ID:

der_327

Coordinate:

scaffold_4644:616709-616859 +

Confidence:

Candidate

Type:

Unknown

[View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-15.4 -15.4 -15.4

Flybase annnotation

CDS [Dere\GG12807-cds]; exon [dere_GLEANR_12862:2]; intron [Dere\GG12807-in]

No Repeatable elements found

mature
  1. scaffold_36:91-118 +
  2. scaffold_133:532-559 +
  3. scaffold_133:722-749 +
  4. scaffold_166:624-651 +
  5. scaffold_166:1529-1556 +
  6. scaffold_2184:1335-1362 +
  7. scaffold_3639:875-902 +
  8. der_327  scaffold_4644:616763-616790 +
  9. scaffold_4784:281412-281439 +
  10. scaffold_4784:281979-282006 +
  11. scaffold_4784:282730-282757 +
  12. scaffold_4784:3473558-3473585 +
  13. scaffold_4784:3596195-3596222 +
  14. scaffold_4784:3596738-3596765 +
  15. scaffold_4784:3597483-3597510 +
  16. scaffold_4784:3597664-3597691 +
  17. scaffold_4929:6045085-6045112 +
  18. scaffold_4929:6046549-6046576 +
  19. scaffold_4929:11918606-11918633 +
  20. scaffold_4929:16084105-16084132 +
star

Sense Strand Reads

---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------##################################################
TAATTTTTTGTAATTTTTCTGATGTATGATGTTGTACAAATTCAAAAATATTAAAGAATGTCCCAATTCTGAAGTTCTAAACTTCATAACTCAATTTATCTTAATCGGATTTTGAAGTGGCATACCTCAAAATGTTTCTGGCGCAATTCTCTAAAATTTTTAAATGTTAACTTATCATCTGCATATATTCCCATTTTCCAGCTGCACTACAATGGCGTCTTCGATTGCTTCGCCAAGATGTACCGCCACGA
**************************************************....(((((((.((((((.(((.((.....((((((.((.((.(((......))).)).)).)))))).....)).))).))).....))).)).))))).............((((.............)))).................**************************************************
Read size # Mismatch Hit Count Total Norm Total GSM1528801
follicle cells
M055
female body
V107
male body
V060
head
M057
embryo
V040
embryo
..........................................................................................................................................................................................................TGCACTACAATGGCGTCTTCGATTGC....................... 26 0 2 3.00 6 5 1 0 0 0 0
..........................................................................................................................................................................................................................CTTCGATTGCTTCGCCAAGATGTACCGC..... 28 0 2 0.50 1 0 0 0 1 0 0
..........................................................................................................................................................................................................TGCACTACAATGGCGTCTTAGATTGC....................... 26 1 2 0.50 1 1 0 0 0 0 0
..........................................................................................................................................................................................................TGCACTACAATGGCGTCTTCGATTGCTT..................... 28 0 2 0.50 1 0 1 0 0 0 0
...........................................................................................................................................................................................................................TTCGATTGCTTCGCCAAGATGTA......... 23 0 2 0.50 1 0 1 0 0 0 0
.........................................................................................................................................................................................................................TCTTCGATTGCTTCGCCAAGATGTACC....... 27 0 2 0.50 1 0 1 0 0 0 0
...........................................................................................................................................................................................................GCACTACAATGGCGTCTTCGAT.......................... 22 0 2 0.50 1 0 0 1 0 0 0
.............................................................................................................................................................................................................................CGATTGCTTCGCCAAGATGTA......... 21 0 2 0.50 1 0 0 1 0 0 0
.........................................................ATGTCCCAATTCTGAAGTTCC............................................................................................................................................................................. 21 1 6 0.17 1 0 0 0 0 1 0
........................................................................................................TCGGATTTTGAAGTGGCATACCTCAAAA....................................................................................................................... 28 0 20 0.10 2 0 2 0 0 0 0
..................................................................................................................................................CTCTCTAAAATTTTTAAG....................................................................................... 18 2 19 0.05 1 0 0 0 0 0 1
........................................................................................................TCGGATTTTGAAGTGGCATACCTCAT......................................................................................................................... 26 1 20 0.05 1 0 0 1 0 0 0
....................GAAGTATGATGTTATACCA.................................................................................................................................................................................................................... 19 3 20 0.05 1 0 0 0 0 0 1
..........................................................................................................................TACCTCAAAATGTTTCTGGCGCAATTCTC.................................................................................................... 29 0 20 0.05 1 0 1 0 0 0 0

Anti-sense strand reads

ATTAAAAAACATTAAAAAGACTACATACTACAACATGTTTAAGTTTTTATAATTTCTTACAGGGTTAAGACTTCAAGATTTGAAGTATTGAGTTAAATAGAATTAGCCTAAAACTTCACCGTATGGAGTTTTACAAAGACCGCGTTAAGAGATTTTAAAAATTTACAATTGAATAGTAGACGTATATAAGGGTAAAAGGTCGACGTGATGTTACCGCAGAAGCTAACGAAGCGGTTCTACATGGCGGTGCT
**************************************************....(((((((.((((((.(((.((.....((((((.((.((.(((......))).)).)).)))))).....)).))).))).....))).)).))))).............((((.............)))).................**************************************************
Read size # Mismatch Hit Count Total Norm Total

