der_433

exon [dere_GLEANR_2722:2]; exon [dere_GLEANR_2722:3]; CDS [Dere\GG17828-cds]; CDS [Dere\GG17828-cds]; intron [Dere\GG17828-in]

##################################################---------------------------------------------------------------------------------------------------------------------------------------################################################## CCAAGACCTACGCCGCCCCCGCTGTTGTGAAGACCTACTCCGCCCCGGCTGTGTCCACCTACACCGCTCCAGTGGTGGCCAAGACTTACTCCGCTCCTGCTGTGTCCACCTACACCGCTCCAGTGGTGGCCAAGACTTACTCCGCTCCTGCTGTGTCCACCTACACCGCTCCAGTGGTGGCCAAGACTTACTCCGCTCCTGCTGTGTCCACCTACTCTGCGCCTGCCGTGTCCGG *****************************************************************************....((...............((.(((......((((((....)))))).....))).)).............))*******************************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M057 embryo	V040 embryo
CCAAGACCTACGCCGCCCCCGCC....................................................................................................................................................................................................................	23	1	1	1.00	1	1	0
...........................................CCCGGCTGTGTCCACCTACACC..........................................................................................................................................................................	22	0	1	1.00	1	1	0
..........CGCCGCCCCCGCTGTTGT...............................................................................................................................................................................................................	18	0	1	1.00	1	0	1
................................ACCTACTCCGCCCCGGCTGTGTCCAC.................................................................................................................................................................................	26	0	1	1.00	1	0	1
...............................GACCTACTCCGCCCCGGCTGT.......................................................................................................................................................................................	21	0	1	1.00	1	0	1
.....................................................................................................................................................................................................CCTGCTGTGTCCACCTACTATTC...............	23	2	1	1.00	1	0	1
...................................................................................................................................................................................................................CGACTCTGCGCCTGCCGTTTCC..	22	2	1	1.00	1	1	0
........................................CGCCCCGGCTGTGTCCACCTACACC..........................................................................................................................................................................	25	0	1	1.00	1	1	0
...........................TGAAGACCTACTCCGCCCC.............................................................................................................................................................................................	19	0	1	1.00	1	1	0
...........................................................................................................................................................................................................GTGTCCACCTACTCTGCGCCT...........	21	0	1	1.00	1	1	0
.....................................................................................................................................................................................................CCTGCTGTGTCCACCTACTCTGC...............	23	0	1	1.00	1	0	1
.......................GTTGTGAAGACCTACTCCGCCCC.............................................................................................................................................................................................	23	0	1	1.00	1	1	0
.........ACGCCGCCCCCGCTGTTGTGAAG...........................................................................................................................................................................................................	23	0	1	1.00	1	1	0
.......................GGTGTGAAGACCTACTCCGCC...............................................................................................................................................................................................	21	1	1	1.00	1	1	0
..............................AGACCTACTCCGCCCCGGCT.........................................................................................................................................................................................	20	0	1	1.00	1	1	0
.......................GTTGTGAAGACCTACTCCGCCC..............................................................................................................................................................................................	22	0	1	1.00	1	1	0
...........................................................................................................................................................................................................GTGTCCACCTACTCTGCGCCTGCCGT......	26	0	1	1.00	1	1	0
.....................................................................................................................................................................................CAAGACTTACTCCGCTCCTGCTGT..............................	24	0	4	0.50	2	1	1
..................................................................................................................................CAAGACTTACTCCGCTCCTGCTGT.................................................................................	24	0	4	0.50	2	1	1
...............................................................................CAAGACTTACTCCGCTCCTGCTGT....................................................................................................................................	24	0	4	0.50	2	1	1
.......................................................................................................GTCCACCTACACCGCTCCAGTGGTGGCC........................................................................................................	28	0	5	0.40	2	2	0
....................................................GTCCACCTACACCGCTCCAGTGGTGGCC...........................................................................................................................................................	28	0	5	0.40	2	2	0
........................................................................................CTCCGCTCCTGCTGTGTCCACCTACACC.......................................................................................................................	28	0	5	0.40	2	2	0
...........................................................................................................................................CTCCGCTCCTGCTGTGTCCACCTACACC....................................................................	28	0	5	0.40	2	2	0
..........................................................................................................................................................GTCCACCTACACCGCTCCAGTGGTGGCC.....................................................	28	0	5	0.40	2	2	0
...............................................................................................................................GGCCAAGACTTACTCCGCTCCTG.....................................................................................	23	0	3	0.33	1	1	0
............................................................................................................................GGCGGCCAAGACTTACTCCGCT.........................................................................................	22	1	3	0.33	1	1	0
..................................................................................................................................................................................GGCCAAGACTTACTCCGCTCCTGC.................................	24	0	3	0.33	1	1	0
...............................................................................................................................................................................GGCGGCCAAGACTTACTCCGCT......................................	22	1	3	0.33	1	1	0
...............................................................................................................................GGCCAAGACTTACTCCGCTCCTGC....................................................................................	24	0	3	0.33	1	1	0
..................................................................................................................................................................................GGCCAAGACTTACTCCGCTCCTG..................................	23	0	3	0.33	1	1	0
.........................................................................GGCGGCCAAGACTTACTCCGCT............................................................................................................................................	22	1	3	0.33	1	1	0
............................................................................GGCCAAGACTTACTCCGCTCCTG........................................................................................................................................	23	0	3	0.33	1	1	0
............................................................................GGCCAAGACTTACTCCGCTCCTGC.......................................................................................................................................	24	0	3	0.33	1	1	0
.......................................................................................................................................CTTACTCCGCTCCTTCTGT.................................................................................	19	1	4	0.25	1	0	1
....................................................................................CTTACTCCGCTCCTGCTGTGTCC................................................................................................................................	23	0	4	0.25	1	1	0
.........................................................................................................................................................................................ACTTACTCCGCTCCTGCTGT..............................	20	0	4	0.25	1	0	1
........................................................................................................................................................................CTCCAGTGGTGGCCAAGACTTACC...........................................	24	1	4	0.25	1	1	0
.......................................................................................................................................................................................AGACTTACTCCGCTCCTGCTGT..............................	22	0	4	0.25	1	0	1
................................................................CGCTCCAGTGGTGGCCAAGACTTACTC................................................................................................................................................	27	0	4	0.25	1	0	1
.......................................................................................................................................................................GCTCCAGTGGTGGCTAAGACTT..............................................	22	1	4	0.25	1	1	0
........................................................................................................................................................................................GACTTACTCCGCTCCTGCTGTGTCC..........................	25	0	4	0.25	1	1	0
................................................................................................................................................................................GTGGCCAAGACTTACTCCCC.......................................	20	1	4	0.25	1	1	0
........................................................................................................................................................................................GACTTACTCCGCTCCTGCTGT..............................	21	0	4	0.25	1	1	0
....................................................................................................................GCTCCAGTGGTGGCCCAGACT..................................................................................................	21	1	4	0.25	1	0	1
.......................................................................................................................................................................................GGATTTACTCCGCTCCTGCTG...............................	21	2	4	0.25	1	1	0
...................................................................................ACTTACTCCGCTCCTGCTGT....................................................................................................................................	20	0	4	0.25	1	0	1
..........................................................................................................................................................................................CTTACTCCGCTCCTGCTGTGTC...........................	22	0	4	0.25	1	1	0
..........................................................................GTGGCCAAGACTTACTCCCC.............................................................................................................................................	20	1	4	0.25	1	1	0
....................................................................................................................................ATACTTACTCCGCTCCTGCTGTGTCC.............................................................................	26	1	4	0.25	1	1	0
...................................................................................................................CGCTCCAGTGGTGGCCAAGACTTACTC.............................................................................................	27	0	4	0.25	1	0	1
...........................................................................................................................................................................................TTACTCCGCTCCTGATGT..............................	18	1	4	0.25	1	0	1
......................................................................................................................................ACTTACTCCGCTCCTGCTGT.................................................................................	20	0	4	0.25	1	0	1
..........................................................................................................................................................................................CTTACTCCGCTCCTTCTGT..............................	19	1	4	0.25	1	0	1
..................................................................................GACTTACTCCGCTCCTGCTGT....................................................................................................................................	21	0	4	0.25	1	1	0
......................................................................................................................................ACTTACTCCGCTCCTGCTGTGT...............................................................................	22	0	4	0.25	1	0	1
........................................................................................................................................TTACTCCGCTCCTGATGT.................................................................................	18	1	4	0.25	1	0	1
.....................................................................................................................................GACTTACTCCGCTCCTGCTGTGC...............................................................................	23	1	4	0.25	1	1	0
.....................................................................................................................................GACTTACTCCGCTCCTGCTGTGTCC.............................................................................	25	0	4	0.25	1	1	0
..................................................................................................................................CAAGACTTACTCCGCTCCTG.....................................................................................	20	0	4	0.25	1	1	0
......................................................................................................................................................................CGCTCCAGTGGTGGCCAAGACTTACTC..........................................	27	0	4	0.25	1	0	1
....................................................................................................................................GGATTTACTCCGCTCCTGCTG..................................................................................	21	2	4	0.25	1	1	0
..................................................................................GACTTACTCCGCTCCTGCTGTGTCC................................................................................................................................	25	0	4	0.25	1	1	0
.................................................................................AGACTTACTCCGCTCCTGCTGT....................................................................................................................................	22	0	4	0.25	1	0	1
..........................................................................................................................................................................................CTTACTCCGCTCCTGCTGT..............................	19	0	4	0.25	1	1	0
..................................................................CTCCAGTGGTGGCCAAGACTTACC.................................................................................................................................................	24	1	4	0.25	1	1	0
.................................................................GCTCCAGTGGTGGCCCAGACT.....................................................................................................................................................	21	1	4	0.25	1	0	1
........................................................................................................................................TTACTCCGCTCCTGCTGT.................................................................................	18	0	4	0.25	1	0	1
.........................................................................................................................................................................................ACTTACTCCGCTCCTGCTGTGT............................	22	0	4	0.25	1	0	1
....................................................................................CTTACTCCGCTCCTGCTGTGTC.................................................................................................................................	22	0	4	0.25	1	1	0
.....................................................................................TTACTCCGCTCCTGCTGT....................................................................................................................................	18	0	4	0.25	1	0	1
..................................................................................GACTTACTCCGCTCCTGCTGTGT..................................................................................................................................	23	0	4	0.25	1	0	1
........................................................................................................................................................................................GACTTACTCCGCTCCTGCTGTGC............................	23	1	4	0.25	1	1	0
..........................................................................................................................................................................................CTTACTCCGCTCCTGCTGTGTCC..........................	23	0	4	0.25	1	1	0
.....................................................................................................................................................................................CAAGACTTACTCCGCTCCTG..................................	20	0	4	0.25	1	1	0
.................................................................GCTCCAGTGGTGGCTAAGACTT....................................................................................................................................................	22	1	4	0.25	1	1	0
.................................................................................ATACTTACTCCGCTCCTGCTGTGTCC................................................................................................................................	26	1	4	0.25	1	1	0
...........................................................................................................................................................................................TTACTCCGCTCCTGCTGT..............................	18	0	4	0.25	1	0	1
.......................................................................................................................................CTTACTCCGCTCCTGCTGT.................................................................................	19	0	4	0.25	1	1	0
....................................................................................................................GCTCCAGTGGTGGCTAAGACTT.................................................................................................	22	1	4	0.25	1	1	0
..................................................................................GACTTACTCCGCTCCTGCTGTGC..................................................................................................................................	23	1	4	0.25	1	1	0
........................................................................................................................................................................................GACTTACTCCGCTCCTGCTGTGT............................	23	0	4	0.25	1	0	1
...............................................................................CAAGACTTACTCCGCTCCTG........................................................................................................................................	20	0	4	0.25	1	1	0
.....................................................................................................................CTCCAGTGGTGGCCAAGACTTACC..............................................................................................	24	1	4	0.25	1	1	0
.......................................................................................................................................................................GCTCCAGTGGTGGCCCAGACT...............................................	21	1	4	0.25	1	0	1
....................................................................................................................................AGACTTACTCCGCTCCTGCTGT.................................................................................	22	0	4	0.25	1	0	1
.............................................................................................................................GTGGCCAAGACTTACTCCCC..........................................................................................	20	1	4	0.25	1	1	0
....................................................................................CTTACTCCGCTCCTGCTGT....................................................................................................................................	19	0	4	0.25	1	1	0
.......................................................................................................................................CTTACTCCGCTCCTGCTGTGTCC.............................................................................	23	0	4	0.25	1	1	0
.....................................................................................................................................GACTTACTCCGCTCCTGCTGT.................................................................................	21	0	4	0.25	1	1	0
