ID:

der_306

 Coordinate:

scaffold_4512:590502-590652 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

-6.5 -6.2 -6.2

Flybase annnotation

CDS [Dere\GG16439-cds]; exon [dere_GLEANR_16545:5]; intron [Dere\GG16439-in]

No Repeatable elements found

mature
  1. scaffold_3758:700-720 +
  2. scaffold_4512:312290-312310 +
  3. scaffold_4643:9773-9793 +
  4. scaffold_4710:64301-64321 +
  5. scaffold_4756:6598-6618 +
  6. scaffold_4784:19589855-19589875 +
  7. scaffold_4784:23179795-23179815 +
  8. scaffold_4795:119707-119727 +
  9. scaffold_4845:198865-198885 +
  10. scaffold_4845:211787-211807 +
  11. scaffold_4845:1818643-1818663 +
  12. scaffold_4902:600-620 +
  13. scaffold_4929:14561075-14561095 +
  14. scaffold_4929:17346859-17346879 +
  15. scaffold_4929:21230317-21230337 +
  16. scaffold_4929:22770055-22770075 +
  17. scaffold_4929:23245795-23245815 +
  18. scaffold_4929:25035258-25035278 +
  19. scaffold_4929:25173853-25173873 +
  20. scaffold_4929:26234273-26234293 +
  21. scaffold_376:1288-1308 +
  22. scaffold_3000:2464-2484 +
  23. scaffold_4759:46987-47007 +
  24. scaffold_4784:24474478-24474498 +
  25. scaffold_4784:24865067-24865087 +
  26. scaffold_4929:23323151-23323171 +
  27. scaffold_4929:23384631-23384651 +
  28. scaffold_2862:1949-1969 -
  29. scaffold_4211:142-162 -
  30. scaffold_4684:28107-28127 -
  31. scaffold_4783:1070-1090 -
  32. scaffold_4784:22985651-22985671 -
  33. scaffold_4784:24455687-24455707 -
  34. scaffold_4784:24947350-24947370 -
  35. scaffold_4784:24961695-24961715 -
  36. scaffold_4784:25247521-25247541 -
  37. scaffold_4788:85358-85378 -
  38. scaffold_4795:7747-7767 -
  39. scaffold_4820:9439208-9439228 -
  40. scaffold_4826:48508-48528 -
  41. scaffold_4834:40897-40917 -
  42. scaffold_4845:1850252-1850272 -
  43. scaffold_4845:12485102-12485122 -
  44. scaffold_4929:21716945-21716965 -
  45. scaffold_4929:23015408-23015428 -
  46. scaffold_4929:24360720-24360740 -
  47. scaffold_4929:24981633-24981653 -
  48. scaffold_2343:1512-1532 +
  49. scaffold_2487:1950-1970 +
  50. scaffold_4449:6174-6194 +
  51. scaffold_4504:2715-2735 +
  52. der_306  scaffold_4512:590625-590645 +
  53. scaffold_4626:832-852 +
  54. scaffold_4685:33876-33896 +
  55. scaffold_4732:49173-49193 +
  56. scaffold_4770:1919983-1920003 +
  57. scaffold_4784:23880979-23880999 +
  58. scaffold_4784:25219961-25219981 +
  59. scaffold_4784:25301681-25301701 +
  60. scaffold_4800:63462-63482 +
  61. scaffold_4845:1597849-1597869 +
  62. scaffold_4845:18585291-18585311 +
  63. scaffold_4910:3914-3934 +
  64. scaffold_4929:24265896-24265916 +
  65. scaffold_4929:25179698-25179718 +
  66. scaffold_4929:25867914-25867934 +
  67. scaffold_4929:26375078-26375098 +
  68. scaffold_278:256-276 -
  69. scaffold_723:129-149 -
  70. scaffold_1356:5156-5176 -
  71. scaffold_3077:3342-3362 -
  72. scaffold_3120:2474-2494 -
  73. scaffold_3201:4787-4807 -
  74. scaffold_3444:8856-8876 -
  75. scaffold_3556:1071-1091 -
  76. der_1469  scaffold_4784:22660847-22660867 -
  77. scaffold_4784:23137674-23137694 -
  78. scaffold_4784:23874365-23874385 -
  79. scaffold_4784:23948642-23948662 -
  80. scaffold_4784:24883000-24883020 -
  81. scaffold_4845:1086075-1086095 -
  82. scaffold_4845:1540168-1540188 -
  83. scaffold_4845:2917127-2917147 -
  84. scaffold_4929:22691901-22691921 -
  85. scaffold_4929:23042620-23042640 -
  86. scaffold_4929:25422231-25422251 -
  87. scaffold_4929:25882623-25882643 -
star
  1. scaffold_2343:1473-1493 +
  2. scaffold_2487:1911-1931 +
  3. scaffold_3240:1297-1317 +
  4. scaffold_4449:6135-6155 +
  5. der_306  scaffold_4512:590586-590606 +
  6. scaffold_4626:793-813 +
  7. scaffold_4685:7754-7774 +
  8. scaffold_4685:33837-33857 +
  9. scaffold_4770:1919944-1919964 +
  10. scaffold_4784:23876586-23876606 +
  11. scaffold_4784:24559415-24559435 +
  12. scaffold_4784:25301642-25301662 +
  13. scaffold_4784:25412964-25412984 +
  14. scaffold_4800:63423-63443 +
  15. scaffold_4828:44525-44545 +
  16. scaffold_4910:3875-3895 +
  17. scaffold_4929:24085654-24085674 +
  18. scaffold_4929:24265857-24265877 +
  19. scaffold_4929:25179659-25179679 +
  20. scaffold_4929:26375039-26375059 +

Sense Strand Reads

##################################################---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------
TTGACCGGAAACTCAAGCAACATAAGCTCTTTGGGTCTTCAAAACGATAGGTAAGTTATTTAGTTCATTATTTAGTTTACTCTTAGTTAATACATATAAATATAAAAATATCATATAATAGGTTGGAAAATATCTCCCTTCCGCTTTTTTGCTCTTTATTCAATGCCTTATAAAAAGTGTTACAGTGATCGGATTTAGTTCAAATATGCGCCGTTTTGTTCGATAATCTGTTTCCATCTAGATGGCAACTT
**************************************************************************************************************************************(((..((.(((....((((.(((((..........))))).))))....)))))..))).********************************************************* 		Read size # Mismatch Hit Count Total Norm Total V107
male body		 V108
head
 M055
female body
 M057
embryo
 GSM1528801
follicle cells		 V060
head
 V040
embryo
.............................................................................................................................................................................AAAGTGTTACAGTGATCGGAT......................................................... 21 0 20 30.25 605 605 0 0 0 0 0 0
..............................................................................................................................................................................AAGTGTTACAGTGATCGGAT......................................................... 20 0 20 2.80 56 0 56 0 0 0 0 0
.............................................................................................................................................................................AAAGTGTTACAGTGATCGG........................................................... 19 0 20 2.45 49 23 0 26 0 0 0 0
................GCAACATAAGCTCTTTGGGT....................................................................................................................................................................................................................... 20 0 1 2.00 2 1 0 1 0 0 0 0
........................................................................................................................................................................................................CAAATATGCGCCGTTTTGTT............................... 20 0 20 1.70 34 0 0 34 0 0 0 0
..............................................................................................................................................................................AAGTGTTACAGTGATCGGA.......................................................... 19 0 20 1.50 30 0 30 0 0 0 0 0
.................................................................................................................................................................................................TTTAGTTCAAATATGCGCCGT..................................... 21 0 20 1.50 30 0 30 0 0 0 0 0
....................................................................................................................................................................................TACAGTGATCGGATTTAGTT................................................... 20 0 20 1.45 29 0 29 0 0 0 0 0
.......................................................................................................................................................................................................TCAAATATGCGCCGTTTTG................................. 19 0 20 1.15 23 23 0 0 0 0 0 0
.................................................................................................................................................................................................TTTAGTTCAAATATGCGCCG...................................... 20 0 20 1.10 22 22 0 0 0 0 0 0
.............CAAGCAACATAAGCTCTTTGGGTCT..................................................................................................................................................................................................................... 25 0 1 1.00 1 0 0 0 0 1 0 0
...................ACATAAGCTCTTTGGGTCT..................................................................................................................................................................................................................... 19 0 1 1.00 1 0 1 0 0 0 0 0
.....................................TTCTAAACGATAGGTAAGT................................................................................................................................................................................................... 19 1 1 1.00 1 0 0 0 1 0 0 0
........................................................................................................................................................................................................CAAATATGCGCCGTTTTGTTC.............................. 21 0 20 0.85 17 17 0 0 0 0 0 0
..................................................................................................................................................................................................................CCGTTTTGTTCGATAATCTG..................... 20 0 20 0.80 16 0 0 16 0 0 0 0
....................................................................................................................................................................................................AGTTCAAATATGCGCCGTTTT.................................. 21 0 20 0.70 14 0 0 14 0 0 0 0
................................................................................................................................................................................................ATTTAGTTCAAATATGCGCCGTT.................................... 23 0 20 0.70 14 6 0 8 0 0 0 0
................................................................................................................................................................................GTGTTACAGTGATCGGATTTA...................................................... 21 0 20 0.55 11 11 0 0 0 0 0 0
.................................................................................................................................................................................................TTTAGTTCAAATATGCGCCGTTT................................... 23 0 20 0.55 11 0 0 11 0 0 0 0
.................................................................................................................................................................................................TTTGGTTCAAATATGCGCCGTT.................................... 22 1 20 0.50 10 0 0 10 0 0 0 0
.............................................................................................................................................................................AAAGTGTTACAGTGATCGGATTT....................................................... 23 0 20 0.45 9 0 9 0 0 0 0 0
...................................................................................................................................................................................................................CGTTTTGTTCGATAATCTGTT................... 21 0 20 0.45 9 0 9 0 0 0 0 0
...................................................................................................................................................................................TTACAGTGATCGGATTTAGTTC.................................................. 22 0 20 0.40 8 0 0 8 0 0 0 0
.............................................................................................................................................................................................CGGATTTAGTTCAAATATGCG......................................... 21 0 20 0.35 7 7 0 0 0 0 0 0
.........................................................................................................................................................................................TGATCGGATTTAGTTCAAAT.............................................. 20 0 20 0.30 6 0 0 6 0 0 0 0
....................................................................................................................................................................................TACAGTGATCGGATTTAGT.................................................... 19 0 20 0.30 6 6 0 0 0 0 0 0
...............................................................................................................................................................................................GATTTAGTTCAAATATGCGC........................................ 20 0 20 0.25 5 0 0 5 0 0 0 0
....................................................................................................................................................................................TACAGTGATCGGATTTAGTTCAAA............................................... 24 0 20 0.20 4 0 0 4 0 0 0 0
.......................................................................................................................................................................................AGTGATCGGATTTGGTTCA................................................. 19 1 20 0.20 4 4 0 0 0 0 0 0
...............................................................................................................................................................................AGTGTTACAGTGATCGGATTTA...................................................... 22 0 20 0.20 4 4 0 0 0 0 0 0
..............................................................................................................................................................................................GGATTTAGTTCAAATATGCGC........................................ 21 0 20 0.15 3 0 0 0 3 0 0 0
................................................................................................................................................................................................ATTTAGTTCAAATATGCGCCGT..................................... 22 0 20 0.15 3 3 0 0 0 0 0 0
......................................................................................................................................TCCCTTCCGCTTTTTTGCTCT................................................................................................ 21 0 20 0.15 3 0 0 3 0 0 0 0
..........................................................................................................................................................................................................AATATGCGCAGTTTTGTTCG............................. 20 1 20 0.15 3 0 3 0 0 0 0 0
....................................................................................................................................................................................TACAGTGATCGGATTTAGTTCA................................................. 22 0 20 0.15 3 0 0 3 0 0 0 0
..........................................................................................................................................TTCCGCTTTTTTGCTCTTTATT........................................................................................... 22 0 20 0.15 3 0 0 3 0 0 0 0
.................................................................................................................................................................................TGTTACAGTGATCGGATTTAGT.................................................... 22 0 20 0.15 3 0 0 0 0 0 3 0
.......................................................................................................................................................................................................................TTGTTCGATAGTCTGTTTCC................ 20 1 20 0.15 3 0 0 3 0 0 0 0
............................................................................................................................................................................................................TATGCGCCGTTTTGTTCG............................. 18 0 20 0.10 2 0 2 0 0 0 0 0
..............................................................................................................................................................................AAGTGTTACAGTGATCGGGTT........................................................ 21 1 20 0.10 2 2 0 0 0 0 0 0
..................................................................................................................................................................................GTTACAGTGATCGGATTTAGTTC.................................................. 23 0 20 0.10 2 0 2 0 0 0 0 0
.........................................................................................................................................................................................................AAATATGCGCAGTTTTGTTCG............................. 21 1 20 0.10 2 0 2 0 0 0 0 0
.............................................................................................................................................................................AAAGTGTTACAGTGATCGT........................................................... 19 1 20 0.10 2 0 2 0 0 0 0 0
.......................................................................................................................................................................................................................TTGTTCGATAGTCTGTTTCCA............... 21 1 20 0.10 2 2 0 0 0 0 0 0
..............................................................................................................................................................................................................................ATAATCTGTTTCCATCTAG.......... 19 0 20 0.10 2 0 0 2 0 0 0 0
....................................................................................................................................................................................TACGGTGATCGGATTTAGTTC.................................................. 21 1 20 0.10 2 0 2 0 0 0 0 0
............................................................................................................TATCATCTCATCGGTTGGA............................................................................................................................ 19 3 14 0.07 1 0 0 0 1 0 0 0
.....................................................................................................................................................................................ACGGTGATCGGATTTAGTTC.................................................. 20 1 20 0.05 1 1 0 0 0 0 0 0
.....................................................................................................................................................................................ACAGTGATCTGATTTAGTTCA................................................. 21 1 20 0.05 1 1 0 0 0 0 0 0
............................................................................................................................................................................................TCGGATTTAGTTCAAATATGCGCCG...................................... 25 0 20 0.05 1 0 0 1 0 0 0 0
......................................................................................................................................................................................................................TTTGTTCGATAATCTGTTTCC................ 21 0 20 0.05 1 0 0 0 0 0 0 1
.............................................................................................................................................................................AAAGTGTTTCAGTGATCGTTTT........................................................ 22 3 20 0.05 1 1 0 0 0 0 0 0
.................................................................................................................................................................................TGTTACAGTGGTCGGATTTAG..................................................... 21 1 20 0.05 1 0 0 0 0 0 0 1
..................................................................................................................................................................................GTTACAGTGATCGGATTTGGTT................................................... 22 1 20 0.05 1 0 0 0 0 0 0 1
.............................................................................................................................................................................................................................GATAATCTGTTTCCATCT............ 18 0 20 0.05 1 0 0 1 0 0 0 0
............................................................................................................................................................................................................................CGATAATCTGTTTCCATC............. 18 0 20 0.05 1 0 0 1 0 0 0 0
........................................................................................................................................................................................................CAAATATGCGCCGTTTTGTTGG............................. 22 1 20 0.05 1 0 0 1 0 0 0 0
.................................................................................................................................................................................................TTTAGTTCAAATATGCGCCGGTT................................... 23 1 20 0.05 1 0 0 1 0 0 0 0
.....................................................................................................................................................................................ACAGTGATCGGATTTGGTTCA................................................. 21 1 20 0.05 1 0 0 0 0 0 0 1
..................................................................................................................................................................................GTTACGGTGATCGGATTTAGT.................................................... 21 1 20 0.05 1 0 1 0 0 0 0 0
.............................................................................................................................................CGCTTTTTTGCTCTTTATTCAAT....................................................................................... 23 0 20 0.05 1 0 0 1 0 0 0 0
.....................................................................................................................................................................................ACGGTGATCGGATTTGGTTCA................................................. 21 2 20 0.05 1 0 1 0 0 0 0 0