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droEre2 scaffold_4644:616659-616909 + der_327 TAA-------------TTTTTTGTAA--TTTTTCTGATGTATG--ATGTTG----------TACAAATTCAAAAA-T----ATTA--------AA-------GAATGTCCCAATT-CTGAAGTTCTAAACTTCATAACTCAATTTATCTTAATCGGATTTTGAAGTGGCATACCTCAAAATGTTTCTGGCGCAATT-----------CTCTAAAATTTT-----TAAA----------------TGTT----------------A-------------------ACTTATCATCTGCAT----------------------ATATTCC-CATTTTCCAGCTGCA--------CTACAATGGCGTCTTCGATTGCTTCGCCAAGATGTACCGCCACGA-------------------------------------------------
droYak3 v2_chrUn_6954:9669-9893 + TTT-------------TTTTTTTTAA--TATTTTTTTTGTATT--T-----T-AGTA----T--------TTAA--A----ATGAATGAGTAAA-G------AAATATTAA-AGA-AT---------------------ATATTTATTTAGATTTTATTTGAAA-AGTAATAGTT--------TTGTATTTTAATG-----------TTTTTTAT--------TCGTT----------------TTTTATTTGTGGT------TGGCCAACCAAACAAAATGTATT-A-----------GGAATTAAAAATTTTTAACCTATCTTTA-------------TGGACTATTTGTCTTTT----------------------------------------ATTTTTATT-----------------------------------TCCTA
droSec2 scaffold_44:161980-162118 + AAT-------------TTTTTTGTCA--TTTTTATGATGT---------------------TGGAAATTCGAAAT-A----ATTC--------AA-------AAATGTCCCAAGA-CTAAAGTTCTAAAGTCCATAACTCAACTTATATCGATCGCATTTCAAAGTGGCATACCT--------TTGTGGTTGAATC-----------CTCTAAAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
droSim2 x:7649820-7649969 + TAA-------------TTTTTTGTCA--TTTTTATGATTT---------------------TGGAAATTCGAAA--A----ATTA--------AA-------AAATGTCCCAAGA-CTGACGTTCTAAAGTCCATAACTCAACTTATATCGATCGCATTTCAAAGTGGCATATCTCAAAATGTTTGTGATTAAATT-----------TTCTAAAAATCT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
dm3 chrX:8078291-8078473 + AAT-------------TTTTTTGTCA--TTTTTATGATGT---------------------CGGAAATTCGAAAA-A----GTTG--------AA-------AAATGCCCCAAGA-CTGAAGTTCTGAAGTCCATAACTCAACTTATATAAATCGGAAATCAAAGTGGCATACCTCAAAATGTTTGTTGTTCATAT-----------ATCTTAAAATCTGCATTCAAATTTATAAACAACATTT--TCA------------TT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TT
droEug1 scf7180000409548:444864-445082 - CGA-------------TTTTTGTCAA--TTTGAATGATGATACATCCCTTTC-TGA----------------AA--A----ATGT------AAA-CAAGGATGAACAGCTATCTTGGCTTA-TTCCGGAGCCCATAACTTTCCTTGTGGTTCCCCGATTTTGATGTGGCATACCTCTAAAAGTTTGTAGTTTTATC-----------ATCTGAAAAACTGCATTCACA----------------GATAATTTTAAATTTCTTTTA-------------------AA-TATTTTTCCCGA----------------------TTTTTA-AGAT------------G---------------------------------------------------------------------------------------------------CA
droBia1 scf7180000301754:6032663-6032933 - AAA-------------TTTTAACTCA--TTTTCATGTTAAA----TTTTT-C---------C-AT---------AAATTCAATGG-GTTGCACAAT------GAGT-ACCCAAAA-CTGCACTTCCAAATCCCATATCTTGACTTATTGGATACCGATTTAGATGTGGGATACCTTAATACGTTTGTGGTTGAATT-----------CTCTAATAATCAACATTCAAA----------------ATTTACTTTTAAA------------------------------------------CGGGATCCGAAATTTTAACCCATTTTCA-------------TGTTTCATT-TTTTCGT----------------------------------------ATTGACAATGGTTTGCACAA----TGAGTACCCCAAAACTGCACTTCCA
droTak1 scf7180000415712:910823-911075 - TAAAGGACAGTACATTTTTTAACCCA--TTTTCATGTTCGA----TTTTC-C---------C-GA---------AATTACAATGT-TTTGCAGTAT------GGAACCTCTAAAA-CTGAATTTCAAGATTCCATAGCTTTTGTAATTCTAAACCGATTTTGAAGTGGCATACCCCTATGAGTTTGTGGTAAAATT-----------CTCGAATAACTTGCTTTTAAA----------------TATTTCTTAAAAT------------------------------------------CGACAGTGCATTTTTTAACCC-TTTTCA-------------TGTTATAAT-ATTTCGC----------------------------------------ATTTTCAAT-----------------------------------GGTTT
droEle1 scf7180000491249:1556769-1556983 - CGA-------------TTTTTTGCAA--TTTTAATGATGTAAC--CCCTTTT-AAAATTTCC--------GAAA--AAGTCGTG--TTTGCAGAA-------AATTGACCAAAAACCTGCAGTT-CTAAATCCATAACTTTTCTTTCCCACATCCGATTTAAAAGAAGTATATCTTCAAAGTCTTGTGGCTTAAGC-----------CTCTTAAAACTTGCATTTAAA----------------TTGTT------------TTTA-------------------AATTATGATTTCTTT----------------------TTTTTA-CGAT----------------------------------------------------------------------------------------------------------------TT
droRho1 scf7180000779488:956912-957177 - CGA-------------TTTTTCATCA--TTTTGACAGTGTTAC--CCCTTTC-CGAATTTGC--------GAAA--A----ATGGCTTTGCAGAA-------AAGTGACCTAAAACCTGTACT-TCTAAGCCCATAACTTTTTTTACAGACATCCGATTCCAAAGCGGCATACCTCTAAATAATTGTGGTTTAATT-----------CACTAAAATTCTGTGTTTAAA----------------TCTTGTTT--AGTTATTTTGG-------------------GT-AGATTTTTCTCA----------------------TTTTTA-TGAT------------GCG---------AATGGCACC-----------------------------------------------CATTTTGTTCGAGTGCCACACTCATCCGCTCCGC
droFic1 scf7180000454106:1686972-1687207 + AAC-------------AATTTTATGA--TGTTACCCCTGT-----------C--AAATAT-C--------GTAA--A----ATGGTTTTACGTGA-------AAATGTCAAAAAATCAGGATT-TCTGTGCCAATATCCTTTTTAAATAAAGTCGGATTTCGAAGTGGCCTACCTCTAAGAGCTTGTGTTTTAATT-----------CTCTAGAAATATTTAATGATTTCGGTTGAAAACC---------------------------------------------------------------------------------------------------TGCA--------CTCACCTGG------TGGTGGGTTCGTCCAGGAGGGCCACCAGGAACTGCCAGA-----------------------------------GCTGC
droKik1 scf7180000302469:1912819-1912881 - TAT-------------CCTCCCACAG--C-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCA--------CTACAATGGCGTCTTTGATTGCTTCGCCAAGATGTACCGGCACGA-------------------------------------------------
droAna3 scaffold_5967:602-823 + AGA-------------TTTTTTGTCAA-ATTTCCTGGTGGAT---CCCCTCC-AAAATGT-T--------GGAA--A----ACGC--------AG-------GAGTGCCCGATATGACCCACT-GCCAAGGCTATATCTTTTCCAAAAATCATCCGATTCTCTAGCGGAATACCTTAAACGATTTGTAGATCGATT-----------CTCCGTCATTCTGCAATATCTTTGCCAAAAATCATCC--GAT-TCTCTAG------------------------------------------CGG-----------------------------------------A--ATACGATTT----------TTAGATCGATTC------------------------------------------------------------------TCC
droBip1 scf7180000396741:1003688-1003904 + TAA-------------TTTTTTGTCTAATTTTCTCGAAGGA----CCCTT-TCAAAATTC-T--------GAAG--A----ATGC--------TT-------GAAAACCCCAATA-TCACCCCAGATATTGTCATATCTTTTTCAATAATCATCCGATCCTTAAGCAGAATACCTTTAAATATTTGTAGATCATTT-----------CTCTTGCATTCTGCATGAAAA----------------TCTAACA-----------------------------------------------------------------GCTT-ATTTTTT-TAGTTTTTTGTTACA--------TTTTTAAACCGTC------------------------------------------------------------------------------TTC
dp5 XL_group1e:152619-152687 + CTT-------------ATCATCTTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTTCAGGTACA--------CTACAATGGCGTCTTCGACTGCTTCTCAAAGATGTATCGACAGGA-------------------------------------------------
droPer2 scaffold_60:179637-179694 - TCT-------------TTCAGG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TACA--------CTACAATGGCGTCTTCGACTGCTTCTCAAAGATGTATCGACAGGA-------------------------------------------------
droWil2 scf2_1100000008096:1744-1835 + TAA-------------TTTTGTGTAA--TCTCTCTCAC-----------------GATATTCGGAAATT---------------C--------------------------------------------------------------------------------------------------TCGCATTCAAGATATTCTAAAATCTGTTAAAAATGTACAACAAAA----------------TTTCC------------TT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TA
droVir3 scaffold_12970:1296898-1296955 - TTT-------------CG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGGTGCA--------CTACACTGGCGTGTTTGACTGCTTTGCGAAGATGTACCGGCAGGA-------------------------------------------------
droMoj3 scaffold_6359:2483289-2483341 - CAG-------------G-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCA--------CTACTCTGGCGTGTTTGACTGCTTCGCCAAGATGTACCGTCAGGA-------------------------------------------------
droGri2 scaffold_15081:1879899-1879960 - TCC-------------CATTTG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGGCGCA--------CTACAATGGCGTCTTCGACTGTTTTGCCAAGATGTATCGGCAGGA-------------------------------------------------

