der_293

##################################################--------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------- GTCCTCAACCGTGGTTCCTTGCTAGGGGCCTAGGATGTTATGGTGGAAAGGTGTATCGTCCGTGAGTCCGTGTTTCTCACTGAAAATTCACTTGTCCCGAGGCACAGCTCCTTGCGTGCTCTCTCGTGTTCTCCCTGACTGCTTGGTTATCCTTTGGCACGTACGGCTCTTCGTGTGTTTAGCTGACTGTCTGCCGATTATCCTCTTGCACATATGACTTCCGCGTGTTTAGCTGACTGTCTGCCCGATTA ************************************************(((.....((.(((((.........))))).)).....))).......(((((((.((.....)))))).))).((((((.....(((((....)))))......))))))..((((.....((..((...))..)).....)))).....************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M055 female body	V060 head	V040 embryo
......................................................................................................................................................................................................................TGACTTCCGCGTGTTTAGCTGACTG............	25	0	3	1.00	3	3	0	0
...............................................................................................................................GTTCTCCCTGTCTGCCTGGGTA......................................................................................................	22	3	4	0.25	1	0	0	1
.........................................................................................................................................................................................................................CTTCCGCGTGTTTAGGTGGCTGT...........	23	2	4	0.25	1	0	1	0
.....................................................................................................................................................................................................................ATGACTTCCGCGTGTTTAGCTGA...............	23	0	4	0.25	1	1	0	0
....................................................................CGGGTTTCTCACTGAAAAGTCACTTG.............................................................................................................................................................	26	2	4	0.25	1	1	0	0
......................................TATGGTGGAAAGGTGTATCGTCCGT............................................................................................................................................................................................	25	0	5	0.20	1	1	0	0
.........................................................................................................................................................................................................................CTTCAGCGTGTTTAGGTGTCT.............	21	3	6	0.17	1	0	1	0
.........................................................................TTCTCACTGAAAATTCACTTGTCCCG........................................................................................................................................................	26	0	14	0.14	2	2	0	0

CAGGAGTTGGCACCAAGGAACGATCCCCGGATCCTACAATACCACCTTTCCACATAGCAGGCACTCAGGCACAAAGAGTGACTTTTAAGTGAACAGGGCTCCGTGTCGAGGAACGCACGAGAGAGCACAAGAGGGACTGACGAACCAATAGGAAACCGTGCATGCCGAGAAGCACACAAATCGACTGACAGACGGCTAATAGGAGAACGTGTATACTGAAGGCGCACAAATCGACTGACAGACGGGCTAAT ************************************************(((.....((.(((((.........))))).)).....))).......(((((((.((.....)))))).))).((((((.....(((((....)))))......))))))..((((.....((..((...))..)).....)))).....************************************************	Read size	# Mismatch	Hit Count	Total Norm	Total	M055 female body	V040 embryo	V108 head	V107 male body
.................................................................................................................................................................ATGCCGAGAAGCACACAAATCGAC..................................................................	24	0	3	0.33	1	1	0	0	0
....................................................................................................................TGGAGACAGCACAAGAGGGACT.................................................................................................................	22	3	6	0.17	1	1	0	0	0
.................................................................................................................CGAATGAGAGAGCTCAAGAG......................................................................................................................	20	3	8	0.13	1	0	0	1	0
............CCAAGGAACGGTCACCGGA............................................................................................................................................................................................................................	19	2	8	0.13	1	0	1	0	0
..........................................................................................................................................................................................................GAGAACGTGGATACATAAG..............................	19	3	20	0.05	1	0	0	0	1
................................................................................................................................................................................................CGGCAACTAGGGGAACGTG........................................	19	3	20	0.05	1	0	0	0	1

Species	Coordinate	ID	Alignment
droEre2	scaffold_4218:1663-1913 +	der_293	GTCCTCAAC--------CGTGGTTCCTTGCTAGGGGCCTAGGATGTTATGGTGGAAAGGTGTATCGTCCGTGAGTCCG-----TG---TTTCTCACTGAAAATTCACTTGTCCCGAGGCACAGCTCCTTGCGTGCTCTCTCGTGTTCTCCC--------TGACTGCTTGGTTATCCTTTGGCACGTACGGCT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTCGTGTGTTTAGCTGACTGTCTGC----------------CGATTATCCTCTTGCACATATGACT-TCCGCGTGTTTAGCTGACTGTCTGCCCG-ATTA
droYak3	v2_chr2h_random_026:195055-195318 +		ATTCCCGACAGAGTACCCGTGCCTGCTCGAATGGGGCTTACAATGTTATGGGGGCAAGGTGTATCGTCCGCGAGTCAACCCAACGCTCTTTCC---CG---AACCACCTGTGCCGACCAATGACTCCA-CCGTCCCTTCT-GAGCACGCCAGGACCTTGTGAGC----GCTTGTCCTT---CACTTGCTGCTTTC--------------------------------------------------------------------------------------------------------------CTCATGGGTGTTCTTGCTCACTG--------------------------------------------------------TTCACCTATCGTTCACTTATCC-------------CGGGTGTAGCTTTCCGCGTATTCT---CACTTACTGCC--GGG-T
droSec2	scaffold_117:61987-62209 +		GACCGTC--------------------------------------------------------------------------------------------------------------------------------------------------------C----------------------------TTCCGTGTCCTTCGGGCTTCTTGCCGCCCGATGCTTCCACTGTTTCTTTCCTTCTGACTTGACAGCGCGTTCTCACTCCCGAACTCCTTCCGTTAACACTCCGACGCACTATCTTCTTCCACGCGCGATCTTCCTGTCTC--------------------------------------------------------ACTAACTGTCTCCTACTTATCCGACTGTCCTCGCGTACGTACGGCTCTTCGCGTGTTGA---GACTGACTCCCC-GAG-C
droSim2	node_72150:2192-2443 -		GATCGTC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTCGGGCTTCTTGCCGCCCGATGCTTGCACTGCTCCTTTCCTTCTGACTTGACCGCGCGTCCACACTTCCGAGATCCTTCCGTTAACACTCAGACGCTCGGCCTTCTTCCGTACGCGATCTCGCTGTCTCCTCCGCCTTCAGACCCCGTTCCGACTGCGCGCTGACCGCGCGACTTGCGCCGATACTCT--------CCT-------CGACTATCCTCGCGTACGTA---CTCCTCGCGTGTTGA---GACTGACTGCCTCGAG-C
dm3	chr2R:182292-182563 +		ACCCTCT-------------GCCGGCCGGAA-CGGGTTTAGAATGTTATGGTG-CAGGGTGTATCGTCCACGGGC-GAGGCAACGCTCGGCCT---GG---AACCACCTTTGCTGGCCACTGACTCCA-CTGACCCTTC-------------------------------------TC---TACTCGCTTCTGTGTCCTTCGGGCTTCTTGCCGCCCGACGCTTCCACTGTTTGT-TGTTTCCGACTTGACCGCGCGTTCTCAGTCCCGAACTCCTTCTGGTAACGCTCCGACGCACTATCTCCTTCCACGCGCGATCTTGCTGTCT-----------------------------------------------------------------------------------------------------------------------AACTGACTG---------
droTak1	scf7180000412724:1265-1296 +		TCCGT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGTCCGTCTGTCTGTCTGTCTG-TCTG
droAna3	scaffold_13111:928751-928821 +		TTCTGTC--------------------------------------------------------------------------------------------------------------------------------------------------------CGTCTGTCTGTCTGTCCGTCTGTCCGTCTGTCC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTCTGTCTGTCTGTCCGTC-------------------------------------------------------------------TGTCTGTC--GGT-T