..............................................................................................................................................................................................................TGCGCCGTTTTGTTCGATAAA........................ 21 1 20 0.05 1 0 1 0 0 0 0 0
.............................................................................................................................................................................AAAGTGTTACAGTGATCGGTTTT....................................................... 23 1 20 0.05 1 0 1 0 0 0 0 0
.....................................................................................................................................................................................TCAGTGATCGGATTTAGTTC.................................................. 20 1 20 0.05 1 0 0 1 0 0 0 0
..................................................................................................................................................................................GTTACAGTGATCGGCTTTAGT.................................................... 21 1 20 0.05 1 0 0 0 0 0 1 0
......................................................................................................................................................................................................................TTTGTTCGATAATCTGTTTCCA............... 22 0 20 0.05 1 0 0 0 0 0 1 0
...............................................................................................................................................................................AGTGTTACGGTGATCGGATT........................................................ 20 1 20 0.05 1 0 1 0 0 0 0 0
..................................................................................................................................................TTTTGCTCTTTATTCAATG...................................................................................... 19 0 20 0.05 1 0 0 0 1 0 0 0
........................................................................................................................................................................................GTGATCGGATTTAGTTCAAAT.............................................. 21 0 20 0.05 1 0 1 0 0 0 0 0
................................................................................................................................................................................................ATTTAGTTCAAGTATGCGCCG...................................... 21 1 20 0.05 1 0 1 0 0 0 0 0
...................................................................................................................................................................................................GAGTTCAAATATGCGCCGTTT................................... 21 1 20 0.05 1 0 0 1 0 0 0 0
..................................................................................................................................................TTTTGCTCTTTATTCAATGCC.................................................................................... 21 0 20 0.05 1 0 0 0 1 0 0 0
...................................................................................................................................................................TGCCTTATAAAAAGTGTTACAGTGA............................................................... 25 0 20 0.05 1 0 0 1 0 0 0 0
..............................................................................................................................................GCTTTTTTGCTCTTTATTCAAT....................................................................................... 22 0 20 0.05 1 0 1 0 0 0 0 0
...................................................................................................................................................................................TTCCAGTGATCGGATTTGGTT................................................... 21 2 20 0.05 1 1 0 0 0 0 0 0
...................................................................................................................................................................TGCCTTATAAAAAGTGTTACAGTGAT.............................................................. 26 0 20 0.05 1 0 0 1 0 0 0 0
.............................................................................................................................................................................AAAGTGTTACAGTGATCCGAT......................................................... 21 1 20 0.05 1 0 1 0 0 0 0 0
...................................................................................................................................................................................TTACGGTGATCGGATTTGGTT................................................... 21 2 20 0.05 1 0 0 0 0 0 1 0
..............................................................................................................................................................................AAGTGTTACAGTGATCCGATTT....................................................... 22 1 20 0.05 1 0 1 0 0 0 0 0
.............................................................................................................................................CGCTTTTTTGCTCTTTATTCAATG...................................................................................... 24 0 20 0.05 1 0 0 1 0 0 0 0
...............................................................................................................................................CTTTTTTGCTCTTTATTCAAT....................................................................................... 21 0 20 0.05 1 0 1 0 0 0 0 0
..........................................................................................................................................TTCCGCTTTTTTGCTCTTTAT............................................................................................ 21 0 20 0.05 1 0 0 1 0 0 0 0
................................................................................................................................................................................................AGTTAGTTCAAATATGCGCCG...................................... 21 1 20 0.05 1 0 0 0 1 0 0 0
.........................................................................................................................................................................ATAAAAAGTGTTACAGTGATC............................................................. 21 0 20 0.05 1 0 0 1 0 0 0 0
........................................................................................................................................................................................................................TGTTCGATAATCTGTTTC................. 18 0 20 0.05 1 0 0 1 0 0 0 0
.............................................................................................................................................................................AAAGTGTTACAGTGATCGGCT......................................................... 21 1 20 0.05 1 0 1 0 0 0 0 0
..........................................................................................................................................................................................................................TTCGATAATCTGTTTCCATCTT........... 22 1 20 0.05 1 0 0 1 0 0 0 0

Anti-sense strand reads

AACTGGCCTTTGAGTTCGTTGTATTCGAGAAACCCAGAAGTTTTGCTATCCATTCAATAAATCAAGTAATAAATCAAATGAGAATCAATTATGTATATTTATATTTTTATAGTATATTATCCAACCTTTTATAGAGGGAAGGCGAAAAAACGAGAAATAAGTTACGGAATATTTTTCACAATGTCACTAGCCTAAATCAAGTTTATACGCGGCAAAACAAGCTATTAGACAAAGGTAGATCTACCGTTGAA
*********************************************************(((..((.(((....((((.(((((..........))))).))))....)))))..))).************************************************************************************************************************************** 		Read size # Mismatch Hit Count Total Norm Total M055
female body
 V040
embryo
 V108
head
 V060
head
 M057
embryo
 V107
male body
....................................................................................................................................................................................ATGTCACTAGCCTAAATCAAG.................................................. 21 0 20 2.45 49 49 0 0 0 0 0
............................................................................................................................................................................................................................GCTATTAGACAAAGGTAGAT........... 20 0 20 1.40 28 28 0 0 0 0 0
.......................................................................................ATTATGTATATCTATTTTTTTAT............................................................................................................................................. 23 2 2 0.50 1 0 1 0 0 0 0
.................................................................................................................................................................................................................CGGCAAAACAAGCTATTAGAC..................... 21 0 20 0.35 7 7 0 0 0 0 0
............................................................................................................................................................................................................................GCTATTAGACAAAGGTAGATC.......... 21 0 20 0.15 3 0 0 0 3 0 0
..........................................................................................................................................................................................................................AAGCTATTAGACAGAGGTAGAT........... 22 1 20 0.10 2 0 0 2 0 0 0
........................................................................................................................................................................................................................ACAAGCTATTAGACAAAGGTAGAT........... 24 0 20 0.10 2 2 0 0 0 0 0
.............................................................CCAAGTTATACATCAAATGA.......................................................................................................................................................................... 20 3 12 0.08 1 0 0 0 0 1 0
.........................................................................................................................................................................TATTTTTCACAATGTCACTAGC............................................................ 22 0 20 0.05 1 1 0 0 0 0 0
..........................................................................................................................................................................................................................AAGCTATTAGACAAAGGTAG............. 20 0 20 0.05 1 0 0 1 0 0 0
............................................................................................................................................................................................................................GCTGTTAGGCAAAGGTAGAT........... 20 2 20 0.05 1 0 0 0 0 0 1
..........................................................................................................................................................................................CTGGCCTAAATCAAGTTTATA............................................ 21 1 20 0.05 1 1 0 0 0 0 0
..................................................................................................................................................................................CAATGTCACTAGCCTAAATCAA................................................... 22 0 20 0.05 1 0 0 0 0 1 0
...........................................................................................................................................................................TTTTTCACAATGTCACTAGCCTAAA....................................................... 25 0 20 0.05 1 1 0 0 0 0 0
........................................................................................................................................................................................CACTATCCTAAATCAAGTTTG.............................................. 21 2 20 0.05 1 1 0 0 0 0 0
......................................................................................................................................................................................GTCACTAGCCTTAATCAAGTT................................................ 21 1 20 0.05 1 1 0 0 0 0 0
...............................................................................................................................................GAAAAAACGAGAAATAAGTGA....................................................................................... 21 1 20 0.05 1 0 0 0 0 0 1
.......................................................................................................................................................................................................................AACAAGCTGTTAGACAGAGGT............... 21 2 20 0.05 1 0 0 1 0 0 0
.............................................................................................................................................................................................................................CTATTAGACAAAGGTAGATCTA........ 22 0 20 0.05 1 0 0 1 0 0 0
............................................................................................................................................................................TTTTCACAATGTCACTAGCCTAAATCAAG.................................................. 29 0 20 0.05 1 1 0 0 0 0 0
........................................................................................................................................................................................................................ACAAGCTATTAGACAAAGGTAGATCTA........ 27 0 20 0.05 1 1 0 0 0 0 0
...............................................................................................................................................................................TCACAATGTCACTAGCCTAAATCAAGTT................................................ 28 0 20 0.05 1 1 0 0 0 0 0
..........................................................................................................................................................................................................................AAGCTATTAGGCAAAGGTAGAT........... 22 1 20 0.05 1 0 0 1 0 0 0
...................................................................................................................................................................................................ATCAAGTTTATACGCGGC...................................... 18 0 20 0.05 1 1 0 0 0 0 0
.................................................................................................................................................................................................AAATCAAGTTTATACGCGGC...................................... 20 0 20 0.05 1 0 0 1 0 0 0
.......................................................................................ATTATGCACATTTATATT.................................................................................................................................................. 18 2 20 0.05 1 0 1 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droEre2 scaffold_4512:590452-590702 + der_306 TTGACCGGAAACTCAAGCAACATAAGCTCTTTGGGTCTTCAAAACGATAGGTAAGTTATTTAG-------T---TC-ATTATTTAGTTT----------ACT-----------------------------CTTAGTTAATACATA---------------------------------------------TAAATATAAAAA--TATCATAT---------------------------------------AATAGGTTGGAAAATATCTCCCTTCCGCTTTTTTGCTCTTTATTCAATGCCTT-ATAAAAAGTGTTACA------------GTGATCG----------------------GATTTAGTTCAAATATGCGCCGTTTTGTTCGATAATCTGTTTCCATCTAGATGGCAACTT
droYak3 v2_chrUn_2620:574-754 - ATCTAGTA------------------------------------------------------------------------------------------------------------------------------------------------TACCCTTTTACTCTACGAGTAACGG-------GTATAA----ATA--------------------------------TAAT-------------------ATAAGGTTGTCAAATATCTCCCTTCCGCTTTTTTGCTCTTTATTCAATGCTTT-ATAAAAAGTGTTACA------------GTGATCG----------------------GATTTAGTTCAAATATGCGCCGTTTTGTTCGATAATCTGTTTCCATCTAGACGGCAACTT
droSec2 scaffold_30:396218-396357 - TTGACGGCCAACACAAGCAACATAAGCTCATTGGGTCTTCAAAACGATAGGTAAG-----------------------------------------------AATAATTAGATAGCTTCACCTTTATGCTTCTTAGTTAATAC------------------------------------------------------------------------------------G----------CC-------TAC------------CA-----------------------------------AACAGATCTGAAAAGATATATTCTAACTTTGGGA-A--------------------------------------------------------------------------------------T
droSim2 4:483242-483380 - TTGACGGCCAACACAAGCAACATAAGCTCATTGGGTCTTCAAAACGATAGGTAAG-----------------------------------------------AATAATTAGATAACTTCACCTTTACTC-TCTTAGTTAATAC------------------------------------------------------------------------------------G----------CC-------TAC------------CA-----------------------------------AACAGATCTGAAAAGATATATTCTAACTTTGGGA-A--------------------------------------------------------------------------------------T
dm3 chr4:674420-674545 - TTGACGGCCAACACAAGCAACATAAACTCTTTGGGTCTTCAAAACGATAGGTAAGATA------------------------------------------------ATTAGATAACTTCACCTTTACTC-TCTTAGTTAATAC------------------------------------------------------------------------------------GTATGTATAAATC-------TAC------------CA-----------------------------------AACAGATCTAAA-------------------------------------------------------------------------------------------------------------AA
droEug1 scf7180000409538:237557-237757 - TCTTCAAA-----AATGT------------------------------TCTAAAAATATTTAAAAAGTTGTTATTA-ATATT--GATTA----------ATA-----------------------------TATTG--C---AA------------------------------------------------AAATA-AAAAA--TATTATAAAAATATTT-------------------------------TTTAGGTTGTCAAAAAAGTCT-T-------------------------GCGGT-ATAAAATTGGTTACA------------ATAATGC------------------CGATGATTCAAGTCAAATATGCGCCGTTTTGTTCGATGACGCGTTCCCAACGAGATGCCAACTT
droBia1 scf7180000301492:13827-13997 + AAATTGTTTAATTTTAGT--------------------------------------------------------------------------------------------------------------------------------------------------TTACTACTATCTT-------GTTTATCGAAACT-AAAAT--TATTTTGGCAATACTTAT-----------------CTGATTTATCGTAGTAGGTTGTCAAAAAAGTTC-TTCTGTGTTTTAATTGAATATTCAATTGTTC-ATAAAAGAGGATACA------------AAAACGC----------------------TAATCAGGTCAAATATGC------------------------------------------
droTak1 scf7180000415415:25458-25599 + TAT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTGGGTTGGCAAGAAAGTCA-TGTCGTTTTTTTTTTTTT-----------------AATATTTTCAAA------------GTTGATTTATTTATATCAGGACTTATAATTAA-TCAATTATGTATTGGCCGTTTTGTTCGACCACTAATGACCATCTCTCGGGCAACTG
droEle1 scf7180000491267:60260-60406 - AAATAGTA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAT-------------------ATAAGGTTATCAAATATCTCTCTTCCGCAATTTTGCTCTTTATTCAGTGCTTT-ATGAAAAGTGTTACA------------GTGATCG----------------------GATTTACATCAAATATGCTCCGTTTTGTTTGATAACCTGTTTCCATGTAGACAGCAACTT
droRho1 scf7180000777736:54887-55133 - GTTTTTAAGCAAATAGGCATTATAATCAAATATTTAATTAATTATGATAATTAAT-----------------------------------------------CATAATTAAATCAAATA-------------------------TT-----TTAAGCTTTTTGTCTAC-------ACAGAAATTGTTTCT-------------------------------------TTATAT-------------------ATTAGGTTGTCAAATAACTCCCTTTCGCTTTTTTGCTCTTTATTCAATGCTTT-ATAAAAATTGATACA------------GTGAACG----------------------GATTTAGCTAAAATATGCGCCGTTTCGTTCGATAATGTGTTCCCATTTAGACTGCAACTT
droFic1 scf7180000452651:53723-53928 - TTGGACAGTCAGAACTGCAGGG------------------------------------------------TCAACG-TTAC------TTGAATCTGTGT---------------------------------------TCAACTTACTAGAAGAACCTTAT------------------------------------------------------------------AATTAT-------------------ATAAGGTTGTCAAAAAAGTCT-TGCGGTATTTTTATTGAATTTTCAATTGTTC-ATAAA-ATAGTTATA------------ATAATGC----------------------GATTTAAGTCAAATATGCGCCGTTATGTTCGATGATGAGTTTCCAACGAGATGCCAACTT
droKik1 scf7180000299898:2066-2265 + TAGGTATAATATTTACATAATT----------------------------------------------------AG-TTTTA--AGCTT----------AAT-----------------------------TTTAG---------------------------GGTATTATTTACAG----------------------------------------------AGAGATATAT-------------------ATAAGGTTGTCAAAAAAGTCT-TGCGGTATTTTTATTGAATTTTCAATTGTTC-ATAAAATTGGTTATA------------ATAATGT----------------------GATTTAAGTCAAATATGCGCCGTTTTGTTCGATAACGAATTCCTAACGAGATGCCATCTT
droAna3 scaffold_13099:747833-748030 - GGGAAGTTGTGCA--------A------------------------------------------------TTTTCC-TTATT--GGCTT----------ATT-----------------------------TGTGG--G---CATA---------------------------------------------TTAA----AAAAAA------------------ATATGTATAT-------------------ATAAGGTTGTCAAATATCTCCCTTCCGCTTTTTTGCTCTTTATTCAATGCTTT-ATAAAAAGTGTTACA------------GTGATCG----------------------GATTTAGTTAAAATATGCGCCGTTTTGTTCGATAATCTGTTTCCATCTAGACGGCAACTT
droBip1 scf7180000395125:662-854 - GGTAAGGT-ATTACAATTTT---------TTTTTTAA---------------------------------TTTTTT-TTATT--TTTTA----------AAT-----------------------------TGAAT--G---CA-------------------------------------------------------------------------------------TAAT-------------------ATAAGGTTGTCAAATATCTCCCTTCCGCTTTTTTGCTCTTTATTCAATGCTTT-ATAAAAAGTGTTACA------------GTGATCC----------------------GATTTAGTTGAAATATGCGCCGTTTTGTTCGATAATCCGTTTCCATCTAGACGGCAACTT
dp5 Unknown_group_233:14451-14506 - TTATCGAGCAATTCAAACAATATGGGCTCTTTGGGCCTGCAAAATGATGGGTAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GT
droPer2 scaffold_42:457560-457615 + TTATCGAGCAATTCAAACAATATGGGCTCTTTGGGCCTGCAAAATGATGGGTAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GT
droWil2 scf2_1100000004585:4279580-4279787 + ATAAATAAGTATATATATGTAG------------------------------------------------ATATTT-ATAT------CTAATTATAAAG---------------------------------------TATACATA---------------------------------------------TAAGTATAA-----------------------ATATGTATAT-------ATAAGTTTTTATATTGGTTCGTTTAATAAGTAA-TATCGTTTTTTTAGTGCAATTCAAATGGG-ATTTTTT----------TTTATTTTATA-AAACGTT----------------------TTATGAAATTATGTATTCTCCATTTCGCTCTGTA-CCTTTT---------GCTATAATTT
droVir3 scaffold_13052:1266278-1266352 + TTAACTAGCAACTCAAGCAACATGGGCCCGCTCGGCCTACAAAACGATGGGTCAGTAAACAAA-------T---GCTATTATT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TA