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droEre2
TAA-------------TTTTTTGTAA--TTTTTCTGATGTATG--ATGTTG----------TACAAATTCAAAAA-T----ATTA--------AA-------GAATGTCCCAATT-CTGAAGTTCTAAACTTCATAACTCAATTTATCTTAATCGGATTTTGAAGTGGCATACCTCAAAATGTTTCTGGCGCAATT-----------CTCTAAAATTTT-----TAAA----------------TGTT----------------A-------------------ACTTATCATCTGCAT----------------------ATATTCC-CATTTTCCAGCTGCA--------CTACAATGGCGTCTTCGATTGCTTCGCCAAGATGTACCGCCACGA-------------------------------------------------SizeHit CountTotal NormTotalM055
Female-body
M057
Embryo
V060
Head
V040
Embryo
V107
Male-body
V108
Head
GSM1528801
follicle cells
....................................................................................................................................................................................................................................................................................................................................................TGCA--------CTACAATGGCGTCTTCGATTGC........................................................................2623.0061000005
............................................................................................................................................................................................................................................................................................................................................................................CTTCGATTGCTTCGCCAAGATGTACCGC......................................................2820.5010010000
....................................................................................................................................................................................................................................................................................................................................................TGCA--------CTACAATGGCGTCTTCGATTGCTT......................................................................2820.5011000000
.............................................................................................................................................................................................................................................................................................................................................................................TTCGATTGCTTCGCCAAGATGTA..........................................................2320.5011000000
...........................................................................................................................................................................................................................................................................................................................................................................TCTTCGATTGCTTCGCCAAGATGTACC........................................................2720.5011000000
.....................................................................................................................................................................................................................................................................................................................................................GCA--------CTACAATGGCGTCTTCGAT...........................................................................2220.5010000100
...............................................................................................................................................................................................................................................................................................................................................................................CGATTGCTTCGCCAAGATGTA..........................................................2120.5010000100
........................................................................................................ATGTCCCAATT-CTGAAGTTCC................................................................................................................................................................................................................................................................................................................................2160.1710100000
........................................................................................................................................................TCGGATTTTGAAGTGGCATACCTCAAAA..........................................................................................................................................................................................................................................................................28200.1022000000
........................................................................................................................................................TCGGATTTTGAAGTGGCATACCTCAT............................................................................................................................................................................................................................................................................26200.0510000100
..........................................................................................................................................................................TACCTCAAAATGTTTCTGGCGCAATT-----------CTC............................................................................................................................................................................................................................................29200.0511000000
droYak3
TTT-------------TTTTTTTTAA--TATTTTTTTTGTATT--T-----T-AGTA----T--------TTAA--A----ATGAATGAGTAAA-G------AAATATTAA-AGA-AT---------------------ATATTTATTTAGATTTTATTTGAAA-AGTAATAGTT--------TTGTATTTTAATG-----------TTTTTTAT--------TCGTT----------------TTTTATTTGTGGT------TGGCCAACCAAACAAAATGTATT-A-----------GGAATTAAAAATTTTTAACCTATCTTTA-------------TGGACTATTTGTCTTTT----------------------------------------ATTTTTATT-----------------------------------TCCTASizeHit CountTotal NormTotalM026
Head
M043
Female-body
M056
Embryo
V046
Embryo
V052
Head
V058
Head
V120
Male-body
SRR1275488
Male larvae
SRR1275486
Male prepupae
SRR1275484
Male prepupae
GSM1528802
follicle cells
...........................................................................................................................................................................................................................................................TGTGGT------TGGCCAACCAAACAAAATG....................................................................................................................................................................2590.78707000000000
.............................................................................................................................................................TTTGAAA-AGTAATAGTT--------TTGT...................................................................................................................................................................................................................................................................2140.25101000000000
.........................................................................................................................................................................................................................................................TTTGTGGT------TGGCCAACCAAACAAAATG....................................................................................................................................................................2790.22202000000000
..........................................................................................................................................................................................................................................................TTGTGGT------TGGCCAACCAAACAAAATG....................................................................................................................................................................2690.22202000000000
.........................................................................................................................................................................................................................................................................GCCAACCAAACAAAATGTATT-A-----------GGAAT..............................................................................................................................................2750.20101000000000
...............................................................................................................................................................................................................................................................................CAAACAAAATGTATT-A-----------GGAAT..............................................................................................................................................2150.20101000000000
.....................................................................................................................................................................................................................................................TTTATTTGTGGT------TGGCCAACCAAACA.........................................................................................................................................................................26130.15202000000000
....................................................................................................................................................................................................................................................TTTTATTTGTGGT------TGGCCAACCAAA...........................................................................................................................................................................25130.15202000000000
...................................................................................................................................................................................................................................T----------------TTTTATTTGTGGT------TGGCCAACCAAA...........................................................................................................................................................................26130.15202000000000
.......................................TATT--T-----T-AGTA----T--------TTAA--A----ATGAATGAGT...................................................................................................................................................................................................................................................................................................................................................................2670.14100000000001
.............................................................T--------TTAA--A----ATGAATGAGTAAA-G------AAA.....................................................................................................................................................................................................................................................................................................................................................2390.11100000010000
.................................................................................................................................................................................................................................GTT----------------TTTTATTTGTGGT------TGGC...................................................................................................................................................................................20100.10101000000000
.......................................................................TAA--A----ATGAATGAGTAAA-G------AAATATT.................................................................................................................................................................................................................................................................................................................................................25100.10101000000000