Re-alignment of all predicted orthologs with sRNA reads

Species

Read alignment

droEre2

GTCCTCAAC--------CGTGGTTCCTTGCTAGGGGCCTAGGATGTTATGGTGGAAAGGTGTATCGTCCGTGAGTCCG-----TG---TTTCTCACTGAAAATTCACTTGTCCCGAGGCACAGCTCCTTGCGTGCTCTCTCGTGTTCTCCC--------TGACTGCTTGGTTATCCTTTGGCACGTACGGCT---------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTCGTGTGTTTAGCTGACTGTCTGC----------------CGATTATCCTCTTGCACATATGACT-TCCGCGTGTTTAGCTGACTGTCTGCCCG-ATTA	Size	Hit Count	Total Norm	Total	M055 Female-body	M057 Embryo	V060 Head	V040 Embryo	V107 Male-body	V108 Head	GSM1528801 follicle cells
.........................................................................................................................................................................................................................................................................................................................................................................................................................................TGACT-TCCGCGTGTTTAGCTGACTG.............	25	3	1.00	3	3	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................ATGACT-TCCGCGTGTTTAGCTGA................	23	4	0.25	1	1	0	0	0	0	0	0
..............................................TATGGTGGAAAGGTGTATCGTCCGT.........................................................................................................................................................................................................................................................................................................................................................................................................	25	5	0.20	1	1	0	0	0	0	0	0
.........................................................................................TTCTCACTGAAAATTCACTTGTCCCG.............................................................................................................................................................................................................................................................................................................................................................	26	14	0.14	2	2	0	0	0	0	0	0

droYak3

ATTCCCGACAGAGTACCCGTGCCTGCTCGAATGGGGCTTACAATGTTATGGGGGCAAGGTGTATCGTCCGCGAGTCAACCCAACGCTCTTTCC---CG---AACCACCTGTGCCGACCAATGACTCCA-CCGTCCCTTCT-GAGCACGCCAGGACCTTGTGAGC----GCTTGTCCTT---CACTTGCTGCTTTC--------------------------------------------------------------------------------------------------------------CTCATGGGTGTTCTTGCTCACTG--------------------------------------------------------TTCACCTATCGTTCACTTATCC-------------CGGGTGTAGCTTTCCGCGTATTCT---CACTTACTGCC--GGG-T	Size	Hit Count	Total Norm	Total	M026 Head	M043 Female-body	M056 Embryo	V046 Embryo	V052 Head	V058 Head	V120 Male-body	SRR1275488 Male larvae	SRR1275486 Male prepupae	SRR1275484 Male prepupae	GSM1528802 follicle cells
........................................................................................................................TGACTCCA-CCGTCCCT.......................................................................................................................................................................................................................................................................................................................................	16	20	0.25	5	0	0	0	0	0	0	0	0	0	0	5
...............................................................................................................GCCGACCAATGACTCCA-CCGTCC.........................................................................................................................................................................................................................................................................................................................................	23	5	0.20	1	0	1	0	0	0	0	0	0	0	0	0

droSec2

GACCGTC--------------------------------------------------------------------------------------------------------------------------------------------------------C----------------------------TTCCGTGTCCTTCGGGCTTCTTGCCGCCCGATGCTTCCACTGTTTCTTTCCTTCTGACTTGACAGCGCGTTCTCACTCCCGAACTCCTTCCGTTAACACTCCGACGCACTATCTTCTTCCACGCGCGATCTTCCTGTCTC--------------------------------------------------------ACTAACTGTCTCCTACTTATCCGACTGTCCTCGCGTACGTACGGCTCTTCGCGTGTTGA---GACTGACTCCCC-GAG-C	Size	Hit Count	Total Norm	Total	M054 Female-body	V113 Male-body	V114 Embryo	V115 Head
...............................................................................................................................................................................................................................................TTCTGACTTGACAGCGCGTTCTCACTC......................................................................................................................................................................................................	27	1	1.00	1	1	0	0	0
.......................................................................................................................................................................................................................................TTCTTTCCTTCTGACTTGACAGCGC................................................................................................................................................................................................................	25	1	1.00	1	1	0	0	0
...........................................................................................................................................................................................................................................................................................................TCTTCTTCCACGCGCGATCTTTAC.............................................................................................................................................	24	1	1.00	1	1	0	0	0
...........................................................................................................................................................................................................................TGCTTCCACTGTTTCTTTCCTTCTGACT.........................................................................................................................................................................................................................	28	1	1.00	1	1	0	0	0
....GTC--------------------------------------------------------------------------------------------------------------------------------------------------------C----------------------------TTCCGTGTCCTTCGGGCTTCTTGC............................................................................................................................................................................................................................................................	28	2	0.50	1	1	0	0	0
............................................................................................................................................................................................TTCCGTGTCCTTCGGGCTTCTTGCCGCC........................................................................................................................................................................................................................................................	28	4	0.25	1	1	0	0	0
................................................................................................................................................................................................................................................................................TCCTTCCGTTAACACTCCGACGC.........................................................................................................................................................................	23	15	0.13	2	2	0	0	0
..........................................................................................................................................................................................................................................TTTCCTTCTGACTTGACAGCGCGTTCA...........................................................................................................................................................................................................	27	8	0.13	1	1	0	0	0

