der_373

CDS [Dere\GG18909-cds]; CDS [Dere\GG18909-cds]; exon [dere_GLEANR_3703:2]; exon [dere_GLEANR_3703:1]; intron [Dere\GG18909-in]

Name	Class	Family	Strand
TART_DV	LINE	Jockey	+

##################################################------------------------------------------------------------------------------------------------------------------------------------------################################################## AGACCGCCCCGGCAGCAACAGCAGCAGCACCAACAACAACAAGCATTCGCGTCGCAGCAGCGCCGGCAGCAACAACAACAAATAGCAAAAACTTAGCAGCGTTCGGCAAAGCGCAGCAACAGCAACAACAAAGGCAACACTAAAACTAACAGCAGCAACAGCAACAGCAAGTGCAACTGCAACACCAGCAGCAGCAGCAGCAACAACCAAGCGGCGGCCAGTCAGCAGCAGCAACAAC ************************************************((.((((..((((..((.((..............)).........((.(((((......))))).))................((................)).((....))....))..))))..)))).)).....************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M055 female body	V040 embryo	M057 embryo	V108 head
..................................................................................................................................................................................................CAGCAGGAACAACCAAGCGGACGCC...................	25	3	1	1.00	1	0	1	0	0
.......................................................................................................................................................................................ACCAGCAGCAGAAGCAGCAACAATCA.............................	26	2	2	0.50	1	1	0	0	0
..............................CAACAACAACAAGCAGTCGC............................................................................................................................................................................................	20	1	2	0.50	1	1	0	0	0
..........................................................AGCGCCGGCAGCAATAAC..................................................................................................................................................................	18	1	2	0.50	1	0	0	1	0
........................................................................................................................AACAACAAAAAAGTCAACACTA................................................................................................	22	3	9	0.11	1	0	0	1	0
.....ACCCCGGCAACAAGAGCAGCA....................................................................................................................................................................................................................	21	3	20	0.05	1	0	1	0	0
.....................................................................................................................................................................................ACACCAGCAGCAGCAGCAGC.....................................	20	0	20	0.05	1	0	0	1	0
...................................................................................................................................................AACAGCAGCAACAGCAACA........................................................................	19	0	20	0.05	1	1	0	0	0
....................................................................................................................................................ACAGCAGCAACAGCAACAGC......................................................................	20	0	20	0.05	1	0	0	1	0
......................................................................................................................................................................................CACCAGCAGCAGCAGCAGCA....................................	20	0	20	0.05	1	0	0	0	1
....................................................................................................................................................................................AACACCAGCAGCAGCAGCA.......................................	19	0	20	0.05	1	1	0	0	0

TCTGGCGGGGCCGTCGTTGTCGTCGTCGTGGTTGTTGTTGTTCGTAAGCGCAGCGTCGTCGCGGCCGTCGTTGTTGTTGTTTATCGTTTTTGAATCGTCGCAAGCCGTTTCGCGTCGTTGTCGTTGTTGTTTCCGTTGTGATTTTGATTGTCGTCGTTGTCGTTGTCGTTCACGTTGACGTTGTGGTCGTCGTCGTCGTCGTTGTTGGTTCGCCGCCGGTCAGTCGTCGTCGTTGTTG ************************************************((.((((..((((..((.((..............)).........((.(((((......))))).))................((................)).((....))....))..))))..)))).)).....************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M055 female body	V040 embryo
..................................................................................................................................................................................................................CGCGGCCGGTCGGTCGTCGTC.......	21	2	1	1.00	1	1	0
.......................................................................................................................................................................................TGGTCGTCGTCGTCGTCGTTGTTT...............................	24	1	20	0.05	1	0	1