.......................................................................TAA--A----ATGAATGAGTAAA-G------AAATATTAA-A.............................................................................................................................................................................................................................................................................................................................................28100.10101000000000
.......................................................TA----T--------TTAA--A----ATGAATGAGTAAA-...............................................................................................................................................................................................................................................................................................................................................................21110.09101000000000
.........................................................................A--A----ATGAATGAGTAAA-G------AAATA...................................................................................................................................................................................................................................................................................................................................................21110.09100000010000
.................................................................................ATGAATGAGTAAA-G------AAATATT.................................................................................................................................................................................................................................................................................................................................................21110.09101000000000
....................................................................................................................................................................................................................................................TTTTATTTGTGGT------TGGCCAACCAAACAA........................................................................................................................................................................28120.08101000000000
.............................................................................................................................................................................................................................................................TGGT------TGGCCAACCAAACAAAATGTAT.................................................................................................................................................................26120.08101000000000
................................................................................................................................................................................................................................................................T------TGGCCAACCAAACAAAATGT...................................................................................................................................................................21120.08101000000000
......................................................................................................................................................................................................................................................TTATTTGTGGT------TGGCCAACCA.............................................................................................................................................................................21140.07101000000000
.....................................................................................................................................................................................................................................................................................................................ATTTTTAACCTATCTTTA-------------TGG.......................................................................................................21140.07101000000000
....................................................................................................................................................................................................................................................TTTTATTTGTGGT------TGGCCAAC...............................................................................................................................................................................21140.07101000000000
....................................................................................................................................................................................................................................................TTTTATTTGTGGT------TGGCCAA................................................................................................................................................................................20140.07101000000000
......................................................................................TGAGTAAA-G------AAATATTAA-AGA-AT---------------------ATATT..............................................................................................................................................................................................................................................................................................................28150.07101000000000
.......................................................................................GAGTAAA-G------AAATATTAA-AG............................................................................................................................................................................................................................................................................................................................................19150.07101000000000
.......................................................................................................................................................................................................................................................TATTTGTGGT------TGGCCAACC..............................................................................................................................................................................19150.07101000000000
......................................................................................TGAGTAAA-G------AAATATTAA-AGA-AT---------------------ATAT...............................................................................................................................................................................................................................................................................................................27150.07101000000000
........................................................................................................................................................................................................................................................ATTTGTGGT------TGGCCAACCAAA...........................................................................................................................................................................21150.07101000000000
....................................................................................AATGAGTAAA-G------AAATATTA................................................................................................................................................................................................................................................................................................................................................19150.07100000010000
.........................................................................................................TATTAA-AGA-AT---------------------ATATTTATTTAGAT.....................................................................................................................................................................................................................................................................................................25180.06101000000000
droSec2
AAT-------------TTTTTTGTCA--TTTTTATGATGT---------------------TGGAAATTCGAAAT-A----ATTC--------AA-------AAATGTCCCAAGA-CTAAAGTTCTAAAGTCCATAACTCAACTTATATCGATCGCATTTCAAAGTGGCATACCT--------TTGTGGTTGAATC-----------CTCTAAAA---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM054
Female-body
V113
Male-body
V114
Embryo
V115
Head
No Reads
droSim2
TAA-------------TTTTTTGTCA--TTTTTATGATTT---------------------TGGAAATTCGAAA--A----ATTA--------AA-------AAATGTCCCAAGA-CTGACGTTCTAAAGTCCATAACTCAACTTATATCGATCGCATTTCAAAGTGGCATATCTCAAAATGTTTGTGATTAAATT-----------TTCTAAAAATCT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------SizeHit CountTotal NormTotalM023
Head
M024
Male-body
M025
Embryo
M053
Female-body
O001
Testis
O002
Head
SRR553485
Ovary
SRR553486
Ovary
SRR553487
Ovary
SRR553488
Ovary
SRR618934
Ovary
V044
Embryo
SRR902008
Ovary
SRR902009
Testis
SRR1275487
Male larvae
SRR1275485
Male prepupae
SRR1275483
Male prepupae
...................................................................................................................................CCATAACTCAACTTATATCGATCGC..................................................................................................................................................................................................................................................................................................2531.00300000000300000000
...................................................................................................................................CCATAACTCAACTTATATCGATCGCT.................................................................................................................................................................................................................................................................................................2630.67200000000200000000
.......................................................................................................................................................................GCATATCTCAAAATGTTT.....................................................................................................................................................................................................................................................................1870.14100000000001000000
dm3
AAT-------------TTTTTTGTCA--TTTTTATGATGT---------------------CGGAAATTCGAAAA-A----GTTG--------AA-------AAATGCCCCAAGA-CTGAAGTTCTGAAGTCCATAACTCAACTTATATAAATCGGAAATCAAAGTGGCATACCTCAAAATGTTTGTTGTTCATAT-----------ATCTTAAAATCTGCATTCAAATTTATAAACAACATTT--TCA------------TT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TTSizeHit CountTotal NormTotalGSM154618
Ovary
GSM154620
Ovary
GSM154621
Ovary
GSM154622
Ovary
GSM180328
Head
GSM180329
Mixed-body
GSM180330
Embryo
GSM180331
Embryo
GSM180332
Embryo
GSM180333
Embryo
GSM180334
Larvae
GSM180335
Disc
GSM180336
Pupae
GSM180337
S2
GSM231091
Ovary
GSM239041
Head
GSM239050
Head
GSM239051
S2
GSM239052
S2
GSM246084
Head
GSM266765
S2
GSM280082
Ovary
GSM280083
Ovary
GSM280084
Ovary
GSM280085
Testis
GSM280086
Ovary
GSM280087
S2-NP
GSM280088
S2-NP
GSM312995
Head
GSM313160
Head
GSM313161
Head
GSM313162
Head
GSM313163
Head
GSM313164
Head
GSM313165
Head
GSM343287
Embryo
GSM379050
Ovary
GSM379051
Ovary
GSM379052
Ovary
GSM379053
Ovary
GSM379054
Ovary
GSM379055
Ovary
GSM379056
Ovary
GSM379057
Ovary
GSM379058
Ovary
GSM379059
Ovary
GSM379060
Ovary
GSM379061
Ovary
GSM379062
Ovary
GSM379063
Ovary
GSM379064
Ovary
GSM379065
Ovary
GSM379066
Ovary
GSM379067
Ovary
GSM424739
S2
GSM424740
S2
GSM424741
S2
GSM467729
Female-body
GSM467730
Female-body
GSM467731
Female-body
M002
CS
M003
Male-body
M004
Male-body
M005
ML-DmD32
M006
ML-DmD32
M029
OSC
M030
OSC
M031
OSC
M032
S2-R+
M033
S2-R+