droSim2

GATCGTC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTCGGGCTTCTTGCCGCCCGATGCTTGCACTGCTCCTTTCCTTCTGACTTGACCGCGCGTCCACACTTCCGAGATCCTTCCGTTAACACTCAGACGCTCGGCCTTCTTCCGTACGCGATCTCGCTGTCTCCTCCGCCTTCAGACCCCGTTCCGACTGCGCGCTGACCGCGCGACTTGCGCCGATACTCT--------CCT-------CGACTATCCTCGCGTACGTA---CTCCTCGCGTGTTGA---GACTGACTGCCTCGAG-C	Size	Hit Count	Total Norm	Total	M023 Head	M024 Male-body	M025 Embryo	M053 Female-body	O001 Testis	O002 Head	SRR553485 Ovary	SRR553486 Ovary	SRR553487 Ovary	SRR553488 Ovary	SRR618934 Ovary	V044 Embryo	SRR902008 Ovary	SRR902009 Testis	SRR1275487 Male larvae	SRR1275485 Male prepupae	SRR1275483 Male prepupae
.............................................................................................................................................................................................................................................................................................................................................................................................TACTCT--------CCT-------CGACTATCCTCGCGT............................................	24	20	73.90	1478	0	0	17	32	0	0	448	0	515	102	364	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................TTCAGACCCCGTTCCGACTGCGCGC........................................................................................................	25	13	50.92	662	0	0	53	74	0	0	127	17	112	21	160	12	84	2	0	0	0
................................................................................................................................................................................................................................GCACTGCTCCTTTCCTTCTGACTTG.......................................................................................................................................................................................................................	25	4	27.25	109	0	0	0	0	0	0	18	37	33	21	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................TACTCT--------CCT-------CGACTATCCTCGCGTA...........................................	25	20	27.15	543	0	0	1	25	0	0	143	0	166	70	100	1	37	0	0	0	0
.........................................................................................................................................................................................................................................................................................TAACACTCAGACGCTCGGCCTTCT...............................................................................................................................................................	24	1	19.00	19	0	0	0	1	0	0	7	5	5	1	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................TAACACTCAGACGCTCGGCCTT.................................................................................................................................................................	22	1	16.00	16	0	0	3	0	0	0	5	5	1	0	1	1	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................TCAGACCCCGTTCCGACTGCGCGCT.......................................................................................................	25	13	13.92	181	0	0	2	0	0	0	82	6	86	4	0	0	1	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................TTCAGACCCCGTTCCGACTGCGCGCT.......................................................................................................	26	13	11.31	147	0	0	7	1	0	0	73	18	31	4	6	0	7	0	0	0	0
.........................................................................................................................................................................................................................................................................................TAACACTCAGACGCTCGGCCTTCTT..............................................................................................................................................................	25	1	11.00	11	0	0	0	0	0	0	3	2	3	2	1	0	0	0	0	0	0
............................................................................................................................................................................................................................GCTTGCACTGCTCCTTTCCTTCTGACT.........................................................................................................................................................................................................................	27	4	10.75	43	0	0	0	14	0	0	8	0	20	0	1	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................TACTCT--------CCT-------CGACTATCCTC................................................	20	20	10.60	212	0	0	0	0	207	0	0	0	0	0	5	0	0	0	0	0	0
................................................................................................................................................................................................................................GCACTGCTCCTTTCCTTCTGACTTGAC.....................................................................................................................................................................................................................	27	4	10.00	40	0	0	0	0	0	0	2	15	10	13	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................CAGACCCCGTTCCGACTGCGCGCT.......................................................................................................	24	15	8.87	133	0	0	2	0	0	0	54	14	41	6	3	0	13	0	0	0	0
......................................................................................................................................................................................................................................................TTGACCGCGCGTCCACACTTCCGAGA................................................................................................................................................................................................	26	1	8.00	8	0	0	0	0	0	0	3	0	5	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................TAACACTCAGACGCTCGGCCTTC................................................................................................................................................................	23	1	8.00	8	0	0	4	1	0	0	1	0	0	0	2	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................CCCCGTTCCGACTGCGCGCTGACCGC.................................................................................................	26	20	7.25	145	0	0	25	0	0	0	69	32	14	5	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................TCAGACCCCGTTCCGACTGCGCGC........................................................................................................	24	13	6.77	88	0	0	2	5	0	0	26	1	46	1	3	0	4	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................TTCAGACCCCGTTCCGACTGCGCGCA.......................................................................................................	26	13	5.85	76	0	0	0	1	0	0	0	0	0	0	0	0	74	1	0	0	0
................................................................................................................................................................................................................................GCACTGCTCCTTTCCTTCTGACTTGA......................................................................................................................................................................................................................	26	4	5.25	21	0	0	0	0	0	0	4	11	1	5	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................TCCTTTCCTTCTGACTTGACCGCGCGT..............................................................................................................................................................................................................	27	6	5.17	31	0	0	0	0	0	0	5	1	4	1	0	0	20	0	0	0	0
....................................................................................................................................................................................................................................................................................TCCGTTAACACTCAGACGCTCGGCCT..................................................................................................................................................................	26	1	5.00	5	0	0	1	0	0	0	3	0	0	1	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................TACTCT--------CCT-------CGACTATCCTCGCG.............................................	23	20	4.95	99	0	0	13	14	21	21	0	6	21	0	0	0	2	1	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................TACTCT--------CCT-------CGACTATCC..................................................	18	20	4.90	98	0	0	0	0	96	0	0	0	0	0	2	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................A---GACTGACTGCCTCGAG-C	18	8	4.88	39	0	0	0	0	9	9	0	0	0	0	21	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................TA---CTCCTCGCGTGTTGA---GACTGACTGC........	27	20	4.70	94	0	0	0	0	0	0	15	18	26	22	10	0	3	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGCGTGTTGA---GACTGACTGCCTCGAG-C	28	6	4.33	26	0	0	0	0	0	0	8	5	9	3	1	0	0	0	0	0	0
.......................................................................................................................................................................................................................................TCCTTTCCTTCTGACTTGACCGCGCG...............................................................................................................................................................................................................	26	6	4.33	26	0	0	0	1	0	0	1	1	1	1	0	0	21	0	0	0	0
.......................................................................................................................................................................................................................................TCCTTTCCTTCTGACTTGACCGCGC................................................................................................................................................................................................................	25	6	4.33	26	0	0	0	0	0	0	2	2	2	0	0	0	20	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCGTGTTGA---GACTGACTGCCTCGAG-C	27	6	4.17	25	0	0	0	0	0	0	2	3	10	2	8	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTCGCGTGTTGA---GACTGACTGCCT......	26	10	4.10	41	0	0	16	0	0	0	6	7	7	4	0	0	1	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................CGCGATCTCGCTGTCTCCTCCGCCT................................................................................................................................	25	1	4.00	4	0	0	3	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................TACTCT--------CCT-------CGACTATCCTCGCGTACG.........................................	27	20	3.95	79	0	0	2	30	0	0	0	9	7	4	25	1	1	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................AGACCCCGTTCCGACTGCGCGCT.......................................................................................................	23	20	3.60	72	0	0	0	1	0	0	19	4	34	8	2	0	3	1	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTCGCGTGTTGA---GACTGACTGCCTC.....	27	10	3.40	34	0	0	0	0	0	0	13	7	5	5	2	0	2	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................CCCCGTTCCGACTGCGCGCTGACCGCGC...............................................................................................	28	15	3.27	49	0	0	1	0	0	0	29	11	6	2	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................TACTCT--------CCT-------CGACTATCCTCGC..............................................	22	20	3.25	65	0	0	0	0	44	0	0	0	3	3	15	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................TACTCT--------CCT-------CGACTATCCTCGCGTAC..........................................	26	20	3.20	64	0	0	0	9	0	0	8	9	4	4	18	0	12	0	0	0	0
.......................................................................................................................................................................................................................................TCCTTTCCTTCTGACTTGACCGCG.................................................................................................................................................................................................................	24	6	3.17	19	0	0	0	0	0	0	0	0	0	0	0	0	19	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................TGCGCGCTGACCGCGCGACTTGCGCCGA...................................................................................	28	1	3.00	3	0	0	0	0	0	0	2	0	0	1	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................TA---CTCCTCGCGTGTTGA---GACTGAC...........	24	20	2.75	55	0	0	0	1	0	34	2	0	3	8	7	0	0	0	0	0	0
................................................................................................................................................................................................................................GCACTGCTCCTTTCCTTCTGACTT........................................................................................................................................................................................................................	24	4	2.50	10	0	0	0	0	0	0	0	4	4	2	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................TTCAGACCCCGTTCCGACTGCGCG.........................................................................................................	24	14	2.36	33	0	0	4	1	0	0	8	1	3	1	5	0	10	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................CTCGCGTGTTGA---GACTGACTGCCTCGAG-C	29	6	2.33	14	0	0	0	0	0	0	5	3	5	1	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTCGCGTGTTGA---GACTGACTGC........	24	20	2.15	43	0	0	0	2	0	0	0	9	15	8	4	0	5	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................TCCGACTGCGCGCTGACCGCGCGACT...........................................................................................	26	9	2.11	19	0	0	0	0	0	0	12	6	0	0	1	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................TAACACTCAGACGCTCGGCCT..................................................................................................................................................................	21	1	2.00	2	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................A---GACTGACTGCCTCG....	15	9	2.00	18	0	0	0	0	0	0	0	1	0	0	17	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................TGACCGCGCGTCCACACTTCCGAGA................................................................................................................................................................................................	25	1	2.00	2	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................TCCTTTCCTTCTGACTTGACCGC..................................................................................................................................................................................................................	23	6	2.00	12	0	0	0	0	0	0	0	0	0	0	0	0	10	2	0	0	0