.....................................................................................TTACTCCGCTCCTGATGT....................................................................................................................................	18	1	4	0.25	1	0	1
...................................................................................ACTTACTCCGCTCCTGCTGTGT..................................................................................................................................	22	0	4	0.25	1	0	1
.......................................................................................................................................................................................ATACTTACTCCGCTCCTGCTGTGTCC..........................	26	1	4	0.25	1	1	0
....................................................................................CTTACTCCGCTCCTTCTGT....................................................................................................................................	19	1	4	0.25	1	0	1
.......................................................................................................................................CTTACTCCGCTCCTGCTGTGTC..............................................................................	22	0	4	0.25	1	1	0
.....................................................................................................................................GACTTACTCCGCTCCTGCTGTGT...............................................................................	23	0	4	0.25	1	0	1
.................................................................................GGATTTACTCCGCTCCTGCTG.....................................................................................................................................	21	2	4	0.25	1	1	0
.......................................................................................................GGCTACCTACACCGCTCCAGTGGT............................................................................................................	24	2	5	0.20	1	1	0
..........................................................................................................................................................GTCCACCTACACCGCTCCAGTGGGGGCC.....................................................	28	1	5	0.20	1	1	0
....................................................................................................TGTGTCCACCTACACCGCTCCAGT...............................................................................................................	24	0	5	0.20	1	0	1
....................................................................................................................................AGACTTACTCCGCTCCTGC....................................................................................	19	0	5	0.20	1	1	0
.........................................................................................................................................................TGTCCACCTACACCGCTCCAGTGGT.........................................................	25	0	5	0.20	1	1	0
....................................................................................................ATCGTCCACCTACACCGCTCCAGT...............................................................................................................	24	3	5	0.20	1	1	0
.....................................................................................................................................GACTTACTCCGCTCCTGCT...................................................................................	19	0	5	0.20	1	1	0
........................................................................................................................................................................................GACTTACTCCGCTCCTGCTGC..............................	21	1	5	0.20	1	1	0
..........................................................................................................................................................GTCCACCTACACCGCTCCAGTGGT.........................................................	24	0	5	0.20	1	1	0
....................................................GTCCACCTACACCGCTCCAGTGGGGGCC...........................................................................................................................................................	28	1	5	0.20	1	1	0
.......................................................................................ACTTCGCTCCTGCTGTGTCCACCTACACC.......................................................................................................................	29	1	5	0.20	1	1	0
....................................................................................................................GCTCCAGTGGTGGCCAAGAC...................................................................................................	20	0	5	0.20	1	1	0
.........................................................................................................CCACCTACACCGCTCCAGTGGTGGCC........................................................................................................	26	0	5	0.20	1	1	0
..................................................GTGTCCACCTACACCGCTCCAGTGGC...............................................................................................................................................................	26	1	5	0.20	1	1	0
.................................................................................AGACTTACTCCGCTCCTGCC......................................................................................................................................	20	1	5	0.20	1	1	0
..........................................................................................................................................................GTCCACCTACACCGCTCCAGT............................................................	21	0	5	0.20	1	0	1
.............................................................................................................CTACACTGCTCCAGTGGTGGCC........................................................................................................	22	1	5	0.20	1	1	0
....................................................................................................................GCTCCAGTGGTGGCCCAGAC...................................................................................................	20	1	5	0.20	1	0	1
.......................................................................................................................................................................................AGACTTACTCCGCTCCTGC.................................	19	0	5	0.20	1	1	0
....................................................GTCCACCTACACCGCTCCAGTGGT...............................................................................................................................................................	24	0	5	0.20	1	1	0
.....................................................................................................GTGTCCACCTACACCGCTCCAGTGGC............................................................................................................	26	1	5	0.20	1	1	0
..........................................................................................................................................................GGCTACCTACACCGCTCCAGTGGT.........................................................	24	2	5	0.20	1	1	0
......................................................CCACCTACACCGCTCCAGTGGTGGCC...........................................................................................................................................................	26	0	5	0.20	1	1	0
.....................................................................................................................................GACTTACTCCGCTCCTGCTGC.................................................................................	21	1	5	0.20	1	1	0
.......................................................................................................GTCCACCTACACCGCTCCAGTGGT............................................................................................................	24	0	5	0.20	1	1	0
.......................................................................................................................................................................GCTCCAGTGGTGGCCCAGAC................................................	20	1	5	0.20	1	0	1
.................................................TGTGTCCACCTACACCGCTCCAGT..................................................................................................................................................................	24	0	5	0.20	1	0	1
.................................................ATCGTCCACCTACACCGCTCCAGT..................................................................................................................................................................	24	3	5	0.20	1	1	0
..................................................................................GACTTACTCCGCTCCTGCT......................................................................................................................................	19	0	5	0.20	1	1	0
................................................................................................................................................................CTACACTGCTCCAGTGGTGGCC.....................................................	22	1	5	0.20	1	1	0
..........................................................................................................................................ACTTCGCTCCTGCTGTGTCCACCTACACC....................................................................	29	1	5	0.20	1	1	0
........................................................................................................................................................GTGTCCACCTACACCGCTCCAGTGGC.........................................................	26	1	5	0.20	1	1	0
.......................................................................................................................................................................GCTCCAGTGGTGGCCAAGAC................................................	20	0	5	0.20	1	1	0
............................................................................................................................................................CCACCTACACCGCTCCAGTGGTGGCC.....................................................	26	0	5	0.20	1	1	0
..........................................................CTACACTGCTCCAGTGGTGGCC...........................................................................................................................................................	22	1	5	0.20	1	1	0
.................................................................GCTCCAGTGGTGGCCCAGAC......................................................................................................................................................	20	1	5	0.20	1	0	1
....................................................................................................................................AGACTTACTCCGCTCCTGCC...................................................................................	20	1	5	0.20	1	1	0
.......................................................................................................................................................ATCGTCCACCTACACCGCTCCAGT............................................................	24	3	5	0.20	1	1	0
.................................................................................AGACTTACTCCGCTCCTGC.......................................................................................................................................	19	0	5	0.20	1	1	0
.......................................................................................................................................................TGTGTCCACCTACACCGCTCCAGT............................................................	24	0	5	0.20	1	0	1
..................................................................................GACTTACTCCGCTCCTGCTGC....................................................................................................................................	21	1	5	0.20	1	1	0
...................................................TGTCCACCTACACCGCTCCAGTGGT...............................................................................................................................................................	25	0	5	0.20	1	1	0
....................................................GGCTACCTACACCGCTCCAGTGGT...............................................................................................................................................................	24	2	5	0.20	1	1	0
.......................................................................................................................................................................................AGACTTACTCCGCTCCTGCC................................	20	1	5	0.20	1	1	0
....................................................GTCCACCTACACCGCTCCAGT..................................................................................................................................................................	21	0	5	0.20	1	0	1
.......................................................................................................GTCCACCTACACCGCTCCAGTGGGGGCC........................................................................................................	28	1	5	0.20	1	1	0
........................................................................................................................................................................................GACTTACTCCGCTCCTGCT................................	19	0	5	0.20	1	1	0
.......................................................................................................GTCCACCTACACCGCTCCAGT...............................................................................................................	21	0	5	0.20	1	0	1
.................................................................GCTCCAGTGGTGGCCAAGAC......................................................................................................................................................	20	0	5	0.20	1	1	0
......................................................................................................TGTCCACCTACACCGCTCCAGTGGT............................................................................................................	25	0	5	0.20	1	1	0
............................................................................................GCTCCTGCTGTGTCCACCTACACCGCTCC..................................................................................................................	29	0	6	0.17	1	1	0
................................................................................................................................................CGCCTGCTGTGTCCACCTACACC....................................................................	23	1	6	0.17	1	1	0
......................................................................................TACTCCGCTCCTGCTGTGTC.................................................................................................................................	20	0	6	0.17	1	1	0
...................................................................................................................................................CTGCTGTGTCCACCTACACC....................................................................	20	0	6	0.17	1	1	0
............................................................................................GCTCCTGCTGTGTCCACCTACACC.......................................................................................................................	24	0	6	0.17	1	1	0
................................................................................................CTGCTGTGTCCACCTACACC.......................................................................................................................	20	0	6	0.17	1	1	0
.........................................................................................................................................TACTCCGCTCCTGCTGTGTC..............................................................................	20	0	6	0.17	1	1	0
................................................................................................CTGCTGTGTCCACCTACACCGC.....................................................................................................................	22	0	6	0.17	1	0	1
............................................................................................................................................................................................TACTCCGCTCCTGCTGTGTC...........................	20	0	6	0.17	1	1	0
................................................................................................................................................CTCCTGCTGTGTCCACCTACACC....................................................................	23	0	6	0.17	1	1	0
...............................................................................................................................................GCTCCTGCTGTGTCCACCTACACC....................................................................	24	0	6	0.17	1	1	0
.................................................................................................................................................TCCTGCTGTGTCCACCTACACC....................................................................	22	0	6	0.17	1	0	1
...................................................................................................................................................CTGCTGTGTCCACCTACACCGC..................................................................	22	0	6	0.17	1	0	1
....................................................................................................................................................TCCTGTGTCCACCTACACCG...................................................................	20	1	6	0.17	1	0	1
..............................................................................................TCCTGCTGTGTCCACCTACACC.......................................................................................................................	22	0	6	0.17	1	0	1
.............................................................................................CTCCTGCTGTGTCCACCTACACC.......................................................................................................................	23	0	6	0.17	1	1	0
...............................................................................................................................................GCTCCTGCTGTGTCCACCTACACCGCTCC...............................................................	29	0	6	0.17	1	1	0
.............................................................................................CGCCTGCTGTGTCCACCTACACC.......................................................................................................................	23	1	6	0.17	1	1	0
.................................................................................................TCCTGTGTCCACCTACACCG......................................................................................................................	20	1	6	0.17	1	0	1
...................................................................................................................................................................................................CTCCTGCTGTGTCCACCTA.....................	19	0	7	0.14	1	1	0
................................................................................................................................................CTCCTGCTGTGTCCACCTA........................................................................	19	0	7	0.14	1	1	0
.............................................................................................CTCCTGCTGTGTCCACCTA...........................................................................................................................	19	0	7	0.14	1	1	0
...........................................................................................GGTCCCTGCTGTGTCCACCTACACC.......................................................................................................................	25	3	9	0.11	1	1	0
........................................GGTCCCTGCTGTGTCCACCTACACC..........................................................................................................................................................................	25	3	9	0.11	1	1	0
.................................................TGTGTCCACCTACACCGCTC......................................................................................................................................................................	20	0	9	0.11	1	1	0
....................................................................................................TGTGTCCACCTACACCGCTC...................................................................................................................	20	0	9	0.11	1	1	0
.......................................................................................................................................................TGTGTCCACCTACACCGCTC................................................................	20	0	9	0.11	1	1	0
..............................................................................................................................................GGTCCCTGCTGTGTCCACCTACACC....................................................................	25	3	9	0.11	1	1	0
.....................................................................................................GTGTCCACCTACACCGCTCC..................................................................................................................	20	0	10	0.10	1	1	0
........................................................................................................................................................GTGTCCACCTACACCGCTC................................................................	19	0	10	0.10	1	1	0
..................................................GTGTCCACCTACACCGCTCC.....................................................................................................................................................................	20	0	10	0.10	1	1	0
.....................................................................................................GTGTCCACCTACACCGCTC...................................................................................................................	19	0	10	0.10	1	1	0
..................................................GTGTCCACCTACACCGCTC......................................................................................................................................................................	19	0	10	0.10	1	1	0
........................................................................................................................................................GTGTCCACCTACACCGCTCC...............................................................	20	0	10	0.10	1	1	0
...........................................................................TGTCAAAGACTTACTTCGC.............................................................................................................................................	19	3	14	0.07	1	1	0
..............................................................................................................................TGTCAAAGACTTACTTCGC..........................................................................................	19	3	14	0.07	1	1	0
.................................................................................................................................................................................TGTCAAAGACTTACTTCGC.......................................	19	3	14	0.07	1	1	0