M034
S2-R+
M035
S2-R+
M036
S2-R+
M037
S2-R+
M038
S2-R+
M039
S2-R+
M048
S2-R+
OSS2
OSS
OSS6
OSS
OSS7
OSS
OSS8
OSS
S1
Head
S10
Embryo
S11
Embryo
S12
Embryo
S13
Embryo
S14
Embryo
S15
S2-GMR
S16
Kc
S17
Larvae
S18
Larvae
S19
Pupae
S2
Head
S20
Pupae
S21
Disc
S22
Head
S23
Female-body
S24
Male-body
S25
Larvae
S26
Larvae
S27
Pupae
S28
Pupae
S29
Head
S3
Male-body
S30
S2-GMR
S31
S2
S32
S2
S33
Kc
S34
Kc
S35
Kc
S4
Female-body
S5
Disc
S6
Embryo
S7
Embryo
S8
S2
S9
Embryo
SRR001337
Head
SRR001338
Head
SRR001339
Head
SRR001340
Head
SRR001341
Head
SRR001342
Head
SRR001343
Head
SRR001344
Head
SRR001345
Head
SRR001346
Head
SRR001347
Head
SRR001348
Head
SRR001349
Head
SRR001664
Head
SRR010951
Ovary
SRR010952
Ovary
SRR010953
Ovary
SRR010954
Ovary
SRR010955
Ovary
SRR010956
Ovary
SRR010957
Ovary
SRR010958
Ovary
SRR010959
Ovary
SRR010960
Ovary
SRR014268
Embryo
SRR014269
Embryo
SRR014270
Embryo
SRR014271
Embryo
SRR014272
Embryo
SRR014273
Ovary
SRR014274
Ovary
SRR014275
Ovary
SRR014276
Ovary
SRR014277
Ovary
SRR014278
Ovary
SRR014279
Ovary
SRR014280
Ovary
SRR014281
Ovary
SRR014282
Ovary
SRR023197
S2
SRR023399
S2
SRR023400
S2
SRR023402
S2
SRR023407
S2
SRR029028
S2
SRR029029
S2
SRR029030
S2
SRR029031
S2
SRR029032
S2
SRR029033
S2
SRR029608
Head
SRR029633
Head
SRR030145
gb3
SRR031692
Head
SRR031693
Head
SRR031694
Head
SRR031696
Head
SRR031697
Head
SRR031698
Head
SRR031699
Head
SRR031700
Head
SRR031701
Head
SRR031702
Head
SRR031703
Head
SRR031704
Head
SRR032092
S2
SRR032093
S2
SRR032094
S2
SRR032095
S2-NP
SRR032096
S2-NP
SRR032152
Head
SRR060643
Testis
SRR060644
Ovary
SRR060645
Testis
SRR060646
Ovary
SRR060647
Ovary
SRR060648
Ovary
SRR060649
Ovary
SRR060650
Testis
SRR060651
Ovary
SRR060652
Testis
SRR060653
Ovary
SRR065151
Ovary
SRR065152
Ovary
SRR065153
Ovary
SRR065154
Ovary
SRR065155
Ovary
SRR065800
Ovary
SRR065801
Ovary
SRR065802
Ovary
SRR065803
Ovary
SRR065804
Ovary
SRR065805
Ovary
SRR065806
Ovary
SRR065807
Ovary
SRR097865
S2-NP
SRR097866
S2-NP
SRR097867
S2-NP
SRR298536
Ovary
SRR298537
Ovary
SRR298711
Ovary
SRR298712
Ovary
SRR317110
Ovary
SRR317111
Ovary
SRR317112
Ovary
SRR317113
Ovary
SRR317114
Ovary
SRR317115
Ovary
SRR317116
Ovary
SRR317117
Ovary
SRR341115
S2
SRR341116
S2
SRR341117
S2
SRR341118
S2
SRR351332
Mixed-body
SRR351333
Mixed-body
T004
OSC
T005
CME-L1
V001
Embryo
V002
Embryo
V003
S2
V006
Female-body
V007
Head
V008
S2
V009
CME-L1
V010
ML-DmD20-C5
V011
Sg4
V012
Male-body
V013
Head
V014
DTT
V015
DreRFHV
V018
Kc167
V019
GM2
V020
S2-R+
V021
ML-DmD21
V022
ML-DmD32
V023
Head
V024
Kc167
V025
S2-R+
V026
1182-2H
V027
ML-DmD21
V028
CME-W1-Cl.8+
V029
ML-DmD9
V030
ML-DmD8
V031
GM2
V032
S1
V033
CME-W1-Cl.8+
V034
ML-DmD16-C3
V035
ML-DmD32
V036
ML-DmD20-C5
V037
S2
V038
S2
V063
Ovary
V0632
Ovary
V064
Ovary
V0642
Ovary
V065
Ovary
V0652
Ovary
V066
Ovary
V0662
Ovary
V067
S2-NP
V073
mbn2
V074
S3
V075
ML-DmBG1-C1
V076
ML-DmBG3-C2
V077
Head
V078
Head
V079
Head
V080
Head
V081
Embryo
V082
Embryo
V083
Male-body
V084
Female-body
V085
CME-W2
V086
Female-body
V088
Ovary
V0882
Ovary
V089
Ovary
V0892
Ovary
V090
Male-body
V091
fGS/OSS
V092
Male-body
V093
Male-body
V094
S2-R+
V095
S2-R+
V096
Ovary
V097
Ovary
V098
Ovary
V125
ML-DmD9
V126
CME-L1
V127
G2
V128
S3
V129
ML-DmBG1-C1
V130
ML-DmBG3-C2
V131
ML-DmD16-C3
V132
ML-DmD32
V133
Sg4
V134
ML-DmD8
V135
CME-W2
V136
Male-body
V137
Head
V138
Male-body
V139
Female-body
V140
Female-body
V141
Female-body
V142
Female-body
V144
OSC
V145
S2
V146
S1
V147
1182-2H
V148
mbn2
GSM1528798
follicle cells
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............................................................................A----GTTG--------AA-------AAATGCCCCAAGA-CTGA......................................................................................................................................................................................................................................................................................................................................2470.1410000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................TATGATGT---------------------CGGAAATTCGAAAA-A----GTTC--------.................................................................................................................................................................................................................................................................................................................................................................2770.1410000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
...................TTTGTCA--TTTTTATGATGT---------------------CGGA.............................................................................................................................................................................................................................................................................................................................................................................................23150.1320000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000100000000000000000000000000
....................TTGTCA--TTTTTATGATGT---------------------CGGA.............................................................................................................................................................................................................................................................................................................................................................................................22150.1320000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
..................TTTTGTCA--TTTTTATGATGT---------------------CG...............................................................................................................................................................................................................................................................................................................................................................................................22150.1320000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
...................TTTGTCA--TTTTTATGATGT---------------------CGGAAATTC........................................................................................................................................................................................................................................................................................................................................................................................28150.1320000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................TTTTTATGATGT---------------------CGGAAATTCGAAA....................................................................................................................................................................................................................................................................................................................................................................................25150.1320000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................TATGATGT---------------------CGGAAATTCGAA.....................................................................................................................................................................................................................................................................................................................................................................................20150.1320000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000100000000000000000000000000000000000
............................TTTTTATGATGT---------------------CGGAAATTCGAA.....................................................................................................................................................................................................................................................................................................................................................................................24150.1320000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000100000000000000000000000000
.....................TGTCA--TTTTTATGATGT---------------------CGGAAATTCG.......................................................................................................................................................................................................................................................................................................................................................................................27150.1320000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................TCA--TTTTTATGATGT---------------------CGGAAATTCGAA.....................................................................................................................................................................................................................................................................................................................................................................................27150.1320000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................TTATGATGT---------------------CGGAAATTCGAAAA-A----.............................................................................................................................................................................................................................................................................................................................................................................24150.1320000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................ATGATGT---------------------CGGAAATTCGAAAA-..................................................................................................................................................................................................................................................................................................................................................................................21150.1320000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
...............................TTATGATGT---------------------CGGAAATTCGAAA....................................................................................................................................................................................................................................................................................................................................................................................22150.1320000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000100000000000000000000000000000000000
.............................TTTTATGATGT---------------------CGGAAATTCGAAA....................................................................................................................................................................................................................................................................................................................................................................................24150.1320000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
....................TTGTCA--TTTTTATGATGT---------------------CGG..............................................................................................................................................................................................................................................................................................................................................................................................21150.1320000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000100000000000000000000000000000000000
............................................................................................................CCCAAGA-CTGAAGTTCTGAAGTCCA........................................................................................................................................................................................................................................................................................................................25200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................................................G--------AA-------AAATGCCCCAAGA-CTGAAGTTCT................................................................................................................................................................................................................................................................................................................................26100.1010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