droMoj3 scaffold_6473:9599038-9599200 - GTAAATACAA-CAAATGAAAATA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAAAT-------------------ATTGGGTAGTCTAAAAAGTCT-TTTCGTATTTGTAATGAAACTTCAAATCATATTTTTAAATATTTATA------------ATAAACT----------------------TTATTAAATCAAATATGCACCATTTTGGTCGACCACCTTTTGCCATTTTTCCACTAGAGA
droGri2 scaffold_14822:794402-794460 - TTAGCAAGCAACTCAAACAACATGGGCCCGCTGGGCTTGCAAAATGATGGGTCAGTTG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------T

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droEre2
TTGACCGGAAACTCAAGCAACATAAGCTCTTTGGGTCTTCAAAACGATAGGTAAGTTATTTAG-------T---TC-ATTATTTAGTTT----------ACT-----------------------------CTTAGTTAATACATA---------------------------------------------TAAATATAAAAA--TATCATAT---------------------------------------AATAGGTTGGAAAATATCTCCCTTCCGCTTTTTTGCTCTTTATTCAATGCCTT-ATAAAAAGTGTTACA------------GTGATCG----------------------GATTTAGTTCAAATATGCGCCGTTTTGTTCGATAATCTGTTTCCATCTAGATGGCAACTTSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
......................................................................................................................................................................................................................................................................................................................AAAGTGTTACA------------GTGATCG----------------------GAT.........................................................212030.25605000060500
.......................................................................................................................................................................................................................................................................................................................AAGTGTTACA------------GTGATCG----------------------GAT.........................................................20202.805600000560
......................................................................................................................................................................................................................................................................................................................AAAGTGTTACA------------GTGATCG----------------------G...........................................................19202.4549260002300
................GCAACATAAGCTCTTTGGGT..................................................................................................................................................................................................................................................................................................................................................................................................2012.0021000100
...................................................................................................................................................................................................................................................................................................................................................................................CAAATATGCGCCGTTTTGTT...............................20201.703434000000
.......................................................................................................................................................................................................................................................................................................................AAGTGTTACA------------GTGATCG----------------------GA..........................................................19201.503000000300
............................................................................................................................................................................................................................................................................................................................................................................TTTAGTTCAAATATGCGCCGT.....................................21201.503000000300
.............................................................................................................................................................................................................................................................................................................................TACA------------GTGATCG----------------------GATTTAGTT...................................................20201.452900000290
..................................................................................................................................................................................................................................................................................................................................................................................TCAAATATGCGCCGTTTTG.................................19201.152300002300
............................................................................................................................................................................................................................................................................................................................................................................TTTAGTTCAAATATGCGCCG......................................20201.102200002200
.............CAAGCAACATAAGCTCTTTGGGTCT................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000001
...................ACATAAGCTCTTTGGGTCT................................................................................................................................................................................................................................................................................................................................................................................................1911.0010000010
...................................................................................................................................................................................................................................................................................................................................................................................CAAATATGCGCCGTTTTGTTC..............................21200.851700001700
.............................................................................................................................................................................................................................................................................................................................................................................................CCGTTTTGTTCGATAATCTG.....................20200.801616000000
...............................................................................................................................................................................................................................................................................................................................................................................AGTTCAAATATGCGCCGTTTT..................................21200.701414000000
...........................................................................................................................................................................................................................................................................................................................................................................ATTTAGTTCAAATATGCGCCGTT....................................23200.70148000600
.........................................................................................................................................................................................................................................................................................................................GTGTTACA------------GTGATCG----------------------GATTTA......................................................21200.551100001100
............................................................................................................................................................................................................................................................................................................................................................................TTTAGTTCAAATATGCGCCGTTT...................................23200.551111000000
......................................................................................................................................................................................................................................................................................................................AAAGTGTTACA------------GTGATCG----------------------GATTT.......................................................23200.4590000090
..............................................................................................................................................................................................................................................................................................................................................................................................CGTTTTGTTCGATAATCTGTT...................21200.4590000090
............................................................................................................................................................................................................................................................................................................................TTACA------------GTGATCG----------------------GATTTAGTTC..................................................22200.4088000000
..................................................................................................................................................................................................................................................................................................................................................CG----------------------GATTTAGTTCAAATATGCG.........................................21200.3570000700
..............................................................................................................................................................................................................................................................................................................................................TGATCG----------------------GATTTAGTTCAAAT..............................................20200.3066000000
.............................................................................................................................................................................................................................................................................................................................TACA------------GTGATCG----------------------GATTTAGT....................................................19200.3060000600
..........................................................................................................................................................................................................................................................................................................................................................................GATTTAGTTCAAATATGCGC........................................20200.2555000000
.............................................................................................................................................................................................................................................................................................................................TACA------------GTGATCG----------------------GATTTAGTTCAAA...............................................24200.2044000000
........................................................................................................................................................................................................................................................................................................................AGTGTTACA------------GTGATCG----------------------GATTTA......................................................22200.2040000400
...................................................................................................................................................................................................................................................................................................................................................G----------------------GATTTAGTTCAAATATGCGC........................................21200.1530300000
...........................................................................................................................................................................................................................................................................................................................................................................ATTTAGTTCAAATATGCGCCGT.....................................22200.1530000300
..............................................................................................................................................................................................................................................................................TCCCTTCCGCTTTTTTGCTCT...................................................................................................................................21200.1533000000
.............................................................................................................................................................................................................................................................................................................................TACA------------GTGATCG----------------------GATTTAGTTCA.................................................22200.1533000000
..................................................................................................................................................................................................................................................................................TTCCGCTTTTTTGCTCTTTATT..............................................................................................................................22200.1533000000
..........................................................................................................................................................................................................................................................................................................................TGTTACA------------GTGATCG----------------------GATTTAGT....................................................22200.1530030000
.......................................................................................................................................................................................................................................................................................................................................................................................TATGCGCCGTTTTGTTCG.............................18200.1020000020
...........................................................................................................................................................................................................................................................................................................................GTTACA------------GTGATCG----------------------GATTTAGTTC..................................................23200.1020000020
......................................................................................................................................................................................................................................................................................................................AAAGTGTTACA------------GTGATCG----------------------T...........................................................19200.1020000020
.........................................................................................................................................................................................................................................................................................................................................................................................................ATAATCTGTTTCCATCTAG..........19200.1022000000
.................................................................................................................................................................................................................................................................................................................................................TCG----------------------GATTTAGTTCAAATATGCGCCG......................................25200.0511000000
.................................................................................................................................................................................................................................................................................................................................................................................................TTTGTTCGATAATCTGTTTCC................21200.0510001000
........................................................................................................................................................................................................................................................................................................................................................................................................GATAATCTGTTTCCATCT............18200.0511000000
.......................................................................................................................................................................................................................................................................................................................................................................................................CGATAATCTGTTTCCATC.............18200.0511000000
.....................................................................................................................................................................................................................................................................................CGCTTTTTTGCTCTTTATTCAAT..........................................................................................................................23200.0511000000
.........................................................................................................................................................................................................................................................................................................................................................................................TGCGCCGTTTTGTTCGATAAA........................21200.0510000010
.................................................................................................................................................................................................................................................................................................................................................................................................TTTGTTCGATAATCTGTTTCCA...............22200.0510010000
..........................................................................................................................................................................................................................................................................................TTTTGCTCTTTATTCAATG.........................................................................................................................19200.0510100000
.............................................................................................................................................................................................................................................................................................................................................GTGATCG----------------------GATTTAGTTCAAAT..............................................21200.0510000010
..........................................................................................................................................................................................................................................................................................TTTTGCTCTTTATTCAATGCC.......................................................................................................................21200.0510100000
...........................................................................................................................................................................................................................................................................................................TGCCTT-ATAAAAAGTGTTACA------------GTGA.....................................................................................25200.0511000000
......................................................................................................................................................................................................................................................................................GCTTTTTTGCTCTTTATTCAAT..........................................................................................................................22200.0510000010
...........................................................................................................................................................................................................................................................................................................TGCCTT-ATAAAAAGTGTTACA------------GTGAT....................................................................................26200.0511000000