GGTTCTGGATGCGGCGGGGGCGACAACACTTCTGGATGAGGCGGGGCCGACACAGGTGGATGTGGCGAGGTCACCACCGGTTCTGAATGAGGCGAGGACGACACAGGTGGATGTGGCGAGGTCACCACCGGTTCTGAATGAGGCGAGGACGACACAGGTGGATGTGGCGAGGTCACCACCGGTTCTGAATGAGGCGAGGACGACACAGGTGGATGAGACGCGGACGGCACAGGCC *******************************************************************************....((...............((.(((......((((((....)))))).....))).)).............))*****************************************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	V108 head	V040 embryo
.....CGGATGCGGCGGGGGCGACAA.................................................................................................................................................................................................................	21	1	2	0.50	1	1	0
......................................................................................................ACAGGTGGTTGGGGCGAGA..................................................................................................................	19	3	20	0.05	1	0	1
.........................................................................................................................................................ACAGGTGGTTGGGGCGAGA...............................................................	19	3	20	0.05	1	0	1
...................................................ACAGGTGGTTGGGGCGAGA.....................................................................................................................................................................	19	3	20	0.05	1	0	1

Species	Coordinate	ID	Alignment
droEre2	scaffold_4690:12851382-12851616 -	der_433	CCAAGACCTACGCCGCCCC---------------------------------------------CGCTGT------------------------TGTGAAGAC------CTACTCCGCCCCGGCTGTG----TCCACCTACA---------------------------------------------------------------CCGCTCCAGTGGTGGCCAAGAC---TTACTC-----------------------------------------------------CGCTCCTGCTGTGTCCACCTACACCGCTCCAGTGG------------------------TGG------------------------------------CCAAGACTTACTCC------------------------GCTCCTGCT-------GTGTCCACCTACACCGCT----------------------------------------CCAGTGG---T--------------------------GG-CCAAGACTTACTCCGCTCCTGCTGTGTCCACCTACTCTGC---------------GCCTGCCGTG---------------------------------TCCGG
droYak3	X:8332013-8332220 +		C-AAAACCTACACCGCTCC---------------------------------------------CGTTGT------------------------GGCCAAGAC------CTACGTTGCTCCTGCTGTG----TCCACCTACA---------------------------------------------------------------CCGCTCCCGCTGTGGCCAAGAC---CTACGT-----------------------------------------------------TGCTCCTGCTGTGTCCACCTACACCGCTCCCGCTG------------------------TGG------------------------------------CCAAGACCTACGCC------------------------GCTCCTGCT-------GTGTCCACCTACACCGCT----------------------------------------CCCGTTG---T--------------------------GG-CCAAGACCTACGTTGCTC---------------------------------------CTGCTGTG---------------------------------TCC--
droSec2	scaffold_20:683989-684227 +		--AAGACCTACTCGGCTCC---------------------------------------------TGCTGT------------------------GTCCA---C------CTACTCTGCTCCTGCCGTG----TCCGGATACT---CT------------------------------------------------CAGACCTACACCGCTCCCGCTGTGGTCAAGAC---CTACTC-----------------------------------------------------CGCCCCAGCTGTCTCCAGCTACACCGCTCCCGCTG------------------------TGG------------------------------------TCAAGAC-TACTCC------------------------GC-CCAGCT-------GTGTCCACCTACACCGCC----------------------------------------CC-GTGG---TGACTAAGAACTACACGCTCCCGTTGTG-GTCAA-AC------------------------CTACACCGC---------------T-CTGCTGTG---------------------------------TCCAC
droSim2	x:13291491-13291732 +		-----ACCTACACCGCCCC---------------------------------------------CGTGGT------------------------GACCAAGGC------CTACACTGCTCCTGTGGTG----ACCA------------------------------------------------------------AGACCTACACCGCCCCCGCCGTGGTTAAGAC---CTACTC-----------------------------------------------------CGCCCCAGCTGTGTCCACCTACACCGCTCCAGCTG------------------------TAT------------------------------------CC---ACCTACACC------------------------GCTCCCGCT-------GTGTCCACCTACACCGCC----------------------------------------CCAGTGG---T--------------------------GA-CCAAGACCTACTCCGCTCCGGCTGTGTCCAGCTACTCGGC---------------TCCCGCTGTGGTCAGCAGCTAC---------------------TCCGG
dm3	chrX:14079219-14079454 +		CTCAGACCTACACCGCTCC---------------------------------------------CGCTGT------------------------GGTCAAGAC------CTACTCCGCCCCAGCTGTG----TCCACCTACA---------------------------------------------------------------CCGCCCCAGTGGTGACCAAGAC---CTACAC-----------------------------------------------------CGCTCCC------------------------GTTG------------------------TGG------------------------------------CCAAGACCTACACT------------------------GCTCCCGCC-------GTGTCCACCTACACCGCTCCCGTTGTGGCCAAGACCTATAC----CGCTCCCGCCGTG---------------------------------------GTCAAGACCTACTCTGCCCCAGCTGTGTCCACCTACTCTGC---------------TCCTGCTGTG---------------------------------TCC--
droEug1	scf7180000409008:488796-489032 +		TTAAGGCTTACACCGCCCC---------------------------------------------CGTGGT------------------------GGCCAAGAC------CTATGTTGCTCCTGCTGTG----TCTACCTACACCGC---TC------------------------------------------------------CCG---CCGTTGTGGCCAAGAC---CTACAC-----------------------------------------------------CGCTCCCGTGGTTAAGGCTTACACCGCCCCCGTGG------------------------TGG------------------------------------CCAAGACCTATGTTGCTCCAGCTGTCTCCACCTACACCGCTCCAGTG-------GTTAAGACTTACACCGCT----------------------------------------CCCGTGG---T--------------------------TG-CTAAGAC------------------------CTACACCGC---------------TCCCGCTGTG---------------------------------GTGA-
droBia1	scf7180000302041:1122808-1123024 +		CCAAGACCTACACCGCTCC---------------------------------------------CGCCGT------------------------GGTGAAGAC------CTACTCCGCCCCGGCTGCG----TCCACCTACA---------------------------------------------------------------CCGCTCCCGTGGTGGCCAAGAC---CTACAC-----------------------------------------------------CGCCCCAGTGGTGACCA------------------------------------------------------------------------------------AGTCCTACACC------------------------GCTCCCGTGGTGACCA----AGACCTACACCGCTCCCGTGGTGACCAAGACCTACAC----CGCTCCCGCCGTG---------------------------------------GTGAAGACCTACTCTGCCC---------------------------------------CGGCTGTG---------------------------------TCCAG
droTak1	scf7180000414562:88213-88450 -		TCTAG--CTACTCCGCCCC---------------------------------------------CGCTGT------------------------TGTGAAGAC------CTACTCCGCCCCAGCTGTG----TCCACCTACA---------------------------------------------------------------CTGCTCCTGTGGTGACCAAGGC---TTACAC-----------------------------------------------------CGCTCCTGTGGTGACCA------------------------------------------------------------------------------------AGGCTTACACC------------------------GCTCCTGTGGTGACCA----AGACCTACACCGCCCCCGTGGTGGCTAAGACCTACACTGCT-------------CCCGCTG---T--------------------------G-GTGAAGACCTACACCGCCCCGGCTGTGTCCACCTACACCGC---------------CCCGGCTGTG---------------------------------TCCT-
droEle1	scf7180000491011:405492-405715 +		CCCAGTCCTACACCGCTCC---------------------------------------------CGCTGT------------------------GGTTAAGAC------CTACTCCGCCCCTGCTGTG----TCCACCTACT---------------------------------------------------------------CCT------------CCAAGAC---CTACTC-----------------------------------------------------CGCCCCAGCTGTGTCCACCTACACCGCTCCCGTGG------------------------TGA------------------------------------CCA-------------------------------------------------------AGGCTTACTCCGCTCCCGTGGTCACTAAGACCTACAC----TGCTCCCGCCGTG---------------------------------------GTGAAGACCTACTCCGCCCCAGCAGTGTCCACCTACTCCGC---------------CCCAGCTGTG---------------------------------TCC--
droRho1	scf7180000776513:42720-42969 -		CTAAGACCTACACTGCCCCCGT------------------GGTGACTAAGACCTACACC------------------------GCTCCCGCCGTGGTGAAGAC------CTACTCCGCCCCAGCTGTG----TCCACCTACT---------------------------------------------------------------CCGCCCCAGCAGTGTCC-----------------------------------------------------------------------------------A------------------------CCTACTCCGCCCCAGCTGTGT------------------------------------CC---ACCTACTCC------------------------GCCCCAGCT-------GTGTCCACCTACACCGCC----------------------------------------CCCGTGG---T--------------------------GG-CCAAGACCTACT---------------CCAGCTACTCCGC---------------TCCCGCTGTGGTCAGCAGCTACTCCGGATCTTCGGGCACCGTGTACGG
droFic1	scf7180000454073:920144-920402 -		CCAAGACCTACACCGCTCC---------------------------------------------GGCTGT------------------------GGTCAAGAG------CTACTCCGCTCCAGCTGTG----TCCTCCTACA---CC------------------------------------------------CAGGCCTACACCGCTCCCGCTGTGGTCAAGTC---CTACAC-----------------------------------------------------CGCTCCCGCTGTGTCCAGCTACTCCGCCCCGGCTGTGTCCTCCTACACC------------G------------------------------------CCAAGACCTACACC------------------------GCTCCCGCT-------GTCTCCTCCTACACCGCT----------------------------------------CCCGCTG---T--------------------------T-GTGAAGACCTACTCCGCCCCAGCCGTGTCCACCTACTCCGC---------------ACCAGCTGTG---------------------------------TCCAG
droKik1	scf7180000302517:410151-410382 -		CCAAGACCTACTCGGCGCC---------------------------------------------CGCTGT------------------------GGTCAAGAG------CTACTCCGCCCCGGCTGTG----TCCAGCTACT---------------------------------------------------------------CGGCTCCCGCTGTTGTGAAGAC---TTACAC-----------------------------------------------------CGCTCCCGCTGTCTCCCACTACACTGCTCCGGCTG------------------------TGA------------------------------------CCAAGACCTACTCG------------------------GCTCCAGCT-------GTGTC---CTACTCTGCC----------------------------------------CCGGCTG---T--------------------------GG-TTAAGACCTACTCTGCCCCAGCTGTGTCCAGCTACTCCGC---------------TCCTGCCGTG---------------------------------TCCCA
droAna3	scaffold_13047:1598981-1599222 +		CTAAGACCTACACTGCTCC---------------------------------------------TGCTGTCTCCACCTACTCGGCTCCTGCTGTGGTCAAGAC------CTACACTGCCCCAGTTGTG----GCCA---------------------------------------------------------------------------------------AGAC---CTACAC-----------------------------------------------------TGCCCCAGTTGTGACCAA---GA------------------CCTACACTGCCCCAGTTGTGG------------------------------------CCAAGACCTACACT------------------------GCTCCTGCTGTGGTCA----AGACCTACACCGCTCCTGTGGTGGCCAAGACCTACAC----CGCTCCCGCCGTG---------------------------------------GTCAAGAC------------------------CTACTCCGC---------------CCCCGCCGTC---------------------------------TCC--
droBip1	scf7180000396740:395512-395755 +		CCAAGACCTACACCGCTCC---------------------------------------------TGCCGT------------------------GGTCAAGAC------CTACACCGCCCCTGTGGTG----GCCA------------------------------------------------------------AGACCTACACCGCTCCTGCCGTGGTCAAGAC---CTACAC-----------------------------------------------------CGCCCCTGTGGTGACCAAG---------------------GCCTACACCGCTCCCGCCGTAG------------------------------------TCAAGACCTACTCT------------------------GCCCCCGCC-------GTCTCCACCTACACCGCT----------------------------------------CCCGCTGTGGT--------------------------GG-CTAAGACCTACTCCGCCCCGGCCGTGTCCACCTACTCCGC---------------CCCGGCTGTG---------------------------------TCCAC
dp5	XL_group1e:6159419-6159655 -		--AAGAGCTATTCCGCCCC---------------------------------------------AGCCGT------------------------GACT-------------------------------------TCTTACA---CG------------------------------------------------A---------------------------AGAC---CTACTCAGCCCCAGCCGTGACCTCCTACACTGCTCCCGCTGTTGTGAAGACCTACTCCG--CGCCAGCCGTGACTTCCTACACTGCTCCCGCTG------------------------TTG------------------------------------TTAAGACCTACTCA------------------------GCCCCAGCC-------GTGTCCTCCTACACCGCT----------------------------------------CCAGCTG---T--------------------------GT-CC---ACCTACTCGGCACCTGCCGTATCTACCTACTCGGC---------------GCCTGCCGTA---------------------------------TCC--
droPer2	scaffold_21:1126572-1126808 -		--AAGAGCTATTCCGCCCC---------------------------------------------AGCCGT------------------------GACT-------------------------------------TCTTACA---CG------------------------------------------------A---------------------------AGAC---CTACTCAGCCCCAGCCGTGACCTCCTACACTGCTCCCGCTGTCGTGAAGACCTACTCCG--CGCCATCCGTGACTTCCTACACTGCTCCCGCTG------------------------TTG------------------------------------TAAAGACCTACTCA------------------------GCCCCAGCC-------GTGTCCTCCTACACCGCT----------------------------------------CCAGCTG---T--------------------------GT-CC---ACCTACTCGGCACCTGCCGTATCCACCTACTCGGC---------------GCCTGCCGTA---------------------------------TCC--
droWil2	scf2_1100000004511:6001036-6001234 +		CCAAGACATATGCCGCTCC---------------------------------------------AGCTGT------------------------CCA------------CTATGCTGCTCCCGCTCCAGCTGTCCAC-TATGCTGC---TC------------------------------------------------------CCGCTCCAGTTGTGGCCAAGACTGTCTATGC-----------------------------------------------------TGCTCCT------------------GCCCCAGTTG------------------------TGGCCAAGACTTACTACTCTGCTCCCGCTCCAGTTGTGGCCAAGACA----------------------------------------------GTG-------------------------------------------------------------------------------------------------------TACTCTGCCC------------------CCGCTCCAGTTGTTGCTGCCCCA------------------------------------------GT
droVir3	scaffold_13049:13103545-13103782 +		CTTATCCCGCAGCAGCTCC---------------------------------------------AGCAAT------------------------TGCTAAGGTGGCCACCTATGCAGCACCAGCTGTG----GCCACTTATTCCGCTGCGCCCGCCACAAGCTATTCCAGCTCTGGACATGGCGCCATTTCTCATCAGTA---------------------------------------------------------------------------------CGTCTCCA--AGCCGGCTGTA---------------------------------------------------------------------------------------------------------------------------------------AGTA----CAATCTCCGCTGCTCCAGCGATTGCCAAG-------------------------------G---T--------------------------GG-C---CAGCTATGCAGCACCCGCCATATCCTCCTACTCTGC------------TGCTCCAGCTATC---------------------------------ACTCA
droMoj3	scaffold_6540:1840543-1840753 +		CCCA---CTATGCTGCCCC---------------------------------------------TCCTGT------------------------GGTCAAGAC------T---GTTGCTCCCGCTTAC----TCCGCCTATG---------------------------------------------------------------CTGCTCCTGCTGTCATCAAGAC---T---GT-----------------------------------------------------TGCTCCCGCTTACTCCACCTATGCTGCTCCGGCTG------------------------TGG------------------------------------TCAAGACT---GTG------------------------GGTCCTGCT-------TACTCCACCTATGCTGCT----------------------------------------CCAGCTA---------------------------------C---CCACTATGCTGCTCCAGCTG--TCCA-CTATGCTGC---------------TCCAGCTGT-----------------------------------CCA-
droGri2	scaffold_15081:1340973-1341174 -		A---GAGCTATGCTGCCCCCAGCAACGAGTACCTGCCACCCGTGCAGCAGACATACAGTGCGCCGGTCGT------------------------GCAGCAGAC------CTATTCCG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTCCAGCTGTCT---CCTACGCCGCACCCTCGG------------------------TTG------------------------------------G------CTACTCG-----------------------------TCTG-------GTGGTGGCTCATACTCGT----------------------------------------CCGGTGG---T--------------------------GG-CTCATAC----TCGTCA--GGCGGTGGC---TCATACTCG---------------TCCGGCGGTG---------------------------------GA-GG