Species	Coordinate	ID	Alignment
droEre2	scaffold_4690:4615194-4615431 +	der_373	AGACCG-----CCCCGGCAG---CAACAGCAG--------CAG---CACCAACAAC---AACAAGCATTCGCGTCGCAGCAGCGC--------CG---GCAGCAACAACAACAAATAGCAAAAACTTAGCAGCGTTCGGCAAAGCGCA------------------------GCAACAGCAAC---------AACAAAGGCAA---CACTAAAACTAACA-----------GCAGCA---ACAGCAACAGCAAG---------------TGCAACT------GCAACA------CCAGCAG------------------------CA------------GCA---GCAGCAACAA---------------CCAAGCGGCGGCCA------------------------------GTCA---------------------GCAGCAGCAACAAC
droYak3	X:19081662-19081884 -		AGACCG-----CCCCGGCAG---CAACAGCAG--------CAG---CACCAACAAC---AACAAGCATTCGCGTCGCAGCAGCGC--------CG---GCAGCAACAATAACAAATAGCAAAAACTGAGCAGCGTTCGGCAAAGCGCA------------------------GCAACAG---C---------AACAAAGGCAA---CACTAAAACTAACA-----------GCAGCG---------ACACCAAT---------------TGCTACT------GCAACA------CCAGCAG------------------------CA---------------------GAAACAA---------------CCAAGCGGCGGCAA------------------------------GTCA---------------------GCAGCAGCAACAAC
droSec2	scaffold_15:1216953-1217196 -		AGACCG-----CCCCGGCAG---CAACAGCAG--------CAG---CACCAGCAAC---AACAAGCATTCGCGTCGCAGCAGCGC--------CG---GCAGCAACAACAACAAATAGCAAAAACTAAGCAGCGTTCGGCAAAGCGCA------------------------GCAACAG---C---------AACAAAGGCAA---CACTAAAACTAACA-----------GCAGCA---------ACACCAAT---------------TGCAACT------GCAGCA------CCAGCAG------------------------CAGCAGCAGCATCAACAACAACAACAACAG---------------CCAAGCGGCGGCAA------------------------------GTCA---------------------GCAGCAGCAACAAG
droSim2	x:9977505-9977748 -	dsi_5567	AGACCG-----CCCCGGCAG---CAACAGCAG--------CAG---CACCAGCAAC---AACAAGCATTCGCGTCGCAGCAGCGC--------CG---GCAGCAACAACAACAAATAGCAAAAACTAAGCAGCGTTCGGCAAAGCGCA------------------------GCAACAG---C---------AACAAAGGCAA---CACTAAAACTAACA-----------GCAGCA---------ACACCACT---------------TGCAACT------GCAGCA------CCAGCAG------------------------CAGCAGCAGCAGCATCGACAACAACAACAG---------------CCAAGCGGCGGCAA------------------------------GTCA---------------------GCAGCAGCAACAAG
dm3	chrX:10512584-10512815 -		AGACCG-----CCCCGGCAG---CAACAGCAG--------CAG---CACCAGCAAC---AACAAGCATTCGCGTCGCAGCAGCGC--------CG---GCAGCAACAACAACAAATAGCAAAAACTTAGCAGCGTTCGGCAAAGCGCA------------------------GCAAAAG---C---------AACAAAGGCAA---CACTAAAACTAACA-----------GCAGCA---------ACACCAAT---------------TGCAACT------GCAGCA------CCAGCAG------------------------CA------------TCAACAACAACAACAA---------------CCAAGCGGCGGCAA------------------------------GTTA---------------------GCAGCAGCAACAAC
droEug1	scf7180000409538:185103-185320 +		AGATCG-----CCCCGGCAG---CAA---------CA-----------------AC---AACAACCATTCGCGTCGCAGCAGCGCT--------------AGCAACAACAATAAATAGCAAAAACTGAGCAGCGTTCGGCAAAGCGCA------------------------GCAACAG---C---------AACAAAAGCAA---CACTAAAACTAACAGCAGCAGC--------A---------AAACCAAT---------------TGCAACT------GCAGCAGTAACAACA------------------------------------------ACAACAACAGCAACAT---------------CCAAACGGCGACAAGCGG---------------------------TCA---------------------ACAGCAGCAACA--
droBia1	scf7180000302126:3414354-3414585 -		AGACCG-----CCCCGCCAG---CAA---------CA-----------GCA---GC---AACAACCATTCGCGTCGCAGCAGCGCC--------------AGCAACAACAACAAATAGCAAAAACTGAGCAGCGTTCGGCAAAGCGCA------------------------GCAACAG---C---------AACAAAGGCAA---CACTGAAAATAACA-----------ACGGCA---GCAGCAGCAGCAGCAGCAACAACACAAATTGCAACT------GC---------------------------------------------------------AACGGCAGCAACAA---------------CCAAGCGGCGACAGGCGG---------------------------TAA------ACAGCA---------GCAGCAGCAGCGGC
droTak1	scf7180000415394:331959-332145 -		AGACCG-----CCCCGGCAG---CAA---------CA-----------------AC---AACAACCACTCGCGTCGCAGCAGCGCC--------------AGCAACAACAACAAATAGCAAAAACTGAGCAGCGTTCGGCAAAGCGCA------------------------GCAACAG---C---------AACAAAGGCAA---CACTGAAACTAACAGCAGCAGC--------A---------ACACCAAT---------------TGCAATT------GCAA------------------------------------------------------------CAGCAACAA---------------CCAAGCGGCGACAGGCGG---------------------------TA------------------------------------
droEle1	scf7180000491087:107172-107385 +		AGACCG-----CCCCGGCAG---CAA---------CA-----------A---CAAC---AACAACCATTCGCGTCGCAGCAGCGCC--------------AGCAACAACAACAAATAGCAAAAACTGAGCAGCGTTCGGCAAAGCGCA------------------------GCAACAG---C---------AACAAAGGCAA---CACTAAAAATAACA-----------CCAGCA---GCAGCAACAGCAGC---------------AGCAGCA------GCAA---------------------------------------------------CAGCAGCAGCAACAACAA---------------CCAAGCGGCGACAAGCGG---------------------------T------------------------CAACAGCAACAAC
droRho1	scf7180000780277:36863-37076 -		AGACCG-----CCCCGGCAG---CAA---------CA-----------------AC---AACAACCATTCGCGTCGCAGCAGCGCC--------------AGCAACAACAATAAATAGCAAAAACTGAGCAGCGTTCGGCAAAGCGCA------------------------GCAACAG---C---------AACAAAGGCAA---CACTTAAAATAACAGCAACAGA--------A---------ACGCCAAT---------------TGTCACAGCAACTGCAA------CAGCA------------------------------------------------GCAACAACAA---------------CCAAGAGGCGACAAGCGG---------------------------TCA---------------------ACAGTAGCAACAAC
droFic1	scf7180000454050:472757-472997 -		TGACCG-----CCCCGCCAG---CAA---------CA-----------------AC---AAAAAGCATTCGCGTCGCAGCAGCGCC--------------AGCAACAACAACAAATAGCAAAAACTGAGCAGCGTTCGGCAAAGCGCA------------------------GCAACAG---C---------CACAAAGGCAA---CACTGAAGATAACAGCAGCAGC--------G---------ATACCGAT---------------TGCAACT------GCAACAGCAACAGCAGCAG------------------------CA------G------CAACAACAGCAGCAGCGGTAGCAACAGCAAGCAAGCGGCGACAAGCGG---------------------------TCA---------------------TCAGCAGCAGCAGC
droKik1	scf7180000302698:592264-592480 +		AGCCCA-----CT-----AG---CGGCGGCAGCAACA-----------GCAGCAAC---AATAAGCATTCCCGTCGCAGCAGTGCC--------------AGCAACAATAACA-ATAGCAAAAACTGAGCAGCGTTCGGCAAAGCGCA------------------------GCAAC---------------AACCAAGGCAA---CACTAAAAACAACA-----------ATAACA---ACAGCAGCAGCA---------------------ACG------GCAA------TAGCAGCAG------------------------CA-------------CAACAACAACAACAA---------------CGTTGCAGTCGCA--------------------------------GTC---------------------GCAGCAGAAGTCGC
droAna3	scaffold_13117:3453137-3453358 +		CGGCAG-----CGG-AGTTG---CAA---------CTGCACCGCAGCAAC---AGTCGC------------AGTCGCAGCAGCAACAGCAA--CA---GCAGCAGC-------AACAGCAATCG-----CAGC---TAG--TAGGGCA------------------------GCAGCAG---C---------AGCAGCAGCAA---CAACAACAGTCACAACAACAGC--------A---------GCAACAAT---------------CGCAGCA------GCAACA------GCAACAG------------CAACAACAGCAGC------------AGCAGCAGCAACAACTA---------------TCGAGCGA---TTC------------------------------TGTT---------------------GCAGCAGCAGCAGC
droBip1	scf7180000395832:708293-708491 -		CGGTTG-----CAACAGCAG---CAG---------CA-----------GCAACAAC---AACAA---CGC---TTGCAACAACAG--------CA---GCAACAACAACAACA------------------ACGTCTA--------------------------CAACAGCAGCAGCAG---C---------AACAACAGCAA---CGCTTGCAACAGCA-----------GCAGCA---ACAACAGCAGCGCT---------------TGCAGCA------GCAACG------CTTGCAA------------------------CA------------GCAGCAACAACAACAG---------------CAACGCG--TGC--------------------------------AACA---------------------ACAGCAGCAACAAC
dp5	XR_group6:12702032-12702238 +		AA-CAG-----CAGCAGCAG---CAGAAGCAG--------CAGCAGCAAC---AGCAGCAACA------------GCAGCAGCAA------CA--GC------AGCA--------------------------------------GCAGCAACAGCAA------CAACA---GCAGCAG---CAACAGCAGCAGCAACAGCAG---CAGCA---------ACAGCA--GCAGCAAC---AGCAGCAGCAGCAT---------C------AGCAA------------------CATCAGCAGCAAAAGCATCAGCAACAGCAGCAGC-----------------------------------------------AGCAGCAGC--------------------------------ATAA---------------------GCAGCAGCAACAGC
droPer2	scaffold_4:6848902-6849111 -		AGGCGATCCAGCAGCATCAC---CAGCATCTC--------CAGCAGCAAC---ATCATCATCA------------GCAGCAGCAT------CA--GG------CGCA----------GCAGCAGG--CAC--------------------------AG------CAACA---GCAGCAG---CAACAGCAGGCTCAGCAGCAG---GCTCA---------GCAACA--GCAACAAC---AACAGCAGCAACAA---------C------AGCAA------------------CAACAACAGCAACAACAGCAGCAACAGCAGCAGC---------------A------GCAACA-------------------------------------------------------------ACA---------------------ACAGCAGCAACAGA
droWil2	scf2_1100000003523:1060-1275 +		AG-CAA-----CTGCAGCAG---CAACAACAA---CAA--CAG---CAGC---AACAACAACA------------GCAGCAGCAA--------CAACAGCAGCAACAACAACA-GCAGCAGCAAC--AACAGCAT-CA----------------------------------GCAACAG---CAACAGCAGCAACAATGGCAG---CAG---------CAACAACAGC--------A---------ACATCAAC---------------TGCAGCA------GCAACAGCGACAGCAGCAA------------------------------------CAATGGCAGCAACAACAA---------------C--AGCGACAACA--------------------------------ACT---------------------GCAGCAGCAACAAC
droVir3	scaffold_12970:7507666-7507888 +		AGGCGT-----CGTCAGCAG---CAG---------CA-----------GCA---GC---AGCAGCAATTCGCGACGCAGCAGCAG--------CA---GCAGCAACAACAACAAATAGCAAAAACTGAGCAGCGTTCGGCAAAGCGCA---------ATCCAGACA------ACAATAT---C---------AACAA---------------------CA-----------ACAACA---ACAACAA---------------------------------------------CAGCA------------------------------------------ACAGCAACAACAACAA---------------CTAAACGCTGCCAGGCCGTTCAGCAGCAGCGTGCAACGACGCCAATTA---------------------GCGGCGGCAGCAGC
droMoj3	scaffold_6500:16033436-16033675 -		AA-CAA-----CAGCAGCAGCAGCAGTAGCAG--------CAG---CAGCAGCAGC---AGCA-GCAGTAGCAGC-----AGCAGCAGCAG--CA---GCAGCAGCAACAACA-GCAGCAGCAGC--AACA--------------GCA------------------GCA---GCAGCAG---CAACAGC---AGCAGCAGCAGCAACAG---------CAGCAGCA-----GCAGCAACAGCAGTAGCAGCA---------------------GCA------GCAA------CAGCAGCAG---------------------------CAGCAACAGCGGCAGCAGCAGCAACAG---------------CAA-----CAGCA-GCAG---------------------CAGC-AGCA---------------------ACAGCAGCAACAGC
droGri2	scaffold_14828:10818-11054 -		AG-CAG-----CAGCAGCAG---CAGCAGCAG---CAG--CAG---CAGC---AGCAGCAGCA------------GCAGCAGCAG------CA--GCAGCAGCAGCAGCAGC--------------------------------------------AG------CAGCA---GCAGCAG---CAGCAGCAGCAGCAGCAGCAG---CAGCA---------GCAGCA--GCAGCAGC---AGCAGCAGCAGCAG---------C------AGCAG------------------CAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGC---------------------AGCAGCAG---------------C--AGCAGCAGCA--------------------------------GCAGTTAAAACAGCAGCAGCATCAGCAGCAGCAAAAAC