.....................................................................................................................................................................................................................................................................................CGCTTTTTTGCTCTTTATTCAATG.........................................................................................................................24200.0511000000
.......................................................................................................................................................................................................................................................................................CTTTTTTGCTCTTTATTCAAT..........................................................................................................................21200.0510000010
..................................................................................................................................................................................................................................................................................TTCCGCTTTTTTGCTCTTTAT...............................................................................................................................21200.0511000000
..................................................................................................................................................................................................................................................................................................................ATAAAAAGTGTTACA------------GTGATC...................................................................................21200.0511000000
...................................................................................................................................................................................................................................................................................................................................................................................................TGTTCGATAATCTGTTTC.................18200.0511000000
.....................................................................................................................................................................................................................................................................................................................................................................................................TTCGATAATCTGTTTCCATCTT...........22200.0511000000
droYak3
ATCTAGTA------------------------------------------------------------------------------------------------------------------------------------------------TACCCTTTTACTCTACGAGTAACGG-------GTATAA----ATA--------------------------------TAAT-------------------ATAAGGTTGTCAAATATCTCCCTTCCGCTTTTTTGCTCTTTATTCAATGCTTT-ATAAAAAGTGTTACA------------GTGATCG----------------------GATTTAGTTCAAATATGCGCCGTTTTGTTCGATAATCTGTTTCCATCTAGACGGCAACTTSizeHit CountTotal NormTotalM026
Head		M043
Female-body		M056
Embryo		V046
Embryo		V052
Head		V058
Head		V120
Male-body		SRR1275488
Male larvae		SRR1275486
Male prepupae		SRR1275484
Male prepupae		GSM1528802
follicle cells
............................................................................................................................................................................................................................................................................................................................TTACA------------GTGATCG----------------------GATTTAGTTCAAA...............................................25102.8028060000220000
............................................................................................................................................................................................................................................................................................................................TTACA------------GTGATCG----------------------GATTTAGTTCAAATA.............................................27102.40240100000140000
............................................................................................................................................................................................................................................................................................................................TTACA------------GTGATCG----------------------GATTTAGTTCA.................................................23112.0022031100170000
.........................................................................................................................................................................................................................................................................................................................................................................................TGCGCCGTTTTGTTCGATAATCTGTT...................26121.1714040000000010
..........................................................................................................................................................................................................................................................................................................................TGTTACA------------GTGATCG----------------------GATTTAGTTCA.................................................25110.55606000000000
............................................................................................................................................................................................................................................................................................................................TTACA------------GTGATCG----------------------GATTTAGTTCAAAT..............................................26100.40401000030000
.............................................................................................................................................................................................................................................................................................................................................................................................................TCTGTTTCCATCTAGACGGCAAC..23120.33404000000000
............................................................................................................................................................................................................................................................................................................................TTACA------------GTGATCG----------------------GATTTAGTTCAA................................................24100.30301010010000
.............................................................................................................................................................................................................................................................................................................................TACA------------GTGATCG----------------------GATTTAGTTCA.................................................22110.27300000030000
.............................................................................................................................................................................................................................................................................................................................................................................................................TCTGTTTCCATCTAGACGGCAACT.24110.27303000000000
...............................................................................................................................................................................................................................................................................................................TT-ATAAAAAGTGTTACA------------GTGATCG----------------------GAT.........................................................27150.27400000000004
...................................................................................................................................................................................................................................................................................................TTATTCAATGCTTT-ATAAAAAGTGT.........................................................................................................25120.25300300000000
.............................................................................................................................................................................................................................................................TAAGGTTGTCAAATATCTCCCTTCCGC..............................................................................................................................................27200.25503200000000
............................................................................................................................................................................................................................................................................................................................TTACA------------GTGATCG----------------------GATTTAGTTCAAATATG...........................................29100.20200000020000
.............................................................................................................................................................................................................................................................................................................................TACA------------GTGATCG----------------------GATTTAGTTCAAA...............................................24100.20201000010000
.............................................................................................................................................................................................................................................................................................................................TACA------------GTGATCG----------------------GATTTAGTTCAAATA.............................................26100.20201000010000
...................................................................................................................................................................................................................................................................................................................................................................................................TGTTCGATAATCTGTTTCCATCTAGA.........26110.18202000000000
..........................................................................................................................................................................................................................................................................................................................................................................................................TAATCTGTTTCCATCTAGACGGCAAC..26110.18202000000000
.........................................................................................................................................................................................................................................................................................................................................................................................TGCGCCGTTTTGTTCGATAATCTGT....................25120.17201100000000
.........................................................................................................................................................................................................................................................................................................................................................................................TGCGCCGTTTTGTTCGATAATCTGTTTC.................28120.17202000000000
.......................................................................................................................................................................................................................................................................................................................................................................................TATGCGCCGTTTTGTTCGATAATCTGT....................27120.17201100000000
.............................................................................................................................................................................................................................................................................................................................................................................................................TCTGTTTCCATCTAGACGGC.....20120.17201000010000
.............................................................................................................................................................................................................................................................................................................................................................................................................TCTGTTTCCATCTAGACGGCAA...22120.17201000010000
.......................................................................................................................................................................................................................................................................................................................................................................................TATGCGCCGTTTTGTTCGATAATCT......................25120.17201100000000
.......................................................................................................................................................................................................................................................................................................................................................................................TATGCGCCGTTTTGTTCGATAATCTG.....................26120.17201000010000
...........................................................................................................................................................................................................................................................................................................TGCTTT-ATAAAAAGTGTTACA------------GTGAT....................................................................................26140.14202000000000
............................................................................................................................................................................................................................................................................................................................TTACA------------GTGATCG----------------------GATTTAGTT...................................................21150.13200000110000
......................................................................................................................................................................................................................................................................................................................AAAGTGTTACA------------GTGATCG----------------------GATTTAGT....................................................26150.13201100000000
...................................................................................................................................................................................................................................................................................................................TAAAAAGTGTTACA------------GTGATCG----------------------GATT........................................................25160.13200100010000
..............................................................................................................................................................................................................................................................AAGGTTGTCAAATATCTCCCTTCCGC..............................................................................................................................................26200.10202000000000
...............................................................................................................................................................................................................................................................................................................................CA------------GTGATCG----------------------GATTTAGTTCAAATATG...........................................26100.10101000000000
...........................................................................................................................................................................................................................................................................................................................................................................................................AATCTGTTTCCATCTAGACGGCAACTT27100.10101000000000
............................................................................................................................................................................................................................................................................................................................................................................TTTAGTTCAAATATGCGCCGTT....................................22100.10100001000000
...............................................................................................................................................................................................................................................................................................................................................................................................................TGTTTCCATCTAGACGGCAACT.22110.09101000000000
.................................................................................................................................................................................................................................................................................................................................................................................................TTTGTTCGATAATCTGTTTCCATCTA...........26110.09101000000000
.....................................................................................................................................................................................................................................................................................................................................................................................................TTCGATAATCTGTTTCCATCTAGACGGC.....28110.09101000000000
........................................................................................................................................................................................................................................................................................................................................................................................................GATAATCTGTTTCCATCTAGA.........21110.09101000000000
......................................................................................................................................................................................................................................................................................................................................................................................................TCGATAATCTGTTTCCATCTAGACG.......25110.09101000000000
...........................................................................................................................................................................................................................................................................................TTTGCTCTTTATTCAATGCTTT-ATAAA...............................................................................................................27110.09101000000000
......................................................................................................................................................................................................................................................................................................................................................................................................TCGATAATCTGTTTCCATCTAGACGG......26110.09100100000000
............................................................................................................................................................................................................................................................................................................................TTACA------------GTGATCG----------------------GATTTAGTTCAAG...............................................25110.09101000000000
...............................................................................................................................................................................................................................................................................................................................................................................AGTTCAAATATGCGCCGTTTTGTTC..............................25110.09101000000000
......................................................................................................................................................................................................................................................................................................................................................................................................TCGATAATCTGTTTCCATCTAGACGGC.....27110.09100010000000