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droEre2

CCAAGACCTACGCCGCCCC---------------------------------------------CGCTGT------------------------TGTGAAGAC------CTACTCCGCCCCGGCTGTG----TCCACCTACA---------------------------------------------------------------CCGCTCCAGTGGTGGCCAAGAC---TTACTC-----------------------------------------------------CGCTCCTGCTGTGTCCACCTACACCGCTCCAGTGG------------------------TGG------------------------------------CCAAGACTTACTCC------------------------GCTCCTGCT-------GTGTCCACCTACACCGCT----------------------------------------CCAGTGG---T--------------------------GG-CCAAGACTTACTCCGCTCCTGCTGTGTCCACCTACTCTGC---------------GCCTGCCGTG---------------------------------TCCGG	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
CCAAGACCTACGCCGCCCC---------------------------------------------CGCC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0
......................................................................................................................CCCGGCTGTG----TCCACCTACA---------------------------------------------------------------CC...................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0
..........CGCCGCCCC---------------------------------------------CGCTGT------------------------TGT.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	1	0	0	0
.....................................................................................................AC------CTACTCCGCCCCGGCTGTG----TCCAC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	0	0	1	0	0	0
....................................................................................................GAC------CTACTCCGCCCCGGCTGT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	1	0	0	0
...................................................................................................................CGCCCCGGCTGTG----TCCACCTACA---------------------------------------------------------------CC...................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0	0
................................................................................................TGAAGAC------CTACTCCGCCCC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	1	1.00	1	0	1	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTCCACCTACTCTGC---------------GCCT............................................	21	1	1.00	1	0	1	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTGCTGTGTCCACCTACTCTGC---------------................................................	23	1	1.00	1	0	0	0	1	0	0	0
....................................................................GT------------------------TGTGAAGAC------CTACTCCGCCCC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0
.........ACGCCGCCCC---------------------------------------------CGCTGT------------------------TGTGAAG.............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0	0
...................................................................................................AGAC------CTACTCCGCCCCGGCT.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0	0
....................................................................GT------------------------TGTGAAGAC------CTACTCCGCCC..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTCCACCTACTCTGC---------------GCCTGCCGT.......................................	26	1	1.00	1	0	1	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGACTTACTCCGCTCCTGCTGT..............................................................................	24	4	0.50	2	0	1	0	1	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................CAAGACTTACTCC------------------------GCTCCTGCT-------GT.......................................................................................................................................................................................................	24	4	0.50	2	0	1	0	1	0	0	0
.............................................................................................................................................................................................................................CAAGAC---TTACTC-----------------------------------------------------CGCTCCTGCTGT.....................................................................................................................................................................................................................................................................................................................................................	24	4	0.50	2	0	1	0	1	0	0	0
.............................................................................................................................................................................................................................................................................................................GTCCACCTACACCGCTCCAGTGG------------------------TGG------------------------------------CC.............................................................................................................................................................................................................................................................	28	5	0.40	2	0	2	0	0	0	0	0
...............................................................................................................................G----TCCACCTACA---------------------------------------------------------------CCGCTCCAGTGGTGGCC....................................................................................................................................................................................................................................................................................................................................................................................................................................	28	5	0.40	2	0	2	0	0	0	0	0
.........................................................................................................................................................................................................................................CTC-----------------------------------------------------CGCTCCTGCTGTGTCCACCTACACC........................................................................................................................................................................................................................................................................................................................................	28	5	0.40	2	0	2	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................CTCC------------------------GCTCCTGCT-------GTGTCCACCTACACC..........................................................................................................................................................................................	28	5	0.40	2	0	2	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCACCTACACCGCT----------------------------------------CCAGTGG---T--------------------------GG-CC.....................................................................................................	28	5	0.40	2	0	2	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................GG------------------------------------CCAAGACTTACTCC------------------------GCTCCTG..................................................................................................................................................................................................................	23	3	0.33	1	0	1	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GG-CCAAGACTTACTCCGCTCCTGC.................................................................................	24	3	0.33	1	0	1	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................GG------------------------------------CCAAGACTTACTCC------------------------GCTCCTGC.................................................................................................................................................................................................................	24	3	0.33	1	0	1	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GG-CCAAGACTTACTCCGCTCCTG..................................................................................	23	3	0.33	1	0	1	0	0	0	0	0
..........................................................................................................................................................................................................................GGCCAAGAC---TTACTC-----------------------------------------------------CGCTCCTG.........................................................................................................................................................................................................................................................................................................................................................	23	3	0.33	1	0	1	0	0	0	0	0
..........................................................................................................................................................................................................................GGCCAAGAC---TTACTC-----------------------------------------------------CGCTCCTGC........................................................................................................................................................................................................................................................................................................................................................	24	3	0.33	1	0	1	0	0	0	0	0
..................................................................................................................................................................................................................................C---TTACTC-----------------------------------------------------CGCTCCTGCTGTGTCC.................................................................................................................................................................................................................................................................................................................................................	23	4	0.25	1	0	1	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTTACTCCGCTCCTGCTGT..............................................................................	20	4	0.25	1	0	0	0	1	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................CT----------------------------------------CCAGTGG---T--------------------------GG-CCAAGACTTACC...........................................................................................	24	4	0.25	1	0	1	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGACTTACTCCGCTCCTGCTGT..............................................................................	22	4	0.25	1	0	0	0	1	0	0	0
..............................................................................................................................................................................................................CGCTCCAGTGGTGGCCAAGAC---TTACTC-----------------------------------------------------.................................................................................................................................................................................................................................................................................................................................................................	27	4	0.25	1	0	0	0	1	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTACTCCGCTCCTGCTGTGTCC..........................................................................	25	4	0.25	1	0	1	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTACTCCGCTCCTGCTGT..............................................................................	21	4	0.25	1	0	1	0	0	0	0	0
.................................................................................................................................................................................................................................AC---TTACTC-----------------------------------------------------CGCTCCTGCTGT.....................................................................................................................................................................................................................................................................................................................................................	20	4	0.25	1	0	0	0	1	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTACTCCGCTCCTGCTGTGTC...........................................................................	22	4	0.25	1	0	1	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................CGCTCCAGTGG------------------------TGG------------------------------------CCAAGACTTACTC..................................................................................................................................................................................................................................................	27	4	0.25	1	0	0	0	1	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................ACTTACTCC------------------------GCTCCTGCT-------GT.......................................................................................................................................................................................................	20	4	0.25	1	0	0	0	1	0	0	0
................................................................................................................................................................................................................................GAC---TTACTC-----------------------------------------------------CGCTCCTGCTGT.....................................................................................................................................................................................................................................................................................................................................................	21	4	0.25	1	0	1	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................ACTTACTCC------------------------GCTCCTGCT-------GTGT.....................................................................................................................................................................................................	22	4	0.25	1	0	0	0	1	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................GACTTACTCC------------------------GCTCCTGCT-------GTGC.....................................................................................................................................................................................................	23	4	0.25	1	0	1	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................GACTTACTCC------------------------GCTCCTGCT-------GTGTCC...................................................................................................................................................................................................	25	4	0.25	1	0	1	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................CAAGACTTACTCC------------------------GCTCCTG..................................................................................................................................................................................................................	20	4	0.25	1	0	1	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCT----------------------------------------CCAGTGG---T--------------------------GG-CCAAGACTTACTC..........................................................................................	27	4	0.25	1	0	0	0	1	0	0	0
................................................................................................................................................................................................................................GAC---TTACTC-----------------------------------------------------CGCTCCTGCTGTGTCC.................................................................................................................................................................................................................................................................................................................................................	25	4	0.25	1	0	1	0	0	0	0	0
...............................................................................................................................................................................................................................AGAC---TTACTC-----------------------------------------------------CGCTCCTGCTGT.....................................................................................................................................................................................................................................................................................................................................................	22	4	0.25	1	0	0	0	1	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTACTCCGCTCCTGCTGT..............................................................................	19	4	0.25	1	0	1	0	0	0	0	0
................................................................................................................................................................................................................CTCCAGTGGTGGCCAAGAC---TTACC.......................................................................................................................................................................................................................................................................................................................................................................................................................	24	4	0.25	1	0	1	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................TTACTCC------------------------GCTCCTGCT-------GT.......................................................................................................................................................................................................	18	4	0.25	1	0	0	0	1	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACTTACTCCGCTCCTGCTGTGT............................................................................	22	4	0.25	1	0	0	0	1	0	0	0
..................................................................................................................................................................................................................................C---TTACTC-----------------------------------------------------CGCTCCTGCTGTGTC..................................................................................................................................................................................................................................................................................................................................................	22	4	0.25	1	0	1	0	0	0	0	0
......................................................................................................................................................................................................................................TTACTC-----------------------------------------------------CGCTCCTGCTGT.....................................................................................................................................................................................................................................................................................................................................................	18	4	0.25	1	0	0	0	1	0	0	0
................................................................................................................................................................................................................................GAC---TTACTC-----------------------------------------------------CGCTCCTGCTGTGT...................................................................................................................................................................................................................................................................................................................................................	23	4	0.25	1	0	0	0	1	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTACTCCGCTCCTGCTGTGC............................................................................	23	4	0.25	1	0	1	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTTACTCCGCTCCTGCTGTGTCC..........................................................................	23	4	0.25	1	0	1	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGACTTACTCCGCTCCTG..................................................................................	20	4	0.25	1	0	1	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TTACTCCGCTCCTGCTGT..............................................................................	18	4	0.25	1	0	0	0	1	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................CTTACTCC------------------------GCTCCTGCT-------GT.......................................................................................................................................................................................................	19	4	0.25	1	0	1	0	0	0	0	0
................................................................................................................................................................................................................................GAC---TTACTC-----------------------------------------------------CGCTCCTGCTGTGC...................................................................................................................................................................................................................................................................................................................................................	23	4	0.25	1	0	1	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTACTCCGCTCCTGCTGTGT............................................................................	23	4	0.25	1	0	0	0	1	0	0	0
.............................................................................................................................................................................................................................CAAGAC---TTACTC-----------------------------------------------------CGCTCCTG.........................................................................................................................................................................................................................................................................................................................................................	20	4	0.25	1	0	1	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................CTCCAGTGG------------------------TGG------------------------------------CCAAGACTTACC...................................................................................................................................................................................................................................................	24	4	0.25	1	0	1	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................AGACTTACTCC------------------------GCTCCTGCT-------GT.......................................................................................................................................................................................................	22	4	0.25	1	0	0	0	1	0	0	0
..................................................................................................................................................................................................................................C---TTACTC-----------------------------------------------------CGCTCCTGCTGT.....................................................................................................................................................................................................................................................................................................................................................	19	4	0.25	1	0	1	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................CTTACTCC------------------------GCTCCTGCT-------GTGTCC...................................................................................................................................................................................................	23	4	0.25	1	0	1	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................GACTTACTCC------------------------GCTCCTGCT-------GT.......................................................................................................................................................................................................	21	4	0.25	1	0	1	0	0	0	0	0
.................................................................................................................................................................................................................................AC---TTACTC-----------------------------------------------------CGCTCCTGCTGTGT...................................................................................................................................................................................................................................................................................................................................................	22	4	0.25	1	0	0	0	1	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................CTTACTCC------------------------GCTCCTGCT-------GTGTC....................................................................................................................................................................................................	22	4	0.25	1	0	1	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................GACTTACTCC------------------------GCTCCTGCT-------GTGT.....................................................................................................................................................................................................	23	4	0.25	1	0	0	0	1	0	0	0