............................................................................................................CCCAAGA-CTGAAGTTCTG...............................................................................................................................................................................................................................................................................................................................18200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001100000000000000000000000000000000000
.....................................................................................................................TGAAGTTCTGAAGTCCATAA.....................................................................................................................................................................................................................................................................................................................20200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000
...............................................................................................................................................................TCAAAGTGGCATACCTCAAAATG........................................................................................................................................................................................................................................................................23200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000100000000000000000000000000
................................................................................................................................................................CAAAGTGGCATACCTCAAAATGT.......................................................................................................................................................................................................................................................................23200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000100000000000000000000000000
......................................................................................................AAATGCCCCAAGA-CTGAAGTT..................................................................................................................................................................................................................................................................................................................................21200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000
...............................................................................................................................................................TCAAAGTGGCATACCTCAAAATGTTTG....................................................................................................................................................................................................................................................................27200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
......................................................................................................AAATGCCCCAAGA-CTGAAGTTCTGA..............................................................................................................................................................................................................................................................................................................................25200.1020000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
.........................................................................................................TGCCCCAAGA-CTGAAGTTCTGAAGT...........................................................................................................................................................................................................................................................................................................................25200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................................................................................................AAATGCCCCAAGA-CTGAAGTTCTGAA.............................................................................................................................................................................................................................................................................................................................26200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000
..................................................................................................................................................................AAGTGGCATACCTCAAAATGTTTGT...................................................................................................................................................................................................................................................................25200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000000000000000000000000
..........................................................................................................GCCCCAAGA-CTGAAGTTCTG...............................................................................................................................................................................................................................................................................................................................20200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000110000000000000000000000000000000000000000000000000000
..................................................................................TTG--------AA-------AAATGCCCCAAGA-CTGAAGTTCT................................................................................................................................................................................................................................................................................................................................28100.1010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................AAGTGGCATACCTCAAAATG........................................................................................................................................................................................................................................................................20200.1020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000
...................................................................................TG--------AA-------AAATGCCCCAAGA-CTGAAGTTCT................................................................................................................................................................................................................................................................................................................................27100.1010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................TTTTTGTCA--TTTTTATGATGT---------------------CGGAAA...........................................................................................................................................................................................................................................................................................................................................................................................27150.0710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................TATGATGT---------------------CGGAAATTCGAAAA-A----.............................................................................................................................................................................................................................................................................................................................................................................23150.0710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................TTTTGTCA--TTTTTATGATGT---------------------CGGAAA...........................................................................................................................................................................................................................................................................................................................................................................................26150.0710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................TCA--TTTTTATGATGT---------------------CGGAAATTCGAAA....................................................................................................................................................................................................................................................................................................................................................................................28150.0710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
.......................TCA--TTTTTATGATGT---------------------CGGA.............................................................................................................................................................................................................................................................................................................................................................................................19150.0710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
............................TTTTTATGATGT---------------------CGGAAATTA........................................................................................................................................................................................................................................................................................................................................................................................21150.0710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
....................TTGTCA--TTTTTATGATGT---------------------CGGAAATTC........................................................................................................................................................................................................................................................................................................................................................................................27150.0710000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................TTTTTGTCA--TTTTTATGATGT---------------------CGG..............................................................................................................................................................................................................................................................................................................................................................................................24150.0710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
..............................TTTATGATGT---------------------CGGAAATTCG.......................................................................................................................................................................................................................................................................................................................................................................................20150.0710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
