............................................................................................................................................................................................................................................................................................................................................2190.11101000000000
........................................................................................................................................................................................................................................................................................................................................................................................................CTGTCTGTCCGTATGAACGTC...................................................................................21200.10202000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGAGATTAGGCATACAGACTC--CAGGG...................26200.10201100000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATACAGACTC--CAGGGAC.................18200.10220000000000
.................TT--------GAAGACTCTCCTTCGCACT..................................................................................................................................................................................................................................................................................................................................................................................................................................................................21200.10202000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGGCATACAGACTC--CAGG....................19200.10202000000000
.......................................TCGCACTTC-------C--------------------AC----------------TAGCTGAGTAACGG....................................................................................................................................................................................................................................................................................................................................................................................................26200.10202000000000
..............................................................................................................................................................................................................................................................................TGTAACAGGCAGAAGGAAGCGTTTCC------------------------------------------------GT......................................................................................................................................................28130.08101000000000
.............................................................................................................................................................................................................TT--TAATTATACCCGTTACTCGTAGAG.......................................................................................................................................................................................................................................................................26200.05101000000000
............................................................................................................................................................................................................................................................................................................................................................ATTTGGCCATGTCCGTCTGTC...............................................................................................................................21200.05100000100000
................................................................................................................................................................................................................................................................................................................................................................................................................CCGTATGAACGTCGAGATCTCAGGAAC.....................................................................27200.05101000000000
..............................................TC-------C--------------------AC----------------TAGCTGAGTAACGGGTATCAG.............................................................................................................................................................................................................................................................................................................................................................................................26200.05100000010000
.................................................................................................CTGAGTAACGGGTATCAGATAGT........................................................................................................................................................................................................................................................................................................................................................................................23200.05100100000000
...................................................................................................................................................................................................................................................................................................................................................................................................................................TCAGGAACTACA-----AAAGCTAGAAAGTTG.............................................27200.05101000000000
..............................................................................................................................................................................................................................................................................................................................................................................................................GTCCGTATGAACGTCGAGATCTCAGG........................................................................26200.05100100000000
..............................GACTCTCCTTCGCACTTC-------C--------------------AC----------------T.................................................................................................................................................................................................................................................................................................................................................................................................................22200.05101000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGAAAGTTGAGATTAGGCATACAG..............................25200.05100100000000
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAAGTTGAGATTAGGCATACAGACTC--........................28200.05100100000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGGCATACAGACTC--CAGGGAC.................21200.05110000000000
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATACAGACTC--CAGGGACAT-------AGA.....22200.05100000010000
..............................................................................................................................................................................................................................................................................................................................................................................GTCCGTCCGTCTGTCCGTCTGTCCGTC.......................................................................................................27200.05100100000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................CA-----AAAGCTAGAAAGTTGAGATTAGG.....................................25200.05101000000000
.............................................TTC-------C--------------------AC----------------TAGCTGAGTAACGGG...................................................................................................................................................................................................................................................................................................................................................................................................21200.05100000010000