..........................................................................................................................................................................................................................................................................................................TGTGTCCACCTACACCGCTCCAGT................................................................................................................................................................................................................................................................................................................................	24	5	0.20	1	0	0	0	1	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................AGACTTACTCC------------------------GCTCCTGC.................................................................................................................................................................................................................	19	5	0.20	1	0	1	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTCCACCTACACCGCT----------------------------------------CCAGTGG---T--------------------------..........................................................................................................	25	5	0.20	1	0	1	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................GACTTACTCC------------------------GCTCCTGCT-------.........................................................................................................................................................................................................	19	5	0.20	1	0	1	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTACTCCGCTCCTGCTGC..............................................................................	21	5	0.20	1	0	1	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCACCTACACCGCT----------------------------------------CCAGTGG---T--------------------------..........................................................................................................	24	5	0.20	1	0	1	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................GCTCCAGTGG------------------------TGG------------------------------------CCAAGAC........................................................................................................................................................................................................................................................	20	5	0.20	1	0	1	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................CCACCTACACCGCTCCAGTGG------------------------TGG------------------------------------CC.............................................................................................................................................................................................................................................................	26	5	0.20	1	0	1	0	0	0	0	0
.............................................................................................................................GTG----TCCACCTACA---------------------------------------------------------------CCGCTCCAGTGGC........................................................................................................................................................................................................................................................................................................................................................................................................................................	26	5	0.20	1	0	1	0	0	0	0	0
...............................................................................................................................................................................................................................AGAC---TTACTC-----------------------------------------------------CGCTCCTGCC.......................................................................................................................................................................................................................................................................................................................................................	20	5	0.20	1	0	1	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCCACCTACACCGCT----------------------------------------CCAGT..........................................................................................................................................	21	5	0.20	1	0	0	0	1	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGACTTACTCCGCTCCTGC.................................................................................	19	5	0.20	1	0	1	0	0	0	0	0
...............................................................................................................................G----TCCACCTACA---------------------------------------------------------------CCGCTCCAGTGGT........................................................................................................................................................................................................................................................................................................................................................................................................................................	24	5	0.20	1	0	1	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................GTGTCCACCTACACCGCTCCAGTGG------------------------C.....................................................................................................................................................................................................................................................................................................	26	5	0.20	1	0	1	0	0	0	0	0
.....................................................................................................................................CCACCTACA---------------------------------------------------------------CCGCTCCAGTGGTGGCC....................................................................................................................................................................................................................................................................................................................................................................................................................................	26	5	0.20	1	0	1	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................GACTTACTCC------------------------GCTCCTGCT-------GC.......................................................................................................................................................................................................	21	5	0.20	1	0	1	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................GTCCACCTACACCGCTCCAGTGG------------------------T.....................................................................................................................................................................................................................................................................................................	24	5	0.20	1	0	1	0	0	0	0	0
............................................................................................................................TGTG----TCCACCTACA---------------------------------------------------------------CCGCTCCAGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................	24	5	0.20	1	0	0	0	1	0	0	0
................................................................................................................................................................................................................................GAC---TTACTC-----------------------------------------------------CGCTCCTGCT.......................................................................................................................................................................................................................................................................................................................................................	19	5	0.20	1	0	1	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTCCACCTACACCGCT----------------------------------------CCAGTGG---C--------------------------..........................................................................................................	26	5	0.20	1	0	1	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCT----------------------------------------CCAGTGG---T--------------------------GG-CCAAGAC................................................................................................	20	5	0.20	1	0	1	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................CCACCTACACCGCT----------------------------------------CCAGTGG---T--------------------------GG-CC.....................................................................................................	26	5	0.20	1	0	1	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................AGACTTACTCC------------------------GCTCCTGCC-------.........................................................................................................................................................................................................	20	5	0.20	1	0	1	0	0	0	0	0
...............................................................................................................................................................................................................................AGAC---TTACTC-----------------------------------------------------CGCTCCTGC........................................................................................................................................................................................................................................................................................................................................................	19	5	0.20	1	0	1	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................T-------GTGTCCACCTACACCGCT----------------------------------------CCAGT..........................................................................................................................................	24	5	0.20	1	0	0	0	1	0	0	0
................................................................................................................................................................................................................................GAC---TTACTC-----------------------------------------------------CGCTCCTGCTGC.....................................................................................................................................................................................................................................................................................................................................................	21	5	0.20	1	0	1	0	0	0	0	0
..............................................................................................................................TG----TCCACCTACA---------------------------------------------------------------CCGCTCCAGTGGT........................................................................................................................................................................................................................................................................................................................................................................................................................................	25	5	0.20	1	0	1	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................AGACTTACTCCGCTCCTGCC................................................................................	20	5	0.20	1	0	1	0	0	0	0	0
...............................................................................................................................G----TCCACCTACA---------------------------------------------------------------CCGCTCCAGT...........................................................................................................................................................................................................................................................................................................................................................................................................................................	21	5	0.20	1	0	0	0	1	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTTACTCCGCTCCTGCT................................................................................	19	5	0.20	1	0	1	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................GTCCACCTACACCGCTCCAGT................................................................................................................................................................................................................................................................................................................................	21	5	0.20	1	0	0	0	1	0	0	0
...............................................................................................................................................................................................................GCTCCAGTGGTGGCCAAGAC---............................................................................................................................................................................................................................................................................................................................................................................................................................	20	5	0.20	1	0	1	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................TGTCCACCTACACCGCTCCAGTGG------------------------T.....................................................................................................................................................................................................................................................................................................	25	5	0.20	1	0	1	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................GCTCCTGCTGTGTCCACCTACACCGCTCC...................................................................................................................................................................................................................................................................................................................................	29	6	0.17	1	0	1	0	0	0	0	0
.......................................................................................................................................................................................................................................TACTC-----------------------------------------------------CGCTCCTGCTGTGTC..................................................................................................................................................................................................................................................................................................................................................	20	6	0.17	1	0	1	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCT-------GTGTCCACCTACACC..........................................................................................................................................................................................	20	6	0.17	1	0	1	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................GCTCCTGCTGTGTCCACCTACACC........................................................................................................................................................................................................................................................................................................................................	24	6	0.17	1	0	1	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................CTGCTGTGTCCACCTACACC........................................................................................................................................................................................................................................................................................................................................	20	6	0.17	1	0	1	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................TACTCC------------------------GCTCCTGCT-------GTGTC....................................................................................................................................................................................................	20	6	0.17	1	0	1	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................CTGCTGTGTCCACCTACACCGC......................................................................................................................................................................................................................................................................................................................................	22	6	0.17	1	0	0	0	1	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................TACTCCGCTCCTGCTGTGTC...........................................................................	20	6	0.17	1	0	1	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................CTCCTGCT-------GTGTCCACCTACACC..........................................................................................................................................................................................	23	6	0.17	1	0	1	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCCTGCT-------GTGTCCACCTACACC..........................................................................................................................................................................................	24	6	0.17	1	0	1	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTGCT-------GTGTCCACCTACACC..........................................................................................................................................................................................	22	6	0.17	1	0	0	0	1	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCT-------GTGTCCACCTACACCGC........................................................................................................................................................................................	22	6	0.17	1	0	0	0	1	0	0	0
....................................................................................................................................................................................................................................................................................................TCCTGCTGTGTCCACCTACACC........................................................................................................................................................................................................................................................................................................................................	22	6	0.17	1	0	0	0	1	0	0	0
...................................................................................................................................................................................................................................................................................................CTCCTGCTGTGTCCACCTACACC........................................................................................................................................................................................................................................................................................................................................	23	6	0.17	1	0	1	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCCTGCT-------GTGTCCACCTACACCGCT----------------------------------------CC.............................................................................................................................................	29	6	0.17	1	0	1	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCCTGCTGTGTCCACCTA.....................................................................	19	7	0.14	1	0	1	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................CTCCTGCT-------GTGTCCACCTA..............................................................................................................................................................................................	19	7	0.14	1	0	1	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................CTCCTGCTGTGTCCACCTA............................................................................................................................................................................................................................................................................................................................................	19	7	0.14	1	0	1	0	0	0	0	0
............................................................................................................................TGTG----TCCACCTACA---------------------------------------------------------------CCGCTC...............................................................................................................................................................................................................................................................................................................................................................................................................................................	20	9	0.11	1	0	1	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................TGTGTCCACCTACACCGCTC....................................................................................................................................................................................................................................................................................................................................	20	9	0.11	1	0	1	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................T-------GTGTCCACCTACACCGCT----------------------------------------C..............................................................................................................................................	20	9	0.11	1	0	1	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................GTGTCCACCTACACCGCTCC...................................................................................................................................................................................................................................................................................................................................	20	10	0.10	1	0	1	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTCCACCTACACCGCT----------------------------------------C..............................................................................................................................................	19	10	0.10	1	0	1	0	0	0	0	0
.............................................................................................................................GTG----TCCACCTACA---------------------------------------------------------------CCGCTCC..............................................................................................................................................................................................................................................................................................................................................................................................................................................	20	10	0.10	1	0	1	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................GTGTCCACCTACACCGCTC....................................................................................................................................................................................................................................................................................................................................	19	10	0.10	1	0	1	0	0	0	0	0
.............................................................................................................................GTG----TCCACCTACA---------------------------------------------------------------CCGCTC...............................................................................................................................................................................................................................................................................................................................................................................................................................................	19	10	0.10	1	0	1	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGTCCACCTACACCGCT----------------------------------------CC.............................................................................................................................................	20	10	0.10	1	0	1	0	0	0	0	0