.............................................................................................................................................................................................................................................................................................................................................................................................................TCTGTTTCCATCTAGACGGCAACTT25110.09101000000000
.............................................................................................................................................................................................................................................................................................TGCTCTTTATTCAATGCTTT-ATAAAA..............................................................................................................26110.09101000000000
...................................................................................................................................................................................................................................................................................................................................................................................................TGTTCGATAATCTGTTTCCATCTAG..........25110.09101000000000
..................................................................................................................................................................................................................................................................................................................................................................................................TTGTTCGATAATCTGTTTCCATCTAGAC........28110.09101000000000
............................................................................................................................................................................................................................................................................................................................TTACA------------GTGATCG----------------------GATTTAGTTC..................................................22110.09100000010000
..............................................................................................................................................................................................................................................................................................................................ACA------------GTGATCG----------------------GATTTAGTTCA.................................................21110.09100000010000
.....................................................................................................................................................................................................................................................................TCAAATATCTCCCTTCCGCTTTTT.........................................................................................................................................24110.09101000000000
.....................................................................................................................................................................................................................................................................TCAAATATCTCCCTTCCGCTTTTTTGC......................................................................................................................................27110.09101000000000
...................................................................................................................................................................................................................................................................................................................................................................................................TGTTCGATAATCTGTTTCCATCTAGAC........27110.09101000000000
................................................................................................................................................................................................................................................................................................TCTTTATTCAATGCTTT-ATAAAAAGTG..........................................................................................................27110.09101000000000
..........................................................................................................................................................................................................................................................................................................................TGTTACA------------GTGATCG----------------------GATTTAGTTCT.................................................25110.09100000010000
.....................................................................................................................................................................................................................................................................................................................................................................................................TTCGATAATCTGTTTCCATCTAGACG.......26110.09101000000000
...............................................................................................................................................................................................................................................................................................CTCTTTATTCAATGCTTT-ATAAAAAG............................................................................................................26110.09101000000000
...............................................................................................................................................................................................................................................................................................................................................................................................................TGTTTCCATCTAGACGGCAAC..21120.08100000100000
..............................................................................................................................................................................................................................................................................................................................................................................................................CTGTTTCCATCTAGACGGC.....19120.08100001000000
................................................................................................................................................................................................................................................................................................................................................................................................TTTTGTTCGATAATCTGTTTCCATCT............26120.08101000000000
................................................................................................................................................................................................................................................................................................................................................................................................TTTTGTTCGATAATCTGTTTCCATC.............25120.08101000000000
...................................................................................................................................................................................................................................................................................................TTATTCAATGCTTT-ATAAAAAGTG..........................................................................................................24120.08100100000000
...................................................................................................................................................................................................................................................................................................TTATTCAATGCTTT-ATAAAAAGTGTT........................................................................................................26120.08101000000000
............................................................................................................................................................................................................................................................................................................................................................................................GCCGTTTTGTTCGATAATCTGT....................22120.08100000100000
.....................................................................................................................................................................................................................................................................................................................................................................................AATATGCGCCGTTTTGTTCGATAATC.......................26120.08100100000000
....................................................................................................................................................................................................................................................................................................................................................................................AAATATGCGCCGTTTTGTTCGA............................22140.07100000100000
.......................................................................................................................................................................................................................................................................................................................................................................................TATGCGCCGTTTTGTTCGATAAAA.......................24140.07101000000000
...........................................................................................................................................................................................................................................................................................................TGCTTT-ATAAAAAGTGTTACA------------GTGA.....................................................................................25140.07101000000000
...............................................................................................................................................................................................................................................................................................................TT-ATAAAAAGTGTTACA------------GTGATCG----------------------GA..........................................................26150.07100000010000
..............................................................................................................................................................................................................................................................................................................TTT-ATAAAAAGTGTTACA------------GTGATCG----------------------GATT........................................................29150.07100000010000
................................................................................................................................................................................................................................................................................................................T-ATAAAAAGTGTTACA------------GTGATCG----------------------GAT.........................................................26150.07100000010000
................................................................................................................................................................................................................................................................................................................T-ATAAAAAGTGTTACA------------GTGATCG----------------------GATT........................................................27150.07101000000000
...................................................................................................................................................................................................................................................................................................................TAAAAAGTGTTACA------------GTGATCG----------------------GATTT.......................................................26150.07100100000000
..........................................................................................................................................................................................................................................................................................................................TGTTACA------------GTGATCG----------------------GATTTAGTT...................................................23150.07100000010000
..........................................................................................................................................................................................................................................................................................................................TGTTACA------------GTGATCG----------------------GATTTAG.....................................................21160.06100000100000
......................................................................................................................................................................................................................................................................................................................AAAGTGTTACA------------GTGATCG----------------------GAT.........................................................21160.06100000100000
............................................................................................................................................................................................................................................................................................................................TTACA------------GTGATCG----------------------GATTTAGT....................................................20160.06100000010000
.......................................................................................................................................................................................................................................AT-------------------ATAAGGTTGTCAAATATCTCCC....................................................................................................................................................24190.05101000000000
........................................................................................................................................................................................................................................T-------------------ATAAGGTTGTCAAATATCTCCCTTCCGC..............................................................................................................................................29200.05101000000000
droSec2
TTGACGGCCAACACAAGCAACATAAGCTCATTGGGTCTTCAAAACGATAGGTAAG-----------------------------------------------AATAATTAGATAGCTTCACCTTTATGCTTCTTAGTTAATAC------------------------------------------------------------------------------------G----------CC-------TAC------------CA-----------------------------------AACAGATCTGAAAAGATATATTCTAACTTTGGGA-A--------------------------------------------------------------------------------------TSizeHit CountTotal NormTotalM054
Female-body		V113
Male-body		V114
Embryo		V115
Head
...............AGCAACATAAGCTCATTGGGTCT................................................................................................................................................................................................................................................................................................................................................................................................2311.0010100
..............AAGCAACATAAGCTCATTGGGTCTT...............................................................................................................................................................................................................................................................................................................................................................................................2511.0010010
droSim2
TTGACGGCCAACACAAGCAACATAAGCTCATTGGGTCTTCAAAACGATAGGTAAG-----------------------------------------------AATAATTAGATAACTTCACCTTTACTC-TCTTAGTTAATAC------------------------------------------------------------------------------------G----------CC-------TAC------------CA-----------------------------------AACAGATCTGAAAAGATATATTCTAACTTTGGGA-A--------------------------------------------------------------------------------------TSizeHit CountTotal NormTotalM023
Head		M024
Male-body		M025
Embryo		M053
Female-body		O001
Testis		O002
Head		SRR553485
Ovary		SRR553486
Ovary		SRR553487
Ovary		SRR553488
Ovary		SRR618934
Ovary		V044
Embryo		SRR902008
Ovary		SRR902009
Testis		SRR1275487
Male larvae		SRR1275485
Male prepupae		SRR1275483
Male prepupae
.............................ATTGGGTCTTCAAAACGA.......................................................................................................................................................................................................................................................................................................................................................................................1811.00100000010000000000
.................CAACATAAGCTCATTGGGTC.................................................................................................................................................................................................................................................................................................................................................................................................2011.00100100000000000000
.................CAACATAAGCTCATTGGGTCTT...............................................................................................................................................................................................................................................................................................................................................................................................2211.00100100000000000000
.........................................................................................................................................TAATAC------------------------------------------------------------------------------------G----------CC-------TAC------------CA-----------------------------------AACAGATCTGAAAA.............................................................................................................2811.00100000001000000000
TTGACGGCCAACACAAGCAA..................................................................................................................................................................................................................................................................................................................................................................................................................2011.00100000000000001000
...........................TCATTGGGTCTTCAAAACGATAGTA..................................................................................................................................................................................................................................................................................................................................................................................2511.00100000000010000000
dm3
TTGACGGCCAACACAAGCAACATAAACTCTTTGGGTCTTCAAAACGATAGGTAAGATA------------------------------------------------ATTAGATAACTTCACCTTTACTC-TCTTAGTTAATAC------------------------------------------------------------------------------------GTATGTATAAATC-------TAC------------CA-----------------------------------AACAGATCTAAA-------------------------------------------------------------------------------------------------------------AASizeHit CountTotal NormTotalGSM154618
Ovary		GSM154620
Ovary		GSM154621
Ovary		GSM154622
Ovary		GSM180328
Head		GSM180329
Mixed-body		GSM180330
Embryo		GSM180331
Embryo		GSM180332
Embryo		GSM180333
Embryo		GSM180334
Larvae		GSM180335
Disc		GSM180336
Pupae		GSM180337
S2		GSM231091
Ovary		GSM239041
Head		GSM239050
Head		GSM239051
S2		GSM239052
S2		GSM246084
Head		GSM266765
S2		GSM280082
Ovary		GSM280083
Ovary		GSM280084
Ovary		GSM280085
Testis		GSM280086
Ovary		GSM280087
S2-NP		GSM280088
S2-NP		GSM312995
Head		GSM313160
Head		GSM313161
Head		GSM313162
Head		GSM313163
Head		GSM313164
Head		GSM313165
Head		GSM343287
Embryo		GSM379050
Ovary		GSM379051
Ovary		GSM379052
Ovary		GSM379053
Ovary		GSM379054
Ovary		GSM379055
Ovary		GSM379056
Ovary		GSM379057
Ovary		GSM379058
Ovary		GSM379059
Ovary		GSM379060
Ovary		GSM379061
Ovary		GSM379062
Ovary		GSM379063
Ovary		GSM379064
Ovary		GSM379065
Ovary		GSM379066
Ovary		GSM379067
Ovary		GSM424739
S2		GSM424740
S2		GSM424741
S2		GSM467729
Female-body		GSM467730
Female-body		GSM467731
Female-body		M002
CS		M003
Male-body		M004
Male-body		M005
ML-DmD32		M006
ML-DmD32		M029
OSC		M030
OSC		M031
OSC		M032
S2-R+		M033
S2-R+		M034
S2-R+		M035
S2-R+		M036
S2-R+		M037
S2-R+		M038
S2-R+		M039
S2-R+		M048
S2-R+		OSS2
OSS		OSS6
OSS		OSS7
OSS		OSS8
OSS		S1
Head		S10
Embryo		S11
Embryo		S12
Embryo		S13
Embryo		S14
Embryo		S15
S2-GMR		S16
Kc		S17
Larvae		S18
Larvae		S19
Pupae		S2
Head		S20
Pupae		S21
Disc		S22
Head		S23
Female-body		S24
Male-body		S25
Larvae		S26
Larvae		S27
Pupae		S28
Pupae		S29
Head		S3
Male-body		S30
S2-GMR		S31
S2		S32
S2		S33
Kc		S34
Kc		S35
Kc		S4
Female-body		S5
Disc		S6
Embryo		S7
Embryo		S8
S2		S9
Embryo		SRR001337
Head		SRR001338
Head		SRR001339
Head		SRR001340
Head		SRR001341
Head		SRR001342
Head		SRR001343
Head		SRR001344
Head		SRR001345
Head		SRR001346
Head		SRR001347
Head		SRR001348
Head		SRR001349
Head		SRR001664
Head		SRR010951
Ovary		SRR010952
Ovary		SRR010953
Ovary		SRR010954
Ovary		SRR010955
Ovary		SRR010956
Ovary		SRR010957
Ovary		SRR010958
Ovary		SRR010959
Ovary		SRR010960
Ovary		SRR014268
Embryo		SRR014269
Embryo		SRR014270
Embryo		SRR014271
Embryo		SRR014272
Embryo		SRR014273
Ovary		SRR014274
Ovary		SRR014275
Ovary		SRR014276
Ovary		SRR014277
Ovary		SRR014278
Ovary		SRR014279
Ovary		SRR014280
Ovary		SRR014281
Ovary		SRR014282
Ovary		SRR023197
S2		SRR023399
S2		SRR023400
S2		SRR023402
S2		SRR023407
S2		SRR029028
S2		SRR029029
S2		SRR029030
S2		SRR029031
S2		SRR029032
S2		SRR029033
S2		SRR029608
Head		SRR029633
Head		SRR030145
gb3		SRR031692
Head		SRR031693
Head		SRR031694
Head		SRR031696
Head		SRR031697
Head		SRR031698
Head		SRR031699
Head		SRR031700
Head		SRR031701
Head		SRR031702
Head		SRR031703
Head		SRR031704
Head		SRR032092
S2		SRR032093
S2		SRR032094
S2		SRR032095
S2-NP		SRR032096
S2-NP		SRR032152
Head		SRR060643
Testis		SRR060644
Ovary		SRR060645
Testis		SRR060646
Ovary		SRR060647
Ovary		SRR060648
Ovary		SRR060649
Ovary		SRR060650
Testis		SRR060651
Ovary		SRR060652
Testis		SRR060653
Ovary		SRR065151
Ovary		SRR065152
Ovary		SRR065153
Ovary		SRR065154
Ovary		SRR065155
Ovary		SRR065800
Ovary		SRR065801
Ovary		SRR065802
Ovary		SRR065803
Ovary		SRR065804
Ovary		SRR065805
Ovary		SRR065806
Ovary		SRR065807
Ovary		SRR097865
S2-NP		SRR097866
S2-NP		SRR097867
S2-NP		SRR298536
Ovary		SRR298537
Ovary		SRR298711
Ovary		SRR298712
Ovary		SRR317110
Ovary		SRR317111
Ovary		SRR317112
Ovary		SRR317113
Ovary		SRR317114
Ovary		SRR317115
Ovary		SRR317116
Ovary		SRR317117
Ovary		SRR341115
S2		SRR341116
S2		SRR341117
S2		SRR341118
S2		SRR351332
Mixed-body		SRR351333
Mixed-body		T004
OSC		T005
CME-L1		V001
Embryo		V002
Embryo		V003
S2		V006
Female-body		V007
Head		V008
S2		V009
CME-L1		V010
ML-DmD20-C5		V011
Sg4		V012
Male-body		V013
Head		V014
DTT		V015
DreRFHV		V018
Kc167		V019
GM2		V020
S2-R+		V021
ML-DmD21		V022
ML-DmD32		V023
Head		V024
Kc167		V025
S2-R+		V026
1182-2H		V027
ML-DmD21		V028
CME-W1-Cl.8+		V029
ML-DmD9		V030
ML-DmD8		V031
GM2		V032
S1		V033
CME-W1-Cl.8+		V034
ML-DmD16-C3		V035
ML-DmD32		V036
ML-DmD20-C5		V037
S2		V038
S2		V063
Ovary		V0632
Ovary		V064
Ovary		V0642
Ovary		V065
Ovary		V0652
Ovary		V066
Ovary		V0662
Ovary		V067
S2-NP		V073
mbn2		V074
S3		V075
ML-DmBG1-C1		V076
ML-DmBG3-C2		V077
Head		V078
Head		V079
Head		V080
Head		V081
Embryo		V082
Embryo		V083
Male-body		V084
Female-body		V085
CME-W2		V086
Female-body		V088
Ovary		V0882
Ovary		V089
Ovary		V0892
Ovary		V090
Male-body		V091
fGS/OSS		V092
Male-body		V093
Male-body		V094
S2-R+		V095
S2-R+		V096
Ovary		V097
Ovary		V098
Ovary		V125
ML-DmD9		V126
CME-L1		V127
G2		V128
S3		V129
ML-DmBG1-C1		V130
ML-DmBG3-C2		V131
ML-DmD16-C3		V132
ML-DmD32		V133
Sg4		V134
ML-DmD8		V135
CME-W2		V136
Male-body		V137
Head		V138
Male-body		V139
Female-body		V140
Female-body		V141
Female-body		V142
Female-body		V144
OSC		V145
S2		V146
S1		V147
1182-2H		V148
mbn2		GSM1528798
follicle cells
...........................TCTTTGGGTCTTCAAAACGATAGTA..................................................................................................................................................................................................................................................................................................................................................................................2512.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................AACTCTTTGGGTCTTCAAAACGAT......................................................................................................................................................................................................................................................................................................................................................................................2412.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................AACTCTTTGGGTCTTCAAAACGATAGT...................................................................................................................................................................................................................................................................................................................................................................................2712.0020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000020000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................TCTTTGGGTCTTCAAAACGATAGTAC.................................................................................................................................................................................................................................................................................................................................................................................2612.0020000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................................................................................................................................TAATAC------------------------------------------------------------------------------------GTATGTATAAATC-------TA.............................................................................................................................................................................2112.0020000000000000000000000000000000000000000000000000000000001100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................CTTTGGGTCTTCAAAACGATA.....................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......CCAACACAAGCAACATAAACTC.........................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................ACTCTTTGGGTCTTCAAAACGATA.....................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........................ACTCTTTGGGTCTTCAAAACG........................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........................TCTTTGGGTCTTCAAAACG........................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................CAACATAAACTCTTTGGGTCTTCA.............................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000
.TGACGGCCAACACAAGCAACATAAACTC.........................................................................................................................................................................................................................................................................................................................................................................................................2811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........ACACAAGCAACATAAACTCTTT......................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................ACATAAACTCTTTGGGTCTTCA.............................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.TGACGGCCAACACAAGCA...................................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................CTTTGGGTCTTCAAAACGATAG....................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
............................CTTTGGGTCTTCAAAACGA.......................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........AACACAAGCAACATAAACTCTTTGGG...................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.TGACGGCCAACACAAGCAACATAAACA..........................................................................................................................................................................................................................................................................................................................................................................................................2711.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.........AACACAAGCAACATAAACTCTT.......................................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............................TTTGGGTCTTCAAAACGATAGTAC.................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...................ACATAAACTCTTTGGGTCTTCAA............................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................GCAACATAAACTCTTTGG....................................................................................................................................................................................................................................................................................................................................................................................................1811.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
......................TAAACTCTTTGGGTCTTCAAAACGA.......................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
...........CACAAGCAACATAAACTCTTTGGGTC.................................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000
...........CACAAGCAACATAAACTCTTTGGG...................................................................................................................................................................................................................................................................................................................................................................................................2411.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.....GGCCAACACAAGCAACATAAA............................................................................................................................................................................................................................................................................................................................................................................................................2111.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.................CAACATAAACTCTTTGGGTCTTCAA............................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................AAACTCTTTGGGTCTTCAAA...........................................................................................................................................................................................................................................................................................................................................................................................2011.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
........................AACTCTTTGGGTCTTCAAAACGATAG....................................................................................................................................................................................................................................................................................................................................................................................2611.0010000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
TTGACGGCCAACACAAGCAACAA...............................................................................................................................................................................................................................................................................................................................................................................................................2311.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
................................GGGTCTTCAAAACGATAGT...................................................................................................................................................................................................................................................................................................................................................................................1911.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.............CAAGCAACATAAACTCTTTGGGTCT................................................................................................................................................................................................................................................................................................................................................................................................2511.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
..........................CTCTTTGGGTCTTCAAAACGAT......................................................................................................................................................................................................................................................................................................................................................................................2211.0010000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000100000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
.......................AAACTCTTTGGGTCTTCACT...........................................................................................................................................................................................................................................................................................................................................................................................2030.3310000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000001000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000000
droEug1
TCTTCAAA-----AATGT------------------------------TCTAAAAATATTTAAAAAGTTGTTATTA-ATATT--GATTA----------ATA-----------------------------TATTG--C---AA------------------------------------------------AAATA-AAAAA--TATTATAAAAATATTT-------------------------------TTTAGGTTGTCAAAAAAGTCT-T-------------------------GCGGT-ATAAAATTGGTTACA------------ATAATGC------------------CGATGATTCAAGTCAAATATGCGCCGTTTTGTTCGATGACGCGTTCCCAACGAGATGCCAACTTSizeHit CountTotal NormTotal
No Reads
droBia1
AAATTGTTTAATTTTAGT--------------------------------------------------------------------------------------------------------------------------------------------------TTACTACTATCTT-------GTTTATCGAAACT-AAAAT--TATTTTGGCAATACTTAT-----------------CTGATTTATCGTAGTAGGTTGTCAAAAAAGTTC-TTCTGTGTTTTAATTGAATATTCAATTGTTC-ATAAAAGAGGATACA------------AAAACGC----------------------TAATCAGGTCAAATATGC------------------------------------------SizeHit CountTotal NormTotal
No Reads
droTak1
TAT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------ATTGGGTTGGCAAGAAAGTCA-TGTCGTTTTTTTTTTTTT-----------------AATATTTTCAAA------------GTTGATTTATTTATATCAGGACTTATAATTAA-TCAATTATGTATTGGCCGTTTTGTTCGACCACTAATGACCATCTCTCGGGCAACTGSizeHit CountTotal NormTotal
No Reads
droEle1
AAATAGTA-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------AAAT-------------------ATAAGGTTATCAAATATCTCTCTTCCGCAATTTTGCTCTTTATTCAGTGCTTT-ATGAAAAGTGTTACA------------GTGATCG----------------------GATTTACATCAAATATGCTCCGTTTTGTTTGATAACCTGTTTCCATGTAGACAGCAACTTSizeHit CountTotal NormTotal
No Reads
droRho1
GTTTTTAAGCAAATAGGCATTATAATCAAATATTTAATTAATTATGATAATTAAT-----------------------------------------------CATAATTAAATCAAATA-------------------------TT-----TTAAGCTTTTTGTCTAC-------ACAGAAATTGTTTCT-------------------------------------TTATAT-------------------ATTAGGTTGTCAAATAACTCCCTTTCGCTTTTTTGCTCTTTATTCAATGCTTT-ATAAAAATTGATACA------------GTGAACG----------------------GATTTAGCTAAAATATGCGCCGTTTCGTTCGATAATGTGTTCCCATTTAGACTGCAACTTSizeHit CountTotal NormTotal
No Reads
droFic1
TTGGACAGTCAGAACTGCAGGG------------------------------------------------TCAACG-TTAC------TTGAATCTGTGT---------------------------------------TCAACTTACTAGAAGAACCTTAT------------------------------------------------------------------AATTAT-------------------ATAAGGTTGTCAAAAAAGTCT-TGCGGTATTTTTATTGAATTTTCAATTGTTC-ATAAA-ATAGTTATA------------ATAATGC----------------------GATTTAAGTCAAATATGCGCCGTTATGTTCGATGATGAGTTTCCAACGAGATGCCAACTTSizeHit CountTotal NormTotal
No Reads
droKik1
TAGGTATAATATTTACATAATT----------------------------------------------------AG-TTTTA--AGCTT----------AAT-----------------------------TTTAG---------------------------GGTATTATTTACAG----------------------------------------------AGAGATATAT-------------------ATAAGGTTGTCAAAAAAGTCT-TGCGGTATTTTTATTGAATTTTCAATTGTTC-ATAAAATTGGTTATA------------ATAATGT----------------------GATTTAAGTCAAATATGCGCCGTTTTGTTCGATAACGAATTCCTAACGAGATGCCATCTTSizeHit CountTotal NormTotal
No Reads
droAna3
GGGAAGTTGTGCA--------A------------------------------------------------TTTTCC-TTATT--GGCTT----------ATT-----------------------------TGTGG--G---CATA---------------------------------------------TTAA----AAAAAA------------------ATATGTATAT-------------------ATAAGGTTGTCAAATATCTCCCTTCCGCTTTTTTGCTCTTTATTCAATGCTTT-ATAAAAAGTGTTACA------------GTGATCG----------------------GATTTAGTTAAAATATGCGCCGTTTTGTTCGATAATCTGTTTCCATCTAGACGGCAACTTSizeHit CountTotal NormTotalM044
Female-body		M058
Embryo		V039
Embryo		V055
Head		V105
Male-body		V106
Head
..................................................................................................................................................................................................................................................................................................................................................................................................TTGTTCGATAATCTGTTTCCA...............21201.45292801000
.................................................................................................................................................................................................................................................................................................................................................................................................................TTTCCATCTAGACGGCAACTT21201.10222200000
...............................................................................................................................................................................................................................................................................................................................................................................................................TGTTTCCATCTAGACGGCAAC..21200.95191810000
.....................................................................................................................................................................................................................................................................TCAAATATCTCCCTTCCGCTTTTTTGC......................................................................................................................................27200.5511380000
.......................................................................................................................................................................................................................................................................................................................................................................................................CGATAATCTGTTTCCATCTAG..........21200.50101000000
..................................................................................................................................................................................................................................................................................................................................................................................................................TTCCATCTAGACGGCAACTT20200.459900000
..................................................................................................................................................................................................................................................................................................................................................................................................TTGTTCGATAATCTGTTTCC................20200.408800000
.....................................................................................................................................................................................................................................................................................................................................................................................................TTCGATAATCTGTTTCCATCT............21200.408800000
..........................................................................................................................................................................................................................................................................................................................TGTTACA------------GTGATCG----------------------GATTTAG.....................................................21200.357700000
............................................................................................................................................................................................................................................................................................................................................................................................GCCGTTTTGTTCGATAATCTG.....................21200.306500001
......................................................................................................................................................................................................................................................................................................................AAAGTGTTACA------------GTGATCG----------------------GAT.........................................................21200.306501000
............................................................................................................................................................................................................................................................................................................................TTACA------------GTGATCG----------------------GATTTAGTT...................................................21200.255300011
..........................................................................................................................................................................................................................................................................................................................................................................................................TAATCTGTTTCCATCTAGACG.......21200.255500000
.......................................................................................................................................................................................................................................................................................................................AAGTGTTACA------------GTGATCG----------------------GATT........................................................21200.255310001
................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCCATCTAGACGGCAACT.21200.204400000
.................................................................................................................................................................................................................................................................................................................................................................................................TTTGTTCGATAATCTGTTTCCA...............22200.204400000
..............................................................................................................................................................................................................................................................................................................................................................................................CGTTTTGTTCGATAATCTGTT...................21200.204310000
....................................................................................................................................................................................................................................................................................................................................................................................................GTTCGATAATCTGTTTCCATC.............21200.204400000
.............................................................................................................................................................................................................................................................................................................................................................................................CCGTTTTGTTCGATAATCTG.....................20200.204400000
.............................................................................................................................................................................................................................................................................................TGCTCTTTATTCAATGCTTT-A...................................................................................................................21200.204400000
............................................................................................................................................................................................................................................................................................................................TTACA------------GTGATCG----------------------GATTTAGT....................................................20200.153300000
.....................................................................................................................................................................................................................................................................TCAAATATCTCCCTTCCGCTTTTTTGCTC....................................................................................................................................29200.153120000
.............................................................................................................................................................................................................................................................................................................................................................................................................TCTGTTTCCATCTAGACGGCA....21200.153300000
..................................................................................................................................................................................................................................................................................................................................................................................................TTGTTCGATAATCTGTTTCCATCTAG..........26200.153300000
..................................................................................................................................................................................................................................................................................................................................................................................................TTGTTCGATAATCTGTTTCCATCTAGACG.......29200.102200000
.........................................................................................................................................................................................................................................................................................TTTTTGCTCTTTATTCAATGC........................................................................................................................21200.102200000
.......................................................................................................................................................................................................................................................................................................................AAGTGTTACA------------GTGATCG----------------------GATTTAGT....................................................25200.102010010
..........................................................................................................................................................................................................................................................................................TTTTGCTCTTTATTCAATGCT.......................................................................................................................21200.102200000
...........................................................................................................................................................................................................................................................................................................................GTTACA------------GTGATCG----------------------GATTTAG.....................................................20200.102200000
..............................................................................................................................................................................................................................................................................................................................................................................................................CTGTTTCCATCTAGACGGCAA...21200.102200000
..........................................................................................................................................................................................................................................................................................................................TGTTACA------------GTGATCG----------------------GATTTAGT....................................................22200.102101000
............................................................................................................................................................................................................................................................................................................................................................................................................ATCTGTTTCCATCTAGACGGC.....21200.102200000
.................................................................................................................................................................................................................................................................................................................................................................................................TTTGTTCGATAATCTGTTTCCATCTAG..........27200.102200000
.....................................................................................................................................................................................................................................................................TCAAATATCTCCCTTCCGCTTTTTTG.......................................................................................................................................26200.102020000
.............................................................................................................................................................................................................................................................................................................................................................................................CCGTTTTGTTCGATAATCTGT....................21200.102200000
...................................................................................................................................................................................................................................................................................................................................................................................................TGTTCGATAATCTGTTTCCAT..............21200.102200000
...............................................................................................................................................................................................................................................................................................................................................................................................................TGTTTCCATCTAGACGGCA....19200.102200000
.......................................................................................................................................................................................................................................................................................................................................................................................................CGATAATCTGTTTCCATCTA...........20200.102200000
...............................................................................................................................................................................................................................................................................................................................................................................................................TGTTTCCATCTAGACGGCAA...20200.102200000
..............................................................................................................................................................................................................................................................................................................................................................................................................CTGTTTCCATCTAGACGGCA....20200.102200000
.......................................................................................................................................................................................................................................................................................................................................................................................TATGCGCCGTTTTGTTCGATAATCTG.....................26190.051100000
............................................................................................................................................................................................................................................................................................................................................................................................................ATCTGTTTCCATCTAGACGG......20200.051100000
...............................................................................................................................................................................................................................................................................................................................................................................................................TGTTTCCATCTAGACGGC.....18200.051100000
..............................................................................................................................................................................................................................................................................................................TTT-ATAAAAAGTGTTACA------------GTGATCG----------------------GAT.........................................................28200.051000010
......................................................................................................................................................................................................................................................................................................................AAAGTGTTACA------------GTGATCG----------------------GA..........................................................20200.051100000
................................................................................................................................................................................................................................................................................................................................................................................................TTTTGTTCGATAATCTGTTTCCATC.............25200.051010000
.................................................................................................................................................................................................................................................................................................................................................................................................................TTTCCATCTAGACGGCAACT.20200.051100000
.......................................................................................................................................................................................................................................................................................................................AAGTGTTACA------------GTGATCG----------------------GATTT.......................................................22200.051000001
.............................................................................................................................................................................................................................................................................................................................................................................................CCGTTTTGTTCGATAATCTGTC...................22200.051010000
........................................................................................................................................................................................................................................................................................................................................................................................................GATAATCTGTTTCCATCT............18200.051100000
...............................................................................................................................................................................................................................................................................................................................................................................................GTTTTGTTCGATAATCTGTTT..................21200.051100000
.......................................................................................................................................................................................................................................................................................................................AAGTGTTACA------------GTGATCG----------------------GAT.........................................................20200.051100000
...........................................................................................................................................................................................................................................................................................TTTGCTCTTTATTCAATGCTTT-....................................................................................................................22200.051100000
..............................................................................................................................................................................................................................................................................TCCCTTCCGCTTTTTTGCTCTTTATTC.............................................................................................................................27200.051010000
............................................................................................................................................................................................................................................................................................................................................................................................................ATCTGTTTCCATCTAGACG.......19200.051100000
................................................................................................................................................................................................................................................................................................................................................................................................................GTTTCCATCTAGACGGCAAC..20200.051100000
...........................................................................................................................................................................................................................................................................................................................GTTACA------------GTGATCG----------------------GATTTAGTT...................................................22200.051000001
.................................................................................................................................................................................................................................................................................................................................................................................................TTTGTTCGATAATCTGTTTCC................21200.051100000
.....................................................................................................................................................................................................................................................................TCAAATATCTCCCTTCCGCTTTT..........................................................................................................................................23200.051100000
...................................................................................................................................................................................................................................................................TGTCAAATATCTCCCTTCCGCTTTTTTG.......................................................................................................................................28200.051100000
...................................................................................................................................................................................................................................................................................................................TAAAAAGTGTTACA------------GTGATCG----------------------GAA.........................................................24200.051100000
................................................................................................................................................................................................................................................................................................................T-ATAAAAAGTGTTACA------------GTGATCG----------------------GA..........................................................25200.051000010
....................................................................................................................................................................................................................................................................................CCGCTTTTTTGCTCTTTATTCA............................................................................................................................22200.051100000
......................................................................................................................................................................................................................................................................................................................AAAGTGTTACA------------GTGATCG----------------------G...........................................................19200.051000010