........................................................................................................................................................................................................................................................AGA-----TTCGTTGAAAAGTATG................................................................................................................................................................................................................................19200.05101000000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTAGGCATACAGACTC--CAGGG...................21200.05101000000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACAGACTC--CAGGGACAT-------AGACGCA.25200.05100100000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................TACA-----AAAGCTAGAAAGTTGA............................................20200.05101000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAGACTC--CAGGGACAT-------AGACG...21200.05100000010000
.....GTCAGT-----GTT--------GAAGACTCTCCTTCGC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................25200.05101000000000
droSec2
GGAGTGGAGTCGAGTGGTGCCA-----CC-------------AAGAAGCGG--------------------------------------------------------------------------AACACGCCGTAAACAATGCAACGTTGAGTCAGAATG-CCAAGCAAAAG-T----------------------------A--CAAATTTTATACTCCTTACTCGTTGAGTAAA-AGGGTATACTAGA-----CTCGTTGCAAAGTATGTTACAGGTAGAAGGAAGGCTTTCCGAGCATATAAAGTATATATATTCCTGATTAGGATATAT------------TG----------------------------------------------------------------------------------------------ATATATATGATATTAAGCATACAGGTTC--TAGAGACAT-------ACATACATSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
.............................................................................................................................................................................................................................................................................ATGTTACAGGTAGAAGGAAG...............................................................................................................................................................................................................2020.5010001
droSim2
GCAAC----------TGGCCTT-----TA-------------ATC---------------------------------------------TAAA------AATAGTTGGTATCAGGAAGTT---TTGCATGTTG------ATGCTGCTTTT-------------------------------------------------G--T--CAATTGTTATAACCGTTGCTCGTAGACTAAATAGGGTATACTAGA-----TTCGTTGAAAAGTATGTAATATGTAAATGAAAGCGATTCCGACCATATAAAGTATATATATTCTTGATCAGGATCAATAGC--------------------------------------------------------------------------CTGAGATCTCAGGAATTAAA-----ACAGCTAGAAAGTTGATATGAATCACGCAGATTC--CAGAGACGT-------TAACACA-SizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
..............................................................................................................................................................................................................................................AGGGTATACTAGA-----TTCGTTGAAAAG....................................................................................................................................................................................................................................25203.9078000000780000000000
................................................................................................................................................................................................................................................GGTATACTAGA-----TTCGT...........................................................................................................................................................................................................................................16202.3046000000000046000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACGCAGATTC--CAGAGACGT-------T.......2111.00100000100000000000
................................................................................................................................................................................................................................................................TTCGTTGAAAAGTATGTAATATG.........................................................................................................................................................................................................................2311.00100010000000000000
................................................................................................................................................................................................................................................................................TAATATGTAAATGAAAGCGATT..........................................................................................................................................................................................................2211.00100000000000001000
.............................................................................................................................................................................................................................................TAGGGTATACTAGA-----TTCGTTG.........................................................................................................................................................................................................................................21100.80800008000000000000
.......................................................................................................................................................................................................................................................TAGA-----TTCGTTGAAAAGTATGTAAT............................................................................................................................................................................................................................2430.33100000010000000000
.....................................................................................................................................................................................................................................................................................................TCCGACCATATAAAGT...........................................................................................................................................................................................16200.30600000000006000000
...........................................................................................................................................................................................................................................AATAGGGTATACTAGA-----TTCGTTGAAAA.....................................................................................................................................................................................................................................2740.25100000001000000000
...............................................................................................................................................................................................................................................GGGTATACTAGA-----TTCGTTGAAAAGTA..................................................................................................................................................................................................................................26200.25500000000050000000
.................................................................................................................................................................................................................................................................................................................AAGTATATATATTCTTGATCAGGA.......................................................................................................................................................................24200.15300000000300000000
.............................................................................................................................................................................................................................................TAGGGTATACTAGA-----TTCGTTGAAAAG....................................................................................................................................................................................................................................2670.14100000010000000000
.............................................................................................................................................................................................................................................TAGGGTATACTAGA-----TTCGTTGA........................................................................................................................................................................................................................................2290.11100000000010000000