.........................................................................................................................................................................................................................................................................TCCGAGATCCTTCCGTTAACACTCAG.............................................................................................................................................................................	26	1	2.00	2	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................TTTCCTTCTGACTTGACCGCGCGT..............................................................................................................................................................................................................	24	8	2.00	16	0	0	0	0	0	0	6	2	4	1	2	0	1	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................CCCCGTTCCGACTGCGCGCTGACCGCG................................................................................................	27	18	1.94	35	0	0	3	1	0	0	17	11	3	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................TCCGCCTTCAGACCCCGTTCCGACTG.............................................................................................................	26	16	1.94	31	0	0	28	0	0	0	0	0	1	0	0	0	2	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGCGTGTTGA---GACTGACTGCCTCGA...	26	7	1.86	13	0	0	0	0	0	0	0	5	3	2	3	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................CTCT--------CCT-------CGACTATCCTCGCGTAC..........................................	24	20	1.80	36	0	0	0	0	36	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................CAGACCCCGTTCCGACTGCGCGCTGA.....................................................................................................	26	15	1.80	27	0	0	0	1	0	0	2	0	4	0	2	0	17	1	0	0	0
............................................................................................................................................................................................................................GCTTGCACTGCTCCTTTCCTTCTGAC..........................................................................................................................................................................................................................	26	9	1.78	16	0	0	3	5	0	0	5	0	3	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................TTCAGACCCCGTTCCGACTGCGCGCAA......................................................................................................	27	13	1.69	22	0	0	0	0	0	0	0	0	0	0	0	0	22	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................CCCGTTCCGACTGCGCGCTGACCGCGC...............................................................................................	27	16	1.69	27	0	0	0	0	0	0	16	4	5	2	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................A---GACTGACTGCCTCGA...	16	9	1.67	15	0	0	0	0	0	0	0	0	0	0	15	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTCGCGTGTTGA---GACTGACTGCC.......	25	20	1.65	33	0	0	10	3	0	0	0	10	0	7	0	0	3	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................TTCAGACCCCGTTCCGACT..............................................................................................................	19	16	1.63	26	0	0	0	0	0	0	0	0	0	0	26	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................AGACCCCGTTCCGACTGCGCGC........................................................................................................	22	20	1.60	32	0	0	1	1	0	0	2	3	6	2	14	0	3	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................CCCCGTTCCGACTGCGCGCTGACCG..................................................................................................	25	20	1.60	32	0	0	6	1	0	0	9	4	6	3	3	0	0	0	0	0	0
................................................................................................................................................................................................................................GCACTGCTCCTTTCCTTCTGACTTGACA....................................................................................................................................................................................................................	28	4	1.50	6	0	0	0	0	0	0	1	4	0	1	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGCGTGTTGA---GACTGACTGCCTC.....	24	10	1.40	14	0	0	0	1	0	0	1	0	5	0	7	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................TTCAGACCCCGTTCCGACTGCGC..........................................................................................................	23	15	1.33	20	0	0	3	1	0	0	3	0	2	1	3	1	6	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................CAGACCCCGTTCCGACTGCGCGCTGAC....................................................................................................	27	15	1.33	20	0	0	2	5	0	0	7	1	1	2	1	0	1	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................CAGACCCCGTTCCGACTGCGCGCTG......................................................................................................	25	15	1.27	19	0	0	0	1	0	0	1	1	2	0	1	0	13	0	0	0	0
.................................................................................................................................................................................................................................CACTGCTCCTTTCCTTCTGACTTGAC.....................................................................................................................................................................................................................	26	4	1.25	5	0	0	0	0	0	0	0	2	0	2	0	0	1	0	0	0	0
................................................................................................................................................................................................................................GCACTGCTCCTTTCCTTCTGACT.........................................................................................................................................................................................................................	23	4	1.25	5	0	0	0	0	0	0	0	2	0	2	1	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................TACTCT--------CCT-------CGACTATCCT.................................................	19	20	1.20	24	0	0	0	0	0	23	0	0	0	0	1	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................TACTCT--------CCT-------CGACTATCCTCGCGTACGT........................................	28	20	1.15	23	0	0	0	4	0	0	6	2	3	0	8	0	0	0	0	0	0
...........................................................................................................................................................................................................................................TTCCTTCTGACTTGACCGCGCGT..............................................................................................................................................................................................................	23	8	1.13	9	0	0	0	0	0	0	2	4	0	0	2	0	1	0	0	0	0
.............................................................................................................................................................................................................................................................................................................TTCTTCCGTACGCGATCTCGCTG............................................................................................................................................	23	11	1.09	12	0	0	5	0	0	0	2	0	4	0	1	0	0	0	0	0	0
............................................................................................................................................................................................................................GCTTGCACTGCTCCTTTCCT................................................................................................................................................................................................................................	20	14	1.07	15	0	0	0	0	14	0	0	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................CAGACCCCGTTCCGACTGCGCGC........................................................................................................	23	15	1.07	16	0	2	1	0	0	0	3	1	6	0	1	0	2	0	0	0	0
.........................................................................................................................................................................................................................................................................................TAACACTCAGACGCTCGGCC...................................................................................................................................................................	20	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................TA---CTCCTCGCGTGTTGA---GACTGACTG.........	26	20	1.00	20	0	0	0	0	0	0	3	4	10	0	2	0	1	0	0	0	0
.........................................................................................................................................................................................................................................................................................TAACACTCAGACGCTCGGCCTTCTA..............................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................AACACTCAGACGCTCGGCCTTCTTC.............................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................TCCACACTTCCGAGATCCTTCCGT.......................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................TCCACACTTCCGAGATCCTTCCGTT......................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................CACTGCTCCTTTCCTTCTGACTTGA......................................................................................................................................................................................................................	25	4	1.00	4	0	0	0	0	0	0	0	1	1	2	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................TCCGAGATCCTTCCGTTAACACTCAGA............................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................TAACACTCAGACGCTCGGCCTTCTTC.............................................................................................................................................................	26	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................TGCCGCCCGATGCTTGCAC............................................................................................................................................................................................................................................	19	20	1.00	20	0	0	0	0	20	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGCGTGTTGA---GACTGACTGCCTCGAG-.	27	7	1.00	7	0	0	0	0	0	0	1	2	3	1	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................GACCGCGCGTCCACACTTCCGAGATCC.............................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................TCTCGCTGTCTCCTCCGCCTTCAGAA..........................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................TGACCGCGCGACTTGCGCCGATAC................................................................................	24	1	1.00	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................TCCGTTAACACTCAGACGCTCGG.....................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................TTCCGTTAACACTCAGACGCTCGGC....................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................TCGCTGTCTCCTCCGCCTTCAGACCCCGT.....................................................................................................................	29	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTGACTGCCTCGAG-C	17	11	1.00	11	0	0	0	0	0	0	1	0	0	0	10	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................TTCCGTTAACACTCAGACGCTCGGCCT..................................................................................................................................................................	27	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................CGCGATCTCGCTGTCTCCTCCGCCG................................................................................................................................	25	1	1.00	1	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................TTAACACTCAGACGCTCGGCCTT.................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................TCCTTTCCTTCTGACTTGACCGCGCGTC.............................................................................................................................................................................................................	28	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
...............................................................................................................................................................................................................................................................CGTCCACACTTCCGAGATCCTTCCGT.......................................................................................................................................................................................	26	1	1.00	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................TGACCGCGCGACTTGCGCCGATACT...............................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
........................................................................................................................................................................................................................................CCTTTCCTTCTGACTTGACCGCGCGT..............................................................................................................................................................................................................	26	6	1.00	6	0	0	0	0	0	0	1	3	0	0	0	0	1	1	0	0	0