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droEre2

AGACCG-----CCCCGGCAG---CAACAGCAG--------CAG---CACCAACAAC---AACAAGCATTCGCGTCGCAGCAGCGC--------CG---GCAGCAACAACAACAAATAGCAAAAACTTAGCAGCGTTCGGCAAAGCGCA------------------------GCAACAGCAAC---------AACAAAGGCAA---CACTAAAACTAACA-----------GCAGCA---ACAGCAACAGCAAG---------------TGCAACT------GCAACA------CCAGCAG------------------------CA------------GCA---GCAGCAACAA---------------CCAAGCGGCGGCCA------------------------------GTCA---------------------GCAGCAGCAACAAC	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
.............................................................................................................................................................................................................................................................................................ACA------CCAGCAG------------------------CA------------GCA---GCAGC.......................................................................................................	20	20	0.05	1	0	1	0	0	0	0	0
........................................................................................................................................................................................................................AACA-----------GCAGCA---ACAGCAACA............................................................................................................................................................................................................	19	20	0.05	1	1	0	0	0	0	0	0
.........................................................................................................................................................................................................................ACA-----------GCAGCA---ACAGCAACAGC..........................................................................................................................................................................................................	20	20	0.05	1	0	1	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................CA------CCAGCAG------------------------CA------------GCA---GCAGCA......................................................................................................	20	20	0.05	1	0	0	0	0	0	1	0
............................................................................................................................................................................................................................................................................................AACA------CCAGCAG------------------------CA------------GCA---GCA.........................................................................................................	19	20	0.05	1	1	0	0	0	0	0	0

droYak3

AGACCG-----CCCCGGCAG---CAACAGCAG--------CAG---CACCAACAAC---AACAAGCATTCGCGTCGCAGCAGCGC--------CG---GCAGCAACAATAACAAATAGCAAAAACTGAGCAGCGTTCGGCAAAGCGCA------------------------GCAACAG---C---------AACAAAGGCAA---CACTAAAACTAACA-----------GCAGCG---------ACACCAAT---------------TGCTACT------GCAACA------CCAGCAG------------------------CA---------------------GAAACAA---------------CCAAGCGGCGGCAA------------------------------GTCA---------------------GCAGCAGCAACAAC	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
.............................................................................AGCAGCGC--------CG---GCAGCAACAA.........................................................................................................................................................................................................................................................................................................................................................	20	2	0.50	1	0	0	0	0	0	1	0	0	0	0	0

droSec2

AGACCG-----CCCCGGCAG---CAACAGCAG--------CAG---CACCAGCAAC---AACAAGCATTCGCGTCGCAGCAGCGC--------CG---GCAGCAACAACAACAAATAGCAAAAACTAAGCAGCGTTCGGCAAAGCGCA------------------------GCAACAG---C---------AACAAAGGCAA---CACTAAAACTAACA-----------GCAGCA---------ACACCAAT---------------TGCAACT------GCAGCA------CCAGCAG------------------------CAGCAGCAGCATCAACAACAACAACAACAG---------------CCAAGCGGCGGCAA------------------------------GTCA---------------------GCAGCAGCAACAAG	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
..........................CAGCAG--------CAG---CACCAGCAAC---..........................................................................................................................................................................................................................................................................................................................................................................................................	19	16	0.06	1	0	0	1	0
............................................................................................................................................................................................................................................................................................AGCA------CCAGCAG------------------------CAGCAGC.........................................................................................................................	18	20	0.05	1	1	0	0	0
........................AACAGCAG--------CAG---CACCAGC................................................................................................................................................................................................................................................................................................................................................................................................................	18	20	0.05	1	1	0	0	0

droSim2

AGACCG-----CCCCGGCAG---CAACAGCAG--------CAG---CACCAGCAAC---AACAAGCATTCGCGTCGCAGCAGCGC--------CG---GCAGCAACAACAACAAATAGCAAAAACTAAGCAGCGTTCGGCAAAGCGCA------------------------GCAACAG---C---------AACAAAGGCAA---CACTAAAACTAACA-----------GCAGCA---------ACACCACT---------------TGCAACT------GCAGCA------CCAGCAG------------------------CAGCAGCAGCAGCATCGACAACAACAACAG---------------CCAAGCGGCGGCAA------------------------------GTCA---------------------GCAGCAGCAACAAG	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
............................................................................................................................................AAAGCGCA------------------------GCAACAG---C---------AACAAAGGC............................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0

dm3

AGACCG-----CCCCGGCAG---CAACAGCAG--------CAG---CACCAGCAAC---AACAAGCATTCGCGTCGCAGCAGCGC--------CG---GCAGCAACAACAACAAATAGCAAAAACTTAGCAGCGTTCGGCAAAGCGCA------------------------GCAAAAG---C---------AACAAAGGCAA---CACTAAAACTAACA-----------GCAGCA---------ACACCAAT---------------TGCAACT------GCAGCA------CCAGCAG------------------------CA------------TCAACAACAACAACAA---------------CCAAGCGGCGGCAA------------------------------GTTA---------------------GCAGCAGCAACAAC	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
...........................................................................................................................................................................................................................................CA---------ACACCAAT---------------TGCAACT------GCA........................................................................................................................................................................	20	1	3.00	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................AGCGCA------------------------GCAAAAG---C---------AACA.................................................................................................................................................................................................................................................................	18	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................TAGCAGCGTTCGGCAAAGGT...................................................................................................................................................................................................................................................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................TAGCAGCGTTCGGCAAAGCGCA------------------------G........................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................GCAG------------------------CA------------TCAACAACAACA......................................................................................................	18	7	0.71	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................AACAACAACAACAA---------------CCAAGCG............................................................................	21	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................AGCAG------------------------CA------------TCAACAACAACAACAA---------------C..................................................................................	24	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................CAACAACAACAACAA---------------CCAAGCG............................................................................	22	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................ACAACAACAACAA---------------CCAAGC.............................................................................	19	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................CAACAACAACAACAA---------------CCAAG..............................................................................	20	4	0.25	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................CAG--------CAG---CACCAGCAAC---AAC.......................................................................................................................................................................................................................................................................................................................................................................................................	19	6	0.17	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................CAGCAG------------------------CA------------TCAACAACAAC.......................................................................................................	19	8	0.13	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.........................ACAGCAG--------CAG---CACCAGCA...............................................................................................................................................................................................................................................................................................................................................................................................................	18	16	0.06	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................CAG---CAACAGCAG--------CAG---CACC...................................................................................................................................................................................................................................................................................................................................................................................................................	19	16	0.06	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................CAACAGCAG--------CAG---CACCAGC................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droEug1

AGATCG-----CCCCGGCAG---CAA---------CA-----------------AC---AACAACCATTCGCGTCGCAGCAGCGCT--------------AGCAACAACAATAAATAGCAAAAACTGAGCAGCGTTCGGCAAAGCGCA------------------------GCAACAG---C---------AACAAAAGCAA---CACTAAAACTAACAGCAGCAGC--------A---------AAACCAAT---------------TGCAACT------GCAGCAGTAACAACA------------------------------------------ACAACAACAGCAACAT---------------CCAAACGGCGACAAGCGG---------------------------TCA---------------------ACAGCAGCAACA--	Size	Hit Count	Total Norm	Total
No Reads

droBia1

AGACCG-----CCCCGCCAG---CAA---------CA-----------GCA---GC---AACAACCATTCGCGTCGCAGCAGCGCC--------------AGCAACAACAACAAATAGCAAAAACTGAGCAGCGTTCGGCAAAGCGCA------------------------GCAACAG---C---------AACAAAGGCAA---CACTGAAAATAACA-----------ACGGCA---GCAGCAGCAGCAGCAGCAACAACACAAATTGCAACT------GC---------------------------------------------------------AACGGCAGCAACAA---------------CCAAGCGGCGACAGGCGG---------------------------TAA------ACAGCA---------GCAGCAGCAGCGGC	Size	Hit Count	Total Norm	Total
No Reads

droTak1

AGACCG-----CCCCGGCAG---CAA---------CA-----------------AC---AACAACCACTCGCGTCGCAGCAGCGCC--------------AGCAACAACAACAAATAGCAAAAACTGAGCAGCGTTCGGCAAAGCGCA------------------------GCAACAG---C---------AACAAAGGCAA---CACTGAAACTAACAGCAGCAGC--------A---------ACACCAAT---------------TGCAATT------GCAA------------------------------------------------------------CAGCAACAA---------------CCAAGCGGCGACAGGCGG---------------------------TA------------------------------------	Size	Hit Count	Total Norm	Total
No Reads

droEle1

AGACCG-----CCCCGGCAG---CAA---------CA-----------A---CAAC---AACAACCATTCGCGTCGCAGCAGCGCC--------------AGCAACAACAACAAATAGCAAAAACTGAGCAGCGTTCGGCAAAGCGCA------------------------GCAACAG---C---------AACAAAGGCAA---CACTAAAAATAACA-----------CCAGCA---GCAGCAACAGCAGC---------------AGCAGCA------GCAA---------------------------------------------------CAGCAGCAGCAACAACAA---------------CCAAGCGGCGACAAGCGG---------------------------T------------------------CAACAGCAACAAC	Size	Hit Count	Total Norm	Total
No Reads