.........................A--TTTTTATGATGT---------------------CGGAAATTC........................................................................................................................................................................................................................................................................................................................................................................................22150.0710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
....................TTGTCA--TTTTTATGATGT---------------------CGGAAAT..........................................................................................................................................................................................................................................................................................................................................................................................25150.0710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................A--TTTTTATGATGT---------------------CGGAA............................................................................................................................................................................................................................................................................................................................................................................................18150.0710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
.................TTTTTGTCA--TTTTTATGATGT---------------------CGGC.............................................................................................................................................................................................................................................................................................................................................................................................25150.0710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000
................................TATGATGT---------------------CGGAAATTCGA......................................................................................................................................................................................................................................................................................................................................................................................19150.0710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000
..................TTTTGTCA--TTTTTATGATGT---------------------CGGAA............................................................................................................................................................................................................................................................................................................................................................................................25150.0710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....................TGTCA--TTTTTATGATGT---------------------CGGAAATTC........................................................................................................................................................................................................................................................................................................................................................................................26150.0710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
.......................TCA--TTTTTATGATGT---------------------CGGAAATTCG.......................................................................................................................................................................................................................................................................................................................................................................................25150.0710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................TCA--TTTTTATGATGT---------------------CGGAAATTC........................................................................................................................................................................................................................................................................................................................................................................................24150.0710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
........................CA--TTTTTATGATGT---------------------CGGAAATTCGAA.....................................................................................................................................................................................................................................................................................................................................................................................26150.0710000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................TGATGT---------------------CGGAAATTCGAAAA-A----.............................................................................................................................................................................................................................................................................................................................................................................21150.0710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
.....................TGTCA--TTTTTATGATGT---------------------CGGC.............................................................................................................................................................................................................................................................................................................................................................................................21150.0710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000
..............................TTTATGATGT---------------------CGGAAATTCGAAAA-..................................................................................................................................................................................................................................................................................................................................................................................24150.0710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
.............................TTTTATGATGT---------------------CGGAAATTCGAA.....................................................................................................................................................................................................................................................................................................................................................................................23150.0710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000
.............................TTTTATGATGT---------------------CGGAAAT..........................................................................................................................................................................................................................................................................................................................................................................................18150.0710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................TATGATGT---------------------CGGAAATTCGAAAA-G----T............................................................................................................................................................................................................................................................................................................................................................................24150.0710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................TTTTTGTCA--TTTTTATGATGT---------------------CGGAA............................................................................................................................................................................................................................................................................................................................................................................................26150.0710000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................TTTTTATGATGT---------------------CGGAAATTCGA......................................................................................................................................................................................................................................................................................................................................................................................23150.0710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................TTTTTATGATGT---------------------CGGAAATTCG.......................................................................................................................................................................................................................................................................................................................................................................................22150.0710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000
....................TTGTCA--TTTTTATGATGT---------------------CGGAAATT.........................................................................................................................................................................................................................................................................................................................................................................................26150.0710000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000
droEug1
CGA-------------TTTTTGTCAA--TTTGAATGATGATACATCCCTTTC-TGA----------------AA--A----ATGT------AAA-CAAGGATGAACAGCTATCTTGGCTTA-TTCCGGAGCCCATAACTTTCCTTGTGGTTCCCCGATTTTGATGTGGCATACCTCTAAAAGTTTGTAGTTTTATC-----------ATCTGAAAAACTGCATTCACA----------------GATAATTTTAAATTTCTTTTA-------------------AA-TATTTTTCCCGA----------------------TTTTTA-AGAT------------G---------------------------------------------------------------------------------------------------CASizeHit CountTotal NormTotal
No Reads
droBia1
AAA-------------TTTTAACTCA--TTTTCATGTTAAA----TTTTT-C---------C-AT---------AAATTCAATGG-GTTGCACAAT------GAGT-ACCCAAAA-CTGCACTTCCAAATCCCATATCTTGACTTATTGGATACCGATTTAGATGTGGGATACCTTAATACGTTTGTGGTTGAATT-----------CTCTAATAATCAACATTCAAA----------------ATTTACTTTTAAA------------------------------------------CGGGATCCGAAATTTTAACCCATTTTCA-------------TGTTTCATT-TTTTCGT----------------------------------------ATTGACAATGGTTTGCACAA----TGAGTACCCCAAAACTGCACTTCCASizeHit CountTotal NormTotal
No Reads
droTak1
TAAAGGACAGTACATTTTTTAACCCA--TTTTCATGTTCGA----TTTTC-C---------C-GA---------AATTACAATGT-TTTGCAGTAT------GGAACCTCTAAAA-CTGAATTTCAAGATTCCATAGCTTTTGTAATTCTAAACCGATTTTGAAGTGGCATACCCCTATGAGTTTGTGGTAAAATT-----------CTCGAATAACTTGCTTTTAAA----------------TATTTCTTAAAAT------------------------------------------CGACAGTGCATTTTTTAACCC-TTTTCA-------------TGTTATAAT-ATTTCGC----------------------------------------ATTTTCAAT-----------------------------------GGTTTSizeHit CountTotal NormTotal
No Reads
droEle1
CGA-------------TTTTTTGCAA--TTTTAATGATGTAAC--CCCTTTT-AAAATTTCC--------GAAA--AAGTCGTG--TTTGCAGAA-------AATTGACCAAAAACCTGCAGTT-CTAAATCCATAACTTTTCTTTCCCACATCCGATTTAAAAGAAGTATATCTTCAAAGTCTTGTGGCTTAAGC-----------CTCTTAAAACTTGCATTTAAA----------------TTGTT------------TTTA-------------------AATTATGATTTCTTT----------------------TTTTTA-CGAT----------------------------------------------------------------------------------------------------------------TTSizeHit CountTotal NormTotal
No Reads
droRho1
CGA-------------TTTTTCATCA--TTTTGACAGTGTTAC--CCCTTTC-CGAATTTGC--------GAAA--A----ATGGCTTTGCAGAA-------AAGTGACCTAAAACCTGTACT-TCTAAGCCCATAACTTTTTTTACAGACATCCGATTCCAAAGCGGCATACCTCTAAATAATTGTGGTTTAATT-----------CACTAAAATTCTGTGTTTAAA----------------TCTTGTTT--AGTTATTTTGG-------------------GT-AGATTTTTCTCA----------------------TTTTTA-TGAT------------GCG---------AATGGCACC-----------------------------------------------CATTTTGTTCGAGTGCCACACTCATCCGCTCCGCSizeHit CountTotal NormTotal
No Reads
droFic1
AAC-------------AATTTTATGA--TGTTACCCCTGT-----------C--AAATAT-C--------GTAA--A----ATGGTTTTACGTGA-------AAATGTCAAAAAATCAGGATT-TCTGTGCCAATATCCTTTTTAAATAAAGTCGGATTTCGAAGTGGCCTACCTCTAAGAGCTTGTGTTTTAATT-----------CTCTAGAAATATTTAATGATTTCGGTTGAAAACC---------------------------------------------------------------------------------------------------TGCA--------CTCACCTGG------TGGTGGGTTCGTCCAGGAGGGCCACCAGGAACTGCCAGA-----------------------------------GCTGCSizeHit CountTotal NormTotal
No Reads
droKik1
TAT-------------CCTCCCACAG--C-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TCCA--------CTACAATGGCGTCTTTGATTGCTTCGCCAAGATGTACCGGCACGA-------------------------------------------------SizeHit CountTotal NormTotal
No Reads
droAna3
AGA-------------TTTTTTGTCAA-ATTTCCTGGTGGAT---CCCCTCC-AAAATGT-T--------GGAA--A----ACGC--------AG-------GAGTGCCCGATATGACCCACT-GCCAAGGCTATATCTTTTCCAAAAATCATCCGATTCTCTAGCGGAATACCTTAAACGATTTGTAGATCGATT-----------CTCCGTCATTCTGCAATATCTTTGCCAAAAATCATCC--GAT-TCTCTAG------------------------------------------CGG-----------------------------------------A--ATACGATTT----------TTAGATCGATTC------------------------------------------------------------------TCCSizeHit CountTotal NormTotalM044
Female-body
M058
Embryo
V039
Embryo
V055
Head
V105
Male-body
V106
Head
No Reads
droBip1
TAA-------------TTTTTTGTCTAATTTTCTCGAAGGA----CCCTT-TCAAAATTC-T--------GAAG--A----ATGC--------TT-------GAAAACCCCAATA-TCACCCCAGATATTGTCATATCTTTTTCAATAATCATCCGATCCTTAAGCAGAATACCTTTAAATATTTGTAGATCATTT-----------CTCTTGCATTCTGCATGAAAA----------------TCTAACA-----------------------------------------------------------------GCTT-ATTTTTT-TAGTTTTTTGTTACA--------TTTTTAAACCGTC------------------------------------------------------------------------------TTCSizeHit CountTotal NormTotal
No Reads
dp5
CTT-------------ATCATCTTT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTTCAGGTACA--------CTACAATGGCGTCTTCGACTGCTTCTCAAAGATGTATCGACAGGA-------------------------------------------------SizeHit CountTotal NormTotalM022
Male-body
M040
Female-body
M059
Embryo
M062
Head
V043
Embryo
V051
Head
V112
Male-body
SRR902010
Ovary
SRR902011
Testis
SRR902012
CNS imaginal disc
................................................................................................................................................................................................................................................................................................................................................................CTACAATGGCGTCTTCGACTGCTT......................................................................2411.0010100000000
............................................................................................................................................................................................................................................................................................................................................................................CTTCGACTGCTTCTCAAAGATGT...........................................................2311.0010100000000
........................................................................................................................................................................................................................................................................................................................................................................GCGTCTTCGACTGCTTCTCA..................................................................2011.0010100000000
droPer2
TCT-------------TTCAGG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TACA--------CTACAATGGCGTCTTCGACTGCTTCTCAAAGATGTATCGACAGGA-------------------------------------------------SizeHit CountTotal NormTotalM021
Embryo
M042
Female-body
V042
Embryo
V050
Head
V057
Head
V111
Male-body
.........................................................................................................................................................................................................................................................................................................................................................................CGTCTTCGACTGCTTCTCAAAGAT.............................................................2412.002200000
................................................................................................................................................................................................................................................................................................................................................................CTACAATGGCGTCTTCGACTGCTT......................................................................2412.002200000
.................................................................................................................................................................................................................................................................................................................................................................TACAATGGCGTCTTCGACTGC........................................................................2112.002110000
..................................................................................................................................................................................................................................................................................................................................................................ACAATGGCGTCTTCGACT..........................................................................1811.001100000
...................AGG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TACA--------CTACAATGGCGTCTT...............................................................................2211.001001000
............................................................................................................................................................................................................................................................................................................................................................................CTTCGACTGCTTCTCAAAGATGT...........................................................2311.001100000
droWil2
TAA-------------TTTTGTGTAA--TCTCTCTCAC-----------------GATATTCGGAAATT---------------C--------------------------------------------------------------------------------------------------TCGCATTCAAGATATTCTAAAATCTGTTAAAAATGTACAACAAAA----------------TTTCC------------TT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TASizeHit CountTotal NormTotalM020
Head
M045
Female-body
V117
Male-body
V118
Embryo
V119
Head
No Reads
droVir3
TTT-------------CG------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGGTGCA--------CTACACTGGCGTGTTTGACTGCTTTGCGAAGATGTACCGGCAGGA-------------------------------------------------SizeHit CountTotal NormTotalM027
Male-body
M028
Head
M047
Female-body
M061
Embryo
SRR060654
Ovary
SRR060655
Testis
SRR060656
Ovary
SRR060657
Testis
SRR060658
Ovary
SRR060659
Testis
SRR060660
Ovary
SRR060661
Embryo
SRR060662
Embryo
SRR060663
Embryo
SRR060664
Male-body
SRR060665
Female-body
SRR060666
Male-body
SRR060667
Female-body
SRR060668
Male-body
SRR060669
Female-body
SRR060670
Testis
SRR060671
Male-body
SRR060672
Female-body
SRR060673
Ovary
SRR060674
Ovary
SRR060675
Ovary
SRR060676
Ovary
SRR060677
Ovary
SRR060678
Testis
SRR060679
Testis
SRR060680
Testis
SRR060681
Testis
SRR060682
Embryo
SRR060683
Testis
SRR060684
Embryo
SRR060685
Embryo
SRR060686
Embryo
SRR060687
Embryo
SRR060688
Ovary
SRR060689
Testis
SRR1106712
embryo_0-2h
SRR1106713
embryo_0-2h
SRR1106714
embryo_2-4h
SRR1106715
embryo_4-6h
SRR1106716
embryo_4-6h
SRR1106717
embryo_6-8h
SRR1106718
embryo_6-8h
SRR1106719
embryo_8-10h
SRR1106720
embryo_8-10h
SRR1106721
embryo_10-12h
SRR1106722
embryo_10-12h
SRR1106723
embryo_12-14h
SRR1106724
embryo_12-14h
SRR1106725
embryo_14-16h
SRR1106726
embryo_14-16h
SRR1106727
larvae
SRR1106728
larvae
SRR1106729
mixed whole adult body
SRR1106730
embryo_16-30h
V047
Embryo
V053
Head
V116
Male-body
GSM1528803
follicle cells
................................................................................................................................................................................................................................................................................................................................................................................GACTGCTTTGCGAAGATGTAC.........................................................2113.003000003000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................GTTTGACTGCTTTGCGAAGATG............................................................2211.001001000000000000000000000000000000000000000000000000000000000000
..................................................................................................................................................................................................................................................................................................................................................................ACACTGGCGTGTTTGACTGC........................................................................2011.001000000000000001000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................GTTTGACTGCTTTGCGAAGATGTACC........................................................2611.001000000000000000000000000000001000000000000000000000000000000000
......................................................................................................................................................................................................................................................................................................................................................CA--------CTACACTGGCGTGTTTGACT..........................................................................2211.001000000000000000000000000000000000000000000000000000000000000010
.............................................................................................................................................................................................................................................................................................................................................................................TTTGACTGCTTTGCGAAGATGTAC.........................................................2411.001001000000000000000000000000000000000000000000000000000000000000
............................................................................................................................................................................................................................................................................................................................................................................GTTTGACTGCTTTGCGAAG...............................................................1911.001000000000000000001000000000000000000000000000000000000000000000
droMoj3
CAG-------------G-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TGCA--------CTACTCTGGCGTGTTTGACTGCTTCGCCAAGATGTACCGTCAGGA-------------------------------------------------SizeHit CountTotal NormTotalM046
Female-body
V041
Embryo
V049
Head
V056
Head
M060
Embryo
V110
Male-body
................................................................................................................................................................................................................................................................................................................................................................CTACTCTGGCGTGTTTGAC...........................................................................1911.001000001
droGri2
TCC-------------CATTTG--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CAGGCGCA--------CTACAATGGCGTCTTCGACTGTTTTGCCAAGATGTATCGGCAGGA-------------------------------------------------SizeHit CountTotal NormTotalM041
Female-body
V109
Male-body
No Reads

Generated: 05/17/2015 at 10:10 PM