....................................................................................................................................................................................................................................................................................TCCGTTAACACTCAGACGCTCGGC....................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................GCTTGCACTGCTCCTTTCCTTCTGACTT........................................................................................................................................................................................................................	28	4	1.00	4	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................TGACCGCGCGACTTGCGCCG....................................................................................	20	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................CGTTAACACTCAGACGCTCGGCCTT.................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................CGCGCGTCCACACTTCCGAGATCCTTCCGTT......................................................................................................................................................................................	31	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................CTTGACCGCGCGTCCACACTTCCGA..................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................TTCCTTCTGACTTGACCGCGCGTC.............................................................................................................................................................................................................	24	1	1.00	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................TCCGTTAACACTCAGACGCTCGGCCTT.................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................TCAGACGCTCGGCCTTCTTCCGTACGCGA....................................................................................................................................................	29	1	1.00	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................TTTCCTTCTGACTTGACCGCGCGTCCA...........................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................TTCCTTCTGACTTGACCGCGCGTCCAC..........................................................................................................................................................................................................	27	1	1.00	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................CCCGTTCCGACTGCGCGCTGACCGCGCGA.............................................................................................	29	10	0.90	9	0	0	1	0	0	0	3	3	0	2	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................................................................................................................A---GACTGACTGCCTCGAG-.	17	9	0.89	8	0	0	0	0	0	0	0	0	0	1	7	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................TCCGAGATCCTTCCGTT......................................................................................................................................................................................	17	9	0.89	8	0	0	0	0	0	0	0	0	0	0	8	0	0	0	0	0	0
..........................................................................................................................................................................................................................................TTTCCTTCTGACTTGACCGCGCG...............................................................................................................................................................................................................	23	8	0.88	7	0	0	0	0	0	0	1	3	0	1	0	0	1	1	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................TGA---GACTGACTGCCTCGAG-C	20	8	0.88	7	0	0	2	1	0	0	0	1	2	0	0	0	1	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................................CGTGTTGA---GACTGACTGCCTCGAG-C	25	8	0.88	7	0	0	0	1	0	0	0	1	1	2	2	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................A---CTCCTCGCGTGTTGA---GACTGACTGC........	26	20	0.85	17	0	0	0	0	0	0	2	2	2	1	9	0	1	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................TCCTCCGCCTTCAGACCCCGTTCCGA................................................................................................................	26	19	0.79	15	0	0	0	0	0	0	5	1	1	3	0	0	5	0	0	0	0
..........................................................................................................................................................................................................................................................................................................................................................TTCCGACTGCGCGCTGACCGCGCGACT...........................................................................................	27	9	0.78	7	0	0	2	0	0	0	4	0	0	1	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................TA---CTCCTCGCGTGTTGA---GACTGACTGCCT......	29	9	0.78	7	0	0	3	1	0	0	3	0	0	0	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................TCCGAGATCCTTCCGTTAA....................................................................................................................................................................................	19	9	0.78	7	0	0	0	0	7	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................TTCAGACCCCGTTCCGACTGCGCGCTG......................................................................................................	27	13	0.77	10	0	0	0	2	0	0	1	0	0	0	2	0	5	0	0	0	0
...............................................................................................................................................................................................................................TGCACTGCTCCTTTCCTTCTGACTT........................................................................................................................................................................................................................	25	4	0.75	3	0	0	0	1	0	0	0	0	1	0	0	1	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................TCAGACCCCGTTCCGACTGCGCG.........................................................................................................	23	14	0.71	10	0	0	0	0	0	0	2	0	5	0	0	0	3	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................TCCGACTGCGCGCTGACCGC.................................................................................................	20	20	0.70	14	0	0	2	0	0	0	3	2	6	1	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................CCCGTTCCGACTGCGCGCTGACCGC.................................................................................................	25	20	0.70	14	0	0	1	0	0	0	4	3	4	0	0	0	2	0	0	0	0
.......................................................................................................................................................................................................................................TCCTTTCCTTCTGACTTGACCGCGT................................................................................................................................................................................................................	25	6	0.67	4	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................TACTCT--------CCT-------CGACTATCCTCGCGTT...........................................	25	20	0.65	13	0	0	0	1	0	0	3	2	3	1	2	0	1	0	0	0	0
.............................................................................................................................................................................................................................................................................................................TTCTTCCGTACGCGATCTCGCTGTC..........................................................................................................................................	25	11	0.64	7	0	0	1	1	0	0	3	0	1	0	1	0	0	0	0	0	0
...........................................................................................................................................................................................................................................TTCCTTCTGACTTGACCGC..................................................................................................................................................................................................................	19	8	0.63	5	0	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................TCAGACCCCGTTCCGACTGCGCGCTGA.....................................................................................................	27	13	0.62	8	0	0	0	1	0	0	0	0	2	3	0	0	2	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................CTCGCGTGTTGA---GACTGACTGCCTCGA...	27	7	0.57	4	0	0	0	0	0	0	1	1	1	1	0	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................TCCGAGATCCTTCCGTTAACACTC...............................................................................................................................................................................	24	9	0.56	5	0	0	0	0	0	0	0	0	3	0	2	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................TCCGAGATCCTTCCGT.......................................................................................................................................................................................	16	9	0.56	5	0	0	0	0	0	0	1	2	0	0	2	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................T-------CGACTATCCTCGCGTACGTA---CTC.................................	24	20	0.55	11	0	0	0	0	0	0	0	0	1	1	3	0	5	1	0	0	0
..................................................................................................................................................................................................................................................................................................................................................AGACCCCGTTCCGACTGCGCG.........................................................................................................	21	20	0.55	11	0	0	0	0	0	0	1	2	2	0	6	0	0	0	0	0	0
.................................................................................................................................................................................................................TGCCGCCCGATGCTTGCACTGCTCC......................................................................................................................................................................................................................................	25	20	0.55	11	0	0	0	1	0	0	3	0	5	0	0	0	1	1	0	0	0
...............................................................................................................................................................................................................................................................................................................................................TTCAGACCCCGTTCCGACTGCGCGCTGA.....................................................................................................	28	13	0.54	7	0	0	0	1	0	0	1	0	0	0	0	0	4	1	0	0	0
................................................................................................................................................................................................................................................................................................................................................TCAGACCCCGTTCCGACTGCGC..........................................................................................................	22	15	0.53	8	0	0	0	0	0	0	2	0	6	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................CACTGCTCCTTTCCTTCTGACTTG.......................................................................................................................................................................................................................	24	4	0.50	2	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................TGCTTGCACTGCTCCTTTCCTTCTGACT.........................................................................................................................................................................................................................	28	4	0.50	2	0	0	1	0	0	0	0	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................CACTGCTCCTTTCCTTCTGACTTGACCG...................................................................................................................................................................................................................	28	4	0.50	2	0	0	0	0	0	0	0	1	0	1	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................T-------CGACTATCCTCGCGTACGTA---CTCCT...............................	26	20	0.50	10	0	0	2	0	0	0	2	1	0	0	4	0	1	0	0	0	0
.................................................................................................................................................................................................................TGCCGCCCGATGCTTGCACTGCTCCT.....................................................................................................................................................................................................................................	26	20	0.50	10	0	0	1	0	0	0	2	1	5	0	0	0	1	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................TA---CTCCTCGCGTGTTGA---GACTGACTGCC.......	28	20	0.50	10	0	0	0	1	0	0	0	5	2	2	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................................TTGA---GACTGACTGCCTCGAG-C	21	8	0.50	4	0	0	3	0	0	0	1	0	0	0	0	0	0	0	0	0	0