droRho1

AGACCG-----CCCCGGCAG---CAA---------CA-----------------AC---AACAACCATTCGCGTCGCAGCAGCGCC--------------AGCAACAACAATAAATAGCAAAAACTGAGCAGCGTTCGGCAAAGCGCA------------------------GCAACAG---C---------AACAAAGGCAA---CACTTAAAATAACAGCAACAGA--------A---------ACGCCAAT---------------TGTCACAGCAACTGCAA------CAGCA------------------------------------------------GCAACAACAA---------------CCAAGAGGCGACAAGCGG---------------------------TCA---------------------ACAGTAGCAACAAC	Size	Hit Count	Total Norm	Total
No Reads

droFic1

TGACCG-----CCCCGCCAG---CAA---------CA-----------------AC---AAAAAGCATTCGCGTCGCAGCAGCGCC--------------AGCAACAACAACAAATAGCAAAAACTGAGCAGCGTTCGGCAAAGCGCA------------------------GCAACAG---C---------CACAAAGGCAA---CACTGAAGATAACAGCAGCAGC--------G---------ATACCGAT---------------TGCAACT------GCAACAGCAACAGCAGCAG------------------------CA------G------CAACAACAGCAGCAGCGGTAGCAACAGCAAGCAAGCGGCGACAAGCGG---------------------------TCA---------------------TCAGCAGCAGCAGC	Size	Hit Count	Total Norm	Total
No Reads

droKik1

AGCCCA-----CT-----AG---CGGCGGCAGCAACA-----------GCAGCAAC---AATAAGCATTCCCGTCGCAGCAGTGCC--------------AGCAACAATAACA-ATAGCAAAAACTGAGCAGCGTTCGGCAAAGCGCA------------------------GCAAC---------------AACCAAGGCAA---CACTAAAAACAACA-----------ATAACA---ACAGCAGCAGCA---------------------ACG------GCAA------TAGCAGCAG------------------------CA-------------CAACAACAACAACAA---------------CGTTGCAGTCGCA--------------------------------GTC---------------------GCAGCAGAAGTCGC	Size	Hit Count	Total Norm	Total
No Reads

droAna3

CGGCAG-----CGG-AGTTG---CAA---------CTGCACCGCAGCAAC---AGTCGC------------AGTCGCAGCAGCAACAGCAA--CA---GCAGCAGC-------AACAGCAATCG-----CAGC---TAG--TAGGGCA------------------------GCAGCAG---C---------AGCAGCAGCAA---CAACAACAGTCACAACAACAGC--------A---------GCAACAAT---------------CGCAGCA------GCAACA------GCAACAG------------CAACAACAGCAGC------------AGCAGCAGCAACAACTA---------------TCGAGCGA---TTC------------------------------TGTT---------------------GCAGCAGCAGCAGC	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
...................................................................................................................................GC---TAG--TAGGGCA------------------------GCAGCAG---C---------AGC..................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	1	0
..........................................................................................................................................G--TAGGGCA------------------------GCAGCAG---C---------AGCAGCAGC............................................................................................................................................................................................................................................................	25	1	1.00	1	0	1	0	0	0	0
........................................................CGC------------AGTCGCAGCAGCAAC...............................................................................................................................................................................................................................................................................................................................................................................	18	4	0.25	1	0	1	0	0	0	0
........................................................................................CAA--CA---GCAGCAGC-------AACAGCAAT...........................................................................................................................................................................................................................................................................................................................................	22	5	0.20	1	0	0	0	0	0	1
............................................................................................................................................................................................................................................................................................................................CAACAGCAGC------------AGCAGCAGC..........................................................................................................	19	20	0.15	3	0	3	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................AACAACAGCAGC------------AGCAGC.............................................................................................................	18	20	0.15	3	0	3	0	0	0	0
............................................................................................................................................................................................................................................................................................................G------------CAACAACAGCAGC------------AGCAGC.............................................................................................................	20	20	0.15	3	0	2	1	0	0	0
...................................................................................................................................................A------------------------GCAGCAG---C---------AGCAGCAGCA...........................................................................................................................................................................................................................................................	19	20	0.10	2	2	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................G------------CAACAACAGCAGC------------AGCAGCAGC..........................................................................................................	23	20	0.10	2	0	2	0	0	0	0
...................................................................................................................................................A------------------------GCAGCAG---C---------AGCAGCAGCAA---C......................................................................................................................................................................................................................................................	21	20	0.10	2	0	2	0	0	0	0
...............................................................................................................................................GGGCA------------------------GCAGCAG---C---------AGCAGCAGCA...........................................................................................................................................................................................................................................................	23	11	0.09	1	1	0	0	0	0	0
.................................................................................GCAACAGCAA--CA---GCAGCAGC-------AACAGC..............................................................................................................................................................................................................................................................................................................................................	26	14	0.07	1	0	1	0	0	0	0
...............................................................................................................................................GGGCA------------------------GCAGCAG---C---------AGCAGCAG.............................................................................................................................................................................................................................................................	21	15	0.07	1	1	0	0	0	0	0
............................................................................................................................................................................................................................................................................................AACA------GCAACAG------------CAACAACAGC..................................................................................................................................	21	17	0.06	1	0	1	0	0	0	0
...........................................................................................................................................................................................................................................................................................................AG------------CAACAACAGCAGC------------AGCAGCAGCA.........................................................................................................	25	20	0.05	1	0	0	1	0	0	0
.........................................................................................................................................................................................................................................................................................................ACAG------------CAACAACAGCAGC------------AGC................................................................................................................	20	20	0.05	1	0	1	0	0	0	0
...........................................................................................................................................................................................................................................................................................................AG------------CAACAACAGCAGC------------AGCAGCAGC..........................................................................................................	24	20	0.05	1	0	0	1	0	0	0
...............................................................................................................................................................................................................................................................................................A------GCAACAG------------CAACAACAGCAGC------------AGC................................................................................................................	24	20	0.05	1	0	1	0	0	0	0
.........................................................................................................................................................................................................................................................................................................ACAG------------CAACAACAGCAGC------------AGCAGCA............................................................................................................	24	20	0.05	1	0	0	0	0	0	1
..........................................................................................................................................................................................................................................................................................................CAG------------CAACAACAGCAGC------------AGCAGCAGCA.........................................................................................................	26	20	0.05	1	0	1	0	0	0	0
................................................................................AGCAACAGCAA--CA---GCAGCAGC-------....................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	1
..............................................................................GCAGCAACAGCAA--CA---GCAGCAGC-------AAC.................................................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	0	1	0	0	0	0
..............................................................................................................................................................................AGCAG---C---------AGCAGCAGCAA---CAA....................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	1
............................................................................................................................................................................GCAGCAG---C---------AGCAGCAGCAA---CA.....................................................................................................................................................................................................................................................	21	20	0.05	1	1	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................AG------------CAACAACAGCAGC------------AGCA...............................................................................................................	19	20	0.05	1	0	1	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................ACAACAGCAGC------------AGCAGCAG...........................................................................................................	19	20	0.05	1	0	0	1	0	0	0
......................................................................................AGCAA--CA---GCAGCAGC-------AACAG...............................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	1	0	0	0	0
..................................................................................................................................................CA------------------------GCAGCAG---C---------AGCAGCAGCAA---CA.....................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	0	0	1
..................................................................................................................................................................................G---C---------AGCAGCAGCAA---CAACAACA...............................................................................................................................................................................................................................................	21	20	0.05	1	1	0	0	0	0	0
....................................................................................ACAGCAA--CA---GCAGCAGC-------AAC.................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	1	0	0	0	0
............................................................................................................................................................................................................................................................................................................................CAACAGCAGC------------AGCAGCAGCAACA......................................................................................................	23	20	0.05	1	0	1	0	0	0	0
...........................................................................................................................................................................................................................................................................................CAACA------GCAACAG------------CAACAA......................................................................................................................................	18	20	0.05	1	0	0	1	0	0	0
...................................................................................AACAGCAA--CA---GCAGCAGC-------AACAGC..............................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	1	0	0	0	0
......................................................................................AGCAA--CA---GCAGCAGC-------AACAGC..............................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................ACAACAGCAGC------------AGCAGCAGCAACA......................................................................................................	24	20	0.05	1	0	0	0	0	0	1
.................................................................................................................................................GCA------------------------GCAGCAG---C---------AGCAGCAGC............................................................................................................................................................................................................................................................	20	20	0.05	1	1	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................GCAACA------GCAACAG------------CAACAACA....................................................................................................................................	21	20	0.05	1	0	1	0	0	0	0
..................................................................................................................................................................................................................................................................................CA------GCAACA------GCAACAG------------CAACAAC.....................................................................................................................................	22	20	0.05	1	0	1	0	0	0	0
.......................................................................................GCAA--CA---GCAGCAGC-------AACAGC..............................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	1
..............................................................................GCAGCAACAGCAA--CA---GCAGCAGC-------A...................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	1	0	0	0	0	0
........................................................................................CAA--CA---GCAGCAGC-------AACAGCA.............................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	1	0	0	0
.................................................................................................................................................................................AG---C---------AGCAGCAGCAA---CAACAACAG..............................................................................................................................................................................................................................................	23	20	0.05	1	1	0	0	0	0	0