droYak3

C-AAAACCTACACCGCTCC---------------------------------------------CGTTGT------------------------GGCCAAGAC------CTACGTTGCTCCTGCTGTG----TCCACCTACA---------------------------------------------------------------CCGCTCCCGCTGTGGCCAAGAC---CTACGT-----------------------------------------------------TGCTCCTGCTGTGTCCACCTACACCGCTCCCGCTG------------------------TGG------------------------------------CCAAGACCTACGCC------------------------GCTCCTGCT-------GTGTCCACCTACACCGCT----------------------------------------CCCGTTG---T--------------------------GG-CCAAGACCTACGTTGCTC---------------------------------------CTGCTGTG---------------------------------TCC--	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
........................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCT----------------------------------------CCCGTTG---T--------------------------GG-CCAAGACCTACGTT.........................................................................................	27	3	0.33	1	0	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................................CACCGCT----------------------------------------CCCGTTG---T--------------------------GG-CCAAGACC...............................................................................................	25	3	0.33	1	0	0	0	1	0	0	0	0	0	0	0
..............GCTCC---------------------------------------------CGTTGT------------------------GGCCAAGAC------CTACGTT..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	27	3	0.33	1	0	0	1	0	0	0	0	0	0	0	0
..........CACCGCTCC---------------------------------------------CGTTGT------------------------GGCCAAGAC------C....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	25	3	0.33	1	0	0	0	1	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................GG------------------------------------CCAAGACCTACGCC------------------------GCTCCTGCT-------.........................................................................................................................................................................................................	25	4	0.25	1	0	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................ACA---------------------------------------------------------------CCGCTCCCGCTGTGGCCAAGAC---C...........................................................................................................................................................................................................................................................................................................................................................................................................................	26	6	0.17	1	0	1	0	0	0	0	0	0	0	0	0
.........................................................................................................................................CTACA---------------------------------------------------------------CCGCTCCCGCTGTGGCCAAGAC---............................................................................................................................................................................................................................................................................................................................................................................................................................	27	6	0.17	1	0	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................CTACACCGCTCCCGCTG------------------------TGG------------------------------------CCAAGAC........................................................................................................................................................................................................................................................	27	6	0.17	1	0	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................ACACCGCTCCCGCTG------------------------TGG------------------------------------CCAAGACC.......................................................................................................................................................................................................................................................	26	6	0.17	1	0	1	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................CAAGAC---CTACGT-----------------------------------------------------TGCTCCTGCTGT.....................................................................................................................................................................................................................................................................................................................................................	24	7	0.14	1	0	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................CGT-----------------------------------------------------TGCTCCTGCTGTGTCCACC..............................................................................................................................................................................................................................................................................................................................................	22	7	0.14	1	0	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................CAAGAC---CTACGT-----------------------------------------------------TGCTCCTGCC.......................................................................................................................................................................................................................................................................................................................................................	22	7	0.14	1	0	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGACCTACGTTGCTC---------------------------------------CTGCTGT.......................................	24	7	0.14	1	0	0	1	0	0	0	0	0	0	0	0
.................................................................................................CAAGAC------CTACGTTGCTCCTGCC.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	7	0.14	1	0	0	1	0	0	0	0	0	0	0	0
................................................................................................................CGTTGCTCCTGCTGTG----TCCACC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	22	7	0.14	1	0	0	1	0	0	0	0	0	0	0	0
.................................................................................................CAAGAC------CTACGTTGCTCCTGCTGT...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	24	7	0.14	1	0	0	1	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGACCTACGTTGCTC---------------------------------------CTGCC.........................................	22	7	0.14	1	0	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................G----TCCACCTACA---------------------------------------------------------------CCGCTCCCGC...........................................................................................................................................................................................................................................................................................................................................................................................................................................	21	9	0.11	1	0	0	1	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................GTCCACCTACACCGCTCCCGC................................................................................................................................................................................................................................................................................................................................	21	9	0.11	1	0	0	1	0	0	0	0	0	0	0	0