.......................................................................................................................................................................................................................................................................................................................AAGTGTTACA------------GTGATCG----------------------A...........................................................18200.051000001
..........................................................................................................................................................................................................................................................................................................................................................................................................TAATCTGTTTCCATCTAGACGGCAA...25200.051100000
.......................................................................................................................................................................................................................................................................................................................AAGTGTTACA------------GTGATCG----------------------GT..........................................................19200.051100000
.............................................................................................................................................................................................................................................................................................................................TACA------------GTGATCG----------------------GATTTAGTT...................................................20200.051001000
.......................................................................................................................................................................................................................................................................................CTTTTTTGCTCTTTATTCAATG.........................................................................................................................22200.051100000
......................................................................................................................................................................................................................................................................................................................................................................................................TCGATAATCTGTTTCCATCT............20200.051100000
...............................................................................................................................................................................................................................................................................................................................................................................................................TGTTTCCATCTAGACGGCAACT.22200.051100000
........................................................................................................................................................................................................................................................................................TTTTTTGCTCTTTATTCAATGC........................................................................................................................22200.051010000
.....................................................................................................................................................................................................................................................................................................................AAAAGTGTTACA------------GTGATCG----------------------GA..........................................................21200.051000010
...........................................................................................................................................................................................................................................................................................................................GTTACA------------GTGATCG----------------------GATTTAGTC...................................................22200.051010000
........................................................................................................................................................................................................................................................................................................................AGTGTTACA------------GTGATCG----------------------GATTTAGTT...................................................25200.051100000
.............................................................................................................................................................................................................................................................TAAGGTTGTCAAATATCTCCCTTCCGC..............................................................................................................................................27200.051100000
...................................................................................................................................................................................................................................................................................................................TAAAAAGTGTTACA------------GTGATCG----------------------GATT........................................................25200.051100000
..............................................................................................................................................................................................................................................................................TCCCTTCCGCTTTTTTGCTCTTTATC..............................................................................................................................26200.051010000
......................................................................................................................................................................................................................................................................................................................................................................................................TCGATAATCTGTTTCCATCTA...........21200.051100000
...................................................................................................................................................................................................................................................................................................TTATTCAATGCTTT-ATAAAGT.............................................................................................................21200.051100000
....................................................................................................................................................................................................................................................................................................................................................................................................GTTCGATAATCTGTTTCCAT..............20200.051100000
................................................................................................................................................................................................................................................................................................................T-ATAAAAAGTGTTACA------------GTGATCG----------------------GATT........................................................27200.051000010
droBip1
GGTAAGGT-ATTACAATTTT---------TTTTTTAA---------------------------------TTTTTT-TTATT--TTTTA----------AAT-----------------------------TGAAT--G---CA-------------------------------------------------------------------------------------TAAT-------------------ATAAGGTTGTCAAATATCTCCCTTCCGCTTTTTTGCTCTTTATTCAATGCTTT-ATAAAAAGTGTTACA------------GTGATCC----------------------GATTTAGTTGAAATATGCGCCGTTTTGTTCGATAATCCGTTTCCATCTAGACGGCAACTTSizeHit CountTotal NormTotal
No Reads
dp5
TTATCGAGCAATTCAAACAATATGGGCTCTTTGGGCCTGCAAAATGATGGGTAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTSizeHit CountTotal NormTotalM022
Male-body		M040
Female-body		M059
Embryo		M062
Head		V043
Embryo		V051
Head		V112
Male-body		SRR902010
Ovary		SRR902011
Testis		SRR902012
CNS imaginal disc
.........................GCTCTTTGGGCCTGCAAAATGATG.....................................................................................................................................................................................................................................................................................................................................................................................2411.0010100000000
.........AATTCAAACAATATGGGCTCTTTGGGCCT................................................................................................................................................................................................................................................................................................................................................................................................2911.0010100000000
.TATCGAGCAATTCAAACAATATGGG............................................................................................................................................................................................................................................................................................................................................................................................................2511.0010010000000
.............CAAACAATATGGGCTCTTTGGGCC.................................................................................................................................................................................................................................................................................................................................................................................................2411.0010010000000
droPer2
TTATCGAGCAATTCAAACAATATGGGCTCTTTGGGCCTGCAAAATGATGGGTAA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTSizeHit CountTotal NormTotalM021
Embryo		M042
Female-body		V042
Embryo		V050
Head		V057
Head		V111
Male-body
.........AATTCAAACAATATGGGCTCTTTG.....................................................................................................................................................................................................................................................................................................................................................................................................2411.001010000
.............CAAACAATATGGGCTCTTTGGGC..................................................................................................................................................................................................................................................................................................................................................................................................2311.001100000
...........................TCTTTGGGCCTGCAAAATGATGGTA..................................................................................................................................................................................................................................................................................................................................................................................2511.001001000
droWil2
ATAAATAAGTATATATATGTAG------------------------------------------------ATATTT-ATAT------CTAATTATAAAG---------------------------------------TATACATA---------------------------------------------TAAGTATAA-----------------------ATATGTATAT-------ATAAGTTTTTATATTGGTTCGTTTAATAAGTAA-TATCGTTTTTTTAGTGCAATTCAAATGGG-ATTTTTT----------TTTATTTTATA-AAACGTT----------------------TTATGAAATTATGTATTCTCCATTTCGCTCTGTA-CCTTTT---------GCTATAATTTSizeHit CountTotal NormTotalM020
Head		M045
Female-body		V117
Male-body		V118
Embryo		V119
Head
No Reads
droVir3
TTAACTAGCAACTCAAGCAACATGGGCCCGCTCGGCCTACAAAACGATGGGTCAGTAAACAAA-------T---GCTATTATT-------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TASizeHit CountTotal NormTotalM027
Male-body		M028
Head		M047
Female-body		M061
Embryo		SRR060654
Ovary		SRR060655
Testis		SRR060656
Ovary		SRR060657
Testis		SRR060658
Ovary		SRR060659
Testis		SRR060660
Ovary		SRR060661
Embryo		SRR060662
Embryo		SRR060663
Embryo		SRR060664
Male-body		SRR060665
Female-body		SRR060666
Male-body		SRR060667
Female-body		SRR060668
Male-body		SRR060669
Female-body		SRR060670
Testis		SRR060671
Male-body		SRR060672
Female-body		SRR060673
Ovary		SRR060674
Ovary		SRR060675
Ovary		SRR060676
Ovary		SRR060677
Ovary		SRR060678
Testis		SRR060679
Testis		SRR060680
Testis		SRR060681
Testis		SRR060682
Embryo		SRR060683
Testis		SRR060684
Embryo		SRR060685
Embryo		SRR060686
Embryo		SRR060687
Embryo		SRR060688
Ovary		SRR060689
Testis		SRR1106712
embryo_0-2h		SRR1106713
embryo_0-2h		SRR1106714
embryo_2-4h		SRR1106715
embryo_4-6h		SRR1106716
embryo_4-6h		SRR1106717
embryo_6-8h		SRR1106718
embryo_6-8h		SRR1106719
embryo_8-10h		SRR1106720
embryo_8-10h		SRR1106721
embryo_10-12h		SRR1106722
embryo_10-12h		SRR1106723
embryo_12-14h		SRR1106724
embryo_12-14h		SRR1106725
embryo_14-16h		SRR1106726
embryo_14-16h		SRR1106727
larvae		SRR1106728
larvae		SRR1106729
mixed whole adult body		SRR1106730
embryo_16-30h		V047
Embryo		V053
Head		V116
Male-body		GSM1528803
follicle cells
..AACTAGCAACTCAAGCAACATGGGC...........................................................................................................................................................................................................................................................................................................................................................................................................2512.002200000000000000000000000000000000000000000000000000000000000000
.....TAGCAACTCAAGCAACATGGGCC..........................................................................................................................................................................................................................................................................................................................................................................................................2311.001000100000000000000000000000000000000000000000000000000000000000
...ACTAGCAACTCAAGCAACA................................................................................................................................................................................................................................................................................................................................................................................................................1911.001000000000000000000000000000000000001000000000000000000000000000
......AGCAACTCAAGCAACATGGGCCC.........................................................................................................................................................................................................................................................................................................................................................................................................2311.001000100000000000000000000000000000000000000000000000000000000000
.TAACTAGCAACTCAAGCAACAT...............................................................................................................................................................................................................................................................................................................................................................................................................2211.001000000000000000000000000000000000000000000000000000000000001000
droMoj3
GTAAATACAA-CAAATGAAAATA------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GCAAAT-------------------ATTGGGTAGTCTAAAAAGTCT-TTTCGTATTTGTAATGAAACTTCAAATCATATTTTTAAATATTTATA------------ATAAACT----------------------TTATTAAATCAAATATGCACCATTTTGGTCGACCACCTTTTGCCATTTTTCCACTAGAGASizeHit CountTotal NormTotalM046
Female-body		V041
Embryo		V049
Head		V056
Head		M060
Embryo		V110
Male-body
............................................................................................................................................................................................................................................................................................................................................................................ATTAAATCAAATATGCACCATTTTGG................................26201.05212100000
...........................................................................................................................................................................................................................................................................................................................................................................TATTAAATCAAATATGCACCATTT...................................24200.102000020
......................................................................................................................................................................................................................................................................................................................................................................................................TCGACCACCTTTTGCCATTT............20200.051100000
.................................................................................................................................................................................................................................................................................................................................................ACT----------------------TTATTAAATCAAATATGC..........................................21200.051100000
....................................................................................................................................................................................................................................................................................................................................................................................AAATATGCACCATTTTGG................................18200.051100000
...........................................................................................................................................................................................................................................................................................................................................................................TATTAAATCAAATATGCACCATTTTGGT...............................28200.051100000
..................................................................................................................................................................................................................................................................................TTTCGTATTTGTAATGAAACTTCAAATC........................................................................................................................28200.051100000
............................................................................................................................................................................................................................................................................................................................................................................ATTAAATCAAATATGCACC.......................................19200.051100000
......................................................................................................................................................................................................................................................................................................................................................................................................TCGACCACCTTTTGCCATTTTTC.........23200.051000010
........................................................................................................................................................................................................................................................................AAAAAGTCT-TTTCGTATTTGTAATGAAA.................................................................................................................................28200.051000001
.......................................................................................................................................................................................................................................AT-------------------ATTGGGTAGTCTAAAAAGTC......................................................................................................................................................22200.051100000
...................................................................................................................................................................................................................................................................................TTCGTATTTGTAATGAAACTTCAAAT.........................................................................................................................26200.051100000
droGri2
TTAGCAAGCAACTCAAACAACATGGGCCCGCTGGGCTTGCAAAATGATGGGTCAGTTG---------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------TSizeHit CountTotal NormTotalM041
Female-body		V109
Male-body
No Reads

Generated: 05/17/2015 at 10:09 PM