droBip1

CGGTTG-----CAACAGCAG---CAG---------CA-----------GCAACAAC---AACAA---CGC---TTGCAACAACAG--------CA---GCAACAACAACAACA------------------ACGTCTA--------------------------CAACAGCAGCAGCAG---C---------AACAACAGCAA---CGCTTGCAACAGCA-----------GCAGCA---ACAACAGCAGCGCT---------------TGCAGCA------GCAACG------CTTGCAA------------------------CA------------GCAGCAACAACAACAG---------------CAACGCG--TGC--------------------------------AACA---------------------ACAGCAGCAACAAC	Size	Hit Count	Total Norm	Total
No Reads

dp5

AA-CAG-----CAGCAGCAG---CAGAAGCAG--------CAGCAGCAAC---AGCAGCAACA------------GCAGCAGCAA------CA--GC------AGCA--------------------------------------GCAGCAACAGCAA------CAACA---GCAGCAG---CAACAGCAGCAGCAACAGCAG---CAGCA---------ACAGCA--GCAGCAAC---AGCAGCAGCAGCAT---------C------AGCAA------------------CATCAGCAGCAAAAGCATCAGCAACAGCAGCAGC-----------------------------------------------AGCAGCAGC--------------------------------ATAA---------------------GCAGCAGCAACAGC	Size	Hit Count	Total Norm	Total	M022 Male-body	M040 Female-body	M059 Embryo	M062 Head	V043 Embryo	V051 Head	V112 Male-body	SRR902010 Ovary	SRR902011 Testis	SRR902012 CNS imaginal disc
............................................................................................................................................................AA------CAACA---GCAGCAG---CAACAGC........................................................................................................................................................................................................................................................................	21	20	0.10	2	0	2	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................CAAC---AGCAGCAGCAGCAT---------C------AGCA....................................................................................................................................................................................	23	12	0.08	1	0	1	0	0	0	0	0	0	0	0
......................................................GCAGCAACA------------GCAGCAGCAA------CA--GC------..............................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	1	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................AGCATCAGCAACAGCAGCAGT-----------------------------------------------................................................................................	21	20	0.05	1	0	0	0	0	1	0	0	0	0	0
..............................................................................................................................................................................................GCAGCAACAGCAG---CAGCA---------ACAGC....................................................................................................................................................................................................................................	23	20	0.05	1	0	0	1	0	0	0	0	0	0	0
..............................................................................................................................................................................................................CAGCA---------ACAGCA--GCAGCAAC---AGCAGCA...............................................................................................................................................................................................................	26	20	0.05	1	0	0	0	1	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................CAACAGCAGCAGC-----------------------------------------------AGCAGCA.........................................................................	20	20	0.05	1	0	0	0	0	1	0	0	0	0	0
...............................G--------CAGCAGCAAC---AGCAGCAAC.......................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................AGCAACAGCAA------CAACA---GCAGC....................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................................................AG---CAACAGCAGCAGCAACAGCAG---CAGC...................................................................................................................................................................................................................................................	27	20	0.05	1	0	0	0	0	0	0	0	0	0	1
..................................................................................................................................................................................................................A---------ACAGCA--GCAGCAAC---AGCAGCA...............................................................................................................................................................................................................	22	20	0.05	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................GCAGCAAC---AGCAGCAGCAGCA.........................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	1	0	0	0	0	0
........................................................................................................................................................................................................................................CAAC---AGCAGCAGCAGCAT---------C------A.......................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	0	1	0	0	0
.......................................................................................................................................................................................AACAGCAGCAGCAACAGCAG---CA.....................................................................................................................................................................................................................................................	22	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.....................................................AGCAGCAACA------------GCAGCAGCAA------CA--GC------..............................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	1	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................AACAGCAGCAGC-----------------------------------------------AGCAGCAGC--------------------------------A......................................	22	20	0.05	1	0	0	0	0	1	0	0	0	0	0
...........................................................................................................................................................CAA------CAACA---GCAGCAG---CAACAGCAG......................................................................................................................................................................................................................................................................	24	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................................................AG---CAACAGCAGCAGCAACAGCAG---C......................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	0	0	0	0	0	0	1
........................................................AGCAACA------------GCAGCAGCAA------CA--GC------AGC...........................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	0	0	0	0	0	0	1
..............................................................................................................................................................................................GCAGCAACAGCAG---CAGCA---------ACAGCA--GCA..............................................................................................................................................................................................................................	27	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................ACAGCAA------CAACA---GCAGCAG---CA.............................................................................................................................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................GCAG---CAACAGCAGCAGCAACAGC............................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	1	0	0	0	0	0	0	0
...............................G--------CAGCAGCAAC---AGCAGCAACA------------GC........................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	1	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................AACAGCAGCAGC-----------------------------------------------AGCAGCAG........................................................................	20	20	0.05	1	0	0	0	0	1	0	0	0	0	0
.................................................................................................................................................GCAGCAACAGCAA------CAACA---GCAGCA...................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	0	1	0	0	0	0	0
.........................................................GCAACA------------GCAGCAGCAA------CA--GC------AGCA--------------------------------------GC..................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	1
...........................................................................................CA--GC------AGCA--------------------------------------GCAGCAACAGC.........................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	0	1	0	0	0	0	0
................................................................................................................................................................................................AGCAACAGCAG---CAGCA---------ACAGCA--GCAGC............................................................................................................................................................................................................................	27	20	0.05	1	0	0	0	0	0	0	0	0	0	1
........................................CAGCAGCAAC---AGCAGCAACA------------..........................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	0	1	0	0	0	0
...............................................................................................................................................................................GCAG---CAACAGCAGCAGCAACA..............................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	1	0	0	0	0	0
..........................................................................................................................................................................................................G---CAGCA---------ACAGCA--GCAGCAAC---AGC...................................................................................................................................................................................................................	23	20	0.05	1	0	0	1	0	0	0	0	0	0	0
........................................CAGCAGCAAC---AGCAGCAACA------------GCA.......................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	1	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................GCAGCAACAGCAG---CAGCA---------ACA......................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	1	0	0	0	0	0
..............................................................................................................................................................................AGCAG---CAACAGCAGCAGCAACAGC............................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	1	0	0	0	0	0	0	0
...........................................................AACA------------GCAGCAGCAA------CA--GC------AGCA--------------------------------------....................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................GCAACAGCAGCAGC-----------------------------------------------AGCAGCA.........................................................................	21	20	0.05	1	0	0	0	0	1	0	0	0	0	0
...................................................................................................................................................................................................AACAGCAG---CAGCA---------ACAGCA--GCA..............................................................................................................................................................................................................................	22	20	0.05	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................AGCA---------ACAGCA--GCAGCAAC---AGCAGC................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	0	0	0	0	0	0	1
...............................................................................................................................................................................GCAG---CAACAGCAGCAGCAACAGCAG---CA.....................................................................................................................................................................................................................................................	27	20	0.05	1	0	1	0	0	0	0	0	0	0	0
........................................................................................................................................................................................ACAGCAGCAGCAACAGCAG---C......................................................................................................................................................................................................................................................	20	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................AGCAA------CAACA---GCAGCAG---CAA............................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	0	1	0	0	0	0	0
..............................................................................GCAGCAA------CA--GC------AGCA--------------------------------------GCAGCA..............................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	1	0	0	0	0	0
..................................................................................................................................................................................G---CAACAGCAGCAGCAACAGCAG---CAGC...................................................................................................................................................................................................................................................	26	20	0.05	1	0	0	0	0	0	0	0	0	0	1
...............................................................................................................................................................................................CAGCAACAGCAG---CAGCA---------ACAGCA--GCA..............................................................................................................................................................................................................................	26	20	0.05	1	0	0	0	1	0	0	0	0	0	0
......................................................GCAGCAACA------------GCAGCAGCAA------CA--......................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	1	0	0	0	0	0
..............................................................................GCAGCAA------CA--GC------AGCA--------------------------------------GCAGCAACAGCA........................................................................................................................................................................................................................................................................................................	27	20	0.05	1	0	0	0	0	0	0	0	0	0	1
.......................................................CAGCAACA------------GCAGCAGCAA------CA--GC------AGCA--------------------------------------....................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	0	0	0	1	0	0	0	0	0	0
..............................AG--------CAGCAGCAAC---AGCAGCAACA------------GCAGCA....................................................................................................................................................................................................................................................................................................................................................................................	28	20	0.05	1	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................................................................AGCAACAGCAG---CAGCA---------ACAGCA--GC...............................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	0	0	0	0	0	0	1
......................................................GCAGCAACA------------GCAGCAGCAA------CA--GC------AGCA--------------------------------------....................................................................................................................................................................................................................................................................................................................	27	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................TCAGCAACAGCAGCAGC-----------------------------------------------AGCAGC..........................................................................	23	20	0.05	1	0	0	0	0	1	0	0	0	0	0
........................................................AGCAACA------------GCAGCAGCAA------CA--GC------AGCA--------------------------------------GC..................................................................................................................................................................................................................................................................................................................	27	20	0.05	1	0	0	0	0	0	0	0	0	0	1
..................................................................................CAA------CA--GC------AGCA--------------------------------------GCAGCAACAGC.........................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................C---AGCAGCAGCAGCAT---------C------AGCA....................................................................................................................................................................................	20	20	0.05	1	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................AGCA---------ACAGCA--GCAGCAAC---AGCAGCAGC.............................................................................................................................................................................................................	27	20	0.05	1	0	0	0	0	0	0	0	0	0	1
................................................................................................................................................................................CAG---CAACAGCAGCAGCAACAGCAG---CA.....................................................................................................................................................................................................................................................	26	20	0.05	1	0	0	0	1	0	0	0	0	0	0
............................................................ACA------------GCAGCAGCAA------CA--GC------AGC...........................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................AGCA--------------------------------------GCAGCAACAGCAA------CAACA---.........................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	1	0	0	0	0	0	0	0	0
....................................................................................................................................................GCAACAGCAA------CAACA---GCAGCAG---C..............................................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	0	0	0	1	0	0	0
........................................................................................................GCA--------------------------------------GCAGCAACAGCAA------CAACA---GC.......................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	0	1	0	0	0	0	0