.ATCGTC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTCGGGCTTCTTGCCGCCC.......................................................................................................................................................................................................................................................	26	2	0.50	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................CACACTTCCGAGATCCTTCCGT.......................................................................................................................................................................................	22	8	0.50	4	0	0	0	0	0	0	0	1	1	0	2	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTCGCGTGTTGA---GACTGACTG.........	23	20	0.50	10	0	0	0	0	0	0	2	0	4	2	2	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................CTCGCGTGTTGA---GACTGACTGCCTC.....	25	10	0.50	5	0	0	0	0	0	0	1	0	1	1	2	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................TCGGCCTTCTTCCGTACGCGATCTCGC..............................................................................................................................................	27	4	0.50	2	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................AGACCCCGTTCCGACTGCGCGCTG......................................................................................................	24	20	0.50	10	0	0	0	2	0	0	1	0	1	0	2	0	4	0	0	0	0
GATCGTC----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------CTTCGGGCTTCTTGCCGCC........................................................................................................................................................................................................................................................	26	2	0.50	1	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0
..............................................................................................................................................................................................................................TTGCACTGCTCCTTTCCTTCTGACT.........................................................................................................................................................................................................................	25	4	0.50	2	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................ATACTCT--------CCT-------CGACTATCCTCGCGT............................................	25	2	0.50	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................GCTTGCACTGCTCCTTTCC.................................................................................................................................................................................................................................	19	14	0.50	7	0	0	0	0	7	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................TTCAGACCCCGTTCCGACTGC............................................................................................................	21	15	0.47	7	0	0	3	0	0	0	0	0	0	0	3	0	1	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................CTTCAGACCCCGTTCCGACTGCGCGC........................................................................................................	26	13	0.46	6	0	0	1	1	0	0	1	1	2	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................CGTA---CTCCTCGCGTGTTGA---GACTGAC...........	26	20	0.45	9	0	0	0	0	0	0	0	0	1	1	4	0	3	0	0	0	0
.........................................................................................................................................................................................................................................................................TCCGAGATCCTTCCGTTAACACT................................................................................................................................................................................	23	9	0.44	4	0	0	0	0	0	0	1	0	2	0	1	0	0	0	0	0	0
............................................................................................................................................................................................................................GCTTGCACTGCTCCTTTCCTTCTGA...........................................................................................................................................................................................................................	25	9	0.44	4	0	0	0	2	0	0	1	0	0	0	0	0	1	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................CTCCTCGCGTGTTGA---GACTGACTGCCT......	27	9	0.44	4	0	0	2	0	0	0	1	1	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................TTCCGAGATCCTTCCGTT......................................................................................................................................................................................	18	9	0.44	4	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................CCCCGTTCCGACTGCGCGCTGACCGCGCGA.............................................................................................	30	9	0.44	4	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................TTCCGAGATCCTTCCGTTAACACTC...............................................................................................................................................................................	25	9	0.44	4	0	0	3	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................TTCAGACCCCGTTCCGACTG.............................................................................................................	20	16	0.44	7	0	0	0	0	0	0	0	0	0	0	2	0	4	1	0	0	0
..................................................................................................................................................................................................................................................................................................................................................AGACCCCGTTCCGACTGCGC..........................................................................................................	20	20	0.40	8	0	0	0	1	0	0	0	0	2	1	4	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................TTCAGACCCCGTTCCGACTGCG...........................................................................................................	22	15	0.40	6	0	0	1	0	0	0	0	0	0	0	4	0	1	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................TACGTA---CTCCTCGCGTGTTGA---GA................	23	20	0.40	8	0	0	0	0	0	0	3	0	2	3	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................GCCTTCAGACCCCGTTCCGACTGCGCGC........................................................................................................	28	13	0.38	5	0	0	0	4	0	0	0	0	0	0	1	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................TTCAGACCCCGTTCCGACTGCGCGCTA......................................................................................................	27	13	0.38	5	0	0	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................TCAGACCCCGTTCCGACTGCGCGCA.......................................................................................................	25	13	0.38	5	0	0	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0
.....................................................................................................................................................................................................................................................................................................................................................................................................................................................TGTTGA---GACTGACTGCCTCGAG-C	23	8	0.38	3	0	0	0	0	0	0	0	0	2	1	0	0	0	0	0	0	0
.................................................................................................................................................................................................................TGCCGCCCGATGCTTGCACTGCTC.......................................................................................................................................................................................................................................	24	20	0.35	7	0	0	0	0	0	0	0	1	0	1	1	0	4	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................T-------CGACTATCCTCGCGT............................................	16	20	0.35	7	0	0	0	0	0	0	0	0	0	0	7	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................................................................................................TACGTA---CTCCTCGCGTGTTGA---GAC...............	24	20	0.35	7	0	0	0	1	0	0	0	0	3	3	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................TGA---GACTGACTGCCTCGA...	18	9	0.33	3	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0
..............................................................................................................................................................................................................................................................................................................................................................................................................................................................GACTGACTGCCTCGAG-.	16	12	0.33	4	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................A---CTCCTCGCGTGTTGA---GACTGACTGCCT......	28	9	0.33	3	0	0	1	0	0	0	0	2	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................................................................................................................................CCGACTGCGCGCTGACCGCGCGACT...........................................................................................	25	9	0.33	3	0	0	0	0	0	0	0	2	0	1	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................CAGACCCCGTTCCGACTGCGCGCTGACCGC.................................................................................................	30	12	0.33	4	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................T--------CCT-------CGACTATCCTCGCGTACGTA---CTCC................................	28	19	0.32	6	0	0	0	1	0	0	1	0	0	0	2	0	2	0	0	0	0
......................................................................................................................................................................................................................................................................................................................ACGCGATCTCGCTGTC..........................................................................................................................................	16	16	0.31	5	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................TA---CTCCTCGCGTGTTGA---GACT..............	21	20	0.30	6	0	0	0	0	0	0	0	0	1	0	5	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................................................................................GACTATCCTCGCGTACGTA---CTC.................................	22	20	0.30	6	0	0	0	0	0	0	0	0	0	0	0	0	6	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................................CTCGCGTGTTGA---GACTGACTGCCT......	24	10	0.30	3	0	0	1	0	0	0	1	0	0	0	0	0	0	1	0	0	0
............................................................................................................................................................................................................................................................................................................................................................................................................................................CTCCTCGCGTGTTGA---GACTGACTGC........	25	20	0.30	6	0	0	0	0	0	0	1	1	4	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................TCCGACTGCGCGCTGACCG..................................................................................................	19	20	0.30	6	0	0	1	0	0	0	1	2	1	0	1	0	0	0	0	0	0
................................................................................................................................................................................................................TTGCCGCCCGATGCTTGCACTG..........................................................................................................................................................................................................................................	22	20	0.30	6	0	0	0	0	0	0	0	0	0	0	1	0	5	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................TCCGACTGCGCGCTGACCGCGCGAC............................................................................................	25	10	0.30	3	0	0	1	0	0	0	2	0	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................TCCGACTGCGCGCTGACCGCGCGA.............................................................................................	24	10	0.30	3	0	0	1	0	0	0	1	1	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................................................................................................................................................................................................................................................TCCTCGCGTGTTGA---GACTGACTGCCTCG....	28	7	0.29	2	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................................................................GCGTGTTGA---GACTGACTGCCTCGAG-C	26	7	0.29	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCGTGTTGA---GACTGACTGCCTCGAG-.	26	7	0.29	2	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................TTCAGACCCCGTTCCGACTGCGCGT........................................................................................................	25	14	0.29	4	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCGTGTTGA---GACTGACTGCCTCGA...	25	7	0.29	2	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................TTCCGTACGCGATCTCGCTG............................................................................................................................................	20	11	0.27	3	0	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................................T--------CCT-------CGACTATCCTCGCGTACGTA---CTC.................................	27	19	0.26	5	0	0	0	0	0	0	1	0	2	0	1	0	1	0	0	0	0
.................................................................................................................................................................................................................................................................................................................TCCGTACGCGATCTCGCTGTC..........................................................................................................................................	21	16	0.25	4	0	0	1	0	0	0	0	0	0	0	3	0	0	0	0	0	0