droSec2

--AAGACCTACTCGGCTCC---------------------------------------------TGCTGT------------------------GTCCA---C------CTACTCTGCTCCTGCCGTG----TCCGGATACT---CT------------------------------------------------CAGACCTACACCGCTCCCGCTGTGGTCAAGAC---CTACTC-----------------------------------------------------CGCCCCAGCTGTCTCCAGCTACACCGCTCCCGCTG------------------------TGG------------------------------------TCAAGAC-TACTCC------------------------GC-CCAGCT-------GTGTCCACCTACACCGCC----------------------------------------CC-GTGG---TGACTAAGAACTACACGCTCCCGTTGTG-GTCAA-AC------------------------CTACACCGC---------------T-CTGCTGTG---------------------------------TCCAC	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
.............................................................................................................................................................................................................................CAAGAC---CTACTC-----------------------------------------------------CGCCCCAGCTGT.....................................................................................................................................................................................................................................................................................................................................................	24	1	1.00	1	0	0	1	0
.................................................................................................................................................................................................................................AC---CTACTC-----------------------------------------------------CGCCCCAGCTGTCT...................................................................................................................................................................................................................................................................................................................................................	22	2	0.50	1	0	0	1	0
........................................................................................................................................................................................................................................ACTC-----------------------------------------------------CGCCCCAGCTGTCTCC.................................................................................................................................................................................................................................................................................................................................................	20	2	0.50	1	0	0	1	0

droSim2

-----ACCTACACCGCCCC---------------------------------------------CGTGGT------------------------GACCAAGGC------CTACACTGCTCCTGTGGTG----ACCA------------------------------------------------------------AGACCTACACCGCCCCCGCCGTGGTTAAGAC---CTACTC-----------------------------------------------------CGCCCCAGCTGTGTCCACCTACACCGCTCCAGCTG------------------------TAT------------------------------------CC---ACCTACACC------------------------GCTCCCGCT-------GTGTCCACCTACACCGCC----------------------------------------CCAGTGG---T--------------------------GA-CCAAGACCTACTCCGCTCCGGCTGTGTCCAGCTACTCGGC---------------TCCCGCTGTGGTCAGCAGCTAC---------------------TCCGG	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCTACTCCGCTCCGGCTGT..............................................................................	19	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................ACCTACTCCGCTCCGGCTGT..............................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................GTTAAGAC---CTACTC-----------------------------------------------------CGCCCCAGC........................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCTACTCCGCTCCGGCTGT..............................................................................	21	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0

dm3

CTCAGACCTACACCGCTCC---------------------------------------------CGCTGT------------------------GGTCAAGAC------CTACTCCGCCCCAGCTGTG----TCCACCTACA---------------------------------------------------------------CCGCCCCAGTGGTGACCAAGAC---CTACAC-----------------------------------------------------CGCTCCC------------------------GTTG------------------------TGG------------------------------------CCAAGACCTACACT------------------------GCTCCCGCC-------GTGTCCACCTACACCGCTCCCGTTGTGGCCAAGACCTATAC----CGCTCCCGCCGTG---------------------------------------GTCAAGACCTACTCTGCCCCAGCTGTGTCCACCTACTCTGC---------------TCCTGCTGTG---------------------------------TCC--	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
...............................................................................................................................G----TCCACCTACA---------------------------------------------------------------CCGCCCCAGTGGT........................................................................................................................................................................................................................................................................................................................................................................................................................................	24	1	2.00	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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.............................................................................................................................GTG----TCCACCTACA---------------------------------------------------------------CCGCCCC..............................................................................................................................................................................................................................................................................................................................................................................................................................................	20	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................GGTGACCAAGAC---CTACAC-----------------------------------------------------CGC..............................................................................................................................................................................................................................................................................................................................................................	21	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCCCCAGCTGTGTCCACCT......................................................................	19	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................GTGGTGACCAAGAC---CTACAC-----------------------------------------------------CGC..............................................................................................................................................................................................................................................................................................................................................................	23	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CCCGCCGTG---------------------------------------GTCAAGACC...............................................................................................	18	3	0.33	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............GCTCC---------------------------------------------CGCTGT------------------------GGTCAAGAC------.....................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	4	0.25	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................GCTGTG----TCCACCTACA---------------------------------------------------------------CC...................................................................................................................................................................................................................................................................................................................................................................................................................................................	18	5	0.20	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...AGACCTACACCGCTCC---------------------------------------------CGCC..............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	5	0.20	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droEug1

TTAAGGCTTACACCGCCCC---------------------------------------------CGTGGT------------------------GGCCAAGAC------CTATGTTGCTCCTGCTGTG----TCTACCTACACCGC---TC------------------------------------------------------CCG---CCGTTGTGGCCAAGAC---CTACAC-----------------------------------------------------CGCTCCCGTGGTTAAGGCTTACACCGCCCCCGTGG------------------------TGG------------------------------------CCAAGACCTATGTTGCTCCAGCTGTCTCCACCTACACCGCTCCAGTG-------GTTAAGACTTACACCGCT----------------------------------------CCCGTGG---T--------------------------TG-CTAAGAC------------------------CTACACCGC---------------TCCCGCTGTG---------------------------------GTGA-	Size	Hit Count	Total Norm	Total
No Reads

droBia1

CCAAGACCTACACCGCTCC---------------------------------------------CGCCGT------------------------GGTGAAGAC------CTACTCCGCCCCGGCTGCG----TCCACCTACA---------------------------------------------------------------CCGCTCCCGTGGTGGCCAAGAC---CTACAC-----------------------------------------------------CGCCCCAGTGGTGACCA------------------------------------------------------------------------------------AGTCCTACACC------------------------GCTCCCGTGGTGACCA----AGACCTACACCGCTCCCGTGGTGACCAAGACCTACAC----CGCTCCCGCCGTG---------------------------------------GTGAAGACCTACTCTGCCC---------------------------------------CGGCTGTG---------------------------------TCCAG	Size	Hit Count	Total Norm	Total
No Reads

droTak1

TCTAG--CTACTCCGCCCC---------------------------------------------CGCTGT------------------------TGTGAAGAC------CTACTCCGCCCCAGCTGTG----TCCACCTACA---------------------------------------------------------------CTGCTCCTGTGGTGACCAAGGC---TTACAC-----------------------------------------------------CGCTCCTGTGGTGACCA------------------------------------------------------------------------------------AGGCTTACACC------------------------GCTCCTGTGGTGACCA----AGACCTACACCGCCCCCGTGGTGGCTAAGACCTACACTGCT-------------CCCGCTG---T--------------------------G-GTGAAGACCTACACCGCCCCGGCTGTGTCCACCTACACCGC---------------CCCGGCTGTG---------------------------------TCCT-	Size	Hit Count	Total Norm	Total
No Reads

droEle1

CCCAGTCCTACACCGCTCC---------------------------------------------CGCTGT------------------------GGTTAAGAC------CTACTCCGCCCCTGCTGTG----TCCACCTACT---------------------------------------------------------------CCT------------CCAAGAC---CTACTC-----------------------------------------------------CGCCCCAGCTGTGTCCACCTACACCGCTCCCGTGG------------------------TGA------------------------------------CCA-------------------------------------------------------AGGCTTACTCCGCTCCCGTGGTCACTAAGACCTACAC----TGCTCCCGCCGTG---------------------------------------GTGAAGACCTACTCCGCCCCAGCAGTGTCCACCTACTCCGC---------------CCCAGCTGTG---------------------------------TCC--	Size	Hit Count	Total Norm	Total
No Reads

droRho1

CTAAGACCTACACTGCCCCCGT------------------GGTGACTAAGACCTACACC------------------------GCTCCCGCCGTGGTGAAGAC------CTACTCCGCCCCAGCTGTG----TCCACCTACT---------------------------------------------------------------CCGCCCCAGCAGTGTCC-----------------------------------------------------------------------------------A------------------------CCTACTCCGCCCCAGCTGTGT------------------------------------CC---ACCTACTCC------------------------GCCCCAGCT-------GTGTCCACCTACACCGCC----------------------------------------CCCGTGG---T--------------------------GG-CCAAGACCTACT---------------CCAGCTACTCCGC---------------TCCCGCTGTGGTCAGCAGCTACTCCGGATCTTCGGGCACCGTGTACGG	Size	Hit Count	Total Norm	Total
No Reads

droFic1

CCAAGACCTACACCGCTCC---------------------------------------------GGCTGT------------------------GGTCAAGAG------CTACTCCGCTCCAGCTGTG----TCCTCCTACA---CC------------------------------------------------CAGGCCTACACCGCTCCCGCTGTGGTCAAGTC---CTACAC-----------------------------------------------------CGCTCCCGCTGTGTCCAGCTACTCCGCCCCGGCTGTGTCCTCCTACACC------------G------------------------------------CCAAGACCTACACC------------------------GCTCCCGCT-------GTCTCCTCCTACACCGCT----------------------------------------CCCGCTG---T--------------------------T-GTGAAGACCTACTCCGCCCCAGCCGTGTCCACCTACTCCGC---------------ACCAGCTGTG---------------------------------TCCAG	Size	Hit Count	Total Norm	Total
No Reads

droKik1

CCAAGACCTACTCGGCGCC---------------------------------------------CGCTGT------------------------GGTCAAGAG------CTACTCCGCCCCGGCTGTG----TCCAGCTACT---------------------------------------------------------------CGGCTCCCGCTGTTGTGAAGAC---TTACAC-----------------------------------------------------CGCTCCCGCTGTCTCCCACTACACTGCTCCGGCTG------------------------TGA------------------------------------CCAAGACCTACTCG------------------------GCTCCAGCT-------GTGTC---CTACTCTGCC----------------------------------------CCGGCTG---T--------------------------GG-TTAAGACCTACTCTGCCCCAGCTGTGTCCAGCTACTCCGC---------------TCCTGCCGTG---------------------------------TCCCA	Size	Hit Count	Total Norm	Total
No Reads