droPer2

AGGCGATCCAGCAGCATCAC---CAGCATCTC--------CAGCAGCAAC---ATCATCATCA------------GCAGCAGCAT------CA--GG------CGCA----------GCAGCAGG--CAC--------------------------AG------CAACA---GCAGCAG---CAACAGCAGGCTCAGCAGCAG---GCTCA---------GCAACA--GCAACAAC---AACAGCAGCAACAA---------C------AGCAA------------------CAACAACAGCAACAACAGCAGCAACAGCAGCAGC---------------A------GCAACA-------------------------------------------------------------ACA---------------------ACAGCAGCAACAGA	Size	Hit Count	Total Norm	Total	M021 Embryo	M042 Female-body	V042 Embryo	V050 Head	V057 Head	V111 Male-body
.....ATCCAGCAGCATCAC---CAGCATCT......................................................................................................................................................................................................................................................................................................................................................................................................................................	23	1	1.00	1	0	1	0	0	0	0
...........................................CAGCAAC---ATCATCATCA------------GC........................................................................................................................................................................................................................................................................................................................................................................................	19	5	0.40	2	2	0	0	0	0	0
............................................AGCAAC---ATCATCATCA------------GCA.......................................................................................................................................................................................................................................................................................................................................................................................	19	4	0.25	1	0	1	0	0	0	0
.....................................................................................................................................................................................................................................................................................................AACAACAGCAACAACAGCAGCAACAG......................................................................................................................................	26	5	0.20	1	0	1	0	0	0	0
........................................................................................................................................................................................................................................................................................................AACAGCAACAACAGCAGCAACAG......................................................................................................................................	23	9	0.11	1	0	1	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................AGCAACAGCAGCAGC---------------A------GCAACA-------------------------------------------------------------......................................	22	20	0.10	2	0	0	2	0	0	0
.................................................................................................................................................................................................................................................................................A------------------CAACAACAGCAACAACAGCAGC...........................................................................................................................................	23	11	0.09	1	0	0	1	0	0	0
........................................................................................................................................................................................................................................................................................................AACAGCAACAACAGCAGCAAC........................................................................................................................................	21	20	0.05	1	0	1	0	0	0	0
.................................................................................................................................................................................................................................A--GCAACAAC---AACAGCAGCAACA.........................................................................................................................................................................................................	22	20	0.05	1	0	0	1	0	0	0
...................................................................................................................................................................................................................................................................................................................................AGC---------------A------GCAACA-------------------------------------------------------------ACA---------------------ACAGCAG.......	20	20	0.05	1	0	1	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................CAGC---------------A------GCAACA-------------------------------------------------------------ACA---------------------ACAGCAGC......	22	20	0.05	1	1	0	0	0	0	0
......................................................................................................................................................................................................................................AACAAC---AACAGCAGCAACAA---------C------A.......................................................................................................................................................................................	22	20	0.05	1	0	1	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................A------GCAACA-------------------------------------------------------------ACA---------------------ACAGCAGCAACA..	22	20	0.05	1	0	0	1	0	0	0
...............................................................................................................................................................................................................................................................................................................................CAGCAGC---------------A------GCAACA-------------------------------------------------------------ACA---------------------ACAGCAGCA.....	26	20	0.05	1	0	0	1	0	0	0