..................................................................................................................................................................................................................................................TATACTAGA-----TTCGTTGAAAAGTATG................................................................................................................................................................................................................................25200.10200000000000020000
...................................................................................................................................................................................................................................................................................................................GTATATATATTCTTGATCAGGA.......................................................................................................................................................................22200.10200000002000000000
............................................................................................................................................................................................................................................ATAGGGTATACTAGA-----TTCC............................................................................................................................................................................................................................................19180.06100000000001000000
.........................................................................................................................................................................................................................................................GA-----TTCGTTGAAAAGT...................................................................................................................................................................................................................................15200.05100000000001000000
.....................................................................................................................................................................................................................................................................................................................ATATATATTCTTGATCAGGATCAAT..................................................................................................................................................................25200.05100010000000000000
..................................................................................................................................................................................................................................................................................................................AGTATATATATTCTTGATCAGGATC.....................................................................................................................................................................25200.05100000000000010000
.................................................................................................................................................................................................................................................GTATACTAGA-----TTCGTTGAAAAGTA..................................................................................................................................................................................................................................24200.05100000001000000000
.........................................................................................................................................................................................................................................................................................................................ATATTCTTGATCAGGATCAATA.................................................................................................................................................................22200.05100000000001000000
.............................................................................................................................................................................................................................................................................................................................TCTTGATCAGGATCAAT..................................................................................................................................................................17200.05100000000001000000
.....................................................................................................................................................................................................................................................................................................................ATATATATTCTTGATCAGGATCAA...................................................................................................................................................................24200.05100100000000000000
dm3
GAAAAGTGGA-----------------------------------------------------------------------------TAT-TTA------A----------------------TC------------------------------------TGT------------T-------------------------TA--TTATCATTATACCCGTTACTCTTAGAGTTAT-AGGGTATTCTAGA-----TTCGT--------------------------------------------------------------------------------------------GCTTTGT----------------------------CCGTATATCCGCCCGTATGAACGTTGAGATCTCAGGAACTACAATATAAAAGCTAGAAAGTGGAGATTAAGCATGCAGATTC--CAAAGACAT-------GGA-----SizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
.................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAAAGCTAGAAAGTGGAGA..........................................2139.002700000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000184000000000000000000000000000000000000000000000000000000000100000000000030000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................TATAAAAGCTAGAAAGTGGAG...........................................2137.672300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020100000000000000000001000000010000000000001121100000010000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................................................................................................................................TATAAAAGCTAGAAAGTGGAGA..........................................2231.3340000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000031000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................TATGAACGTTGAGATCTCAGGAACT....................................................................2551.2060000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000004000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................ATAAAAGCTAGAAAGTGGAG...........................................2031.0030000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000010000000000100000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................TGAACGTTGAGATCTCAGGAACT....................................................................23100.9090000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000106100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000
...................................................................................................................................................................................................................................................................................................................................................................................................................TATGAACGTTGAGATCTCAGGAAC.....................................................................2470.4330000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000100000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................................................................................................TAAAAGCTAGAAAGTGGAGA..........................................2030.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................................................................................................................................................................................................................................................................................................................................................ATGAACGTTGAGATCTCAGGAACT....................................................................2480.2520000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000