droAna3

CTAAGACCTACACTGCTCC---------------------------------------------TGCTGTCTCCACCTACTCGGCTCCTGCTGTGGTCAAGAC------CTACACTGCCCCAGTTGTG----GCCA---------------------------------------------------------------------------------------AGAC---CTACAC-----------------------------------------------------TGCCCCAGTTGTGACCAA---GA------------------CCTACACTGCCCCAGTTGTGG------------------------------------CCAAGACCTACACT------------------------GCTCCTGCTGTGGTCA----AGACCTACACCGCTCCTGTGGTGGCCAAGACCTACAC----CGCTCCCGCCGTG---------------------------------------GTCAAGAC------------------------CTACTCCGC---------------CCCCGCCGTC---------------------------------TCC--	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................CA----AGACCTACACCGCTCCTGTGGT...............................................................................................................................................................................	24	1	2.00	2	0	2	0	0	0	0
...............................................................................................................................G----GCCA---------------------------------------------------------------------------------------AGAC---CTACAC-----------------------------------------------------TGCCCC...........................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0
...............................................................................................GTCAAGAC------CTACACTGCCCC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................GACCTACACCGCTCCTGTGGC...............................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0
...............................................................................................GTCAAGAC------CTACACTGCCCCAGTTGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GGCCAAGACCTACAC----CGCTCCC.....................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................CAAGAC------------------------CTACTCCGC---------------CCCCGCCGTC---------------------------------C....	26	1	1.00	1	0	1	0	0	0	0
...............................................................................................................................................................................................................................AGAC---CTACAC-----------------------------------------------------TGCCCCAGTTGTGACC.................................................................................................................................................................................................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................GTGGTCA----AGACCTACACCGCTCCTGTG.................................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCA----AGACCTACACCGCTCCTGTGGT...............................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................................................................................................................GGTCA----AGACCTACACCGCTCCTGTGGC...............................................................................................................................................................................	27	1	1.00	1	0	1	0	0	0	0
.............................................................................................................................................................................................................................................................................................................GACCAA---GA------------------CCTACACTGCCCC...........................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................AGTTGTGG------------------------------------CCAAGACCTACACT------------------------GCTCCT...................................................................................................................................................................................................................	28	1	1.00	1	0	1	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................GCTCCCGCCGTG---------------------------------------GTCAAGAC------------------------CTACTCC.................................................................	27	1	1.00	1	0	1	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................CTGCTGTGGTCA----AGACCTACACC..........................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................................AGACCTACACCGCTCCTGTGGT...............................................................................................................................................................................	22	1	1.00	1	0	1	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................GTCA----AGACCTACACCGCTCCTGTGGC...............................................................................................................................................................................	26	1	1.00	1	0	1	0	0	0	0
.........................................................................................................................................................................................................................................................................................................TTGTGACCAA---GA------------------CCTACACTGCCCC...........................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................GG------------------------------------CCAAGACCTACACT------------------------GCTCCTGC.................................................................................................................................................................................................................	24	1	1.00	1	0	1	0	0	0	0
.......CTACACTGCTCC---------------------------------------------TGCTGTCTC.........................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	0	1	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................GG------------------------------------CCAAGACCTACACT------------------------GCTC.....................................................................................................................................................................................................................	20	1	1.00	1	0	1	0	0	0	0
....GACCTACACTGCTCC---------------------------------------------TGCTGC............................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	2	0.50	1	0	1	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................GACCTACACT------------------------GCTCCTGCTGC..............................................................................................................................................................................................................	21	2	0.50	1	0	1	0	0	0	0
................................................................................................................CACTGCCCCAGTTGTG----GCCA---------------------------------------------------------------------------------------AGAC---............................................................................................................................................................................................................................................................................................................................................................................................................................	24	2	0.50	1	0	1	0	0	0	0
.........................................................................CACCTACTCGGCTCCTGCT......................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	19	2	0.50	1	0	1	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................CACTGCCCCAGTTGTGG------------------------------------CCAAGAC........................................................................................................................................................................................................................................................	24	2	0.50	1	0	1	0	0	0	0
......................................................................................................................................................................................................................................................................................................................GA------------------CCTACACTGCCCCAGTTGC.....................................................................................................................................................................................................................................................................................................	21	3	0.33	1	0	1	0	0	0	0
....................................................................................................GAC------CTACACTGCCCCAGTTGC...................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	3	0.33	1	0	1	0	0	0	0
................................................................................................................................................................................................................................GAC---CTACAC-----------------------------------------------------TGCCCCAGTTGC.....................................................................................................................................................................................................................................................................................................................................................	21	3	0.33	1	0	1	0	0	0	0

droBip1

CCAAGACCTACACCGCTCC---------------------------------------------TGCCGT------------------------GGTCAAGAC------CTACACCGCCCCTGTGGTG----GCCA------------------------------------------------------------AGACCTACACCGCTCCTGCCGTGGTCAAGAC---CTACAC-----------------------------------------------------CGCCCCTGTGGTGACCAAG---------------------GCCTACACCGCTCCCGCCGTAG------------------------------------TCAAGACCTACTCT------------------------GCCCCCGCC-------GTCTCCACCTACACCGCT----------------------------------------CCCGCTGTGGT--------------------------GG-CTAAGACCTACTCCGCCCCGGCCGTGTCCACCTACTCCGC---------------CCCGGCTGTG---------------------------------TCCAC	Size	Hit Count	Total Norm	Total
No Reads

dp5

--AAGAGCTATTCCGCCCC---------------------------------------------AGCCGT------------------------GACT-------------------------------------TCTTACA---CG------------------------------------------------A---------------------------AGAC---CTACTCAGCCCCAGCCGTGACCTCCTACACTGCTCCCGCTGTTGTGAAGACCTACTCCG--CGCCAGCCGTGACTTCCTACACTGCTCCCGCTG------------------------TTG------------------------------------TTAAGACCTACTCA------------------------GCCCCAGCC-------GTGTCCTCCTACACCGCT----------------------------------------CCAGCTG---T--------------------------GT-CC---ACCTACTCGGCACCTGCCGTATCTACCTACTCGGC---------------GCCTGCCGTA---------------------------------TCC--

Size

Hit Count

Total Norm

Total

M022
Male-body

M040
Female-body

M059
Embryo

M062
Head

V043
Embryo

V051
Head

V112
Male-body

SRR902010
Ovary

SRR902011
Testis

SRR902012
CNS imaginal disc

No Reads

droPer2

--AAGAGCTATTCCGCCCC---------------------------------------------AGCCGT------------------------GACT-------------------------------------TCTTACA---CG------------------------------------------------A---------------------------AGAC---CTACTCAGCCCCAGCCGTGACCTCCTACACTGCTCCCGCTGTCGTGAAGACCTACTCCG--CGCCATCCGTGACTTCCTACACTGCTCCCGCTG------------------------TTG------------------------------------TAAAGACCTACTCA------------------------GCCCCAGCC-------GTGTCCTCCTACACCGCT----------------------------------------CCAGCTG---T--------------------------GT-CC---ACCTACTCGGCACCTGCCGTATCCACCTACTCGGC---------------GCCTGCCGTA---------------------------------TCC--	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
.......................................................................................................................................................................................................................................................................................................ATCCGTGACTTCCTACACTGCTCCC..................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0	0	0
.................................................................................................................................................CG------------------------------------------------A---------------------------AGAC---CTACTCAGCCCCAGCC............................................................................................................................................................................................................................................................................................................................................................................................................	23	3	0.33	1	1	0	0	0	0	0

droWil2

CCAAGACATATGCCGCTCC---------------------------------------------AGCTGT------------------------CCA------------CTATGCTGCTCCCGCTCCAGCTGTCCAC-TATGCTGC---TC------------------------------------------------------CCGCTCCAGTTGTGGCCAAGACTGTCTATGC-----------------------------------------------------TGCTCCT------------------GCCCCAGTTG------------------------TGGCCAAGACTTACTACTCTGCTCCCGCTCCAGTTGTGGCCAAGACA----------------------------------------------GTG-------------------------------------------------------------------------------------------------------TACTCTGCCC------------------CCGCTCCAGTTGTTGCTGCCCCA------------------------------------------GT	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
.............................................................................................................................................GCTGC---TC------------------------------------------------------CCGCTCCAGTTGT........................................................................................................................................................................................................................................................................................................................................................................................................................................	20	3	0.33	1	0	0	0	1	0

droVir3

CTTATCCCGCAGCAGCTCC---------------------------------------------AGCAAT------------------------TGCTAAGGTGGCCACCTATGCAGCACCAGCTGTG----GCCACTTATTCCGCTGCGCCCGCCACAAGCTATTCCAGCTCTGGACATGGCGCCATTTCTCATCAGTA---------------------------------------------------------------------------------CGTCTCCA--AGCCGGCTGTA---------------------------------------------------------------------------------------------------------------------------------------AGTA----CAATCTCCGCTGCTCCAGCGATTGCCAAG-------------------------------G---T--------------------------GG-C---CAGCTATGCAGCACCCGCCATATCCTCCTACTCTGC------------TGCTCCAGCTATC---------------------------------ACTCA	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
.....................................................................................................................................................................TCCAGCTCTGGACATGGCGCC........................................................................................................................................................................................................................................................................................................................................................................................................................................................................	21	1	1.00	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................................CTCCGCTGCTCCAGCC.................................................................................................................................................................................	16	4	0.50	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2

droMoj3

CCCA---CTATGCTGCCCC---------------------------------------------TCCTGT------------------------GGTCAAGAC------T---GTTGCTCCCGCTTAC----TCCGCCTATG---------------------------------------------------------------CTGCTCCTGCTGTCATCAAGAC---T---GT-----------------------------------------------------TGCTCCCGCTTACTCCACCTATGCTGCTCCGGCTG------------------------TGG------------------------------------TCAAGACT---GTG------------------------GGTCCTGCT-------TACTCCACCTATGCTGCT----------------------------------------CCAGCTA---------------------------------C---CCACTATGCTGCTCCAGCTG--TCCA-CTATGCTGC---------------TCCAGCTGT-----------------------------------CCA-	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
No Reads

droGri2

A---GAGCTATGCTGCCCCCAGCAACGAGTACCTGCCACCCGTGCAGCAGACATACAGTGCGCCGGTCGT------------------------GCAGCAGAC------CTATTCCG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTCCAGCTGTCT---CCTACGCCGCACCCTCGG------------------------TTG------------------------------------G------CTACTCG-----------------------------TCTG-------GTGGTGGCTCATACTCGT----------------------------------------CCGGTGG---T--------------------------GG-CTCATAC----TCGTCA--GGCGGTGGC---TCATACTCG---------------TCCGGCGGTG---------------------------------GA-GG	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
......................................................................................................................................................................................................................................................................................................CAGCTGTCT---CCTACGCCG.......................................................................................................................................................................................................................................................................................................................................	18	1	1.00	1	1	0

-14.0	-13.9	-13.7	-13.3

der_433

scaffold_4690:12851432-12851566 -

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads