ID:

der_32

 Coordinate:

scaffold_4820:5353904-5353963 +

 Confidence:

Known Ortholog

 Class:

Mirtron

 Genomic Locale:

intron

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-19.0 -18.8 -18.6

Flybase annnotation

intron [Dere\GG12170-in]; utr3 [utr3_minus_8883]; CDS [Dere\GG12170-cds]; CDS [Dere\GG12170-cds]

No Repeatable elements found

Sense Strand Reads

GGTAGTAGCGTTTGTCTATTTGACAGTAAAGCCACAAATCCAAAAGAACGGTGGGTAAATCTTTGATTAGTATTGGTTTCAATATATTAGTCAAATGTTTTTCCCACTAGATTTATCAATCTTGGCAATGTACAAACGCATCCGGTGGTGGAAAATGGGC

**************************************************(((((.((((.((((((((((((((....))))))..)))))))).))))..)))))...************************************************** 		Read size # Mismatch Hit Count Total Norm Total M055

female body

 V108

head

 V107

male body		 M057

embryo

 V060

head

 GSM1528801

follicle cells		 V040

embryo
......................................................................................TTAGTCAAATGTTTTTCCCACTAG.................................................. 24 0 1 10902.00 10902 8677 1200 351 189 174 215 96
......................................................................................TTAGTCAAATGTTTTTCCCACT.................................................... 22 0 1 2375.00 2375 927 1127 153 61 94 0 13
......................................................................................TTAGTCAAATGTTTTTCCCACTA................................................... 23 0 1 1263.00 1263 844 258 69 33 32 13 14
.......................................................................................TAGTCAAATGTTTTTCCCACTAG.................................................. 23 0 1 672.00 672 669 3 0 0 0 0 0
..................................................GTGGGTAAATCTTTGATTAGTA........................................................................................ 22 0 1 558.00 558 58 397 81 4 8 0 10
......................................................................................TTAGTCAAATGTTTTTCCCACTAGT................................................. 25 1 1 316.00 316 95 75 109 2 4 30 1
......................................................................................TTAGTCAAATGTTTTTCCCACTAGA................................................. 25 0 1 135.00 135 109 16 3 5 0 1 1
.......................................................................................TAGTCAAATGTTTTTCCCACT.................................................... 21 0 1 90.00 90 87 2 0 1 0 0 0
......................................................................................TTAGTCCAATGTTTTTCCCACTAG.................................................. 24 1 1 70.00 70 70 0 0 0 0 0 0
.......................................................................................TAGTCAAATGTTTTTCCCACTA................................................... 22 0 1 69.00 69 68 1 0 0 0 0 0
......................................................................................TTAGCCAAATGTTTTTCCCACTAG.................................................. 24 1 1 62.00 62 58 3 0 0 0 1 0
......................................................................................TTAGTCAAATGTTTTTCCCACTAT.................................................. 24 1 1 60.00 60 41 6 1 0 5 0 7
......................................................................................TTAGTCAAATGTTTTTCCCAC..................................................... 21 0 1 59.00 59 35 15 3 6 0 0 0
........................................................................................AGTCAAATGTTTTTCCCACTAGT................................................. 23 1 1 59.00 59 6 43 3 0 7 0 0
..................................................GTGGGTAAATCTTTGATTAGT......................................................................................... 21 0 1 38.00 38 2 23 11 0 2 0 0
......................................................................................TGAGTCAAATGTTTTTCCCACTAG.................................................. 24 1 1 36.00 36 12 1 0 23 0 0 0
........................................................................................AGTCAAATGTTTTTCCCACTAG.................................................. 22 0 1 36.00 36 29 5 1 0 1 0 0
......................................................................................TTAGTCAAATGTTTTTCACACTAG.................................................. 24 1 1 35.00 35 27 8 0 0 0 0 0
......................................................................................TTAGTCAACTGTTTTTCCCACTAG.................................................. 24 1 1 33.00 33 33 0 0 0 0 0 0
......................................................................................TTAGTCAAATGCTTTTCCCACTAG.................................................. 24 1 1 26.00 26 17 4 1 2 0 0 2
.....................................................................................CTTAGTCAAATGTTTTTCCCACTAG.................................................. 25 1 1 24.00 24 22 2 0 0 0 0 0
......................................................................................TTAGTCAAATGTTTTTCCAACT.................................................... 22 1 1 24.00 24 0 22 1 0 1 0 0
......................................................................................TTAGTCAAATGTTTTTCCCA...................................................... 20 0 1 24.00 24 7 9 5 0 1 1 1
......................................................................................TTAGTCAAATGTTGTTCCCACTAG.................................................. 24 1 1 21.00 21 7 0 0 0 0 14 0
......................................................................................TTAGTCAAATGTTTTTCCAACTAG.................................................. 24 1 1 21.00 21 0 19 1 0 0 1 0
......................................................................................TTAGTCAAATTTTTTTCCCACTAG.................................................. 24 1 1 20.00 20 13 6 0 0 0 1 0
......................................................................................TTAGTCAAATGTTTTTCCCACTAA.................................................. 24 1 1 18.00 18 13 3 0 0 2 0 0
......................................................................................TTAGTCAAATGTTTTTCCCAGTAG.................................................. 24 1 1 17.00 17 17 0 0 0 0 0 0
......................................................................................TTAGTCAAATGTTTTTCCCACC.................................................... 22 1 1 16.00 16 1 0 0 14 1 0 0
......................................................................................TTGGTCAAATGTTTTTCCCACTAG.................................................. 24 1 1 16.00 16 11 4 0 0 1 0 0
......................................................................................GTAGTCAAATGTTTTTCCCACTAG.................................................. 24 1 1 15.00 15 12 1 0 2 0 0 0
..................................................GTTGGTAAATCTTTGATTAGTA........................................................................................ 22 1 1 14.00 14 1 13 0 0 0 0 0
......................................................................................TTAGTCAAATGTTTTTCCCACTCG.................................................. 24 1 1 14.00 14 0 12 0 0 2 0 0
......................................................................................TGAGTCAAATGTTTTTCCCACT.................................................... 22 1 1 14.00 14 1 0 1 11 1 0 0
......................................................................................TTAGTAAAATGTTTTTCCCACTAG.................................................. 24 1 1 14.00 14 2 9 0 0 1 2 0
......................................................................................TTAGTTAAATGTTTTTCCCACTAG.................................................. 24 1 1 14.00 14 14 0 0 0 0 0 0
..........................................................................................TCAAATGTTTTTCCCACTAG.................................................. 20 0 1 13.00 13 5 0 1 0 0 7 0
......................................................................................TTAGTCAAATGTTTTTCCCACTTG.................................................. 24 1 1 13.00 13 2 10 0 0 1 0 0
.....................................................................................GTTAGTCAAATGTTTTTCCCACTAG.................................................. 25 1 1 12.00 12 12 0 0 0 0 0 0
......................................................................................ATAGTCAAATGTTTTTCCCACTAG.................................................. 24 1 1 12.00 12 12 0 0 0 0 0 0
......................................................................................TTAGTCAAATGGTTTTCCCACTAG.................................................. 24 1 1 12.00 12 11 0 0 0 1 0 0
......................................................................................TTAGTCAAATGTTTTTCACACT.................................................... 22 1 1 11.00 11 0 10 1 0 0 0 0
......................................................................................TTAGTCAAATGTTTTTCCCACTT................................................... 23 1 1 11.00 11 7 2 1 1 0 0 0
......................................................................................TTAGTCAAATGTTTTTCCCACTAC.................................................. 24 1 1 10.00 10 5 1 0 3 1 0 0
......................................................................................TTAGTCAAATGTTTTTCCCCCTAG.................................................. 24 1 1 10.00 10 3 1 0 0 2 3 1
......................................................................................TTAGTAAAATGTTTTTCCCACT.................................................... 22 1 1 10.00 10 0 10 0 0 0 0 0
......................................................................................TTACTCAAATGTTTTTCCCACTAG.................................................. 24 1 1 10.00 10 8 2 0 0 0 0 0
.....................................................................................ATTAGTCAAATGTTTTTCCCACTAG.................................................. 25 0 1 10.00 10 10 0 0 0 0 0 0
......................................................................................TTAGTCAAATGTTTTTCCCACTGG.................................................. 24 1 1 9.00 9 5 4 0 0 0 0 0
......................................................................................TTAGTCAAATGTTTTTCCCGCTAG.................................................. 24 1 1 9.00 9 7 2 0 0 0 0 0
......................................................................................TTAGTCAAATGTTTTTCCCACTAAA................................................. 25 1 1 9.00 9 9 0 0 0 0 0 0
.......................................................................................TAGTCAAATGTTTTTCCCACTAGT................................................. 24 1 1 9.00 9 9 0 0 0 0 0 0
......................................................................................TTAGTCAAATGATTTTCCCACTAG.................................................. 24 1 1 9.00 9 7 1 0 1 0 0 0
......................................................................................TTAGTCAAATGTTTTACCCACTAG.................................................. 24 1 1 9.00 9 6 2 0 1 0 0 0
......................................................................................TTAGCCAAATGTTTTTCCCACTA................................................... 23 1 1 8.00 8 7 1 0 0 0 0 0
......................................................................................CTAGTCAAATGTTTTTCCCACTAG.................................................. 24 1 1 8.00 8 8 0 0 0 0 0 0
......................................................................................TTATTCAAATGTTTTTCCCACTAG.................................................. 24 1 1 8.00 8 3 4 0 1 0 0 0
......................................................................................TTAGTCAAATGTTTTTCCCAAT.................................................... 22 1 1 7.00 7 0 7 0 0 0 0 0
......................................................................................TTAGTCACATGTTTTTCCCACTAG.................................................. 24 1 1 7.00 7 3 1 0 2 0 1 0
......................................................................................TTAGTCCAATGTTTTTCCCACT.................................................... 22 1 1 7.00 7 6 1 0 0 0 0 0
.........................................................................................GTCAAATGTTTTTCCCACTAG.................................................. 21 0 1 7.00 7 6 1 0 0 0 0 0
.......................................................................................TAGTCAAATGTTTTTCCCACTAGA................................................. 24 0 1 7.00 7 7 0 0 0 0 0 0
......................................................................................TCAGTCAAATGTTTTTCCCACTAG.................................................. 24 1 1 7.00 7 4 1 1 1 0 0 0
.....................................................................................TTTAGTCAAATGTTTTTCCCACTAG.................................................. 25 1 1 7.00 7 7 0 0 0 0 0 0
......................................................................................TTAGTCAAATGTTTTTCCCACTAGC................................................. 25 1 1 7.00 7 5 2 0 0 0 0 0
......................................................................................TTAGCCAAATGTTTTTCCCACT.................................................... 22 1 1 7.00 7 5 2 0 0 0 0 0
......................................................................................TTAGTCAAATGTTTTCCCCACTAG.................................................. 24 1 1 7.00 7 3 2 0 1 0 0 1
......................................................................................TTAGGCAAATGTTTTTCCCACTAG.................................................. 24 1 1 7.00 7 5 0 0 0 1 0 1
......................................................................................TTAGTCAAATGTTCTTCCCACTAG.................................................. 24 1 1 7.00 7 4 2 0 0 0 0 1
......................................................................................TTAGTCAAATGCTTTTCCCACT.................................................... 22 1 1 6.00 6 2 3 0 1 0 0 0
......................................................................................TTAGTCAAATGTTTTTCCGACTAG.................................................. 24 1 1 6.00 6 6 0 0 0 0 0 0
......................................................................................TTAGTCAAATGCTTTTCCCACTA................................................... 23 1 1 6.00 6 3 3 0 0 0 0 0
......................................................................................TTAGTCAAATGTTTTTCCAACTA................................................... 23 1 1 6.00 6 0 6 0 0 0 0 0
...................................................TGGGTAAATCTTTGATTAGTA........................................................................................ 21 0 1 6.00 6 6 0 0 0 0 0 0
......................................................................................................................................AACGCATCCGGTGGTGGAAAATGGGC 26 0 1 6.00 6 0 1 5 0 0 0 0
......................................................................................TTATTCAAATGTTTTTCCCACT.................................................... 22 1 1 6.00 6 1 4 0 0 0 0 1
......................................................................................TTAGACAAATGTTTTTCCCACTAG.................................................. 24 1 1 6.00 6 6 0 0 0 0 0 0
......................................................................................TTAGTCAAATGTTTTTCCCACTAGG................................................. 25 1 1 6.00 6 5 1 0 0 0 0 0
..................................................GTGGGTAAATCTTTGATTAG.......................................................................................... 20 0 1 6.00 6 1 5 0 0 0 0 0
......................................................................................TTAGTCCAATGTTTTTCCCACTA................................................... 23 1 1 6.00 6 6 0 0 0 0 0 0
......................................................................................TTAGTCGAATGTTTTTCCCACTAG.................................................. 24 1 1 5.00 5 3 2 0 0 0 0 0
......................................................................................TTAATCAAATGTTTTTCCCACTAG.................................................. 24 1 1 5.00 5 4 1 0 0 0 0 0
.......................................................................................TAGTCACATGTTTTTCCCACTAG.................................................. 23 1 1 5.00 5 5 0 0 0 0 0 0
......................................................................................TTAGTCAGATGTTTTTCCCACTAG.................................................. 24 1 1 5.00 5 1 0 1 0 0 3 0
........................................................................................AGTCAAATGTTTTTCCCACT.................................................... 20 0 1 5.00 5 4 1 0 0 0 0 0
........................................................................................AGTCAAATGTTTTTCCCACTAGA................................................. 23 0 1 5.00 5 4 0 0 1 0 0 0
......................................................................................TTAGTCAAATGTTTTTCCCAGT.................................................... 22 1 1 5.00 5 5 0 0 0 0 0 0
......................................................................................TTAGTCAAATGTTTTGCCCACTAG.................................................. 24 1 1 5.00 5 5 0 0 0 0 0 0
........................................................................................AGTCAAATGTTTTTCCCACTA................................................... 21 0 1 5.00 5 3 2 0 0 0 0 0
......................................................................................TTAGTCAAATGTTTTTACCACT.................................................... 22 1 1 5.00 5 0 5 0 0 0 0 0
......................................................................................TTAGTCAAGTGTTTTTCCCACTAG.................................................. 24 1 1 4.00 4 1 1 2 0 0 0 0
......................................................................................TTAGTCAAATGTTTTTCCCACCAG.................................................. 24 1 1 4.00 4 4 0 0 0 0 0 0
...........................................................................................CAAATGTTTTTCCCACTAG.................................................. 19 0 1 4.00 4 3 1 0 0 0 0 0
......................................................................................TTAGTCAAATGTTTTTTCCACTAG.................................................. 24 1 1 4.00 4 4 0 0 0 0 0 0
.......................................................................................TAGTCAAATGTTTTTCCCACTAGAA................................................ 25 1 1 4.00 4 4 0 0 0 0 0 0
......................................................................................TTAGTCAAATCTTTTTCCCACTAG.................................................. 24 1 1 4.00 4 0 2 1 0 0 0 1
......................................................................................TTAGTCAAATGTTTCTCCCACTAG.................................................. 24 1 1 4.00 4 2 1 0 1 0 0 0
......................................................................................TTAGTCAAATGTTTTTCCCACAAG.................................................. 24 1 1 4.00 4 3 1 0 0 0 0 0
......................................................................................TTAGTCAAATGTTTTTCTCACTAG.................................................. 24 1 1 4.00 4 3 0 0 0 0 1 0
.......................................................................................TAGACAAATGTTTTTCCCACTAG.................................................. 23 1 1 4.00 4 4 0 0 0 0 0 0
.......................................................................................TAGTCAAATGTTTTTTCCACTAG.................................................. 23 1 1 4.00 4 4 0 0 0 0 0 0
.....................................................................................CTTAGTCAAATGTTTTTCCCACT.................................................... 23 1 1 4.00 4 4 0 0 0 0 0 0
......................................................................................TTAGTCAAATGTTTTTACCACTAG.................................................. 24 1 1 4.00 4 0 4 0 0 0 0 0
......................................................................................TAAGTCAAATGTTTTTCCCACTAG.................................................. 24 1 1 4.00 4 3 1 0 0 0 0 0
......................................................................................TTAGTCAAATGTTTTTCCCCCT.................................................... 22 1 1 4.00 4 1 1 0 0 1 0 1
......................................................................................TTAGTCAACTGTTTTTCCCACT.................................................... 22 1 1 4.00 4 2 2 0 0 0 0 0
......................................................................................TTCGTCAAATGTTTTTCCCACTAG.................................................. 24 1 1 4.00 4 0 3 0 1 0 0 0
......................................................................................TTAGTCAAATATTTTTCCCACTAG.................................................. 24 1 1 4.00 4 3 1 0 0 0 0 0
......................................................................................TTAGTCAAATGTTTTTGCCACTAG.................................................. 24 1 1 4.00 4 2 0 0 0 0 2 0
..................................................GTGGGTAAATCTTTGATTATTA........................................................................................ 22 1 1 4.00 4 0 3 0 0 0 0 1
......................................................................................TTAGTCAAATGTTTTTCCTACTAG.................................................. 24 1 1 4.00 4 3 1 0 0 0 0 0
......................................................................................TTAGTCAAATGTTTTTCCCACTAGAA................................................ 26 1 1 4.00 4 3 0 1 0 0 0 0
......................................................................................TTAGTCAACTGTTTTTCCCACTA................................................... 23 1 1 3.00 3 3 0 0 0 0 0 0
......................................................................................TTAGTCAAATGTTTTTCCCACTC................................................... 23 1 1 3.00 3 1 2 0 0 0 0 0
..................................................GTGGGCAAATCTTTGATTAGTA........................................................................................ 22 1 1 3.00 3 0 3 0 0 0 0 0
......................................................................................TTGGTCAAATGTTTTTCCCACT.................................................... 22 1 1 3.00 3 1 2 0 0 0 0 0
......................................................................................TTCGTCAAATGTTTTTCCCACT.................................................... 22 1 1 3.00 3 0 2 0 1 0 0 0
......................................................................................TTAGTCAAATGTGTTTCCCACTAG.................................................. 24 1 1 3.00 3 3 0 0 0 0 0 0
......................................................................................TGAGTCAAATGTTTTTCCCACTA................................................... 23 1 1 3.00 3 2 0 0 1 0 0 0
......................................................................................TTAGTCAAATGTTTTTCCC....................................................... 19 0 1 3.00 3 2 1 0 0 0 0 0
......................................................................................GTAGTCAAATGTTTTTCCCACTA................................................... 23 1 1 3.00 3 3 0 0 0 0 0 0
.......................................................................................TAGTCAAATGTTTTTCCCACGAG.................................................. 23 1 1 3.00 3 3 0 0 0 0 0 0
............................................................................................AAATGTTTTTCCCACTAG.................................................. 18 0 1 3.00 3 3 0 0 0 0 0 0
........................................................................................AGTCAAATGTTTTTCCAACTAGT................................................. 23 2 1 3.00 3 0 3 0 0 0 0 0
......................................................................................TTATTCAAATGTTTTTCCCACTA................................................... 23 1 1 3.00 3 2 0 0 1 0 0 0
......................................................................................TTAGTCAAATGTCTTTCCCACTAG.................................................. 24 1 1 3.00 3 0 3 0 0 0 0 0
......................................................................................TTAGTCAAATGTTTTCCCCACT.................................................... 22 1 1 3.00 3 1 2 0 0 0 0 0
......................................................................................TTAGTCAAATGTTTTTCCCACTG................................................... 23 1 1 3.00 3 0 3 0 0 0 0 0
......................................................................................TTAGTCAAATGTTTTTCCCAATAG.................................................. 24 1 1 3.00 3 0 3 0 0 0 0 0
......................................................................................TTAGTAAAATGTTTTTCCCACTA................................................... 23 1 1 3.00 3 0 3 0 0 0 0 0
......................................................................................TTAGTCAAATTTTTTTCCCACT.................................................... 22 1 1 3.00 3 0 3 0 0 0 0 0
......................................................................................TTAGTCAAACGTTTTTCCCACT.................................................... 22 1 1 3.00 3 1 2 0 0 0 0 0
.........................................................................................................................................GCATCCGGTGGTGGAAAATGGGC 23 0 1 3.00 3 0 2 1 0 0 0 0
......................................................................................TTAGTCTAATGTTTTTCCCACTAG.................................................. 24 1 1 3.00 3 3 0 0 0 0 0 0
.......................................................................................TATTCAAATGTTTTTCCCACTAG.................................................. 23 1 1 3.00 3 3 0 0 0 0 0 0
......................................................................................TTAGTCAAATGGTTTTCCCACTA................................................... 23 1 1 3.00 3 3 0 0 0 0 0 0
......................................................................................TTAGTCAAATGTTTTTCGCACTAG.................................................. 24 1 1 3.00 3 0 0 0 0 1 2 0
.....................................................................................................................................AAACGCATCCGGTGGTGGAAAATGGGC 27 0 1 3.00 3 1 0 2 0 0 0 0
.....................................................................................CTTAGTCAAATGTTTTTCCCACTA................................................... 24 1 1 3.00 3 3 0 0 0 0 0 0
......................................................................................TTAGTCAAATGTTTTTCACACTA................................................... 23 1 1 3.00 3 3 0 0 0 0 0 0
......................................................................................TTAATCAAATGTTTTTCCCACT.................................................... 22 1 1 3.00 3 1 2 0 0 0 0 0
.....................................................................................TTTAGTCAAATGTTTTTCCCACT.................................................... 23 1 1 2.00 2 2 0 0 0 0 0 0
......................................................................................TTACTCAAATGTTTTTCCCACT.................................................... 22 1 1 2.00 2 1 1 0 0 0 0 0
......................................................................................TAAGTCAAATGTTTTTCCCACT.................................................... 22 1 1 2.00 2 1 0 0 1 0 0 0
......................................................................................TTAGTCAAATGTTCTTCCCACTA................................................... 23 1 1 2.00 2 1 1 0 0 0 0 0
......................................................................................TTAGTCAAATGTTTTTCCCATTAG.................................................. 24 1 1 2.00 2 2 0 0 0 0 0 0
......................................................................................TTTGTCAAATGTTTTTCCCACTA................................................... 23 1 1 2.00 2 1 1 0 0 0 0 0
......................................................................................TTAGTCAAATGTTTTTCCCACTATT................................................. 25 2 1 2.00 2 1 1 0 0 0 0 0
......................................................................................TTAGTCAAATGTTTTTTCCACTA................................................... 23 1 1 2.00 2 1 1 0 0 0 0 0
......................................................................................TTAGCCAAATGTTTTTCCCACTAGA................................................. 25 1 1 2.00 2 2 0 0 0 0 0 0
.....................................................................................GTTAGTCAAATGTTTTTCCCACT.................................................... 23 1 1 2.00 2 2 0 0 0 0 0 0
.......................................................................................TTGTCAAATGTTTTTCCCACTAG.................................................. 23 1 1 2.00 2 2 0 0 0 0 0 0
........................................................................................................................................CGCATCCGGTGGTGGAAAATGGGC 24 0 1 2.00 2 0 0 1 0 1 0 0
.......................................................................................TAGTCAAATGTTTCTCCCACTAG.................................................. 23 1 1 2.00 2 2 0 0 0 0 0 0
..................................................GTGGGTAAATCTTTGATT............................................................................................ 18 0 1 2.00 2 1 1 0 0 0 0 0
......................................................................................TTAGTCAAATGTTTTCCCCACTA................................................... 23 1 1 2.00 2 1 1 0 0 0 0 0
......................................................................................TTAGTCAAATGTTTTTCTCACT.................................................... 22 1 1 2.00 2 0 2 0 0 0 0 0
.......................................................................................TTGTCAAATGTTTTTCCCACTA................................................... 22 1 1 2.00 2 2 0 0 0 0 0 0
..................................................GTGGGTAAATCTTTTATTAGTA........................................................................................ 22 1 1 2.00 2 0 2 0 0 0 0 0
......................................................................................TTAGTCAAATGTTTTTACCACTA................................................... 23 1 1 2.00 2 0 2 0 0 0 0 0
......................................................................................TTAGTCAAATGTTTTTCCCACTAAAAA............................................... 27 3 1 2.00 2 2 0 0 0 0 0 0
......................................................................................TTAGTCACATGTTTTTCCCACT.................................................... 22 1 1 2.00 2 1 0 0 1 0 0 0
..................................................GTGTGTAAATCTTTGATTAGTA........................................................................................ 22 1 1 2.00 2 1 1 0 0 0 0 0
......................................................................................TTAGTCAAAGGTTTTTCCCACTAG.................................................. 24 1 1 2.00 2 1 0 0 0 0 1 0
......................................................................................TTAGTCAAATGTTTTTCCTACT.................................................... 22 1 1 2.00 2 0 1 1 0 0 0 0
.....................................................................................CTTAGTCAAATGTTTTTCCCACTAGT................................................. 26 2 1 2.00 2 0 1 1 0 0 0 0
......................................................................................TTAGTCAAATGTTTTTCCCGCT.................................................... 22 1 1 2.00 2 0 2 0 0 0 0 0
.......................................................................................................................................ACGCATCCGGTGGTGGAAAATG... 22 0 1 2.00 2 0 0 2 0 0 0 0
........................................................................................TTTCAAATGTTTTTCCCACTAG.................................................. 22 2 1 2.00 2 2 0 0 0 0 0 0
......................................................................................TTAGTCAAATGTTTTTCCCACTAGTAA............................................... 27 3 1 2.00 2 2 0 0 0 0 0 0
......................................................................................TTAGTCAATTGTTTTTCCCACTAG.................................................. 24 1 1 2.00 2 2 0 0 0 0 0 0
...............CTATTTGACAGTAAAGCCACAA........................................................................................................................... 22 0 1 2.00 2 0 1 1 0 0 0 0
......................................................................................TTAGTCAAATGTTTTTCCCACTAGTT................................................ 26 1 1 2.00 2 1 0 1 0 0 0 0
......................................................................................TTAGTTAAATGTTTTTCCCACTA................................................... 23 1 1 2.00 2 1 1 0 0 0 0 0
.........................................................................................TTCAAATGTTTTTCCCACT.................................................... 19 1 1 2.00 2 0 2 0 0 0 0 0
......................................................................................GTAGTCAAATGTTTTTCCCACT.................................................... 22 1 1 2.00 2 2 0 0 0 0 0 0
......................................................................................TGAGTCAAATGTTTTTCCCAC..................................................... 21 1 1 2.00 2 0 0 0 2 0 0 0
...........................................................................................CAAATGTTTTTCCCACTAGT................................................. 20 1 1 2.00 2 2 0 0 0 0 0 0
......................................................................................TTAGTCAAATGTTTTTCCCATT.................................................... 22 1 1 2.00 2 1 1 0 0 0 0 0
.......................................................................................TAGTCAAATGTTTTTCCCACG.................................................... 21 1 1 2.00 2 2 0 0 0 0 0 0
.GTAGTAGCGTTTGTCTATT............................................................................................................................................ 19 0 1 2.00 2 0 0 2 0 0 0 0
......................................................................................TTAGTCAGATGTTTTTCCCACT.................................................... 22 1 1 2.00 2 0 1 0 0 1 0 0
......................................................................................TTAGTCCAATGTTTTTCCCACTAGT................................................. 25 2 1 2.00 2 2 0 0 0 0 0 0
..................................................GTGGGTAAATATTTGATTAGTA........................................................................................ 22 1 1 2.00 2 0 2 0 0 0 0 0
......................................................................................TTAGTCGAATGTTTTTCCCACT.................................................... 22 1 1 2.00 2 0 2 0 0 0 0 0
..................................................GGGGGTAAATCTTTGATTAGTA........................................................................................ 22 1 1 2.00 2 0 0 2 0 0 0 0
......................................................................................TTAGTCAAATGTTTGTCCCACTAG.................................................. 24 1 1 2.00 2 2 0 0 0 0 0 0
......................................................................................TTAGTCATATGTTTTTCCCACTAG.................................................. 24 1 1 2.00 2 2 0 0 0 0 0 0
......................................................................................TTAGTCAAATGTTTTTCCAACTAGT................................................. 25 2 1 2.00 2 0 1 1 0 0 0 0
..................................................GTGGGTAAATCTTTGATTA........................................................................................... 19 0 1 2.00 2 1 0 1 0 0 0 0
..................................................GTGGGTCAATCTTTGATTAGTC........................................................................................ 22 2 1 1.00 1 0 0 0 0 0 0 1
......................................................................................TTAGACAAATGTTTCTCCCACTAG.................................................. 24 2 1 1.00 1 1 0 0 0 0 0 0
......................................................................................TTAGTCAAATGTTTTTCCCACTAGAAA............................................... 27 2 1 1.00 1 1 0 0 0 0 0 0
......................................................................................TTAGTCAAATGTTTTTGCCACTA................................................... 23 1 1 1.00 1 0 0 0 0 0 1 0
......................................................................................TTAGTCAAATGTTTTTCACACTAGA................................................. 25 1 1 1.00 1 1 0 0 0 0 0 0
......................................................................................TTAGTCAAACGTTTTTCCCACTAG.................................................. 24 1 1 1.00 1 0 0 0 0 0 1 0
..................................................GTGGGTAAGTCTTTGATTAGTA........................................................................................ 22 1 1 1.00 1 0 1 0 0 0 0 0
......................................................................................TTAGTCAAATGTTTTTCCCCCTA................................................... 23 1 1 1.00 1 1 0 0 0 0 0 0
........................................................................................AGTCAAATGTTTTTCCCCCTAGT................................................. 23 2 1 1.00 1 0 1 0 0 0 0 0
..................................................GTGGGTAAATCTTTGATCAGTA........................................................................................ 22 1 1 1.00 1 0 1 0 0 0 0 0
.......................................................................................TAGTGAAATGTTTTTCCCACTAG.................................................. 23 1 1 1.00 1 1 0 0 0 0 0 0
.......................................................................................TAGTCAAATGTTTTTTCCACTA................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0
......................................................................................TTAGTCAGATGTTTTCCCCACT.................................................... 22 2 1 1.00 1 0 0 0 0 1 0 0
......................................................................................TTAGTCAAATGTTTTTCCCACTAGAG................................................ 26 1 1 1.00 1 0 0 1 0 0 0 0
......................................................................................TTAGTCAAATGTTGTTCCCACTA................................................... 23 1 1 1.00 1 1 0 0 0 0 0 0
......................................................................................TTAGCCAAACGTTTTTCGCACTAG.................................................. 24 3 1 1.00 1 0 0 0 0 0 0 1
......................................................................................TTAGTCAAATGTTTTTCCCAATA................................................... 23 1 1 1.00 1 0 0 1 0 0 0 0
..................................................GTGGGTAAATCTTTGATTAGTC........................................................................................ 22 1 1 1.00 1 0 1 0 0 0 0 0
......................................................................................TTAGTCAAATGTTTTTCCCACTAGAAAAA............................................. 29 3 1 1.00 1 1 0 0 0 0 0 0
..................................................GTGGGTAAATCTTTGATTAGCA........................................................................................ 22 1 1 1.00 1 1 0 0 0 0 0 0
......................................................................................TTAGTTAAATATTTTTCCCACTAG.................................................. 24 2 1 1.00 1 1 0 0 0 0 0 0
......................................................................................TTAGTCAAATGTTTTTCCCACTAAAA................................................ 26 2 1 1.00 1 1 0 0 0 0 0 0
..................................................GTGGGTAAATCTTTGACTAGTA........................................................................................ 22 1 1 1.00 1 0 1 0 0 0 0 0
..................................................GTGGGTAAATCTTTCATTAGTA........................................................................................ 22 1 1 1.00 1 0 1 0 0 0 0 0
......................................................................................TTAGTCAAATGTTTTTCCCCCTAGA................................................. 25 1 1 1.00 1 1 0 0 0 0 0 0
......................................................................................TTAGTCAAATGTTTTTCCCACA.................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0
......................................................................................TTAGTCAAATGTTATTCCCACTAG.................................................. 24 1 1 1.00 1 0 0 0 0 0 1 0
......................................................................................TTAGTCAAATGCTTTTCCCAGTA................................................... 23 2 1 1.00 1 1 0 0 0 0 0 0
......................................................................................TTAGTGAAATGTTTTTCCCACTAG.................................................. 24 1 1 1.00 1 0 1 0 0 0 0 0
..................................................GTGGGTAAATCTTGGATTAGTA........................................................................................ 22 1 1 1.00 1 1 0 0 0 0 0 0
.......................................................................................TAGGCAAATGTTTTTCCCACTAG.................................................. 23 1 1 1.00 1 0 0 0 1 0 0 0
.....................................................................................................................................AAACGCATCCGGTGGTGGAAAATG... 24 0 1 1.00 1 0 1 0 0 0 0 0
......................................................................................TTAGTCAAATGTTTTGCCCACTAGT................................................. 25 2 1 1.00 1 0 1 0 0 0 0 0
......................................................................................TTAGTCGAGTGTTTTTCCCACT.................................................... 22 2 1 1.00 1 0 0 0 0 1 0 0
......................................................................................ATAGTCAAATGTTTTTCCCACT.................................................... 22 1 1 1.00 1 0 0 0 1 0 0 0
..................................................................................GATCTTAGTCAAATGTTTTTCCCACT.................................................... 26 2 1 1.00 1 0 1 0 0 0 0 0
......................................................................................TTGGTCAAATGTTTTTCCCACTA................................................... 23 1 1 1.00 1 0 1 0 0 0 0 0
......................................................................................CTAGTCAAATGTTTTTCCCACT.................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0
...................................................................................AGCTTAGTCAAATGTTTTTCCCACTAG.................................................. 27 2 1 1.00 1 1 0 0 0 0 0 0
.......................................................................................TAGTCAAATGTTTTTCCAACTAG.................................................. 23 1 1 1.00 1 1 0 0 0 0 0 0
.....................................................................................ATTAGTCAAATGTTTTTCCCACT.................................................... 23 0 1 1.00 1 1 0 0 0 0 0 0
.......................................................................................................................................ACGCATCCGGTGGTGGAAAATGGGC 25 0 1 1.00 1 0 0 1 0 0 0 0
......................................................................................TTAGTAAAATGTTTTTCACACT.................................................... 22 2 1 1.00 1 0 1 0 0 0 0 0
......................................................................................CTAGTCAAATGTTTTTCCCACTAGT................................................. 25 2 1 1.00 1 1 0 0 0 0 0 0
...........................................................................................CAAATGTTTTTCCCACTA................................................... 18 0 1 1.00 1 1 0 0 0 0 0 0
......................................................................................TTAGTCAAATGTTTTTCCCAGTAGA................................................. 25 1 1 1.00 1 1 0 0 0 0 0 0
....................................................................................................................CAATCTTGGCAATGTACAAACGCATC.................. 26 0 1 1.00 1 0 0 0 1 0 0 0
......................................................................................TTAGTCAAATGTTATTCCCACTAGT................................................. 25 2 1 1.00 1 0 0 0 0 0 1 0
......................................................................................TTAGTCACATGTTGTTCCCACTAG.................................................. 24 2 1 1.00 1 0 0 0 0 0 1 0
......................................................................................TTAGTCAAATGTTTTTCACACTAT.................................................. 24 2 1 1.00 1 1 0 0 0 0 0 0
......................................................................................TTACACAAATGTTTTTCCCACTA................................................... 23 2 1 1.00 1 0 0 0 0 1 0 0
........................................................................................AGACAAATGTTTTTCCCACTAGT................................................. 23 2 1 1.00 1 0 1 0 0 0 0 0
.......................................................................................GAGTCAAATGTTTTTCCCACTAG.................................................. 23 1 1 1.00 1 1 0 0 0 0 0 0
..................................................GTGGGTAGATCTTTGATTAGTA........................................................................................ 22 1 1 1.00 1 0 0 0 0 1 0 0
....................................................................................TCTTAGTCAAATGTTTTTCCCACTAG.................................................. 26 1 1 1.00 1 1 0 0 0 0 0 0
......................................................................................TTAGTCCACTGTTTTTCCCACTA................................................... 23 2 1 1.00 1 1 0 0 0 0 0 0
......................................................................................TTATTCAAATGTTTTTCCCACTAGT................................................. 25 2 1 1.00 1 0 1 0 0 0 0 0
......................................................................................TTAGTCAAATGTTTTTCCGACT.................................................... 22 1 1 1.00 1 0 1 0 0 0 0 0
......................................................................................ATAGTCAAATGTTTTTCCCACTAGT................................................. 25 2 1 1.00 1 0 1 0 0 0 0 0
......................................................................................TTAGTCAAATATTTTTCCCACTAGA................................................. 25 1 1 1.00 1 0 0 0 1 0 0 0
..................................................GTGGGAAAATCTTTGATTAGTA........................................................................................ 22 1 1 1.00 1 0 1 0 0 0 0 0
......................................................................................TTATTCAAATGTTTTTCCCAATAG.................................................. 24 2 1 1.00 1 0 1 0 0 0 0 0
.......................................................................................TAGTCAAATGTTTTTCCCACTAAA................................................. 24 1 1 1.00 1 1 0 0 0 0 0 0
.......................................................................................TATTCACATGTTTTTCCAACTAG.................................................. 23 3 1 1.00 1 1 0 0 0 0 0 0
.......................................................................................TAGTCAAATGTTTTTCCCACTAC.................................................. 23 1 1 1.00 1 1 0 0 0 0 0 0
..................................................GTGAGTAAATCTTTGATTAGT......................................................................................... 21 1 1 1.00 1 0 0 0 0 1 0 0
.....................................................................................CTTAGTCAAATGTTTTTCCCACC.................................................... 23 2 1 1.00 1 0 0 0 1 0 0 0
......................................................................................TTAGTAAAATGTTTTTCCAACTAG.................................................. 24 2 1 1.00 1 0 1 0 0 0 0 0
......................................................................................................................................AACACATCCGGTGGTGGAAAATG... 23 1 1 1.00 1 0 1 0 0 0 0 0
......................................................................................TTAGTCAAATGTTTTTCCCACTAGAAAA.............................................. 28 3 1 1.00 1 1 0 0 0 0 0 0
......................................................................................TGAGTCAAATGTTTTTCCCACTAC.................................................. 24 2 1 1.00 1 0 0 0 1 0 0 0
......................................................................................TTAGGCAAATGTTTTTCCCACTA................................................... 23 1 1 1.00 1 1 0 0 0 0 0 0
......................................................................................TTAGTCAACTGCTTTTCCCACTAG.................................................. 24 2 1 1.00 1 1 0 0 0 0 0 0
......................................................................................TTAGTCAGATGTTTTTCCCACTA................................................... 23 1 1 1.00 1 1 0 0 0 0 0 0
..........................TAAAGCCACAAATCCAAAAGAAC............................................................................................................... 23 0 1 1.00 1 1 0 0 0 0 0 0
...............CTATTTGACAGTAAAGCCACA............................................................................................................................ 21 0 1 1.00 1 0 1 0 0 0 0 0
......................................................................................TTAGTCAAATGTTTTTCCCACTAGCA................................................ 26 2 1 1.00 1 1 0 0 0 0 0 0
.......................................................................................TAGACAAATGTTTGTCCAACTAG.................................................. 23 3 1 1.00 1 1 0 0 0 0 0 0
......................................................................................TTCGTCAAATGTTTTTCCCAATAG.................................................. 24 2 1 1.00 1 0 1 0 0 0 0 0
......................................................................................TTAGTCAAATGTTTTTCCCCCTAGT................................................. 25 2 1 1.00 1 0 0 0 0 0 1 0
......................................................................................TTAGTCAAATGTTTTTACTACTA................................................... 23 2 1 1.00 1 0 1 0 0 0 0 0
.....................................................................................ATTAGTCAAATGTTTTTCCCACAA................................................... 24 1 1 1.00 1 1 0 0 0 0 0 0
......................................................................................TTAGTCAAATGTTTATCCCACTAGT................................................. 25 2 1 1.00 1 1 0 0 0 0 0 0
......................................................................................CTAGTCAAATGTTTTTCCCACTA................................................... 23 1 1 1.00 1 0 0 0 1 0 0 0
..................................................GTGGGTAAATCTTTGTTTAGTA........................................................................................ 22 1 1 1.00 1 1 0 0 0 0 0 0
......................................................................................TTAGTCAAATGTTTTTCCACCT.................................................... 22 2 1 1.00 1 0 0 0 0 1 0 0
......................................................................................TTACTCAAATGTTTTTCCCACTA................................................... 23 1 1 1.00 1 1 0 0 0 0 0 0
......................................................................................TTAGTCAAATGTGTTTCACACTAG.................................................. 24 2 1 1.00 1 1 0 0 0 0 0 0
.......................................................................................TAGTCAAATGTTTTTCCCACTAT.................................................. 23 1 1 1.00 1 1 0 0 0 0 0 0
.........................................................................................GTCAAATGTTTTTCCCACTAGT................................................. 22 1 1 1.00 1 1 0 0 0 0 0 0
...................................................TGGGCAAATCTTTGATTAGTA........................................................................................ 21 1 1 1.00 1 1 0 0 0 0 0 0
.......................................................................................TAGTCAAATGTTTTTCCCACTCG.................................................. 23 1 1 1.00 1 1 0 0 0 0 0 0
......................................................................................TTAGTCAAATGTTTTTCCCACCTG.................................................. 24 2 1 1.00 1 0 1 0 0 0 0 0
.......................................................................................TAGTCAACTGTTTTTCCCACTA................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0
......................................................................................TGATTCAAATGTTTTTCCCACTAG.................................................. 24 2 1 1.00 1 0 0 0 1 0 0 0
......................................................................................TTAGTCAAATGTTTTTCCAA...................................................... 20 1 1 1.00 1 1 0 0 0 0 0 0
........................................................................................AGGCAAATGTTTTTCCCACTAGT................................................. 23 2 1 1.00 1 0 1 0 0 0 0 0
......................................................................................................................................AACGCATCCGGTGGTGGAAAATGGG. 25 0 1 1.00 1 0 0 1 0 0 0 0
.......................................................................................TAGTCAAATGTGTTTCCCACTAG.................................................. 23 1 1 1.00 1 1 0 0 0 0 0 0
......................................................................................GTAGTTAAATGTTTTTCCCACTA................................................... 23 2 1 1.00 1 1 0 0 0 0 0 0
......................................................................................TTAGTCAAATGTTTTTCGCACTA................................................... 23 1 1 1.00 1 0 1 0 0 0 0 0
......................................................................................TTAGTCAAATGTTTTTCCCACCCT.................................................. 24 3 1 1.00 1 0 0 0 0 0 0 1
......................................................................................TGAGTCAAATGTTTTTCCCACC.................................................... 22 2 1 1.00 1 0 0 0 1 0 0 0
......................................................................................TTAGTCAAATGTTTTTTCCACT.................................................... 22 1 1 1.00 1 1 0 0 0 0 0 0
........................................................................................AGTCAAATGTTTTTCCAACTAGA................................................. 23 1 1 1.00 1 0 1 0 0 0 0 0
......................................................................................TTAGTCAAATGTTTATCCCACTAG.................................................. 24 1 1 1.00 1 1 0 0 0 0 0 0
........................................................................................AGTGAAATGTTTTTCCCACTAGT................................................. 23 2 1 1.00 1 0 1 0 0 0 0 0
......................................................................................TTAGTCAAATGTTTTTCCCACTTGT................................................. 25 2 1 1.00 1 0 1 0 0 0 0 0
..................................................TTGGGTAAATCTTTGATTAGTA........................................................................................ 22 1 1 1.00 1 0 1 0 0 0 0 0
.....................................................................................CTTAGTCAAATGTTTTTACCACTAG.................................................. 25 2 1 1.00 1 1 0 0 0 0 0 0
......................................................................................TTAGTCAAATGTTTTTCCCACTAGTTAAA............................................. 29 3 1 1.00 1 1 0 0 0 0 0 0

Anti-sense strand reads

CCATCATCGCAAACAGATAAACTGTCATTTCGGTGTTTAGGTTTTCTTGCCACCCATTTAGAAACTAATCATAACCAAAGTTATATAATCAGTTTACAAAAAGGGTGATCTAAATAGTTAGAACCGTTACATGTTTGCGTAGGCCACCACCTTTTACCCG

**************************************************(((((.((((.((((((((((((((....))))))..)))))))).))))..)))))...************************************************** 		Read size # Mismatch Hit Count Total Norm Total M055

female body
.....................CTATCATTTCGGTGTTGAGGT...................................................................................................................... 21 2 1 1.00 1 1
.....................CTATCATTTCGGTGTTGAG........................................................................................................................ 19 2 1 1.00 1 1

Re-alignment of all predicted orthologs

Species Coordinate ID Type Alignment
droEre2 scaffold_4820:5353854-5354014 + der_32 confident GGTAGTAGCGTTTGTCTATTTGACAGTAAA--GCCACAAATCCAAAAGAACGGTGGGTAAA-TCTTTGATTAGTATTGGTTT---CAA-------TATATT----AGTCA----------------A----------------------------------A-----T-G-TTTTTCCCACTAGATTTATCAATCTTGGCAATGTACAAACGCATCCGGTGGTGGAAAATGGGCA
droYak3 3R:23804810-23804970 + dya_27 confident GGCAGCAGCGTTTGTCTATTTAATAACAAA--GCCACCAATCCAAAAGAACGGTGGGTAGA-ACTTTGATTAATATTGCTTG---CAA-------GATATT----AGTCA----------------A----------------------------------A------GG-TTTTTCCCCATAGATTTATCAATTTCGGCAATGTACAAACGCATCCTGTGGTGGAGAATGGGCA
droSec2 scaffold_13:1460514-1460672 - dse_25 confident GGCAGCAGCATTTGTCTCTTTGATAGTAAA--GCCACTAATCCAAAGGAACGGTGGGTAGA-ACTTTGATTAATATTGCTTG----AG-------AATATT----AGTCA----------------A----------------------------------A-------GATTT-TCCCCATAGATTTATCAATTTCGGCAATGTACAAACGCATCCGGTGGTGGAGAAAGGGCA
droSim2 3r:22146719-22146877 - dsi-mir-1012 Known_mirbase GGCAGCAGCATTTGTCTCTTTGATAGTAAA--GCCACTAATCCAAAAGAACGGTGGGTAGA-ACTTTGATTAATATTGCTTG----AG-------AATATT----AGTCA----------------A----------------------------------A-------GATTT-TCCCCATAGATTTATCAATTTTGGCAATGTACAAACGCATCCGGTGGTGGAGAAAGGACA
dm3 chr3R:22687020-22687179 - dme-mir-1012 Known_mirbase GGCAGTAGCGTTTGTCTATTTGATAGTAAA--GCCACAAATCCAAAAGAACGGTGGGTAGA-ACTTTGATTAATATTGCTTG---AAA-------AATATT----AGTCA----------------A----------------------------------A-------GATTT-TCCCCATAGATTTATCAATTTCGGCAATGTACAAACGCATCCGGTGGTGGAGAAAGGGCA
droEug1 scf7180000409770:137886-138042 - GGGAGCAGCATTTGTCTGTATAGTCCCAAT--GCTACTAACTCTACAGAACGGTGGGTAAA-CTTTTGACTTATATTGTT------AA-------AATATT----AGTCA----------------A----------------------------------A-------CTTTT-TCCCCCTAGATTTATCAATTTTGGAAATGTACAATCTCAGCCGGTGGTGGAGAACGGACA
droBia1 scf7180000302113:2951533-2951691 - GGCAGCAGCATTTGTCTGTATAATCCCAAG--GCGAGCAGCCCAAAGGAACGGTGGGTATT-CATTTAACTAGTATAAATCG---AGT-------TATATT----AGTCA----------------A----------------------------------A-----T--GGAT-T-CCCATAGATTCATCAACTTCGGCAATGTGCAATCGCGCCCAGTGGTGGAGAGGGGGCA
droTak1 scf7180000415286:732074-732233 - GGCAGCAGCATTTGTCTGTTTAATCCCAAG--GCCACCAACTCAAAAGAACGGTGGGTACTTACTTTGATTAATACTACTTG---CAA-------AATATT----AGTCA----------------A----------------------------------A-----TGG--AT-T-CCCACAGATTTGTGAGCTTTGGCAATGTGCAATCGCGACCAGTGGTGGAGAACGGGCA
droEle1 scf7180000491280:725139-725297 - GGTAGTAGCGTGTGTCTATTCAGTCCCAAA--GCCACGAACTTAAAAGAGCGGTGGGTAAA-CA-TTGATTAATACTTTATG----TG-------GATGTT----AGTCA----------------A----------------------------------T------GGA-TTTCCTACTCAGATTTATAAATTTTGGCAACGTCCAGTCGCGTCCGGTGGTGGAGAACGGGCA
droRho1 scf7180000779166:13443-13601 + GGTAGCAGCGTGTGTTTGTTTAATCCCAAA--GCCACAAATTTAAAAGAACGGTGGGTAAA-CA-TTGATTAATATTTTATG----CG-------GATATT----AGTCA----------------A----------------------------------T------GG-TTTTTCCCATCAGATTTATCAATCTTGGCAATGTCCAGTCGCGTCCGGTGGTGGAAAATGGGCT
droFic1 scf7180000454055:2583584-2583741 - GGCAGCAGCGTGTGTTTATTTAACCCAAAG--GAAACAAATTCAAAGAAACGGTGGGTGAG-CA-TTGGTTAATACAGT-GG----TG-------CATATT----AGTCA----------------A----------------------------------T------GA-TATTCCCCACTAGATTTATCAATTTGGGAAATGTGCAATCGCGTCCATTGGTGGAGAACGGGCA
droKik1 scf7180000297719:58301-58459 + GGCAGCAGCGTGTGTCTGTTCAATCCCAAA--GCCACGGATATGAAGCAGCGGTGAGTTTT-AATTGGTTGTATATTG-AAA----TT-------GCTGAT----TATAA----------------A----------------------------------G------GGT-TTCTCTTTATAGTTTCATCAATTTCGGAAATGTACAGTCGCGTCCGGTGGTCGAAAACGGGCA
droAna3 scaffold_13340:16646722-16646879 + GGAAGTAGCATTTGTCTTTATGATCCAAAA--GAAAGCGATATAAAAAAGCGGTAGGTTTC-AAC-----CAAATTTCCTTT----GA-------GAGTTC----AGTTA----------------ACTTT------------------------------A-------TATAT-TCTTTTTAGCTTCACTAACTTCGGCAATAGTCAGTCACGACCGGTGGTTGAGAATGGACA
droBip1 scf7180000396424:162644-162806 + GGAAGTAGCATCTGCCTATTTGATCCAAAA--GAAACTGACTTTAAAAAACGGTAGGCATT-ATTTAAATTACTATGGGCTA----CT-------ACTATT----AGCTT----------------ACTCC------------------------------A-------TACTT-TCATTTCAGCTTCACCAACCTGGGTAACAGTCAGTCGCGACCGGTGGTTGAGAATGGACA
dp5 2:4781286-4781454 + GGCAGCAGCATATGCCTCTACTCTCCCAAG--GCCACAAATAATTCAGAGCGGTGGGTAGT-CTCTCATATATAGTTATAAA----AGAACGAACACCAGT----GGTTA----------------A-GCA------------------------------A-----T--GCAT-TTCTTGTAGATTCATCAATTTCGGAACTGTGCAGTCGCATCCCGTGGTGGAGAACGGACA
droPer2 scaffold_19:478273-478441 + GGCAGCAGCATATGCCTCTACTCTCCCAAG--GCCACAAATAATTCAGAGCGGTGGGTAGT-CTCTCATATATAGTTATAAA----AGAACGAACACCAGT----GGTAA----------------A-GCA------------------------------A-----T--GCAT-TTCTTGTAGATTCATCAATTTCGGAACTGTGCAGTCGCATCCCGTGGTGGAGAACGGACA
droWil2 scf2_1100000004943:2628973-2629130 + GGAAGCAGCATATGTCTATATTCCCCAAAG--GCCACCAATTTGTCAGAACGGTATGGT---------------AGTGCAAG---AAA-------GCCGAA----ATTCAAAAACACCCTAATTGTA----------------------------------------------ACAATTTGCAGATTTGTCAACTTTGGCACGGTCCAATCGAAGCCCGTTGTGGAAAACGGTCG
droVir3 scaffold_13047:12018065-12018226 - GGCAGCAGCATTTGCTTGTATTCGCCCAAG--GTCAGCGATCTAAAGAAACGGTACGGATT-GT--TTATTTAAATGCTT------TA-------TATATTTATCTATAA----------------G--CT------------------------------A-----T-CT-TTTTGTTTGCAGTTTCATTAACTTTGGTAATGTACAGTCGAAGCCCGTCATTAAAGACGGCCA
droMoj3 scaffold_6540:29763892-29764077 + GGGAGCAGCATTTGTCTTTTTTCCCCTAAA--GAGACCGATTTAAAAAAACGGTGTGTAAA-TA-TGGATTATTATTT---ATAAATTATCGAAAACTTAA----CTTCTAA-----------TGT-------------------------TTTTATATTTATATTTT-CA-ACATACTCTCAGTTTCATCAACTTCGGCAATGTACAGACGCAACCCGTATATAAAAACGAGCA
droGri2 scaffold_14624:2192611-2192820 - GGCAGCAGTATTTGTTTGTTG--TCGCCAGGCCAGATTGATATCAAGAAGCGGTACGTTCTACATTTGGTTGA-ACTATTCT----TG-------AACTTG----AGCCGAAAAAACTTTAGCTGTATTTTAAACATTCTTTTTCAATCTCTTTTGTGTGTG-----T-GT-TTTTATTTGCAGTTTCATTAACTTTGGCAATGTACAAGCGCAGCCGGAAATCAAGGATGGCAA

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droEre2
GGTAGTAGCGTTTGTCTATTTGACAGTAAA--GCCACAAATCCAAAAGAACGGTGGGTAAA-TCTTTGATTAGTATTGGTTT---CAA-------TATATT----AGTCA----------------A----------------------------------A-----T-G-TTTTTCCCACTAGATTTATCAATCTTGGCAATGTACAAACGCATCCGGTGGTGGAAAATGGGCASizeHit CountTotal NormTotalM055

Female-body		M057

Embryo		V060

Head		V040

Embryo		V107

Male-body		V108

Head		GSM1528801

follicle cells
...................................................................................................TT----AGTCA----------------A----------------------------------A-----T-G-TTTTTCCCACTAG...................................................24110902.00109028677189174963511200215
...................................................................................................TT----AGTCA----------------A----------------------------------A-----T-G-TTTTTCCCACT.....................................................2212375.00237592761941315311270
...................................................................................................TT----AGTCA----------------A----------------------------------A-----T-G-TTTTTCCCACTA....................................................2311263.0012638443332146925813
....................................................................................................T----AGTCA----------------A----------------------------------A-----T-G-TTTTTCCCACTAG...................................................231672.00672669000030
....................................................GTGGGTAAA-TCTTTGATTAGTA................................................................................................................................................................221558.00558584810813970
...................................................................................................TT----AGTCA----------------A----------------------------------A-----T-G-TTTTTCCCACTAGT..................................................251316.00316952411097530
...................................................................................................TT----AGTCA----------------A----------------------------------A-----T-G-TTTTTCCCACTAGA..................................................251135.001351095013161
....................................................................................................T----AGTCA----------------A----------------------------------A-----T-G-TTTTTCCCACT.....................................................21190.009087100020
....................................................................................................T----AGTCA----------------A----------------------------------A-----T-G-TTTTTCCCACTA....................................................22169.006968000010
...................................................................................................TT----AGTCA----------------A----------------------------------A-----T-G-TTTTTCCCACTAT...................................................24160.006041057160
...................................................................................................TT----AGTCA----------------A----------------------------------A-----T-G-TTTTTCCCAC......................................................21159.0059356003150
.........................................................................................................AGTCA----------------A----------------------------------A-----T-G-TTTTTCCCACTAGT..................................................23159.005960703430
....................................................GTGGGTAAA-TCTTTGATTAGT.................................................................................................................................................................21138.0038202011230
.........................................................................................................AGTCA----------------A----------------------------------A-----T-G-TTTTTCCCACTAG...................................................22136.003629010150
...................................................................................................TT----AGTCA----------------A----------------------------------A-----T-G-TTTTTCCCA.......................................................20124.00247011591
...................................................................................................TT----AGTCA----------------A----------------------------------A-----T-G-TTTTTCCCACTAA...................................................24118.001813020030
...................................................................................................TT----AGTCA----------------A----------------------------------A-----T-G-TTTTTCCCACC.....................................................22116.001611410000
...........................................................................................................TCA----------------A----------------------------------A-----T-G-TTTTTCCCACTAG...................................................20113.00135000107
...................................................................................................TT----AGTCA----------------A----------------------------------A-----T-G-TTTTTCCCACTT....................................................23111.00117100120
...................................................................................................TT----AGTCA----------------A----------------------------------A-----T-G-TTTTTCCCACTAC...................................................24110.00105310010
..................................................................................................ATT----AGTCA----------------A----------------------------------A-----T-G-TTTTTCCCACTAG...................................................25110.001010000000
....................................................................................................T----AGTCA----------------A----------------------------------A-----T-G-TTTTTCCCACTAGT..................................................2419.0099000000
..........................................................................................................GTCA----------------A----------------------------------A-----T-G-TTTTTCCCACTAG...................................................2117.0076000010
....................................................................................................T----AGTCA----------------A----------------------------------A-----T-G-TTTTTCCCACTAGA..................................................2417.0077000000
...................................................................................................TT----AGTCA----------------A----------------------------------A-----T-G-TTTTTCCCACTAGC..................................................2517.0075000020
.....................................................TGGGTAAA-TCTTTGATTAGTA................................................................................................................................................................2116.0066000000
................................................................................................................................................................................................................AACGCATCCGGTGGTGGAAAATGGGC.2616.0060000510
...................................................................................................TT----AGTCA----------------A----------------------------------A-----T-G-TTTTTCCCACTAGG..................................................2516.0065000010
....................................................GTGGGTAAA-TCTTTGATTAG..................................................................................................................................................................2016.0061000050
.........................................................................................................AGTCA----------------A----------------------------------A-----T-G-TTTTTCCCACT.....................................................2015.0054000010
.........................................................................................................AGTCA----------------A----------------------------------A-----T-G-TTTTTCCCACTAGA..................................................2315.0054100000
.........................................................................................................AGTCA----------------A----------------------------------A-----T-G-TTTTTCCCACTA....................................................2115.0053000020
............................................................................................................CA----------------A----------------------------------A-----T-G-TTTTTCCCACTAG...................................................1914.0043000010
....................................................................................................T----AGTCA----------------A----------------------------------A-----T-G-TTTTTCCCACTAGAA.................................................2514.0044000000
...................................................................................................TT----AGTCA----------------A----------------------------------A-----T-G-TTTTTCCCACTAGAA.................................................2614.0043000100
...................................................................................................TT----AGTCA----------------A----------------------------------A-----T-G-TTTTTCCCACTC....................................................2313.0031000020
...................................................................................................TT----AGTCA----------------A----------------------------------A-----T-G-TTTTTCCC........................................................1913.0032000010
.............................................................................................................A----------------A----------------------------------A-----T-G-TTTTTCCCACTAG...................................................1813.0033000000
...................................................................................................TT----AGTCA----------------A----------------------------------A-----T-G-TTTTTCCCACTG....................................................2313.0030000030
...................................................................................................................................................................................................................GCATCCGGTGGTGGAAAATGGGC.2313.0030000120
...............................................................................................................................................................................................................AAACGCATCCGGTGGTGGAAAATGGGC.2713.0031000200
...................................................................................................TT----AGTCA----------------A----------------------------------A-----T-G-TTTTTCCCACTATT..................................................2512.0021000010
..................................................................................................................................................................................................................CGCATCCGGTGGTGGAAAATGGGC.2412.0020010100
....................................................GTGGGTAAA-TCTTTGATT....................................................................................................................................................................1812.0021000010
.................................................................................................................................................................................................................ACGCATCCGGTGGTGGAAAATG....2212.0020000200
...................................................................................................TT----AGTCA----------------A----------------------------------A-----T-G-TTTTTCCCACTAGTAA................................................2712.0022000000
...............CTATTTGACAGTAAA--GCCACAA....................................................................................................................................................................................................2212.0020000110
............................................................................................................CA----------------A----------------------------------A-----T-G-TTTTTCCCACTAGT..................................................2012.0022000000
....................................................................................................T----AGTCA----------------A----------------------------------A-----T-G-TTTTTCCCACG.....................................................2112.0022000000
.GTAGTAGCGTTTGTCTATT.......................................................................................................................................................................................................................1912.0020000200
....................................................GTGGGTAAA-TCTTTGATTA...................................................................................................................................................................1912.0021000100
...................................................................................................TT----AGTCA----------------A----------------------------------A-----T-G-TTTTTCCCACTAGAAA................................................2711.0011000000
...................................................................................................TT----AGTCA----------------A----------------------------------A-----T-G-TTTTTCCCACTAGAG.................................................2611.0010000100
....................................................GTGGGTAAA-TCTTTGATTAGTC................................................................................................................................................................2211.0010000010
...................................................................................................TT----AGTCA----------------A----------------------------------A-----T-G-TTTTTCCCACA.....................................................2211.0011000000
...............................................................................................................................................................................................................AAACGCATCCGGTGGTGGAAAATG....2411.0010000010
..................................................................................................ATT----AGTCA----------------A----------------------------------A-----T-G-TTTTTCCCACT.....................................................2311.0011000000
.................................................................................................................................................................................................................ACGCATCCGGTGGTGGAAAATGGGC.2511.0010000100
............................................................................................................CA----------------A----------------------------------A-----T-G-TTTTTCCCACTA....................................................1811.0011000000
..............................................................................................................................................................................................CAATCTTGGCAATGTACAAACGCATC...................2611.0010100000
....................................................................................................T----AGTCA----------------A----------------------------------A-----T-G-TTTTTCCCACTAC...................................................2311.0011000000
...................................................................................................TT----AGTCA----------------A----------------------------------A-----T-G-TTTTTCCCACTAGAAAA...............................................2811.0011000000
..........................TAAA--GCCACAAATCCAAAAGAAC........................................................................................................................................................................................2311.0011000000
...............CTATTTGACAGTAAA--GCCACA.....................................................................................................................................................................................................2111.0010000010
...................................................................................................TT----AGTCA----------------A----------------------------------A-----T-G-TTTTTCCCACTAGCA.................................................2611.0011000000
....................................................................................................T----AGTCA----------------A----------------------------------A-----T-G-TTTTTCCCACTAT...................................................2311.0011000000
..........................................................................................................GTCA----------------A----------------------------------A-----T-G-TTTTTCCCACTAGT..................................................2211.0011000000
................................................................................................................................................................................................................AACGCATCCGGTGGTGGAAAATGGG..2511.0010000100
...................................................................................................TT----AGTCA----------------A----------------------------------A-----T-G-TTTTTCCCACCCT...................................................2411.0010001000
droYak3
GGCAGCAGCGTTTGTCTATTTAATAACAAA--GCCACCAATCCAAAAGAACGGTGGGTAGA-ACTTTGATTAATATTGCTTG---CAA-------GATATT----AGTCA----------------A----------------------------------A------GG-TTTTTCCCCATAGATTTATCAATTTCGGCAATGTACAAACGCATCCTGTGGTGGAGAATGGGCASizeHit CountTotal NormTotalM026

Head		M043

Female-body		M056

Embryo		V046

Embryo		V052

Head		V058

Head		V120

Male-body		SRR1275488

Male larvae		SRR1275486

Male prepupae		SRR1275484

Male prepupae		GSM1528802

follicle cells
....................................................GTGGGTAGA-ACTTTGATTAAT.................................................................................................................................................................2111230.0012305232281312702431400010
...................................................................................................TT----AGTCA----------------A----------------------------------A------GG-TTTTTCCCCATAG...................................................2411042.00104242708664253114170000
....................................................GTGGGTAGA-ACTTTGATTAATA................................................................................................................................................................221579.005791043301526820760000
...................................................................................................TT----AGTCA----------------A----------------------------------A------GG-TTTTTCCCCATAGT..................................................251240.0024029723155215100026
...................................................................................................TT----AGTCA----------------A----------------------------------A------GG-TTTTTCCCCATA....................................................231211.00211015911892040000
...................................................................................................TT----AGTCA----------------A----------------------------------A------GG-TTTTTCCCCA......................................................211165.0016501462241010000
....................................................GTGGGTAGA-ACTTTGATT....................................................................................................................................................................181117.00117431410174200000
....................................................GTGGGTAGA-ACTTTGATTAA..................................................................................................................................................................20174.007413250082350000
....................................................................................................T----AGTCA----------------A----------------------------------A------GG-TTTTTCCCCATAG...................................................23164.0064064000000000
...................................................................................................TT----AGTCA----------------A----------------------------------A------GG-TTTTTCCCCAT.....................................................22163.0063145701810000
...................................................................................................TT----AGTCA----------------A----------------------------------A------GG-TTTTTCCCC.......................................................20148.00480301700100000
....................................................GTGGGTAGA-ACTTTGATTA...................................................................................................................................................................19139.00394120061250000
.....................................................TGGGTAGA-ACTTTGATTAATA................................................................................................................................................................21128.0028226000000000
...................................................................................................TT----AGTCA----------------A----------------------------------A------GG-TTTTTCCCCATAGA..................................................25127.0027021510000000
...................................................................................................TT----AGTCA----------------A----------------------------------A------GG-TTTTTCCCCATAC...................................................24121.0021113321100000
....................................................................................................T----AGTCA----------------A----------------------------------A------GG-TTTTTCCCCATA....................................................22121.0021021000000000
.....................................................TGGGTAGA-ACTTTGATTAAT.................................................................................................................................................................20121.0021317000010000
.........................................................................................................AGTCA----------------A----------------------------------A------GG-TTTTTCCCCATAGT..................................................23113.001308000320000
....................................................................................................T----AGTCA----------------A----------------------------------A------GG-TTTTTCCCCA......................................................20113.0013013000000000
...................................................................................................TT----AGTCA----------------A----------------------------------A------GG-TTTTTCCCCATAT...................................................2419.00903002400000
....................................................................................................T----AGTCA----------------A----------------------------------A------GG-TTTTTCCCCATAGT..................................................2417.00707000000000
......................................................GGGTAGA-ACTTTGATTAAT.................................................................................................................................................................1917.00734000000000
...................................................................................................TT----AGTCA----------------A----------------------------------A------GG-TTTTTCCCCATAGC..................................................2517.00702500000000
...................................................................................................TT----AGTCA----------------A----------------------------------A------GG-TTTTTCCCCATACC..................................................2516.00603300000000
....................................................GTGGGTAGA-ACTTTGATTT...................................................................................................................................................................1915.00511000300000
....................................................GTGGGTAGA-ACTTTGATTAAC.................................................................................................................................................................2115.00540100000000
....................................................GTGGGTAGA-ACTTTGATTAATAA...............................................................................................................................................................2315.00505000000000
....................................................................................................T----AGTCA----------------A----------------------------------A------GG-TTTTTCCCCAT.....................................................2115.00505000000000
.........................................................................................................AGTCA----------------A----------------------------------A------GG-TTTTTCCCCATAG...................................................2215.00505000000000
...................................................................................................TT----AGTCA----------------A----------------------------------A------GG-TTTTTCCCCATAA...................................................2415.00503101000000
...................................................................................................TT----AGTCA----------------A----------------------------------A------GG-TTTTTCCC........................................................1915.00504100000000
...................................................................................................TT----AGTCA----------------A----------------------------------A------GG-TTTTTCCCCATT....................................................2314.00403100000000
....................................................................................................................................................................................................................CATCCTGTGGTGGAGAATGGGC.2214.00402000020000
...................................................................................................TT----AGTCA----------------A----------------------------------A------GG-TTTTTCCCCATAGAAA................................................2714.00403010000000
.........................................................................................................AGTCA----------------A----------------------------------A------GG-TTTTTCCCCAT.....................................................2013.00302001000000
......................................................GGGTAGA-ACTTTGATTAATA................................................................................................................................................................2013.00303000000000
....................................................GTGGGTAGA-ACTTTGATTAATT................................................................................................................................................................2213.00311100000000
..................................................................................................................................................................................................................CGCATCCTGTGGTGGAGAATGGGC.2413.00300000030000
....................................................GTGGGTAGA-ACTTTGATTAATG................................................................................................................................................................2213.00303000000000
..................................................................................................ATT----AGTCA----------------A----------------------------------A------GG-TTTTTCCCCATAG...................................................2513.00303000000000
.............................................................................................................A----------------A----------------------------------A------GG-TTTTTCCCCATAG...................................................1812.00202000000000
.......................................................GGTAGA-ACTTTGATTAAT.................................................................................................................................................................1812.00220000000000
....................................................................................................T----AGTCA----------------A----------------------------------A------GG-TTTTTCCCC.......................................................1912.00202000000000
...................................................................................................TT----AGTCA----------------A----------------------------------A------GG-TTTTTCCCCATAGG..................................................2512.00202000000000
..................................................................................................ATT----AGTCA----------------A----------------------------------A------GG-TTTTTCCCCATA....................................................2412.00201000100000
.....................................................TGGGTAGA-ACTTTGATTAA..................................................................................................................................................................1912.00202000000000
....................................................GTGGGTAGA-ACTTTGATTAAA.................................................................................................................................................................2112.00210100000000
.............................................................................................................................................................................................................ACAAACGCATCCTGTGGTGGAGAATGGGC.2912.00200000020000
..............................................................................................................................................................................................................CAAACGCATCCTGTGGTGGAGA.......2212.00201000010000
....................................................................................................T----AGTCA----------------A----------------------------------A------GG-TTTTTCCCCATAGA..................................................2412.00202000000000
...................................................................................................TT----AGTCA----------------A----------------------------------A------GG-TTTTTCCCCATATT..................................................2512.00201010000000
.........................................................................................................AGTCA----------------A----------------------------------A------GG-TTTTTCCCCATAC...................................................2212.00202000000000
...................................................................................................TT----AGTCA----------------A----------------------------------A------GG-TTTTT...........................................................1621.50300000000003
.................................................................................................................................................................................................................ACGCATCCTGTGGTGGAGAATG....2211.00100000010000
..............................................................................................................................................................................................................CAAACGCATCCTGTGGTGGAGAATGGGC.2811.00100000010000
...................................................................................................TT----AGTCA----------------A----------------------------------A------GG-TTTTTCCCT.......................................................2011.00101000000000
...................................................................................................TT----AGTCA----------------A----------------------------------A------GG-TTTTTCCCCATAGTA.................................................2611.00101000000000
..........................................................................................................GTCA----------------A----------------------------------A------GG-TTTTTCCCCATAGA..................................................2211.00101000000000
.................................................................................................................................................................................................................ACGCATCCTGTGGTGGAGA.......1911.00100000010000
................................................................................................................................................................................................................AACGCATCCTGTGGTGGAGA.......2011.00100000010000
...................................................................................................TT----AGTCA----------------A----------------------------------A------GG-TTTTTCCCCATC....................................................2311.00100100000000
...................................................................................................TT----AGTCA----------------A----------------------------------A------GG-TTTTTCCCCAC.....................................................2211.00100100000000
..........................................................................................................GTCA----------------A----------------------------------A------GG-TTTTTCCCCATAG...................................................2111.00101000000000
............................................................................................................CA----------------A----------------------------------A------GG-TTTTTCCCCATAG...................................................1911.00101000000000
.........................................................................................................AGTCA----------------A----------------------------------A------GG-TTTTTCCCCATA....................................................2111.00101000000000
..................................................................................................ATT----AGTCA----------------A----------------------------------A------GG-TTTTTCCCCAT.....................................................2311.00101000000000
.....................................................TGGGTAGA-ACTTTGATTAATC................................................................................................................................................................2111.00101000000000
............................................................................................................CA----------------A----------------------------------A------GG-TTTTTCCCCATA....................................................1811.00101000000000
..................................................................................................ATT----AGTCA----------------A----------------------------------A------GG-TTTTTCCCC.......................................................2111.00101000000000
.....................................................TGGGTAGA-ACTTTGATTA...................................................................................................................................................................1811.00101000000000
............................................................................................................CA----------------A----------------------------------A------GG-TTTTTCCCCATAGT..................................................2011.00100100000000
.....................................................................................CAA-------GATATT----AGTCA----------------A----------------------------------A------GG-TTTTT...........................................................2311.00101000000000
............TGTCTATTTAATAACAAA--GC.........................................................................................................................................................................................................2011.00101000000000
....................................................................................................T----AGTCA----------------A----------------------------------A------GG-TTTTTCCCCATAGAA.................................................2511.00101000000000
.......................................................GGTAGA-ACTTTGATTAATA................................................................................................................................................................1911.00101000000000
........................................................................................................................................................................................................AATGTACAAACGCATCCTGTGGTGGAGA.......2811.00100000010000
...........................................................................................................................................................................................................GTACAAACGCATCCTGTGGTGGAG........2411.00100100000000
........................................................................................................................................................................................................................CTGTGGTGGAGAATGGGCA1911.00100000010000
..........................................................................................................................................................................................TTATCAATTTCGGCAATGTACAAAC........................2511.00110000000000
...AGCAGCGTTTGTCTATTTAATAACA...............................................................................................................................................................................................................2511.00100000010000
...............................................................................................GATATT----AGTCA----------------A----------------------------------A------GG-TTTTTCCCCA......................................................2511.00101000000000
...........................................................................TTGCTTG---CAA-------GATATT----AGTCA----------------.............................................................................................................2111.00101000000000
.................................................................................................................................................................................................................ACGCATCCTGTGGTGGAGAATGGGC.2511.00100000010000
.....................................................................................................................................................................................................................ATCCTGTGGTGGAGAATGGGC.2111.00100000010000
...................................................................................................TT----AGTCA----------------A----------------------------------A------GG-TTTTTCCCCATTT...................................................2411.00100000100000
....................................................GTGGGTAGA-ACTTTGATTAATC................................................................................................................................................................2211.00100100000000
...........................................................................................................TCA----------------A----------------------------------A------GG-TTTTTCCCCATAG...................................................2011.00101000000000
..........................................................................................................GTCA----------------A----------------------------------A------GG-TTTTTCCCCATAGT..................................................2211.00101000000000
...AGCAGCGTTTGTCTATTTAATAAC................................................................................................................................................................................................................2411.00100000010000
...................................................................................................TT----AGTCA----------------A----------------------------------A------GG-TTTTTCC.........................................................1811.00100100000000
droSec2
GGCAGCAGCATTTGTCTCTTTGATAGTAAA--GCCACTAATCCAAAGGAACGGTGGGTAGA-ACTTTGATTAATATTGCTTG----AG-------AATATT----AGTCA----------------A----------------------------------A-------GATTT-TCCCCATAGATTTATCAATTTCGGCAATGTACAAACGCATCCGGTGGTGGAGAAAGGGCASizeHit CountTotal NormTotalM054

Female-body		V113

Male-body		V114

Embryo		V115

Head
...................................................................................................TT----AGTCA----------------A----------------------------------A-------GATTT-TCCCCATAG...................................................2313479.0034792709236174360
....................................................GTGGGTAGA-ACTTTGATTAAT.................................................................................................................................................................2111946.00194636259156937
....................................................GTGGGTAGA-ACTTTGATTAATA................................................................................................................................................................221876.00876288219157212
...................................................................................................TT----AGTCA----------------A----------------------------------A-------GATTT-TCCCCATAGT..................................................241758.0075829920767185
....................................................GTGGGTAGA-ACTTTGATT....................................................................................................................................................................181375.003751603356
...................................................................................................TT----AGTCA----------------A----------------------------------A-------GATTT-TCCCCATA....................................................221262.00262174252340
....................................................................................................T----AGTCA----------------A----------------------------------A-------GATTT-TCCCCATAG...................................................221197.00197197000
....................................................GTGGGTAGA-ACTTTGATTAA..................................................................................................................................................................201155.001553846368
...................................................................................................TT----AGTCA----------------A----------------------------------A-------GATTT-TCCCCAT.....................................................211101.001013291446
...................................................................................................TT----AGTCA----------------A----------------------------------A-------GATTT-TCCCCATAGA..................................................24167.006757226
....................................................GTGGGTAGA-ACTTTGATTA...................................................................................................................................................................19150.0050168323
....................................................GTGGGTAGA-ACTTTGATTT...................................................................................................................................................................19134.003427025
.....................................................TGGGTAGA-ACTTTGATTAAT.................................................................................................................................................................20130.003028101
.....................................................TGGGTAGA-ACTTTGATTAATA................................................................................................................................................................21127.002724012
...................................................................................................TT----AGTCA----------------A----------------------------------A-------GATTT-TCCCCATAGC..................................................24127.002710638
....................................................GTGGGTAGA-ACTTTGATTAATT................................................................................................................................................................22127.002767014
.........................................................................................................AGTCA----------------A----------------------------------A-------GATTT-TCCCCATAG...................................................21120.002020000
....................................................................................................T----AGTCA----------------A----------------------------------A-------GATTT-TCCCCATAGT..................................................23119.001918001
....................................................GTGGGTAGA-ACTTTGATTAATAT...............................................................................................................................................................23113.00132506
...................................................................................................TT----AGTCA----------------A----------------------------------A-------GATTT-TCCCCATAC...................................................23111.00119101
..................................................................................................ATT----AGTCA----------------A----------------------------------A-------GATTT-TCCCCATAG...................................................24110.00105302
....................................................................................................T----AGTCA----------------A----------------------------------A-------GATTT-TCCCCATA....................................................2119.0099000
....................................................GTGGGTAGA-ACTTTGATTAAA.................................................................................................................................................................2119.0094104
..................................................................................................ATT----AGTCA----------------A----------------------------------A-------GATTT-TCCCCAT.....................................................2219.0092214
...................................................................................................TT----AGTCA----------------A----------------------------------A-------GATTT-TCCCCATAGG..................................................2418.0086101
....................................................GTGGGTAGA-ACTTTGATTAATAA...............................................................................................................................................................2318.0085201
...................................................................................................TT----AGTCA----------------A----------------------------------A-------GATTT-TCCCCA......................................................2018.0082105
...................................................................................................TT----AGTCA----------------A----------------------------------A-------GATTT-TCCCCATAT...................................................2317.0075101
...................................................................................................TT----AGTCA----------------A----------------------------------A-------GATTT-TCCCCATAGTA.................................................2516.0062130
...................................................................................................TT----AGTCA----------------A----------------------------------A-------GATTT-TCCCCATAA...................................................2316.0064011
...................................................................................................TT----AGTCA----------------A----------------------------------A-------GATTT-TCCCCATACC..................................................2415.0054010
...................................................................................................TT----AGTCA----------------A----------------------------------A-------GATTT-TCCCCATAGAA.................................................2515.0053002
.....................................................TGGGTAGA-ACTTTGATTAA..................................................................................................................................................................1914.0044000
....................................................................................................T----AGTCA----------------A----------------------------------A-------GATTT-TCCCCATAGA..................................................2314.0044000
...................................................................................................TT----AGTCA----------------A----------------------------------A-------GATTT-TCCCCATT....................................................2214.0042200
...................................................................................................TT----AGTCA----------------A----------------------------------A-------GATTT-TCCCC.......................................................1913.0031020
...................................................................................................TT----AGTCA----------------A----------------------------------A-------GATTT-TCCCCATAGTAA................................................2613.0030030
....................................................GTGGGTAGA-ACTTTGATTAAG.................................................................................................................................................................2113.0033000
.......................................................GGTAGA-ACTTTGATTAAT.................................................................................................................................................................1813.0033000
............................................................................................................CA----------------A----------------------------------A-------GATTT-TCCCCATAG...................................................1813.0032001
.........................................................................................................AGTCA----------------A----------------------------------A-------GATTT-TCCCCATAGT..................................................2213.0032001
....................................................GTGGGTAGA-ACTTTGATTAATAAAA.............................................................................................................................................................2513.0032100
....................................................GTGGGTAGA-ACTTTGATTAATAAA..............................................................................................................................................................2413.0032001
..................................................................................................ATT----AGTCA----------------A----------------------------------A-------GATTT-TCCCC.......................................................2012.0022000
...................................................................................................TT----AGTCA----------------A----------------------------------A-------GATTT-TCCCCATTT...................................................2312.0022000
.....................................................................................................................................................................................................................ATCCGGTGGTGGAGAAAGGGC.2112.0020200
..................................................................................................ATT----AGTCA----------------A----------------------------------A-------GATTT-TCCCCATAGT..................................................2512.0020101
...................................................................................................TT----AGTCA----------------A----------------------------------A-------GATTT-TCCCCATATT..................................................2412.0020101
....................................................GTGGGTAGA-ACTTTGATTAAC.................................................................................................................................................................2112.0020101
......................................................GGGTAGA-ACTTTGATTAAT.................................................................................................................................................................1912.0022000
....................................................GTGGGTAGA-ACTTTGATTAAAT................................................................................................................................................................2212.0021100
...................................................................................................TT----AGTCA----------------A----------------------------------A-------GATTT-TCCCCATACCA.................................................2512.0022000
....................................................GTGGGTAGA-ACTTTGATTTT..................................................................................................................................................................2011.0011000
.......................................................................................................................................................................................................................CCGGTGGTGGAGAAAGGGC.1911.0011000
...................................................................................................TT----AGTCA----------------A----------------------------------A-------GATTT-TCCCCAG.....................................................2111.0011000
....................................................GTGGGTAGA-ACTTTGATC....................................................................................................................................................................1811.0010001
...................................................GGTGGGTAGA-ACTTTGATTAATA................................................................................................................................................................2311.0011000
.....................................................TGGGTAGA-ACTTTGATTA...................................................................................................................................................................1811.0011000
..........................................................................................................GTCA----------------A----------------------------------A-------GATTT-TCCCCATAG...................................................2011.0011000
..........................................................................................................GTCA----------------A----------------------------------A-------GATTT-TCCCCATA....................................................1911.0011000
..........................................................................................................GTCA----------------A----------------------------------A-------GATTT-TCCCCATAGT..................................................2111.0011000
.........................................................................................................AGTCA----------------A----------------------------------A-------GATTT-TCCCCA......................................................1811.0011000
.........................GTAAA--GCCACTAATCCAAAGGA..........................................................................................................................................................................................2211.0011000
...................................................................................................TT----AGTCA----------------A----------------------------------A-------GATTT-TCCCCATAGAAA................................................2611.0010010
...........................................................................................................TCA----------------A----------------------------------A-------GATTT-TCCCCATAG...................................................1911.0011000
...................................................................................................TT----AGTCA----------------A----------------------------------A-------GATTT-TCCCCATAGAT.................................................2511.0011000
....................................................................................................T----AGTCA----------------A----------------------------------A-------GATTT-TCCCCATAT...................................................2211.0011000
........................AGTAAA--GCCACTAATCCAAAGG...........................................................................................................................................................................................2211.0011000
...................................................................................................TT----AGTCA----------------A----------------------------------A-------GATTT-TCCCCATAAT..................................................2411.0010100
...................................................................................................TT----AGTCA----------------A----------------------------------A-------GATTT-TCCCCATAGTG.................................................2511.0011000
....................................................................................................T----AGTCA----------------A----------------------------------A-------GATTT-TCCCCATAGG..................................................2311.0011000
....................................................................................................T----AGTCA----------------A----------------------------------A-------GATTT-TCCCCATAGC..................................................2311.0011000
...................................................................................................TT----AGTCA----------------A----------------------------------A-------GATTT-TCCCCATC....................................................2211.0011000
....................................................................................................T----AGTCA----------------A----------------------------------A-------GATTT-TCCCC.......................................................1811.0011000
....................................................GTGGGTAGA-ACTTTGATTAATATT..............................................................................................................................................................2411.0010100
...........................................................GA-ACTTTGATTAATATTGCTTG----AG-------AAT.........................................................................................................................................2711.0010100
....................................................................................................T----AGTCA----------------A----------------------------------A-------GATTT-TCCCCAT.....................................................2011.0011000
......................................................GGGTAGA-ACTTTGATTAATAT...............................................................................................................................................................2111.0010001
...........................................................................TTGCTTG----AG-------AATATT----AGTCA----------------A----------------------------------A-------GA................................................................2411.0010100
.........................................................................................................AGTCA----------------A----------------------------------A-------GATTT-TCCCCATAGTA.................................................2311.0010010
droSim2
GGCAGCAGCATTTGTCTCTTTGATAGTAAA--GCCACTAATCCAAAAGAACGGTGGGTAGA-ACTTTGATTAATATTGCTTG----AG-------AATATT----AGTCA----------------A----------------------------------A-------GATTT-TCCCCATAGATTTATCAATTTTGGCAATGTACAAACGCATCCGGTGGTGGAGAAAGGACASizeHit CountTotal NormTotalM023

Head		M024

Male-body		M025

Embryo		M053

Female-body		O001

Testis		O002

Head		SRR553485

Ovary		SRR553486

Ovary		SRR553487

Ovary		SRR553488

Ovary		SRR618934

Ovary		V044

Embryo		SRR902008

Ovary		SRR902009

Testis		SRR1275487

Male larvae		SRR1275485

Male prepupae		SRR1275483

Male prepupae
....................................................GTGGGTAGA-ACTTTGATTAAT.................................................................................................................................................................21113368.00133682536942178681226420531831125670290661057000
....................................................GTGGGTAGA-ACTTTGATTAATA................................................................................................................................................................2219601.0096016533354424215838403066546259225138527000
...................................................................................................TT----AGTCA----------------A----------------------------------A-------GATTT-TCCCCATAG...................................................2318427.008427407912956662441609548372366190122710533141000
...................................................................................................TT----AGTCA----------------A----------------------------------A-------GATTT-TCCCCATA....................................................2213904.0039047114538048107210818706133118115000
...................................................................................................TT----AGTCA----------------A----------------------------------A-------GATTT-TCCCCATAGA..................................................2412122.002122618182277906373832432203000
....................................................GTGGGTAGA-ACTTTGATTAATAAA..............................................................................................................................................................2411591.001591003300581438356164911917000
....................................................GTGGGTAGA-ACTTTGATTAATAA...............................................................................................................................................................2311256.0012562271004573932571226207000
....................................................GTGGGTAGA-ACTTTGATTAA..................................................................................................................................................................2011185.0011858627782443441342132648201000
....................................................GTGGGTAGA-ACTTTGATT....................................................................................................................................................................181545.005453254727122310136693100000
...................................................................................................TT----AGTCA----------------A----------------------------------A-------GATTT-TCCCCATAGT..................................................241530.005301341369001051006339832669000
....................................................GTGGGTAGA-ACTTTGATTAATAAAA.............................................................................................................................................................251402.00402000100152103923510108000
...................................................................................................TT----AGTCA----------------A----------------------------------A-------GATTT-TCCCCAT.....................................................211375.0037513011292753371067182603000
....................................................GTGGGTAGA-ACTTTGATTAATAT...............................................................................................................................................................231236.002369191324857817104211000
...................................................................................................TT----AGTCA----------------A----------------------------------A-------GATTT-TCCCCATAA...................................................231229.002290005001734102630215000
...................................................................................................TT----AGTCA----------------A----------------------------------A-------GATTT-TCCCCA......................................................201217.00217466381673635825000000
....................................................GTGGGTAGA-ACTTTGATTA...................................................................................................................................................................191213.00213178021328565220125000000
...................................................................................................TT----AGTCA----------------A----------------------------------A-------GATTT-TCCCC.......................................................19180.00802122372531205000000
...................................................................................................TT----AGTCA----------------A----------------------------------A-------GATTT-TCCC........................................................18179.00791100393401012000000
.....................................................TGGGTAGA-ACTTTGATTAAT.................................................................................................................................................................20165.0065293470075730000000
...................................................................................................TT----AGTCA----------------A----------------------------------A-------GATTT-TCCCCATAGAAA................................................26158.005800020018111791000000
...................................................................................................TT----AGTCA----------------A----------------------------------A-------GATTT-TCCCCATAGTAA................................................26157.00570001006326200001000
....................................................GTGGGTAGA-ACTTTGATTAAA.................................................................................................................................................................21156.00563200001817861100000
....................................................................................................T----AGTCA----------------A----------------------------------A-------GATTT-TCCCCATAG...................................................22156.0056000502300001000000
...................................................................................................TT----AGTCA----------------A----------------------------------A-------GATTT-TCCCCATAGTA.................................................25151.00510001009622120100000
...................................................................................................TT----AGTCA----------------A----------------------------------A-------GATTT-TCCCCATAGAA.................................................25150.005000000010141591001000
....................................................GTGGGTAGA-ACTTTGATTAATT................................................................................................................................................................22149.004981102001210230100000
...................................................................................................TT----AGTCA----------------A----------------------------------A-------GATTT-TCCCCATAGC..................................................24136.003640200065736300000
...................................................................................................TT----AGTCA----------------A----------------------------------A-------GATTT-TCCCCATAC...................................................23125.002511230041913000000
.....................................................TGGGTAGA-ACTTTGATTAATA................................................................................................................................................................21124.002451610054110000000
....................................................GTGGGTAGA-ACTTTGATTAAC.................................................................................................................................................................21121.0021153000001002000000
..................................................................................................ATT----AGTCA----------------A----------------------------------A-------GATTT-TCCCCATAG...................................................24120.002000100081251002000
...................................................................................................TT----AGTCA----------------A----------------------------------A-------GATTT-TCCCCATACC..................................................24117.001700310001533100000
......................................................GGGTAGA-ACTTTGATTAAT.................................................................................................................................................................19116.0016122000000101000000
....................................................GTGGGTAGA-ACTTTGATTAATATA..............................................................................................................................................................24115.001500000074400000000
......................................................GGGTAGA-ACTTTGATTAATA................................................................................................................................................................20112.001251400001001000000
..................................................................................................ATT----AGTCA----------------A----------------------------------A-------GATTT-TCCCCATA....................................................23110.001000001025100001000
...................................................................................................TT----AGTCA----------------A----------------------------------A-------GATTT-TCCCCATAT...................................................23110.001000010022210101000
..................................................................................................ATT----AGTCA----------------A----------------------------------A-------GATTT-TCCCCATAGA..................................................2519.00900020024100000000
....................................................GTGGGTAGA-ACTTTGATTAAG.................................................................................................................................................................2119.00910010043000000000
....................................................GTGGGTAGA-ACTTTGATTT...................................................................................................................................................................1918.00851010001000000000
...................................................................................................TT----AGTCA----------------A----------------------------------A-------GATTT-TCCCCATAGAAAA...............................................2717.00700010013100001000
..................................................................................................ATT----AGTCA----------------A----------------------------------A-------GATTT-TCCCC.......................................................2017.00721021000001000000
....................................................GTGGGTAGA-ACTTTGA......................................................................................................................................................................1617.00700000001105000000
....................................................GTGGGTAGA-ACTTTGATTAATAG...............................................................................................................................................................2317.00710000041100000000
....................................................GTGGGTAGA-ACTTTGATTAATC................................................................................................................................................................2217.00701000012111000000
....................................................GTGGGTAGA-ACTTTGATTAATATAA.............................................................................................................................................................2516.00600000012210000000
....................................................................................................T----AGTCA----------------A----------------------------------A-------GATTT-TCCCCATA....................................................2116.00600031010001000000
...................................................................................................TT----AGTCA----------------A----------------------------------A-------GATTT-TCC.........................................................1716.00600000020112000000
..................................................................................................ATT----AGTCA----------------A----------------------------------A-------GATTT-TCCCCAT.....................................................2216.00600010021101000000
...................................................................................................TT----AGTCA----------------A----------------------------------A-------GATTT-TCCCCATT....................................................2216.00600010011201000000
...................................................................................................TT----AGTCA----------------A----------------------------------A-------GATTT-TCCCCATACT..................................................2416.00600000023010000000
....................................................GTGGGTAGA-ACTTTGATTAATAC...............................................................................................................................................................2316.00600300012000000000
.......................................................GGTAGA-ACTTTGATTAAT.................................................................................................................................................................1815.00520000000003000000
.............................................................................................................A----------------A----------------------------------A-------GATTT-TCCCCATAGT..................................................1815.00500000000005000000
...................................................................................................TT----AGTCA----------------A----------------------------------A-------GATTT-TCCCCATAGG..................................................2415.00520000001011000000
....................................................GTGGGTAGA-ACTTTGATTAATATAAA............................................................................................................................................................2614.00400000010300000000
............................................................................................................CA----------------A----------------------------------A-------GATTT-TCCCCATAG...................................................1814.00400000000004000000
....................................................................................................T----AGTCA----------------A----------------------------------A-------GATTT-TCCCCATAGA..................................................2314.00400010001200000000
........................................................GTAGA-ACTTTGATTAAT.................................................................................................................................................................1714.00400000000103000000
...................................................................................................TT----AGTCA----------------A----------------------------------A-------GATTT-TCCCCATACCA.................................................2514.00400000011110000000
........................................................GTAGA-ACTTTGATTAATA................................................................................................................................................................1814.00410200001000000000
....................................................GTGGGTAGA-ACTTTGATTAATATT..............................................................................................................................................................2414.00403010000000000000
..................................................................................................ATT----AGTCA----------------A----------------------------------A-------GATTT-TCCCCA......................................................2114.00410001101000000000
....................................................GTGGGTAGA-ACTTTGAT.....................................................................................................................................................................1714.00400000001003000000
....................................................GTGGGTAGA-ACTTTGATTAATAAAC.............................................................................................................................................................2514.00400000040000000000
....................................................GTGGGTAGA-ACTTTG.......................................................................................................................................................................1523.00600000030003000000
.....................................................TGGGTAGA-ACTTTGATTAATAAA..............................................................................................................................................................2313.00300000001110000000
.....................................................TGGGTAGA-ACTTTGATTAA..................................................................................................................................................................1913.00310010001000000000
....................................................GTGGGTAGA-ACTTTGATC....................................................................................................................................................................1813.00330000000000000000
....................................................................................................T----AGTCA----------------A----------------------------------A-------GATTT-TCCCCATAGT..................................................2313.00300030000000000000
.....................................................TGGGTAGA-ACTTTGATTAATAA...............................................................................................................................................................2213.00300000001200000000
...................................................................................................TT----AGTCA----------------A----------------------------------A-------GATTT-TCCCCATAGCA.................................................2513.00300000001110000000
.............................................................................................................A----------------A----------------------------------A-------GATTT-TCCCCATAG...................................................1713.00300000000003000000
...........................................................................................................TCA----------------A----------------------------------A-------GATTT-TCCCCATAG...................................................1913.00300010000101000000
..........................................................................................................GTCA----------------A----------------------------------A-------GATTT-TCCCCATAGT..................................................2112.00200020000000000000
....................................................GTGGGTAGA-ACTTTGATTAATAAG..............................................................................................................................................................2412.00200000010100000000
..................................................................................................ATT----AGTCA----------------A----------------------------------A-------GATTT-TCCCCATAA...................................................2412.00200000010100000000
.....................................................TGGGTAGA-ACTTTGATTAATAT...............................................................................................................................................................2212.00200100010000000000
....................................................GTGGGTAGA-ACTTTGATTAATG................................................................................................................................................................2212.00210000001000000000
....................................................GTGGGTAGA-ACTTTGATTAATACA..............................................................................................................................................................2412.00200000011000000000
..................................................................................................ATT----AGTCA----------------A----------------------------------A-------GATTT-TCCC........................................................1912.00200001000010000000
...................................................................................................TT----AGTCA----------------A----------------------------------A-------GATTT-TCCCCG......................................................2012.00200200000000000000
....................................................GTGGGTAGA-ACTTTGATTAATAGA..............................................................................................................................................................2412.00200000020000000000
....................................................................................................T----AGTCA----------------A----------------------------------A-------GATTT-TCCCCAT.....................................................2012.00200011000000000000
....................................................GTGGGTAGA-ACTTTGATTAATATTGC............................................................................................................................................................2612.00200000001100000000
......................................................GGGTAGA-ACTTTGATTAA..................................................................................................................................................................1812.00200000001001000000
....................................................................................................T----AGTCA----------------A----------------------------------A-------GATTT-TCCCCA......................................................1912.00200001100000000000
.......................................................GGTAGA-ACTTTGATTAATA................................................................................................................................................................1912.00210000000001000000
....................................................GTGGGTAGA-ACTTTGATTAATACAA.............................................................................................................................................................2512.00200000020000000000
....................................................GTGGGTAGA-ACTTTGATTAATATTGCT...........................................................................................................................................................2712.00200000020000000000
.....................................................TGGGTAGA-ACTTTGATTA...................................................................................................................................................................1812.00210000100000000000
.........................................................TAGA-ACTTTGATTAATA................................................................................................................................................................1712.00200000000002000000
..................................................................................................ATT----AGTCA----------------A----------------------------------A-------GATTT-TCCCCATAGT..................................................2512.00200000000001001000
....................................................GTGGGTAGA-ACTTTGATTAAAT................................................................................................................................................................2212.00211000000000000000
.........................................................................................................AGTCA----------------A----------------------------------A-------GATTT-TCCCCATAG...................................................2112.00200010100000000000
....................................................GTGGGTAGA-ACTTTGATTAATTA...............................................................................................................................................................2312.00200000010100000000
dm3
GGCAGTAGCGTTTGTCTATTTGATAGTAAA--GCCACAAATCCAAAAGAACGGTGGGTAGA-ACTTTGATTAATATTGCTTG---AAA-------AATATT----AGTCA----------------A----------------------------------A-------GATTT-TCCCCATAGATTTATCAATTTCGGCAATGTACAAACGCATCCGGTGGTGGAGAAAGGGCASizeHit CountTotal NormTotalGSM154618

Ovary		GSM154620

Ovary		GSM154621

Ovary		GSM154622

Ovary		GSM180328

Head		GSM180329

Mixed-body		GSM180330

Embryo		GSM180331

Embryo		GSM180332

Embryo		GSM180333

Embryo		GSM180334

Larvae		GSM180335

Disc		GSM180336

Pupae		GSM180337

S2		GSM239041

Head		GSM239050

Head		GSM239051

S2		GSM239052

S2		GSM246084

Head		GSM266765

S2		GSM280082

Ovary		GSM280083

Ovary		GSM280084

Ovary		GSM280085

Testis		GSM280086

Ovary		GSM280087

S2-NP		GSM280088

S2-NP		GSM312995

Head		GSM313160

Head		GSM313161

Head		GSM313162

Head		GSM313163

Head		GSM313164

Head		GSM313165

Head		GSM343287

Embryo		GSM379050

Ovary		GSM379051

Ovary		GSM379052

Ovary		GSM379053

Ovary		GSM379054

Ovary		GSM379055

Ovary		GSM379056

Ovary		GSM379057

Ovary		GSM379058

Ovary		GSM379059

Ovary		GSM379060

Ovary		GSM379061

Ovary		GSM379062

Ovary		GSM379063

Ovary		GSM379064

Ovary		GSM379065

Ovary		GSM379066

Ovary		GSM379067

Ovary		GSM424739

S2		GSM424740

S2		GSM424741

S2		GSM467729

Female-body		GSM467730

Female-body		GSM467731

Female-body		M002

CS		M003

Male-body		M004

Male-body		M005

ML-DmD32		M006

ML-DmD32		M029

OSC		M030

OSC		M031

OSC		M032

S2-R+		M033

S2-R+		M034

S2-R+		M035

S2-R+		M036

S2-R+		M037

S2-R+		M038

S2-R+		M039

S2-R+		M048

S2-R+		OSS2

OSS		OSS6

OSS		OSS7

OSS		OSS8

OSS		S1

Head		S10

Embryo		S11

Embryo		S12

Embryo		S13

Embryo		S14

Embryo		S15

S2-GMR		S16

Kc		S17

Larvae		S18

Larvae		S19

Pupae		S2

Head		S20

Pupae		S21

Disc		S22

Head		S23

Female-body		S24

Male-body		S25

Larvae		S26

Larvae		S27

Pupae		S28

Pupae		S29

Head		S3

Male-body		S30

S2-GMR		S31

S2		S32

S2		S33

Kc		S34

Kc		S35

Kc		S4

Female-body		S5

Disc		S6

Embryo		S7

Embryo		S8

S2		S9

Embryo		SRR001337

Head		SRR001338

Head		SRR001339

Head		SRR001340

Head		SRR001341

Head		SRR001342

Head		SRR001343

Head		SRR001344

Head		SRR001345

Head		SRR001346

Head		SRR001347

Head		SRR001348

Head		SRR001349

Head		SRR001664

Head		SRR010951

Ovary		SRR010952

Ovary		SRR010953

Ovary		SRR010954

Ovary		SRR010955

Ovary		SRR010956

Ovary		SRR010957

Ovary		SRR010958

Ovary		SRR010959

Ovary		SRR010960

Ovary		SRR014268

Embryo		SRR014269

Embryo		SRR014270

Embryo		SRR014271

Embryo		SRR014272

Embryo		SRR014273

Ovary		SRR014274

Ovary		SRR014275

Ovary		SRR014276

Ovary		SRR014277

Ovary		SRR014278

Ovary		SRR014279

Ovary		SRR014280

Ovary		SRR014281

Ovary		SRR014282

Ovary		SRR023197

S2		SRR023399

S2		SRR023400

S2		SRR023402

S2		SRR023407

S2		SRR029028

S2		SRR029029

S2		SRR029030

S2		SRR029031

S2		SRR029032

S2		SRR029033

S2		SRR029608

Head		SRR029633

Head		SRR030145

gb3		SRR031692

Head		SRR031693

Head		SRR031694

Head		SRR031696

Head		SRR031697

Head		SRR031698

Head		SRR031699

Head		SRR031700

Head		SRR031701

Head		SRR031702

Head		SRR031703

Head		SRR031704

Head		SRR032092

S2		SRR032093

S2		SRR032094

S2		SRR032095

S2-NP		SRR032096

S2-NP		SRR032152

Head		SRR060643

Testis		SRR060644

Ovary		SRR060645

Testis		SRR060646

Ovary		SRR060647

Ovary		SRR060648

Ovary		SRR060649

Ovary		SRR060650

Testis		SRR060651

Ovary		SRR060652

Testis		SRR060653

Ovary		SRR065151

Ovary		SRR065152

Ovary		SRR065153

Ovary		SRR065154

Ovary		SRR065155

Ovary		SRR065800

Ovary		SRR065801

Ovary		SRR065802

Ovary		SRR065803

Ovary		SRR065804

Ovary		SRR065805

Ovary		SRR065806

Ovary		SRR065807

Ovary		SRR097865

S2-NP		SRR097866

S2-NP		SRR097867

S2-NP		SRR298536

Ovary		SRR298537

Ovary		SRR298711

Ovary		SRR298712

Ovary		SRR317110

Ovary		SRR317111

Ovary		SRR317112

Ovary		SRR317113

Ovary		SRR317114

Ovary		SRR317115

Ovary		SRR317116

Ovary		SRR317117

Ovary		SRR341115

S2		SRR341116

S2		SRR341117

S2		SRR341118

S2		SRR351332

Mixed-body		SRR351333

Mixed-body		T004

OSC		T005

CME-L1		V001

Embryo		V002

Embryo		V003

S2		V006

Female-body		V007

Head		V008

S2		V009

CME-L1		V010

ML-DmD20-C5		V011

Sg4		V012

Male-body		V013

Head		V014

DTT		V015

DreRFHV		V018

Kc167		V019

GM2		V020

S2-R+		V021

ML-DmD21		V022

ML-DmD32		V023

Head		V024

Kc167		V025

S2-R+		V026

1182-2H		V027

ML-DmD21		V028

CME-W1-Cl.8+		V029

ML-DmD9		V030

ML-DmD8		V031

GM2		V032

S1		V033

CME-W1-Cl.8+		V034

ML-DmD16-C3		V035

ML-DmD32		V036

ML-DmD20-C5		V037

S2		V038

S2		V063

Ovary		V0632

Ovary		V064

Ovary		V0642

Ovary		V065

Ovary		V0652

Ovary		V066

Ovary		V0662

Ovary		V067

S2-NP		V073

mbn2		V074

S3		V075

ML-DmBG1-C1		V076

ML-DmBG3-C2		V077

Head		V078

Head		V079

Head		V080

Head		V081

Embryo		V082

Embryo		V083

Male-body		V084

Female-body		V085

CME-W2		V086

Female-body		V088

Ovary		V0882

Ovary		V089

Ovary		V0892

Ovary		V090

Male-body		V091

fGS/OSS		V092

Male-body		V093

Male-body		V094

S2-R+		V095

S2-R+		V096

Ovary		V097

Ovary		V098

Ovary		V125

ML-DmD9		V126

CME-L1		V127

G2		V128

S3		V129

ML-DmBG1-C1		V130

ML-DmBG3-C2		V131

ML-DmD16-C3		V132

ML-DmD32		V133

Sg4		V134

ML-DmD8		V135

CME-W2		V136

Male-body		V137

Head		V138

Male-body		V139

Female-body		V140

Female-body		V141

Female-body		V142

Female-body		V144

OSC		V145

S2		V146

S1		V147

1182-2H		V148

mbn2		GSM1528798

follicle cells
...................................................................................................TT----AGTCA----------------A----------------------------------A-------GATTT-TCCCCATAG...................................................23168045.006804500006216241097910030021138233000183395036247854594314764266912114641151283281149215206773900011000000000000000000232320221788103438688211398148503602471602065170179111251823383418613593510227921683832006434124239740518370000002211411518928615658552412101861338594264199937331861752539588428536033212379534523754124163322881911183115556288941736005044831723000001886700010030310811265725281237519052296459516072246208217311716910003023093774811633234763119217401916138477159686026104522664352132989149261448526155902789584368546028953424070208328342834035335110955287917352960396972622617124644862170283478478634116612819315651161245157893541251122117913483326240
....................................................GTGGGTAGA-ACTTTGATTAAT.................................................................................................................................................................21151013.005101300001610001020020002042521402845593730627936010918123483612125116147218253511120580530000000000000000008296509318231370112372866833420160406020218228513294449338145142154718126219084481510232343352220212030013314354123256943355113736735217453950795001327003253380263126761064163463054462871770519012301434123079312313966121017111380271135132043014200992628935616316343930532667152234714322223616775186230099211640177643514136197519069383640234165702811362329440141917078562371283402393976042621714109666634821213712190471896112461659418113635124312540142813985941283926841242774711132954128217293112338901747132318422518179657319355767354275832169411007790
....................................................GTGGGTAGA-ACTTTGATTAATA................................................................................................................................................................22138185.00381850000612011211100001092280027539382948916745318773711415312152019532243327206240902000000000000000007151090113615920154111339112141922302370771251373141841110471721330014011281102892313860061003300107933687036655225521138826293854563747521607512101131134423195327100441341711933513290764662941191162930511044740460601344005100161104354132746372626833063280131415125391462278920012721074993161151653849769553955693533657549178125723531871323185865340281318882416999697103557593219517488262194249310639774585209928391468225131681551462662071246881549827123833852516814981127274488362502314162962256202594115987861712095480
...................................................................................................TT----AGTCA----------------A----------------------------------A-------GATTT-TCCCCATAGT..................................................24129181.00291810000000000000400010041536000310000000135485410229309733152141495825160900000000000000000000065940440491713118308614140091772412745150154305418180401119853457422600000201130664102124973013095143594674177137430100024044530273902620635133930434430572411040716919112920398101552100000364500000015721155977618113452092385821791942552121130000871151830401213341762511321719692228243416834146225214412833109171942620315617914252651735407527105494594678931511115221225617536113681921025859105141428270935013318674138911223035189131152943243316762662524430012143156710
...................................................................................................TT----AGTCA----------------A----------------------------------A-------GATTT-TCCCCAT.....................................................2118220.00822000000000000000000000010020030327700013140025006023852000000100000000000000000603100700180102001001102601411700001000003000003311411210000100000021523812414673631120001040320092308103727381154005201126282980002017110000001000000130221118134723244413651901230000100393471184134273305023562447286176303114556295241804533624288815140208311512342232681312245153101880306211824187111445170181500
...................................................................................................TT----AGTCA----------------A----------------------------------A-------GATTT-TCCCCATA....................................................2216394.0063940000100000000100000051069002077292900683153716162293410242445000000000000000000000006221330005170201161537500619806152200303221407601069342281221800010000006232816801613101311411138110005065056243102800123283071733780341024454758290002411800000001100000073420866336294941134462001192531911181000521105233176910419155817174662211241503742461252291881063382332211643041711193027231911232323382296385219247172164155133231107110182114441412180813371340
....................................................GTGGGTAGA-ACTTTGATT....................................................................................................................................................................1814573.0045730000000000000001000002000002653202943021000000021100000000000000000000000000000211200000000001000100000216100100200101311160304000181044230010900000100002221030000001371121000100341040161038355921710112336140001916210341001401602020000000000505912535015131016273000000125939011101342151431291034118764213326112183430717281425030152008821748642108255004511353243543751073041010001103776774192927447229206250
....................................................GTGGGTAGA-ACTTTGATTAA..................................................................................................................................................................2013413.0034130000220001000000010000100028428515110191200001300100203000008510000000000000000010891020000047501860417570034691811362000110201610203210479734902000001000010011610001102540000600059109041149176131544106551541618920046841541005010001000010000007201014765618681322221000100719610041901024071011345214001224222201055318529191321031110710013716417208332721221415295935103325495366178494801813533122019217315147520
....................................................GTGGGTAGA-ACTTTGATTA...................................................................................................................................................................1911646.001646000000000000000000001000040213320260100000000000001000000006100000000000000000020001000002100520032500022211014040100320110000010023131251020000001000000023001000100316000002754014635313821141544871420002321140005060000000200010001010474111230100000000000414200026022210224221031053182014230271223215203675074981023111401491882430936111031012012490101911212481511315399290
...................................................................................................TT----AGTCA----------------A----------------------------------A-------GATTT-TCCCCATAGA..................................................2411295.001295000000000000000000000000000011880001111000000000300000000000000000000000000001000100510010110031100000034310000100102402035241152127000000000002301121101000000100200100111308103111111711200000081020000000000000000000000000101192973752208125100802000103000000013002004110121000000001011110342132501100001332111112121030000111355000000010007212010326150
...................................................................................................TT----AGTCA----------------A----------------------------------A-------GATTT-TCCCCATAGATC................................................2611001.0010010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000809192000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................GTGGGTAGA-ACTTTGATTAATAT...............................................................................................................................................................231933.00933000010000000000000000010002100000010000000211100012000007200000000000000000000110000010001200022100106000100000010001200012205033000000000001003122310030121100000000130922455100541000001072044000011020300000000000700032020312142816314009220020051130043022011540002010160111011332058353172114331612191602421572252482492232122143225715110301015100136122272521260
...................................................................................................TT----AGTCA----------------A----------------------------------A-------GATTT-TCCCCATT....................................................221676.00676000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000100000000000000000100000010000100000000000040000020010000000000911800002060000000000000000000001300311060000000000000101000010000001000000037000010000100120100000000010000001000000000401000000000112000025140100
..................................................................................................ATT----AGTCA----------------A----------------------------------A-------GATTT-TCCCCATAG...................................................241643.00643000000000000000000000100000100000000010001100010010000000000000000000000000000000502020000120001000112001200310000000000000100001000000001001100012000100000000000000430201071401000000000333100000100000001000000000200178242322817272410110000000100011000100001000010000301910111421336442829101566881110058341000013342000001200008202120570130
....................................................GTGGGTAGA-ACTTTGATTAATAA...............................................................................................................................................................231489.004890000000000000000000000000000000000110000101100001110000000000000000000000000000102000100101000001000000000000000000000000000010220000000100001000000000001011000000002202000520001400000020030000005000000010000000001000331117195610320210221000001021100101001001100100001001000322014102150222011611331030515216010400122132106110030000330002169350
...................................................................................................TT----AGTCA----------------A----------------------------------A-------GATTT-TCCCCATAGC..................................................241449.004490000000000000000000003000000000000001100021001102230000000000000000000000000010000001010000000000001330201000000000002010002051100000001000014001224003044000000000000000000100000000000002300000001100000020000000002310263782888350010100100201100210110023010000100200300022074201642501101312220000028621001120150230020000100111353004212110
...................................................................................................TT----AGTCA----------------A----------------------------------A-------GATTT-TCCCCATAT...................................................231446.00446000000000000000000000300000000000000101007100312002110000000000000000000000000000130000010700000000000002410000000101100000001408100000000000001100131130101113072021006704000200100000010001824710007016000000110000000000000211222035500200000002022113001000161801400300141312100732161803120211000000004210012102011100000100002000100058260
...................................................................................................TT----AGTCA----------------A----------------------------------A-------GATTT-TCCCCA......................................................201364.0036400000000000000000000011000002100001600000002000000000100000000000000000000000002100000030000000000000900010000001005000000020015020002000000000001021000000000000000000600000010202200000002210000100000000010000000000000244030605100100000000020000001000010010000003220000004160802100000000000000000000000010000001000000122210002147000
..................................................................................................ATT----AGTCA----------------A----------------------------------A-------GATTT-TCCCCATAGT..................................................251353.003530000000000000000000001000000000000000000001001000100000000000000000000000000000003000000000000000000000011000000000000000002010000000000000000000111010000000002000000002000101000300000003120000002000000000000000001010168445015100000001100011000001000100100000004004000014270371161520030123010102721012110724185552024121014571044051411140
....................................................GTGGGTAGA-ACTTTGATTAATAAA..............................................................................................................................................................241347.003470000000000000000000000000000000000000000000100000000000000000000000000000000000006000200000000010000000001030010000000000000000000000000000000030100101050000000000000000000000000100000001010000005000000600000000000000285109508141800000000000100000000000000100000000000100011315111080000000109100112621900000072143000000000000011101021110
..................................................................................................ATT----AGTCA----------------A----------------------------------A-------GATTT-TCCCCAT.....................................................221339.003390000000000000000000000000000100000000101000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000040010000001000000000000000002010100000000000112000000000000000000001000000311390370000000000010100000000000000000100012011000217323318050701021130010203333110012025202010200100021310041254140
...................................................................................................TT----AGTCA----------------A----------------------------------A-------GATTT-TCCCCATAA...................................................231331.003310000012110020000000000100000000000002101001002000100100000000000000000000000000006000150100000000001000110040011000000000100010020000000000010020120100100000000000002100000302010200000002111020006000000000000000000010012625871911519300110000000000001000000100001000002110000215142190601100000020000002330000107311000000300100100000021130
....................................................GTGGGTAGA-ACTTTGATTAATT................................................................................................................................................................221298.002980000000000000000000000000000000000010100000000000000100000000000000000000000000100000000200000000000000000000010003001000000000000000000000000000000000000002000000001300100010105000002002000000001000000000000001000121222224032001420000020200001010011301011020110041100710070212101403300101422510413281000804013820517131202850172011100
...................................................................................................TT----AGTCA----------------A----------------------------------A-------GATTT-TCCCCATAGAA.................................................251182.00182000000000000000000000000000000000000000000100000000000000000000000000000000010000000000000000000000000021100000100300000000002100000000000000200000100000000000000000010000020101000000000100000000000000000000000000000028103437321316100100000000000000000000010000100000000000011100010020000001000000000000000100200000100000010000001000
....................................................GTGGGTAGA-ACTTTGATTT...................................................................................................................................................................192181.503630000000000000000000000000000000000000000000010000000000000000000000000000000020000000000001000001000000000000000000000000000010440000000000000000000010000000000000001310111011210319100002000000000001000000000000000001002010001000000100000003000011503100000000000102110100000200000310061810002014000021352001060010011010131029327521016070
...................................................................................................TT----AGTCA----------------A----------------------------------A-------GATTT-TCCCCATAC...................................................231180.00180000000000000000000000000000000000002000003010000010100000000000000000000000001000000010000000000000000000000000200100000000002010000000000001030013000030100000000000200200100000001001001011000010000000000000000000001084753226301100000001110000101010120201000001012000212052103121000001001000004413000000701000000110000100111015010
....................................................GTGGGTAGA-ACTTTGATTAATC................................................................................................................................................................221176.00176000000000000000000000010000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000001100000002231000000000000100000020000011000000000110000000000100000000000000000000000000000000100000000002001000032000000331200000000010001000000010000070226030000010030002201923315740150212201000220000000100033200
....................................................GTGGGTAGA-ACTTTGATTAATATC..............................................................................................................................................................241160.00160000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000011248000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
....................................................GTGGGTAGA-ACTTTGATTAAA.................................................................................................................................................................211159.001590000000000000000000000000000000000000000000000000000000000000000000000000000000110000010200400000000060000000000000000000001030000000000000000000000000000000000000002900002102032210000050000000002000000010000000000000211004020000000000001000000000010000000010020000001300040002003267421100200143021002263000200000001030021019210
.........................................................................................................AGTCA----------------A----------------------------------A-------GATTT-TCCCCATAGT..................................................221133.0013300000000000000000000000000000000000100000000000000000000000000000000000000000000000000100010000000000000000000000000000000000000000000000000200010000100010000000000001000100000000000920000000001010000000000000000000001011101000000000000000001000100002001000000001000021012808050000000011000000024000000023002000020000302312052190
...................................................................................................TT----AGTCA----------------A----------------------------------A-------GATTT-TCCCC.......................................................191120.001200000000000000000000000000000010210000000000000000000000000000000000000000000000000000000000001000000000100000000000030000000012400008000000000000000000000000000000000140100121000002020002120000020000000000000000000000021001000000000000000000000000000000001000006001010052548040100000000000101010000010000000000000000000100019000
...................................................................................................TT----AGTCA----------------A----------------------------------A-------GATTT-TCCCCATAGAAA................................................261111.0011100000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000010000000000000000000000010000010000000000000000100000000000000000000000000001011104172864000000000000000000000000010000000000100000010101020000000001000000001000000000000000100101000100000030
..................................................................................................ATT----AGTCA----------------A----------------------------------A-------GATTT-TCCCCATA....................................................231111.001110000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000001000000000000000000000110101000000000000001201000000000000000000000000000000000000000000000000347411232000000000000011000000001010000001001101010060006120201111001000001201000001000000000011000201111017480
...................................................................................................TT----AGTCA----------------A----------------------------------A-------GATTT-TCCCCATAGG..................................................241107.0010700000000000000000000000000000000000000000010000010000010000000000000000000001000000000000000000000000000110000000000000000000000100000000000001100200000000000000000022010000000411000000100100001000000000000000000000001102010000000000000000000000000000000000000000100023416151100201112000000001164010000000010001011000000100002160
....................................................................................................T----AGTCA----------------A----------------------------------A-------GATTT-TCCCCATAGT..................................................231105.0010500001000000000000000000000000000000000000010000000010000000000000000000000000000000000100000000000000003010000000000000000000000000000000000000000000000000000000000000000000000000000000101000000000000000000000030002000201100000000000000000000000000000000000000010000014052811400000011010000013010000251012102000000000002012005090
...................................................................................................TT----AGTCA----------------A----------------------------------A-------GATTT-TCCCCATAGTA.................................................251102.001020000000000000100000000000000000000000000000000000100000000000000000000000000000002010000000000000000000010000000000000000020000100000000000002000100100000000000000000101000100000100000000110000000000000000000000000000930165111000000000000000000000000000001000010110001402270802000001020100002220000001000000000000000000100001040
...................................................................................................TT----AGTCA----------------A----------------------------------A-------GATTT-TCCCCATAGTAA................................................26189.00890000000000000000000000000000000000000000020000000000000000000000000000000000000000000100000000000000000000000000002000000000000000000000000001000000002030000000000000000000000000000000000000000000000000100000000000000843172641000000000000000010000000000000000000011011301015140000000002000000003000000112000000000000000000002010
....................................................................................................T----AGTCA----------------A----------------------------------A-------GATTT-TCCCCATAG...................................................22185.0085000000000000000000000100000000000000000000000000200000000000000000000000000000000000001000210000000024000100000000000000000000013000000000000000001000000300000200000210000020100000000000011000000000000000000000000000021218004000000000000000000000000010000000000201000070116060000000100000100201000000200100000000000000000000020
...................................................................................................TT----AGTCA----------------A----------------------------------A-------GATTT-TCCCCATATT..................................................24185.0085000000000000000000000000000000000000000006000100001000000000000000000000000000000020001000400000000000001000000000000000000103000000000000000021032000000100000100000000000000000000000000007000020300000010000000001000001002000200300001001000100001000110302000001000000112200000100000001000000012000000000010000000000100200006000
...................................................................................................TT----AGTCA----------------A----------------------------------A-------GATTT-TCCCCATTT...................................................23184.0084000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000020000100000000000000301000004060000000000000000000000140002020001000000000000000000100000000000070000000000000000000000000000000000000000000000000000000000000129000
....................................................GTGGGTAGA-ACTTTGATTAAC.................................................................................................................................................................21177.00770000000000000000000000000010000000000000000000000100000000000000000000000000000000000000000000000000000000000100001000010000000200000000000000000000000000001000000002001000010011200000010000000000000000000000000000000000000000000000000001000011000000100000000000010001110103000310031110000130042201301100201000000000300010002110
.....................................................TGGGTAGA-ACTTTGATTAAT.................................................................................................................................................................20174.007400000000000000000000001000000000000000000000000000000000000000000000000000000000000000000100000000000000020001100000000000000000000000000000000000000002000000000000000001001120100013000000000000100000000000000000000000010210101000000000001000000000010000000000120011100100404001110000010000000000000000001002000000000000100031110
....................................................GTGGGTAGA-ACTTTGATTAAG.................................................................................................................................................................21174.0074000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000010000000000000000000000000000000001217100000000000000000000000000000000000000000000000000000000000000000100000000000100000000000100010000402062400000000011101210100200000000000000000001000
....................................................GTGGGTAGA-ACTTTGATTAATAAAA.............................................................................................................................................................25171.00710000000000000000000001000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000010000000000000912216411000000000000000000000000000000000000000000100010110000000002000012006000000239000000000000001001000000
...................................................................................................TT----AGTCA----------------A----------------------------------A-------GATTT-TCCCCATACC..................................................24168.00680000000000000000000000000000000000000000000000000000000000000000000000000000100000000010000000000000000000000000000000000000000000000000000000000011100010000000000000100000000000020000000101000000200000000000000000000220121200000000000000000000000100000000000010010001200020500010000010000013130000001400000000000000010010022020
....................................................GTGGGTAGA-ACTTTGATTAATG................................................................................................................................................................22142.0042000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002000000000000000000000000000000000000000000000000012000000000000210110000100010000000000000000000000000000000000001000000000000000000000000000101000000000100000000000010000000000001010000100204000000121200000010000110100013200
.....................................................TGGGTAGA-ACTTTGATTAATA................................................................................................................................................................21140.0040000000000000000000000000010000000000001000000000000000000000000000000000000000000000001100100010100000001000000000000100000000000000000000000000000000000000000207000010000001000000000000000000000000000000000000010000010020001000000000000000000000000100100000000001001030000010000000000000000010000001000000000000000000200010110
...................................................................................................TT----AGTCA----------------A----------------------------------A-------GATTT-TCCCCATC....................................................22139.0039000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000200000002050000000000000000010000001100000000000010000000000010000000001000000000000000000000100000000000000000011000000003000000000020000000000000000000111010000000001000000100000000100000000000000000000009000
..................................................................................................ATT----AGTCA----------------A----------------------------------A-------GATTT-TCCCCA......................................................21139.0039000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000010020000000000000000000000000000000000005000000010604000001110000000000200000000001100000000000100000009020
.........................................................................................................AGTCA----------------A----------------------------------A-------GATTT-TCCCCATAG...................................................21136.0036000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000100000000200000000000000000000000000000000000000000000000000000000000000000000000011001020000000000000000000000000000000000000011022011000000000000000000000000000000000001002000160501010000000000000000001000000100000000000000000000000000
....................................................GTGGGTAGA-ACTTTGATA....................................................................................................................................................................18134.0034000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000040000000001400000001001100000000000000000000000000000000000000000000000010000100000000000002000000000000000000000030220010100000010000000000000000000500000001000
...................................................................................................TT----AGTCA----------------A----------------------------------A-------GATTT-TCCCCAC.....................................................21133.003300000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000170001000000000000000000000000000000000000020000000100000000000000000000000000000000000000000000000000000012000
....................................................GTGGGTAGA-ACTTTGATTAATAC...............................................................................................................................................................23133.00330000000000000000000000000000000000000000001000000000000000000000000000000000000100000000000000000000000000000000000000000001000000000000000000000000000000000000000000001000000001000000000000000001000000000000000000000010220000000102000000000000000000000000000000000000020002010000000000000000002000000000100000000000000000011000
...................................................................................................TT----AGTCA----------------A----------------------------------A-------GATTT-TCCCCATAATC.................................................25132.003200000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000002012000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..................................................................................................ATT----AGTCA----------------A----------------------------------A-------GATTT-TCCCC.......................................................20132.0032000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000210000001000102000000000000000000000000000000000000010011001000000000000000000000000000000000002002000000005000000000012000000100000000000000000000000001110004000
droEug1
GGGAGCAGCATTTGTCTGTATAGTCCCAAT--GCTACTAACTCTACAGAACGGTGGGTAAA-CTTTTGACTTATATTGTT------AA-------AATATT----AGTCA----------------A----------------------------------A-------CTTTT-TCCCCCTAGATTTATCAATTTTGGAAATGTACAATCTCAGCCGGTGGTGGAGAACGGACASizeHit CountTotal NormTotal
No Reads
droBia1
GGCAGCAGCATTTGTCTGTATAATCCCAAG--GCGAGCAGCCCAAAGGAACGGTGGGTATT-CATTTAACTAGTATAAATCG---AGT-------TATATT----AGTCA----------------A----------------------------------A-----T--GGAT-T-CCCATAGATTCATCAACTTCGGCAATGTGCAATCGCGCCCAGTGGTGGAGAGGGGGCASizeHit CountTotal NormTotal
No Reads
droTak1
GGCAGCAGCATTTGTCTGTTTAATCCCAAG--GCCACCAACTCAAAAGAACGGTGGGTACTTACTTTGATTAATACTACTTG---CAA-------AATATT----AGTCA----------------A----------------------------------A-----TGG--AT-T-CCCACAGATTTGTGAGCTTTGGCAATGTGCAATCGCGACCAGTGGTGGAGAACGGGCASizeHit CountTotal NormTotal
No Reads
droEle1
GGTAGTAGCGTGTGTCTATTCAGTCCCAAA--GCCACGAACTTAAAAGAGCGGTGGGTAAA-CA-TTGATTAATACTTTATG----TG-------GATGTT----AGTCA----------------A----------------------------------T------GGA-TTTCCTACTCAGATTTATAAATTTTGGCAACGTCCAGTCGCGTCCGGTGGTGGAGAACGGGCASizeHit CountTotal NormTotal
No Reads
droRho1
GGTAGCAGCGTGTGTTTGTTTAATCCCAAA--GCCACAAATTTAAAAGAACGGTGGGTAAA-CA-TTGATTAATATTTTATG----CG-------GATATT----AGTCA----------------A----------------------------------T------GG-TTTTTCCCATCAGATTTATCAATCTTGGCAATGTCCAGTCGCGTCCGGTGGTGGAAAATGGGCTSizeHit CountTotal NormTotal
No Reads
droFic1
GGCAGCAGCGTGTGTTTATTTAACCCAAAG--GAAACAAATTCAAAGAAACGGTGGGTGAG-CA-TTGGTTAATACAGT-GG----TG-------CATATT----AGTCA----------------A----------------------------------T------GA-TATTCCCCACTAGATTTATCAATTTGGGAAATGTGCAATCGCGTCCATTGGTGGAGAACGGGCASizeHit CountTotal NormTotal
No Reads
droKik1
GGCAGCAGCGTGTGTCTGTTCAATCCCAAA--GCCACGGATATGAAGCAGCGGTGAGTTTT-AATTGGTTGTATATTG-AAA----TT-------GCTGAT----TATAA----------------A----------------------------------G------GGT-TTCTCTTTATAGTTTCATCAATTTCGGAAATGTACAGTCGCGTCCGGTGGTCGAAAACGGGCASizeHit CountTotal NormTotal
No Reads
droAna3
GGAAGTAGCATTTGTCTTTATGATCCAAAA--GAAAGCGATATAAAAAAGCGGTAGGTTTC-AAC-----CAAATTTCCTTT----GA-------GAGTTC----AGTTA----------------ACTTT------------------------------A-------TATAT-TCTTTTTAGCTTCACTAACTTCGGCAATAGTCAGTCACGACCGGTGGTTGAGAATGGACASizeHit CountTotal NormTotalM044

Female-body		M058

Embryo		V039

Embryo		V055

Head		V105

Male-body		V106

Head
..................................................................................................................................................................................................................CACGACCGGTGGTTGAGAAT.....2012.002100010
................................................................................................................................................................................................................GTCACGACCGGTGGTTGAGA.......2011.001000010
...............................................................................................................................................................................................................AGTCACGACCGGTGGTTGA.........1911.001100000
...................................................................................................................................................................................................................ACGACCGGTGGTTGAGAATGGA..2211.001100000
droBip1
GGAAGTAGCATCTGCCTATTTGATCCAAAA--GAAACTGACTTTAAAAAACGGTAGGCATT-ATTTAAATTACTATGGGCTA----CT-------ACTATT----AGCTT----------------ACTCC------------------------------A-------TACTT-TCATTTCAGCTTCACCAACCTGGGTAACAGTCAGTCGCGACCGGTGGTTGAGAATGGACASizeHit CountTotal NormTotal
No Reads
dp5
GGCAGCAGCATATGCCTCTACTCTCCCAAG--GCCACAAATAATTCAGAGCGGTGGGTAGT-CTCTCATATATAGTTATAAA----AGAACGAACACCAGT----GGTTA----------------A-GCA------------------------------A-----T--GCAT-TTCTTGTAGATTCATCAATTTCGGAACTGTGCAGTCGCATCCCGTGGTGGAGAACGGACASizeHit CountTotal NormTotalM022

Male-body		M040

Female-body		M059

Embryo		M062

Head		V043

Embryo		V051

Head		V112

Male-body		SRR902010

Ovary		SRR902011

Testis		SRR902012

CNS imaginal disc
.............................................................................................................................................................................................................GCAGTCGCATCCCGTGGTGGA.........2111.0010100000000
...........ATGCCTCTACTCTCCCAAG--GC.........................................................................................................................................................................................................2111.0010100000000
.........................................................................................................................................................................................................CTGTGCAGTCGCATCCCGTG..............2011.0010100000000
........................................................................................................................................................................................................ACTGTGCAGTCGCATCCCGTGGTGGA.........2611.0010000100000
.............GCCTCTACTCTCCCAAG--GCCACAA....................................................................................................................................................................................................2411.0010100000000
..............................................................................................................................................................................................................CAGTCGCATCCCGTGGTGGAGA.......2211.0010100000000
...........................................................................................................................................................................................CATCAATTTCGGAACTGTGCA...........................2111.0010100000000
.........................................................................................................................................................................................................CTGTGCAGTCGCATCCCGTGGTGGA.........2511.0010100000000
droPer2
GGCAGCAGCATATGCCTCTACTCTCCCAAG--GCCACAAATAATTCAGAGCGGTGGGTAGT-CTCTCATATATAGTTATAAA----AGAACGAACACCAGT----GGTAA----------------A-GCA------------------------------A-----T--GCAT-TTCTTGTAGATTCATCAATTTCGGAACTGTGCAGTCGCATCCCGTGGTGGAGAACGGACASizeHit CountTotal NormTotalM021

Embryo		M042

Female-body		V042

Embryo		V050

Head		V057

Head		V111

Male-body
...............................................................................................................................................................................................................AGTCGCATCCCGTGGTGG..........1812.002020000
.........................................................................................................................................................................................................CTGTGCAGTCGCATCCCGTGGTGG..........2411.001010000
...........................................................................................................................................................................................................GTGCAGTCGCATCCCGTGGTGGAGA.......2511.001010000
.............GCCTCTACTCTCCCAAG--GC.........................................................................................................................................................................................................1911.001010000
.............................................................................................................................................................................................................GCAGTCGCATCCCGTGGTGGA.........2111.001010000
droWil2
GGAAGCAGCATATGTCTATATTCCCCAAAG--GCCACCAATTTGTCAGAACGGTATGGT---------------AGTGCAAG---AAA-------GCCGAA----ATTCAAAAACACCCTAATTGTA----------------------------------------------ACAATTTGCAGATTTGTCAACTTTGGCACGGTCCAATCGAAGCCCGTTGTGGAAAACGGTCGSizeHit CountTotal NormTotalM020

Head		M045

Female-body		V117

Male-body		V118

Embryo		V119

Head
............TGTCTATATTCCCCAAAG--GCCACCA....................................................................................................................................................................................................2511.00101000
..........................................................................................................................................................................................................GGTCCAATCGAAGCCCGTT..............1911.00100100
...........................................................................................................................................................................................................GTCCAATCGAAGCCCGTTGTGGAAAAC.....2711.00100100
......................................................................................................................................................................................................GCACGGTCCAATCGAAGCC..................1911.00110000
........................................................................................................................................................................................ATTTGTCAACTTTGGCACGGTCCA...........................2411.00101000
..........................................................................................................................................................................................................GGTCCAATCGAAGCCCGTTGTGGA.........2411.00100100
droVir3
GGCAGCAGCATTTGCTTGTATTCGCCCAAG--GTCAGCGATCTAAAGAAACGGTACGGATT-GT--TTATTTAAATGCTT------TA-------TATATTTATCTATAA----------------G--CT------------------------------A-----T-CT-TTTTGTTTGCAGTTTCATTAACTTTGGTAATGTACAGTCGAAGCCCGTCATTAAAGACGGCCASizeHit CountTotal NormTotalM027

Male-body		M028

Head		M047

Female-body		M061

Embryo		SRR060654

Ovary		SRR060655

Testis		SRR060656

Ovary		SRR060657

Testis		SRR060658

Ovary		SRR060659

Testis		SRR060660

Ovary		SRR060661

Embryo		SRR060662

Embryo		SRR060663

Embryo		SRR060664

Male-body		SRR060665

Female-body		SRR060666

Male-body		SRR060667

Female-body		SRR060668

Male-body		SRR060669

Female-body		SRR060670

Testis		SRR060671

Male-body		SRR060672

Female-body		SRR060673

Ovary		SRR060674

Ovary		SRR060675

Ovary		SRR060676

Ovary		SRR060677

Ovary		SRR060678

Testis		SRR060679

Testis		SRR060680

Testis		SRR060681

Testis		SRR060682

Embryo		SRR060683

Testis		SRR060684

Embryo		SRR060685

Embryo		SRR060686

Embryo		SRR060687

Embryo		SRR060688

Ovary		SRR060689

Testis		SRR1106712

embryo_0-2h		SRR1106713

embryo_0-2h		SRR1106714

embryo_2-4h		SRR1106715

embryo_4-6h		SRR1106716

embryo_4-6h		SRR1106717

embryo_6-8h		SRR1106718

embryo_6-8h		SRR1106719

embryo_8-10h		SRR1106720

embryo_8-10h		SRR1106721

embryo_10-12h		SRR1106722

embryo_10-12h		SRR1106723

embryo_12-14h		SRR1106724

embryo_12-14h		SRR1106725

embryo_14-16h		SRR1106726

embryo_14-16h		SRR1106727

larvae		SRR1106728

larvae		SRR1106729

mixed whole adult body		SRR1106730

embryo_16-30h		V047

Embryo		V053

Head		V116

Male-body		GSM1528803

follicle cells		SRR2096013

Ovary_Strain_9_oxidized		SRR2096014

Ovary_Strain_160_oxidized		SRR2096026

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096038

embryo_0-2h from 14 day old Strain 9 mothers		SRR2096050

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096055

Ovary_Min_43		SRR2096056

Ovary_Min_46		SRR2096057

Ovary_Min_50		SRR2096058

Ovary_Min_98		SRR2096059

Ovary_Min_164		SRR2096060

Ovary_Min_193		SRR2096061

embryo_0-2h from 14 day old Strain 160 mothers		SRR2096072

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096079

embryo_0-2h from 15to16 day old dysgenic mothers		SRR2096080

embryo_0-2h from 15to16 day old nondysgenic mothers		SRR2096081

embryo_0-2h from 15to16 day old nondysgenic mothers
..................................CAGCGATCTAAAGAAACG.......................................................................................................................................................................................1818.0087000000000000000000000000001000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................................GAAGCCCGTCATTAAAGAC.....1914.0040010000000000000000000000000000000000000000000000000000000000000000000300000000
................................GTCAGCGATCTAAAGAAACG.......................................................................................................................................................................................2014.0044000000000000000000000000000000000000000000000000000000000000000000000000000000
.................................TCAGCGATCTAAAGAAACG.......................................................................................................................................................................................1913.0033000000000000000000000000000000000000000000000000000000000000000000000000000000
...................................................................................................................................................................................................TTGGTAATGTACAGTCGAAGCC..................2212.0020000000000000000000000000000000000000000000000000000000000000000000000020000000
............TGCTTGTATTCGCCCAAG--GTCAGC.....................................................................................................................................................................................................2411.0010000000000000010000000000000000000000000000000000000000000000000000000000000000
...........TTGCTTGTATTCGCCCAAG--GTCAGC.....................................................................................................................................................................................................2511.0010000000000000000000000000000000000001000000000000000000000000000000000000000000
..................................................................................................................................................................................................TTTGGTAATGTACAGTCGAAGCC..................2311.0010000000000000000000000000000000000000100000000000000000000000000000000000000000
.................................TCAGCGATCTAAAGAAAC........................................................................................................................................................................................1811.0011000000000000000000000000000000000000000000000000000000000000000000000000000000
...............................................................................................................................................................................................................AGTCGAAGCCCGTCATTAAA........2011.0010000000000000001000000000000000000000000000000000000000000000000000000000000000
..............CTTGTATTCGCCCAAG--GTCAGCGAT..................................................................................................................................................................................................2511.0010000000000000000010000000000000000000000000000000000000000000000000000000000000
................TGTATTCGCCCAAG--GTCAGCGATCTA...............................................................................................................................................................................................2611.0010000000000000000000000000000000010000000000000000000000000000000000000000000000
................................................................................................................................................................................................................GTCGAAGCCCGTCATTAAAGACGGCC.2611.0011000000000000000000000000000000000000000000000000000000000000000000000000000000
.............GCTTGTATTCGCCCAAG--GTCAGCGATC.................................................................................................................................................................................................2711.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................................................................................ATGTACAGTCGAAGCCCG................1811.0010000000000000000000000000000000000000000000000000000000000000000000000010000000
....................TTCGCCCAAG--GTCAGCGAT..................................................................................................................................................................................................1911.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
......................CGCCCAAG--GTCAGCGATCTAAAG............................................................................................................................................................................................2311.0010000000000000000000000000000010000000000000000000000000000000000000000000000000
................................GTCAGCGATCTAAAGAAAC........................................................................................................................................................................................1911.0011000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................................................................................................................................................................................TTAACTTTGGTAATGTACAGT.........................2111.0010010000000000000000000000000000000000000000000000000000000000000000000000000000
..........................................................................................................................................................................................................TGTACAGTCGAAGCCCGT...............1811.0010000000000000000000000000000000000000000000000000000000000010000000000000000000
..................................................................................................................................................................................................................CGAAGCCCGTCATTAAAGAC.....2011.0010000000000000000000000000000000000000000000000000000000000000000000001000000000
...................................................................................................................................................................................................TTGGTAATGTACAGTCGAAGCCCGTCA.............2711.0010000000000000000000000001000000000000000000000000000000000000000000000000000000
...........................................................................................................................................................................................................GTACAGTCGAAGCCCGTCATTAAAG.......2511.0010000000000000000000000000000000000000000000000000000000000000000000001000000000
droMoj3
GGGAGCAGCATTTGTCTTTTTTCCCCTAAA--GAGACCGATTTAAAAAAACGGTGTGTAAA-TA-TGGATTATTATTT---ATAAATTATCGAAAACTTAA----CTTCTAA-----------TGT-------------------------TTTTATATTTATATTTT-CA-ACATACTCTCAGTTTCATCAACTTCGGCAATGTACAGACGCAACCCGTATATAAAAACGAGCASizeHit CountTotal NormTotalM046

Female-body		V041

Embryo		V049

Head		V056

Head		M060

Embryo		V110

Male-body
................TTTTTTCCCCTAAA--GAGACCGAT..................................................................................................................................................................................................2311.001100000
.........................CTAAA--GAGACCGATTTAAAA............................................................................................................................................................................................2011.001100000
................................GAGACCGATTTAAAAAAAC........................................................................................................................................................................................1911.001100000
...............CTTTTTTCCCCTAAA--GAGACC.....................................................................................................................................................................................................2111.001100000
.........................................................................................................................................................................................TTCATCAACTTCGGCAATGTACA...........................2311.001100000
.......................................................................................................................................................................................GTTTCATCAACTTCGGCAATGT..............................2211.001100000
droGri2
GGCAGCAGTATTTGTTTGTTG--TCGCCAGGCCAGATTGATATCAAGAAGCGGTACGTTCTACATTTGGTTGA-ACTATTCT----TG-------AACTTG----AGCCGAAAAAACTTTAGCTGTATTTTAAACATTCTTTTTCAATCTCTTTTGTGTGTG-----T-GT-TTTTATTTGCAGTTTCATTAACTTTGGCAATGTACAAGCGCAGCCGGAAATCAAGGATGGCAASizeHit CountTotal NormTotalM041

Female-body		V109

Male-body
No Reads

Generated: 10/20/2015 at 11:02 PM