.....................................................................................................................................................................................................................TATACCCGTTACTCTTAGAGT......................................................................................................................................................................................................................................................................2140.2510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000
................................................................................................................................................................................................................ATCATTATACCCGTTACT..............................................................................................................................................................................................................................................................................1840.2510000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................TATGAACGTTGAGATCTCAA.........................................................................20200.2040000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000101000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................TGAACGTTGAGATCTCAGGA.......................................................................20170.1830000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001100001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................TATGAACGTTGAGATCTCAGGA.......................................................................22120.1720000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................AACGTTGAGATCTCAGGAAC.....................................................................20130.1520000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................................CATGCAGATTC--CAAAGAT.................1870.1410000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................TGAACGTTGAGATCTCAGGAA......................................................................21150.1320000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000
........................................................................................................................................................................................................................................................................................................................................................................................................................ACGTTGAGATCTCAGGAACTA...................................................................21110.0910000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000
...................................................................................................................................................................................................................................................................................................................................................................................................................TATGAACGTTGAGATCTCAGG........................................................................21120.0810000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................TGAACGTTGAGATCTCAGGAAC.....................................................................22120.0810000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................ACGTTGAGATCTCAGGAACT....................................................................20120.0810000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
.........................................................................................................................................................................................................................................................................................................................................................................................................................CGTTGAGATCTCAGGAACTA...................................................................20120.0810000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................TATGAACGTTGAGATCTC...........................................................................18150.0710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................................................................................................................................................................................................................TATGAACGTTGAGATCTCAGGT.......................................................................22150.0710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEug1
GACC-GT-----------CCTACTTCTCC-------------TCCATATAACCGAAACCAGACTTTGCACGAAGTGGAAT--GGATG---TAGG------A----------------------TTTTCATAAT-------------------------------------------C-------------------------AT--TTATTATTATACCCGTTACTCCTATAGTAAA-AGTGTATGGTAGA-----TTCGTTTAAAAGTATGTAACAGGTAGAAGGAAGCATTTCCGACCCTATAAAGTATATAAATTCTTGATCAAGATCAATAGCGAA----GTAGATTTAGCCATGTCCGT------------------------CTGTCCGTCTGTCCGTATGAACGCAGAGATCTCAGGAACTATA-----AGAGATACATAGTTGGGATTAAGCAAAAAGATTC--TTGAGGT--CCCGGGACGGCACAASizeHit CountTotal NormTotal
No Reads
droBia1
ATATA-T---------GTT-------------------------------TTTGGCTCTAAG------------TAAC----------------CAACTGTG-AA--------------------------------------------------AAAATA-GCAAATATATGTTTG--------------------------AAATGAGTTGTACGGCCGCTGCTCGTAGAACAAA-ATGGTATACTCGA-----TTCAT--------------------------------------------------GTATATTATTG---------AGCATCCGA----GTCGATCTATCCATGTC--------------------------------C----GTCCGTATGAACGCTGTGATCTCGGAAATTCTA-----AGAGCTAGACAGTTGATATTGCAGTAAAAGATTTATTATCATCGT-------AAGCAGATSizeHit CountTotal NormTotal
No Reads
droTak1
CGGCTGTGCTTCAG-----------------------------GGACTTTACAC-----------TTTACGAAATGGAAGGTAG--GTAA-------------------------------------------------------------------------TAAATAGGTGCCTT-------------------------AA--TAATCATTATACCCGTTACTCGTAGAGTAAA-AGGG----------------------------------------AAGGAAGCTCTTCCGACTTTATAAAGTATATATATTTTTGATTAGGGTCTGT------------TTGTCTGT----------------------------------CCGTCTGTCTGTCCGTATGAACGCTGAGATCTCGGAAACTACA-----AAAGCTAGAAGGTTGAGATTTTCCACACATATTC--TTGGG-------------------SizeHit CountTotal NormTotal
No Reads
droEle1
GTACTGAAC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TATTTATACCCGTTTCTCGTAGAGTAAA-AGGGTATATTGTA-----TTCGT-----------------------------------------------------------TGATCAGGATCATTAGCCGG----GTCGATCTAGCCATGTC--------------------------------C----GTCTGTATGGACTTCGAGATATCGGAAAATACA-----AAAGCTAGAGATTTCGGATTTGGCATGCAAATTC--TAG---------------------SizeHit CountTotal NormTotal
No Reads
droRho1
GGCACACAA-----------------------------------------------------------------TAAAGA--CCATG---TAAA------AACA-----------------------------------------------------------------TATGTTTT-CAAGATTAATGCCGGAAACTCTCAATGAC--TCTTTATACCCGTTACTCGTAGAGTAAA-AGGGTATATTGTA-----T--------------------------------------------TATAAAGTATATATATTCTTGTTCAGGATC--TAGTCGA----GTCGATCTAGCCATGTCCGTC----------------TGTCTGTCCGTCTGTCTGTCCGTATGAATGCTGAGATCTCGGAAACTATA-----AAAGCTAGAAGATTGGCATTTTGCATGTAGATTT--TAGGAGT--TCCTAAGCAGCGCAASizeHit CountTotal NormTotal
No Reads
droFic1
ACACACTGACACAAGTTTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTAGTT--CTTTTATACCCGTTACTCGTAGAGTCAA-AGAA------AGA-----TTGATTGAAA-----------------------------------------------------------------------CGA----ATCTATCAAGCTATGTCTATC----------------TGTCTGTCTCATTGTTCGTCTGTACAAACGTCGAGATCTCTGGAACTATA-----TGATACAGAATATTGAGATTAGGTATGCAGATT---------------------------SizeHit CountTotal NormTotal
No Reads
droKik1
AGACCGTGGAGAAGCTGTCCTA-----CA-------------TCCATGTTGCCGGCACC--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAGGGCAAG----GTC----------------------------------------------------------------------------------------------------------------------------------------------AGCATATSizeHit CountTotal NormTotal
No Reads
droAna3
AGACCGTGGAGCAGCTGTCCTT-----CA-------------TCCATGTGGCTGGCACCAAG------------GGCAAG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGAGSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
................GTCCTT-----CA-------------TCCATGTGGCT...........................................................................................................................................................................................................................................................................................................................................................................................................................................................1911.001100000
droBip1
TT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GATCAGCATCAACAGCCGA----ATATAGC-------------------------------------CTGTCCGTCTGTCCGTATGAACGTGTGGATCTCAGAAG------------AGATAGAATTATAGGATTTAAATTGCAGACTC--CTACAAT---------AATCACGCSizeHit CountTotal NormTotal
No Reads
dp5
TT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GATCAGCGTCAATAGCCGA----GTAGATTGATGT--------------------------------CGGTCCGTCCGTCCCTATGAACGCCTAGTGCTCAAAGATTAGA-----ATAGCTAGAGCAACGAAATTTTGTATCCAGACTT--CTGTGAT--ATGTCACTGTTACAASizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
TT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GATCAGCGTCAATAGCCGA----GTAGA...................................................................................................................................................2614.0040100000300
TT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GATCAGCGTCAATAGCCGA----GTAG....................................................................................................................................................2512.0020000000020
TT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GATCAGCGTCAATAGCCGA----GTAGAT..................................................................................................................................................2711.0010100000000
...................................................................................................................................................................................................................................................................................................................................................................T--------------------------------CGGTCCGTCCGTCCCTATGAACGCCT..................................................................................2711.0010100000000
.............................................................................................................................................................................................................................................................................................................................................................................................................................TAGTGCTCAAAGATTAGA-----ATAGCTA.....................................................2511.0010000000010
TT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GATCAGCGTCAATAGCCGA----G.......................................................................................................................................................2280.7560500001000
TT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GATCAGCGTCAATAGCCGA----GT......................................................................................................................................................2380.5040400000000
TT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GATCAGCGTCAATAGCCGA----........................................................................................................................................................2180.2520200000000
TT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GATCAGCGTCAATAGCCG.............................................................................................................................................................2090.1110000001000
................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACGAAATTTTGTATCCAGAC............................20200.1020200000000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTAGAGCAACGAAATTTTGTAT..................................24200.1020000200000
......................................................................................................................................................................................................................................................................................................................................................................................................................................................AGCTAGAGCAACGAAATTT.......................................19200.0510100000000
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTT--CTGTGAT--ATGTCACTG......21200.0511000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................ATTTTGTATCCAGACTT--CTGT....................21200.0510100000000
droPer2
CCAAACTCGAGCAGCTGTCCTT-----CA-------------TCCATGTGGCGGGCACCAAG------------GGCAAGGTA----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AG--CGCSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
No Reads
droWil2
GGTATATAAT--------------------------------------------------------------------------------------------------------------------------------------------------------GTATAT-----------------------------------------------------------------------------------------------AAATGTATGTAATATGCAGAAGGAAT--------------AAAAGTATATATATTCTTGATCAGCATCAACAGCCGA----GTCGATCTAGCCATGCC--------------------------------CGTCTGTCCGTATGAACACCTAGATCTCGGAAACTGTA-----AAAGCTAGAGCCACCAAATTTGGTATGTAGACTC--GTGTAGT--ATGTT--AAGTGCTCSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTAGACTC--GTGTAGT--ATGTT--AAGTGC..2712.00200020
.....................................................................................................................................................................................................................................................................................TGCAGAAGGAAT--------------AAAAGTATATATAT...................................................................................................................................................................................2611.00100010
................................................................................................................................................................................................................................................................................TAATATGCAGAAGGAAT--------------AAAAGTAT.........................................................................................................................................................................................2511.00100010
...............................................................................................................................................................................................................................................................................................................................................................TAGCCATGCC--------------------------------CGTCTGTCCGTATG.........................................................................................2411.00100010
...............................................................................................................................................................................................................................................................................................................................TTGATCAGCATCAACAGCCGA----GTCGA...................................................................................................................................................26200.5010000100
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTAGACTC--GTGTAGT--ATGTT--AAGT....2540.25100010
...............................................................................................................................................................................................................................................................................................................................................GCCGA----GTCGATCTAGCCATGCC--------------------------------C......................................................................................................23100.20202000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGGTATGTAGACTC--GTGTAGT--ATG............25200.20404000
.....................................................................................................................................................................................................................................................................................................................................................................................................................TGAACACCTAGATCTCGGAAACTGT..................................................................25100.20200020
.............................................................................................................................................................................................................................................................................................................................................................................................................................TAGATCTCGGAAACTGTA-----AAAGCT......................................................2460.17100010
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................TGGTATGTAGACTC--GTGTAGT--ATGTT--........2660.17100010
..........................................................................................................................................................................................................................................................................................................................................CAACAGCCGA----GTCGATCTAGCCATG.........................................................................................................................................25200.15303000
................................................................................................................................................................................................................................................................................................................................TGATCAGCATCAACAGCCGA----GTCGATC.................................................................................................................................................27200.10202000
........................................................................................................................................................................................................................................................................................................................................................................................................................ACACCTAGATCTCGGAAACTG...................................................................21100.10101000
.....................................................................................................................................................................................................................................................................................................................................................................................................................TGAACACCTAGATCTCGGAAACTG...................................................................24100.10100010
......................................................................................................................................................................................................................................................................................................................................GCATCAACAGCCGA----GTCGATCTAGCCA...........................................................................................................................................27200.10200020
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................AAATTTGGTATGTAGACTC--GTG.....................22200.10202000
..........................................................................................................................................................................................................................................................................................................................................................CGATCTAGCCATGCC--------------------------------CGTCTGTCCG.............................................................................................25110.09100010
......................................................................................................................................................................................................................................................................................................................................................................GCC--------------------------------CGTCTGTCCGTATGAACACCTAG................................................................................26120.08101000
..........................................................................................................................................................................................................................................................................................................................................................CGATCTAGCCATGCC--------------------------------CGTCTGT................................................................................................22140.07100010
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................TAGAGCCACCAAATTTGGTATGTAGA.............................26200.05100100
.................................................................................................................................................................................................................................................................................................................................................................................................................CGTATGAACACCTAGATCTCGGAAAC.....................................................................26200.05110000
............................................................................................................................................................................................................................................................................................................................TTCTTGATCAGCATCAACAGCCG.............................................................................................................................................................23200.05101000
.............................................................................................................................................................................................................................................................................................................................TCTTGATCAGCATCAACAGCCGA----GTCG....................................................................................................................................................27200.05100010
...................................................................................................................................................................................................................................................................................................................................................................................................................TATGAACACCTAGATCTCGGAAA......................................................................23200.05100010
...............................................................................................................................................................................................................................................................................................................................TTGATCAGCATCAACAGCCGA----GTCG....................................................................................................................................................25200.05100010
...........................................................................................................................................................................................................................................................................................................................................................................................................................................TGTA-----AAAGCTAGAGCCACCAAATTTGG.....................................27200.05101000
..........................................................................................................................................................................................................................................................................................................................................CAACAGCCGA----GTCGATCTAGCCA...........................................................................................................................................23200.05100010