droWil2

AG-CAA-----CTGCAGCAG---CAACAACAA---CAA--CAG---CAGC---AACAACAACA------------GCAGCAGCAA--------CAACAGCAGCAACAACAACA-GCAGCAGCAAC--AACAGCAT-CA----------------------------------GCAACAG---CAACAGCAGCAACAATGGCAG---CAG---------CAACAACAGC--------A---------ACATCAAC---------------TGCAGCA------GCAACAGCGACAGCAGCAA------------------------------------CAATGGCAGCAACAACAA---------------C--AGCGACAACA--------------------------------ACT---------------------GCAGCAGCAACAAC	Size	Hit Count	Total Norm	Total	M020 Head	M045 Female-body	V117 Male-body	V118 Embryo	V119 Head
...........................................................................................................................................................................................................................................................................................................AA------------------------------------CAATGGCAGCAACAACAA---------------C--AG..............................................................................	23	20	0.70	14	0	14	0	0	0
...........................................................................................................ACAACA-GCAGCAGCAAC--A.....................................................................................................................................................................................................................................................................................................................................	18	20	0.20	4	0	0	0	4	0
......................................................................................................................................T-CA----------------------------------GCAACAG---CAACAGCAGCAACAAT...............................................................................................................................................................................................................................................................	26	6	0.17	1	0	1	0	0	0
...........................................................................................................................................................................................................................................................................................................AA------------------------------------CAATGGCAGCAACAACAA---------------C--AGC.............................................................................	24	20	0.15	3	0	2	0	1	0
..........................................................................................................................................................................................................................................................................................GCAACAGCGACAGCAGCAA------------------------------------C...................................................................................................................	20	7	0.14	1	0	1	0	0	0
..............................................................................................................................................................................AACAG---CAACAGCAGCAACAATGG.............................................................................................................................................................................................................................................................	23	20	0.10	2	0	2	0	0	0
..............................................................................................................................................................................AACAG---CAACAGCAGCAACAATGGC............................................................................................................................................................................................................................................................	24	20	0.10	2	0	2	0	0	0
......................................................................................................................................T-CA----------------------------------GCAACAG---CAACAGCAGCAACA.................................................................................................................................................................................................................................................................	24	10	0.10	1	0	0	0	1	0
.................................................C---AACAACAACA------------GCAGCAGCAA--------CA......................................................................................................................................................................................................................................................................................................................................................................	23	20	0.10	2	0	0	0	1	1
.................................................C---AACAACAACA------------GCAGCAGCAA--------C.......................................................................................................................................................................................................................................................................................................................................................................	22	20	0.10	2	0	0	0	2	0
......................................................................................................CAACAACAACA-GCAGCAGCAAC--......................................................................................................................................................................................................................................................................................................................................	22	20	0.10	2	0	0	0	2	0
...................................CAA--CAG---CAGC---AACAACAACA------------..........................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.10	2	0	0	0	2	0
.......................CAACAACAA---CAA--CAG---CAGC---................................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.10	2	0	2	0	0	0
.................................................C---AACAACAACA------------GCAGCAGCA.................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.10	2	0	0	0	2	0
..........................................................................................................................................................................................................................................................................................................CAA------------------------------------CAATGGCAGCAACAACAA---------------C--AG..............................................................................	24	20	0.10	2	0	1	0	1	0
............................................................................................................................C--AACAGCAT-CA----------------------------------GCAACAG---CAACAGCAG......................................................................................................................................................................................................................................................................	27	12	0.08	1	0	0	0	1	0
............................................................................................................CAACA-GCAGCAGCAAC--AACAGCAT-CA----------------------------------G........................................................................................................................................................................................................................................................................................	27	12	0.08	1	0	0	0	1	0
.........................................................................................................................CAAC--AACAGCAT-CA----------------------------------GCAACAG---CAACAG.........................................................................................................................................................................................................................................................................	27	12	0.08	1	0	1	0	0	0
.........................................................................................................................CAAC--AACAGCAT-CA----------------------------------GCAACAG---C..............................................................................................................................................................................................................................................................................	22	14	0.07	1	0	0	0	1	0
............................................................................................................................................................................................................................................................................................AACAGCGACAGCAGCAA------------------------------------C...................................................................................................................	18	16	0.06	1	0	0	0	1	0
..................................................................................................................................AGCAT-CA----------------------------------GCAACAG---CAACAGCAG......................................................................................................................................................................................................................................................................	23	17	0.06	1	0	1	0	0	0
............................................................................................................................C--AACAGCAT-CA----------------------------------GCAACAG---C..............................................................................................................................................................................................................................................................................	19	17	0.06	1	0	0	0	1	0
.............................................................................................................................................................................................................................................................................................ACAGCGACAGCAGCAA------------------------------------CA..................................................................................................................	18	18	0.06	1	0	0	0	1	0
.....................................................................................................................................AT-CA----------------------------------GCAACAG---CAACAGCAGCAAC..................................................................................................................................................................................................................................................................	24	19	0.05	1	0	1	0	0	0
.....................................................................................................................................AT-CA----------------------------------GCAACAG---CAACAGCAGC.....................................................................................................................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0
...................G---CAACAACAA---CAA--CAG---CAGC---A...............................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	1	0
.......................................................CAACAACA------------GCAGCAGCAA--------CAACAG..................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	1	0	0	0
..................................................................................................................................................................................................................................................................................................................................................AATGGCAGCAACAACAA---------------C--AGC.............................................................................	21	20	0.05	1	0	1	0	0	0
.........................................AG---CAGC---AACAACAACA------------GCAGCAGCAA--------........................................................................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	0	1	0	0	0
............................................................................................................................................................................................................................................................................................................A------------------------------------CAATGGCAGCAACAACAA---------------C--AG..............................................................................	22	20	0.05	1	0	1	0	0	0
.........................................................ACAACA------------GCAGCAGCAA--------CAACA...................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0
..........................................................................................................................................................................................................................................................................................................CAA------------------------------------CAATGGCAGCAACAACAA---------------C--AGC.............................................................................	25	20	0.05	1	0	1	0	0	0
.....................................................AACAACAACA------------GCAGCAGCAA--------........................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	1	0	0
...........................AACAA---CAA--CAG---CAGC---AACAACAACA------------G.........................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	0	0	0	1	0
.............................................................................................................................................................................CAACAG---CAACAGCAGCAACAATGGC............................................................................................................................................................................................................................................................	25	20	0.05	1	0	1	0	0	0
..................AG---CAACAACAA---CAA--CAG---CAGC---................................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0
.............................................................CA------------GCAGCAGCAA--------CAACAGCAGCA.............................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	1	0	0	0
.....................................................................................................GCAACAACAACA-GCAGCAGCA..........................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0
....................................AA--CAG---CAGC---AACAACAACA------------GCA.......................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	0	1
.................................................................................................AGCAGCAACAACAACA-GCAGCAGCAA.........................................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	0	1	0	0	0
.................CAG---CAACAACAA---CAA--CAG---CAGC---AAC.............................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	1	0
..................AG---CAACAACAA---CAA--CAG---CAGC---AAC.............................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	1	0
................GCAG---CAACAACAA---CAA--CAG---CAGC---A...............................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	1	0
..............................................................................GCAGCAA--------CAACAGCAGCAAC...........................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	1	0
.................CAG---CAACAACAA---CAA--CAG---CA.....................................................................................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	1	0
......................................................................................................CAACAACAACA-GCAGCAGCAAC--A.....................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	1	0
...................G---CAACAACAA---CAA--CAG---CA.....................................................................................................................................................................................................................................................................................................................................................................................................................	18	20	0.05	1	0	1	0	0	0
.............................................................................................................AACA-GCAGCAGCAAC--AACAGCA...............................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	1	0	0	0
....................................................................................................................................CAT-CA----------------------------------GCAACAG---CAACAGCA.......................................................................................................................................................................................................................................................................	20	20	0.05	1	0	0	0	1	0
.....................................................................................................GCAACAACAACA-GCAGCAGCAAC--A.....................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	1	0
.................................................................................................................................................................................AG---CAACAGCAGCAACAATGG.............................................................................................................................................................................................................................................................	20	20	0.05	1	0	1	0	0	0
..............................AA---CAA--CAG---CAGC---AACAACA.........................................................................................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	1	0
...............AGCAG---CAACAACAA---CAA--CAG---CAG....................................................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	1	0
...........................................................................................................ACAACA-GCAGCAGCAAC--AA....................................................................................................................................................................................................................................................................................................................................	19	20	0.05	1	0	0	0	1	0
...........................................................................................................ACAACA-GCAGCAGCAAC--AACA..................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	1	0	0	0
..............................................................................................AACAGCAGCAACAACAACA-GC.................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	1	0
...........................................................AACA------------GCAGCAGCAA--------CAACAGCA................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	1	0	0	0
.....................................................................................................................................................................................................................................................................................................AGCAGCAA------------------------------------CAATGGCAGCAACAACA...................................................................................................	25	20	0.05	1	0	1	0	0	0
...............................................AGC---AACAACAACA------------GCAGCAGCAA--------CA......................................................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	1	0
...................................................................................................CAGCAACAACAACA-GCAGCAG............................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	1	0
.............................CAA---CAA--CAG---CAGC---AACAACAACA------------..........................................................................................................................................................................................................................................................................................................................................................................................	23	20	0.05	1	0	0	0	0	1
................................................GC---AACAACAACA------------GCAGCAGCAA--------CA......................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	1	0
...................................CAA--CAG---CAGC---AACAACAACA------------GC........................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	1	0	0	0
...............AGCAG---CAACAACAA---CAA--CAG---CA.....................................................................................................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	0	0	1	0
...............................................................................................ACAGCAGCAACAACAACA-GCAG...............................................................................................................................................................................................................................................................................................................................................	22	20	0.05	1	0	1	0	0	0
..........................................G---CAGC---AACAACAACA------------GCAGCAGCA.................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	1	0
..................................................................................................GCAGCAACAACAACA-GCAGCAGCA..........................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	1	0
........................................................AACAACA------------GCAGCAGCAA--------CAACAGCA................................................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	1	0