................................................................................................................................................................................................................................GCACTGCTCCTTTCCTTCTGACTTGAA.....................................................................................................................................................................................................................	27	4	0.25	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................AGACCCCGTTCCGACTGCGCGCA.......................................................................................................	23	20	0.25	5	0	0	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0
......................................................................................................................................................................................................................................CTCCTTTCCTTCTGACTTGACCGCGCGA..............................................................................................................................................................................................................	28	4	0.25	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
................................................................................................................................................................................................................................GCACTGCTCCTTTCCTTCTGACTTGACCG...................................................................................................................................................................................................................	29	4	0.25	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................................................TTGCACTGCTCCTTTCCTTCTGACTT........................................................................................................................................................................................................................	26	4	0.25	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................GCACTGCTCCTTTCCTTCTGACTTGACCGC..................................................................................................................................................................................................................	30	4	0.25	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................AGACCCCGTTCCGACTGCGCGCTGA.....................................................................................................	25	20	0.25	5	0	0	0	1	0	0	2	1	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................TGCACTGCTCCTTTCCTTCTGACT.........................................................................................................................................................................................................................	24	4	0.25	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................CCGTTCCGACTGCGCGCTGACCGCGC...............................................................................................	26	16	0.25	4	0	0	0	0	0	0	0	3	1	0	0	0	0	0	0	0	0
..................................................................................................................................................................................................................................ACTGCTCCTTTCCTTCTGACTTGAC.....................................................................................................................................................................................................................	25	4	0.25	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................................................................CGCGTACGTA---CTCCTCGCGTGTTGA---GA................	27	20	0.25	5	0	0	0	0	0	0	1	1	0	3	0	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................CGTACGCGATCTCGCTGTC..........................................................................................................................................	19	16	0.25	4	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0
...................................................................................................................................................................................................................................................................................................................................................GACCCCGTTCCGACTGCGCGC........................................................................................................	21	20	0.25	5	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0
.......................................................................................................................................................................................................................................................................................................................................................................................................................................TA---CTCCTCGCGTGTTGA---GACTGA............	23	20	0.25	5	0	0	0	0	0	0	0	0	0	0	1	0	4	0	0	0	0
................................................................................................................................................................................................................................GCACTGCTCCTTTCCTTCTGACTTGACT....................................................................................................................................................................................................................	28	4	0.25	1	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................CACTGCTCCTTTCCTTCTGACT.........................................................................................................................................................................................................................	22	4	0.25	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................GCTCCTTTCCTTCTGACT.........................................................................................................................................................................................................................	18	4	0.25	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0
...............................................................................................................................................................................................................................TGCACTGCTCCTTTCCTTCTGACTTG.......................................................................................................................................................................................................................	26	4	0.25	1	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................CACTGCTCCTTTCCTTCTGACTTGACC....................................................................................................................................................................................................................	27	4	0.25	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................................................................CCT-------CGACTATCCTCGCGT............................................	18	20	0.25	5	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................CGGCCTTCTTCCGTACGCGATCTCGC..............................................................................................................................................	26	4	0.25	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................CACTGCTCCTTTCCTTCTGACTTGAA.....................................................................................................................................................................................................................	26	4	0.25	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0
.................................................................................................................................................................................................................................CACTGCTCCTTTCCTTCTGACTTGT......................................................................................................................................................................................................................	25	4	0.25	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0
...........................................................................................................................................................................................................................................................................................................................................................TCCGACTGCGCGCTGACCGCGC...............................................................................................	22	16	0.25	4	0	0	0	0	0	0	1	1	2	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................................TTCTTGCCGCCCGATGCTTGCACTGC.........................................................................................................................................................................................................................................	26	17	0.24	4	0	0	0	2	0	0	0	0	1	1	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................................TGA---GACTGACTGCCTCG....	17	9	0.22	2	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................TTCCGAGATCCTTCCGTTAACACT................................................................................................................................................................................	24	9	0.22	2	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................TCCTCCGCCTTCAGACCCCGTTCCGAC...............................................................................................................	27	18	0.22	4	0	0	0	0	0	0	0	0	1	0	0	0	3	0	0	0	0
........................................................................................................................................................................................................................................................................TTCCGAGATCCTTCCGT.......................................................................................................................................................................................	17	9	0.22	2	0	0	0	0	0	0	0	1	0	0	1	0	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................TTCAGACCCCGTTCCGACTGCGCGA........................................................................................................	25	14	0.21	3	0	0	0	0	0	0	0	0	1	0	1	0	1	0	0	0	0
......................................................................................................................................................................................................................................................................................................................................................CCCGTTCCGACTGCGCGCTGACCGCG................................................................................................	26	19	0.21	4	0	0	0	0	0	0	2	0	2	0	0	0	0	0	0	0	0
........................................................................................................................................................................................................................................................................................................................................................................................................................................A---CTCCTCGCGTGTTGA---..................	16	20	0.20	4	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0
.........................................................................................................................................................................................................................................................................................................................................................................................................................TATCCTCGCGTACGTA---CTCCTCGCGTG.........................	27	20	0.20	4	0	0	1	1	0	0	1	0	0	0	1	0	0	0	0	0	0
....................................................................................................................................................................................................................................................................................................................................................ACCCCGTTCCGACTGCGCGCTGACCGC.................................................................................................	27	20	0.20	4	0	0	0	0	0	0	0	3	1	0	0	0	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................................................................................TCGCGTGTTGA---GACTGACTGCCT......	23	10	0.20	2	0	0	1	0	0	0	0	0	0	0	1	0	0	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................CAGACCCCGTTCCGACTGCGCGCA.......................................................................................................	24	15	0.20	3	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0
.................................................................................................................................................................................................................................................................................................................................................................................................................................................CGCGTGTTGA---GACTGACTGCCT......	22	10	0.20	2	0	0	0	0	0	0	0	0	0	0	1	0	1	0	0	0	0
.............................................................................................................................................................................................................................................CCTTCTGACTTGACCGCGCGTCTTT..........................................................................................................................................................................................................	25	5	0.20	1	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0