.................................................................................................................................................................................................................................................................................................................................................................................................................CGTATGAACACCTAGATCTCG..........................................................................21200.05100010
.......................................................................................................................................................................................................................................................................................................................................CATCAACAGCCGA----GTCGATCTAGCCA...........................................................................................................................................26200.05100010
....................................................................................................................................................................................................................................................................................................................................CAGCATCAACAGCCGA----GTCG....................................................................................................................................................20200.05100010
.............................................................................................................................................................................................................................................................................................................................TCTTGATCAGCATCAACAGCCGA----GT......................................................................................................................................................25200.05100001
droVir3
CTCA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TAAAGTAAATATATTCTTGATCAGCATCAATAGTCGA----GCCGATCTAGCCATGTT--------------------------------C----GTCTGTATGAACGTTAGGATCGCAGAACCTATA-----AGAGCTAGAGACTTGAAATT----------------------------------------SizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
.........................................................................................................................................................................................................................................................................................................................ATATTCTTGATCAGCATCAATAGTC..............................................................................................................................................................25200.204000000000000000000000000400000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................TTCTTGATCAGCATCAATAGTCGA----G.......................................................................................................................................................25200.153000000000000000000000000000300000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................TATATTCTTGATCAGCATCAATA.................................................................................................................................................................23200.102000000000000000000000000000000000000200000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................ATTCTTGATCAGCATCAATAGTCG.............................................................................................................................................................24200.102000000000000000000000000000000000020000000000000000000000000000
...........................................................................................................................................................................................................................................................................................................................ATTCTTGATCAGCATCAAT..................................................................................................................................................................19200.051000000000000000001000000000000000000000000000000000000000000000
................................................................................................................................................................................................................................................................................................................................TGATCAGCATCAATAGTCGA----G.......................................................................................................................................................21200.051000000001000000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................TATATTCTTGATCAGCATCAATAGTC..............................................................................................................................................................26200.051000000000000000000001000000000000000000000000000000000000000000
.......................................................................................................................................................................................................................................................................................................................................................................................................................................AACCTATA-----AGAGCTAGAGACTTG.............................................23200.051000000000010000000000000000000000000000000000000000000000000000
........................................................................................................................................................................................................................................................................................................................................................................................................................................ACCTATA-----AGAGCTAGAGACTTGAAAT.........................................26200.051000000000000100000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................ATCAGCATCAATAGTCGA----G.......................................................................................................................................................19200.051000000000000000000000000100000000000000000000000000000000000000
droMoj3
AATATGCA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGT--CTATTACACCCACTTTT-----AACAAA-AAGGTATGATTAAATGGTTTTG-----------------------------------------TTAAAAGTACATATATTCTTGATCAGCGAC--GAGCTTA----GTCGATATGGCCCTGTC--------------------------------CGTCCGTATGTATGAACGCGTCGATCTCAGAAGATATA-----AGAGCTAGAGACTTGAAATT----------------------------------------SizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
..TATGCA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGGT--CTATTACACCCACTTT...............................................................................................................................................................................................................................................................................2611.001100000
.....................................................................................................................................................................................................................................................................................................................................................................................................................................AGAAGATATA-----AGAGCTAGAGACTTG.............................................25200.102000002
......................................................................................................................................................................................................................................................................................................................................................................................................................................GAAGATATA-----AGAGCTAGAGACTTG.............................................24200.051000001
droGri2
TGGGC------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAA-AGGGTATTCTGGT-----TT--------------------------------------------------------------TGGTCAGAATCAACAGCCGA----ATCAATCTAGCCAAGTT--------------------------------C----GCCCGTATGAACAAAAGGATCTCAGAAACCATA-----AGAGCCAGAGAATAGAGATT----------------------------------------SizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/17/2015 at 10:21 PM