droVir3

AGGCGT-----CGTCAGCAG---CAG---------CA-----------GCA---GC---AGCAGCAATTCGCGACGCAGCAGCAG--------CA---GCAGCAACAACAACAAATAGCAAAAACTGAGCAGCGTTCGGCAAAGCGCA---------ATCCAGACA------ACAATAT---C---------AACAA---------------------CA-----------ACAACA---ACAACAA---------------------------------------------CAGCA------------------------------------------ACAGCAACAACAACAA---------------CTAAACGCTGCCAGGCCGTTCAGCAGCAGCGTGCAACGACGCCAATTA---------------------GCGGCGGCAGCAGC	Size	Hit Count	Total Norm	Total	M027 Male-body	M028 Head	M047 Female-body	M061 Embryo	SRR060654 Ovary	SRR060655 Testis	SRR060656 Ovary	SRR060657 Testis	SRR060658 Ovary	SRR060659 Testis	SRR060660 Ovary	SRR060661 Embryo	SRR060662 Embryo	SRR060663 Embryo	SRR060664 Male-body	SRR060665 Female-body	SRR060666 Male-body	SRR060667 Female-body	SRR060668 Male-body	SRR060669 Female-body	SRR060670 Testis	SRR060671 Male-body	SRR060672 Female-body	SRR060673 Ovary	SRR060674 Ovary	SRR060675 Ovary	SRR060676 Ovary	SRR060677 Ovary	SRR060678 Testis	SRR060679 Testis	SRR060680 Testis	SRR060681 Testis	SRR060682 Embryo	SRR060683 Testis	SRR060684 Embryo	SRR060685 Embryo	SRR060686 Embryo	SRR060687 Embryo	SRR060688 Ovary	SRR060689 Testis	SRR1106712 embryo_0-2h	SRR1106713 embryo_0-2h	SRR1106714 embryo_2-4h	SRR1106715 embryo_4-6h	SRR1106716 embryo_4-6h	SRR1106717 embryo_6-8h	SRR1106718 embryo_6-8h	SRR1106719 embryo_8-10h	SRR1106720 embryo_8-10h	SRR1106721 embryo_10-12h	SRR1106722 embryo_10-12h	SRR1106723 embryo_12-14h	SRR1106724 embryo_12-14h	SRR1106725 embryo_14-16h	SRR1106726 embryo_14-16h	SRR1106727 larvae	SRR1106728 larvae	SRR1106729 mixed whole adult body	SRR1106730 embryo_16-30h	V047 Embryo	V053 Head	V116 Male-body	GSM1528803 follicle cells
...CGT-----CGTCAGCAG---CAG---------CA-----------GCA---...............................................................................................................................................................................................................................................................................................................................................................................................................	20	5	0.20	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................AGCAG--------CA---GCAGCAACAACA.......................................................................................................................................................................................................................................................................................................................................................	19	20	0.15	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
................GCAG---CAG---------CA-----------GCA---GC---AGCAGCA...................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.15	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................GCAGCAG--------CA---GCAGCAACAAC........................................................................................................................................................................................................................................................................................................................................................	20	20	0.15	3	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................A---ACAACAA---------------------------------------------CAGCA------------------------------------------ACAGCAAC..........................................................................................................	21	20	0.10	2	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................AA---------------------CA-----------ACAACA---ACAACAA---------------------------------------------CAGCA------------------------------------------ACA...............................................................................................................	25	20	0.10	2	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................CGACGCAGCAGCAG--------CA---GCA................................................................................................................................................................................................................................................................................................................................................................	19	11	0.09	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................CGACGCAGCAGCAG--------CA---GC.................................................................................................................................................................................................................................................................................................................................................................	18	14	0.07	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
.....................................................................................................................................................................................................................................................AA---------------------------------------------CAGCA------------------------------------------ACAGCAACAACAACAA---------------CT.................................................................................	25	17	0.06	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........CGTCAGCAG---CAG---------CA-----------GCA---GC---AGCAGCA...................................................................................................................................................................................................................................................................................................................................................................................................	26	18	0.06	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................ACAA---------------------------------------------CAGCA------------------------------------------ACAGCAACA.........................................................................................................	18	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
.................................................................................................................................................................................................................................................CAACAA---------------------------------------------CAGCA------------------------------------------ACAGCAACA.........................................................................................................	20	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................ACA---ACAACAA---------------------------------------------CAGCA------------------------------------------ACAGCAA...........................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................AACAA---------------------------------------------CAGCA------------------------------------------ACAGCAACAAC.......................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........CGTCAGCAG---CAG---------CA-----------GCA---GC---AGCAGC....................................................................................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................CA---ACAACAA---------------------------------------------CAGCA------------------------------------------ACAGCAAC..........................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................ACA---ACAACAA---------------------------------------------CAGCA------------------------------------------ACAGCAAC..........................................................................................................	23	20	0.05	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................AT---C---------AACAA---------------------CA-----------ACAACA---ACAACAA---------------------------------------------CA...............................................................................................................................................................	25	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
............................................................................................................................................................................................................................................A---ACAACAA---------------------------------------------CAGCA------------------------------------------ACAGCAA...........................................................................................................	20	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................A---------------------------------------------CAGCA------------------------------------------ACAGCAACAACAACA...................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...........CGTCAGCAG---CAG---------CA-----------GCA---GC---AGCAG.....................................................................................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................AGCA------------------------------------------ACAGCAACAACAACAA---------------CT.................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................A---------------------CA-----------ACAACA---ACAACAA---------------------------------------------CAGCA------------------------------------------ACAG..............................................................................................................	25	20	0.05	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............TCAGCAG---CAG---------CA-----------GCA---GC---AGCA......................................................................................................................................................................................................................................................................................................................................................................................................	21	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0
...........................................................................................................................................................................................................................................CA---ACAACAA---------------------------------------------CAGCA------------------------------------------ACAGCAACAA........................................................................................................	24	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................CAA---------------------CA-----------ACAACA---ACAACAA---------------------------------------------CAGC.............................................................................................................................................................	22	20	0.05	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droMoj3

AA-CAA-----CAGCAGCAGCAGCAGTAGCAG--------CAG---CAGCAGCAGC---AGCA-GCAGTAGCAGC-----AGCAGCAGCAG--CA---GCAGCAGCAACAACA-GCAGCAGCAGC--AACA--------------GCA------------------GCA---GCAGCAG---CAACAGC---AGCAGCAGCAGCAACAG---------CAGCAGCA-----GCAGCAACAGCAGTAGCAGCA---------------------GCA------GCAA------CAGCAGCAG---------------------------CAGCAACAGCGGCAGCAGCAGCAACAG---------------CAA-----CAGCA-GCAG---------------------CAGC-AGCA---------------------ACAGCAGCAACAGC	Size	Hit Count	Total Norm	Total	M046 Female-body	V041 Embryo	V049 Head	V056 Head	M060 Embryo	V110 Male-body
...................................................................................................................................................................................................................................................................................................................................................................................AA-----CAGCA-GCAG---------------------CAGC-AGCA---------------------..............	19	20	0.20	4	4	0	0	0	0	0
......................................................................................................................................................................GCA---GCAGCAG---CAACAGC---AGCAGC...............................................................................................................................................................................................................................................................	23	20	0.10	2	2	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................CAG---------------------------CAGCAACAGCGGCAGCAGC..........................................................................................................	22	13	0.08	1	0	0	0	0	1	0
.........................................................................................................................................................................................................................................................................................................................................AGCAACAGCGGCAGCAGCAGCA......................................................................................................	22	14	0.07	1	0	0	0	0	1	0
........................................................................................................................................................................................................................................................................................................................................CAGCAACAGCGGCAGCAGCAGC.......................................................................................................	22	18	0.06	1	0	0	0	0	1	0
...................................................................................................CAGCAGCAACAACA-GCAGCAGCAGC--......................................................................................................................................................................................................................................................................................................................................	25	20	0.05	1	0	0	0	0	1	0
.........................................................................................................................................................................................................AGCAACAG---------CAGCAGCA-----GCAGCAACAGC...................................................................................................................................................................................................................	27	20	0.05	1	1	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................AACAG---------------CAA-----CAGCA-GCAG---------------------CAGC-A......................................	22	20	0.05	1	0	0	0	0	1	0
.....................................................................................CAGCAG--CA---GCAGCAGCAACA.......................................................................................................................................................................................................................................................................................................................................................	20	20	0.05	1	1	0	0	0	0	0
.........................................................................................................................CAGC--AACA--------------GCA------------------GCA---GCAGCA...................................................................................................................................................................................................................................................................................	20	20	0.05	1	0	1	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................AGCAACAGCGGCAGCAGCAGC.......................................................................................................	21	20	0.05	1	0	0	1	0	0	0
.............................................................................................................AACA-GCAGCAGCAGC--AACA--------------GCA------------------GCA---GCA......................................................................................................................................................................................................................................................................................	28	20	0.05	1	1	0	0	0	0	0
..........................................................................................G--CA---GCAGCAGCAACAACA-GCAGCA.............................................................................................................................................................................................................................................................................................................................................	24	20	0.05	1	1	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................GCAA------CAGCAGCAG---------------------------CAGCAACA.....................................................................................................................	21	20	0.05	1	1	0	0	0	0	0
..........................................................................................................................AGC--AACA--------------GCA------------------GCA---GCAGCAG---CAACAGC---.....................................................................................................................................................................................................................................................................	27	20	0.05	1	1	0	0	0	0	0
.................................................................................................................................................................................AG---CAACAGC---AGCAGCAGCAGCAACAG---------C..........................................................................................................................................................................................................................................	27	20	0.05	1	1	0	0	0	0	0
....................................................................................................................AGCAGCAGC--AACA--------------GCA------------------GCA---GCA......................................................................................................................................................................................................................................................................................	22	20	0.05	1	1	0	0	0	0	0
....................................................................................................AGCAGCAACAACA-GCAGCAGCAGC--AACA--------------....................................................................................................................................................................................................................................................................................................................	28	20	0.05	1	0	0	0	0	1	0
............................GCAG--------CAG---CAGCAGCAGC---AGCA-GCAGT................................................................................................................................................................................................................................................................................................................................................................................................	26	20	0.05	1	1	0	0	0	0	0
..........................................G---CAGCAGCAGC---AGCA-GCAGTAGCAGC-----AGC..................................................................................................................................................................................................................................................................................................................................................................................	29	20	0.05	1	0	0	0	0	1	0

droGri2

AG-CAG-----CAGCAGCAG---CAGCAGCAG---CAG--CAG---CAGC---AGCAGCAGCA------------GCAGCAGCAG------CA--GCAGCAGCAGCAGCAGC--------------------------------------------AG------CAGCA---GCAGCAG---CAGCAGCAGCAGCAGCAGCAG---CAGCA---------GCAGCA--GCAGCAGC---AGCAGCAGCAGCAG---------C------AGCAG------------------CAGCAGCAGCAGCAGCAGCAGCAGCAGCAGCAGC---------------------AGCAGCAG---------------C--AGCAGCAGCA--------------------------------GCAGTTAAAACAGCAGCAGCATCAGCAGCAGCAAAAAC	Size	Hit Count	Total Norm	Total	M041 Female-body	V109 Male-body
No Reads

der_373

scaffold_4690:4615244-4615381 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Repeatable elements

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-21.7	-21.7	-21.7