dm3

ACCCTCT-------------GCCGGCCGGAA-CGGGTTTAGAATGTTATGGTG-CAGGGTGTATCGTCCACGGGC-GAGGCAACGCTCGGCCT---GG---AACCACCTTTGCTGGCCACTGACTCCA-CTGACCCTTC-------------------------------------TC---TACTCGCTTCTGTGTCCTTCGGGCTTCTTGCCGCCCGACGCTTCCACTGTTTGT-TGTTTCCGACTTGACCGCGCGTTCTCAGTCCCGAACTCCTTCTGGTAACGCTCCGACGCACTATCTCCTTCCACGCGCGATCTTGCTGTCT-----------------------------------------------------------------------------------------------------------------------AACTGACTG---------	Size	Hit Count	Total Norm	Total	GSM154618 Ovary	GSM154620 Ovary	GSM154621 Ovary	GSM154622 Ovary	GSM180328 Head	GSM180329 Mixed-body	GSM180330 Embryo	GSM180331 Embryo	GSM180332 Embryo	GSM180333 Embryo	GSM180334 Larvae	GSM180335 Disc	GSM180336 Pupae	GSM180337 S2	GSM231091 Ovary	GSM239041 Head	GSM239050 Head	GSM239051 S2	GSM239052 S2	GSM246084 Head	GSM266765 S2	GSM280082 Ovary	GSM280083 Ovary	GSM280084 Ovary	GSM280085 Testis	GSM280086 Ovary	GSM280087 S2-NP	GSM280088 S2-NP	GSM312995 Head	GSM313160 Head	GSM313161 Head	GSM313162 Head	GSM313163 Head	GSM313164 Head	GSM313165 Head	GSM343287 Embryo	GSM379050 Ovary	GSM379051 Ovary	GSM379052 Ovary	GSM379053 Ovary	GSM379054 Ovary	GSM379055 Ovary	GSM379056 Ovary	GSM379057 Ovary	GSM379058 Ovary	GSM379059 Ovary	GSM379060 Ovary	GSM379061 Ovary	GSM379062 Ovary	GSM379063 Ovary	GSM379064 Ovary	GSM379065 Ovary	GSM379066 Ovary	GSM379067 Ovary	GSM424739 S2	GSM424740 S2	GSM424741 S2	GSM467729 Female-body	GSM467730 Female-body	GSM467731 Female-body	M002 CS	M003 Male-body	M004 Male-body	M005 ML-DmD32	M006 ML-DmD32	M029 OSC	M030 OSC	M031 OSC	M032 S2-R+	M033 S2-R+	M034 S2-R+	M035 S2-R+	M036 S2-R+	M037 S2-R+	M038 S2-R+	M039 S2-R+	M048 S2-R+	OSS2 OSS	OSS6 OSS	OSS7 OSS	OSS8 OSS	S1 Head	S10 Embryo	S11 Embryo	S12 Embryo	S13 Embryo	S14 Embryo	S15 S2-GMR	S16 Kc	S17 Larvae	S18 Larvae	S19 Pupae	S2 Head	S20 Pupae	S21 Disc	S22 Head	S23 Female-body	S24 Male-body	S25 Larvae	S26 Larvae	S27 Pupae	S28 Pupae	S29 Head	S3 Male-body	S30 S2-GMR	S31 S2	S32 S2	S33 Kc	S34 Kc	S35 Kc	S4 Female-body	S5 Disc	S6 Embryo	S7 Embryo	S8 S2	S9 Embryo	SRR001337 Head	SRR001338 Head	SRR001339 Head	SRR001340 Head	SRR001341 Head	SRR001342 Head	SRR001343 Head	SRR001344 Head	SRR001345 Head	SRR001346 Head	SRR001347 Head	SRR001348 Head	SRR001349 Head	SRR001664 Head	SRR010951 Ovary	SRR010952 Ovary	SRR010953 Ovary	SRR010954 Ovary	SRR010955 Ovary	SRR010956 Ovary	SRR010957 Ovary	SRR010958 Ovary	SRR010959 Ovary	SRR010960 Ovary	SRR014268 Embryo	SRR014269 Embryo	SRR014270 Embryo	SRR014271 Embryo	SRR014272 Embryo	SRR014273 Ovary	SRR014274 Ovary	SRR014275 Ovary	SRR014276 Ovary	SRR014277 Ovary	SRR014278 Ovary	SRR014279 Ovary	SRR014280 Ovary	SRR014281 Ovary	SRR014282 Ovary	SRR023197 S2	SRR023399 S2	SRR023400 S2	SRR023402 S2	SRR023407 S2	SRR029028 S2	SRR029029 S2	SRR029030 S2	SRR029031 S2	SRR029032 S2	SRR029033 S2	SRR029608 Head	SRR029633 Head	SRR030145 gb3	SRR031692 Head	SRR031693 Head	SRR031694 Head	SRR031696 Head	SRR031697 Head	SRR031698 Head	SRR031699 Head	SRR031700 Head	SRR031701 Head	SRR031702 Head	SRR031703 Head	SRR031704 Head	SRR032092 S2	SRR032093 S2	SRR032094 S2	SRR032095 S2-NP	SRR032096 S2-NP	SRR032152 Head	SRR060643 Testis	SRR060644 Ovary	SRR060645 Testis	SRR060646 Ovary	SRR060647 Ovary	SRR060648 Ovary	SRR060649 Ovary	SRR060650 Testis	SRR060651 Ovary	SRR060652 Testis	SRR060653 Ovary	SRR065151 Ovary	SRR065152 Ovary	SRR065153 Ovary	SRR065154 Ovary	SRR065155 Ovary	SRR065800 Ovary	SRR065801 Ovary	SRR065802 Ovary	SRR065803 Ovary	SRR065804 Ovary	SRR065805 Ovary	SRR065806 Ovary	SRR065807 Ovary	SRR097865 S2-NP	SRR097866 S2-NP	SRR097867 S2-NP	SRR298536 Ovary	SRR298537 Ovary	SRR298711 Ovary	SRR298712 Ovary	SRR317110 Ovary	SRR317111 Ovary	SRR317112 Ovary	SRR317113 Ovary	SRR317114 Ovary	SRR317115 Ovary	SRR317116 Ovary	SRR317117 Ovary	SRR341115 S2	SRR341116 S2	SRR341117 S2	SRR341118 S2	SRR351332 Mixed-body	SRR351333 Mixed-body	T004 OSC	T005 CME-L1	V001 Embryo	V002 Embryo	V003 S2	V006 Female-body	V007 Head	V008 S2	V009 CME-L1	V010 ML-DmD20-C5	V011 Sg4	V012 Male-body	V013 Head	V014 DTT	V015 DreRFHV	V018 Kc167	V019 GM2	V020 S2-R+	V021 ML-DmD21	V022 ML-DmD32	V023 Head	V024 Kc167	V025 S2-R+	V026 1182-2H	V027 ML-DmD21	V028 CME-W1-Cl.8+	V029 ML-DmD9	V030 ML-DmD8	V031 GM2	V032 S1	V033 CME-W1-Cl.8+	V034 ML-DmD16-C3	V035 ML-DmD32	V036 ML-DmD20-C5	V037 S2	V038 S2	V063 Ovary	V0632 Ovary	V064 Ovary	V0642 Ovary	V065 Ovary	V0652 Ovary	V066 Ovary	V0662 Ovary	V067 S2-NP	V073 mbn2	V074 S3	V075 ML-DmBG1-C1	V076 ML-DmBG3-C2	V077 Head	V078 Head	V079 Head	V080 Head	V081 Embryo	V082 Embryo	V083 Male-body	V084 Female-body	V085 CME-W2	V086 Female-body	V088 Ovary	V0882 Ovary	V089 Ovary	V0892 Ovary	V090 Male-body	V091 fGS/OSS	V092 Male-body	V093 Male-body	V094 S2-R+	V095 S2-R+	V096 Ovary	V097 Ovary	V098 Ovary	V125 ML-DmD9	V126 CME-L1	V127 G2	V128 S3	V129 ML-DmBG1-C1	V130 ML-DmBG3-C2	V131 ML-DmD16-C3	V132 ML-DmD32	V133 Sg4	V134 ML-DmD8	V135 CME-W2	V136 Male-body	V137 Head	V138 Male-body	V139 Female-body	V140 Female-body	V141 Female-body	V142 Female-body	V144 OSC	V145 S2	V146 S1	V147 1182-2H	V148 mbn2	GSM1528798 follicle cells
...........................................TGTTATGGTG-CAGGGTGTATCGTC............................................................................................................................................................................................................................................................................................................................................................................................................	24	20	38.50	770	0	0	0	0	0	0	0	2	0	0	0	1	0	0	0	0	0	0	0	0	0	0	1	3	0	0	0	0	0	0	0	0	0	0	0	0	5	0	6	0	0	2	2	1	6	1	6	0	5	0	2	3	14	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	15	2	10	9	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	0	0	0	0	0	0	1	0	1	0	5	1	0	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	1	4	27	0	1	0	1	1	11	0	13	15	5	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	8	3	17	0	1	1	0	4	0	11	0	0	0	0	0	0	5	0	10	0	5	0	0	0	0	0	23	0	6	0	2	0	3	1	0	3	6	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	0	0	0	0	19	47	23	34	0	1	0	0	0	0	105	118	18	0	0	0	0	0	0	0	0	0	0	0	0	0	0	17	26	24	23	0	0	0	0	0	0
............................................................................................................................................................................................................................................TGTTTCCGACTTGACCGCGCGTTC............................................................................................................................................................................................................	24	1	37.00	37	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	7	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	1	0	0	0	0	0	4	16	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................................TTTAGAATGTTATGGTG-CAGGGTGTA.................................................................................................................................................................................................................................................................................................................................................................................................................	26	1	27.00	27	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	2	1	0	1	0	1	0	2	0	0	0	0	0	0	0	2	0	1	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	2	2	0	0	0	0	0	0
...............................................................................................................................................................................................TGTGTCCTTCGGGCTTCTTGCCGC.........................................................................................................................................................................................................................................................	24	1	27.00	27	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	1	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	3	0	1	4	4	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.............................................................................................................................................................................................TCTGTGTCCTTCGGGCTTCTTGCCGC.........................................................................................................................................................................................................................................................	26	1	26.00	26	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	3	0	4	5	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..........................................................................................................................................................................................................................................T-TGTTTCCGACTTGACCGCGCGTTC............................................................................................................................................................................................................	25	1	25.00	25	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	4	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	4	0	0	3	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	2	0	0	0	0	0	0	6	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................TTCTGTGTCCTTCGGGCTTCTTGCCGC.........................................................................................................................................................................................................................................................	27	1	25.00	25	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	5	0	2	0	5	2	6	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
............................................................................................................................................................................................................................................TGTTTCCGACTTGACCGCGCGT..............................................................................................................................................................................................................	22	1	19.00	19	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	3	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	1	5	0	0	0	0	1	2	3	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
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...................................................................................................................................................................................................................................................................CTCAGTCCCGAACTCCTTCTGGTAACGCTC...............................................................................................................................................................................	30	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
....................GCCGGCCGGAA-CGGGTTTAGAATGT..................................................................................................................................................................................................................................................................................................................................................................................................................................	25	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
..............................................................................................................................................................................................CTGTGTCCTTCGGGCTTCTTG.............................................................................................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
...............................................................................................................................................................................................TGTGTCCTTCGGGCTTCTTGCCG..........................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.....................................................................................................................................................................................................................................................................CAGTCCCGAACTCCTTCTGGT......................................................................................................................................................................................	21	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0
.................................................................................................................................................................................C---TACTCGCTTCTGTGTCCTTCGG.....................................................................................................................................................................................................................................................................	23	1	1.00	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	1	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0	0

droTak1

TCCGT-----------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTGTCCGTCTGTCTGTCTGTCTG-TCTG	Size	Hit Count	Total Norm	Total
No Reads

droAna3

TTCTGTC--------------------------------------------------------------------------------------------------------------------------------------------------------CGTCTGTCTGTCTGTCCGTCTGTCCGTCTGTCC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTCTGTCTGTCTGTCCGTC-------------------------------------------------------------------TGTCTGTC--GGT-T	Size	Hit Count	Total Norm	Total	M044 Female-body	M058 Embryo	V039 Embryo	V055 Head	V105 Male-body	V106 Head
...............................................................................................................................................................................CGTCTGTCCGTCTGTCC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTCTG................................................................................................	22	20	0.05	1	1	0	0	0	0	0
....GTC--------------------------------------------------------------------------------------------------------------------------------------------------------CGTCTGTCTGTCTGTC.................................................................................................................................................................................................................................................................................................	19	20	0.05	1	1	0	0	0	0	0
................................................................................................................................................................GTCTGTCTGTCTGTCCGTCTG...........................................................................................................................................................................................................................................................................................	21	20	0.05	1	1	0	0	0	0	0
................................................................................................................................................................................................................................................................................................................................................................................TCTGTCTGTCCGTC-------------------------------------------------------------------TGTCTGTC--GGT-T	26	20	0.05	1	1	0	0	0	0	0
..................................................................................................................................................................................................................................................................................................................................................................................TGTCTGTCCGTC-------------------------------------------------------------------TGTCTGTC--G....	21	20	0.05	1	1	0	0	0	0	0
...............................................................................................................................................................................................................................................................................................................................................................................GTCTGTCTGTCCGTC-------------------------------------------------------------------TGTCTGTC--.....	23	20	0.05	1	0	1	0	0	0	0
............................................................................................................................................................................................GTCC---------------------------------------------------------------------------------------------------------------------------------------------------------------------------GTCTGTCTGTCTGTCCGTC-------------------------------------------------------------------TG.............	25	20	0.05	1	1	0	0	0	0	0

der_293

scaffold_4218:1713-1863 +

Candidate

Unknown

Predicted structure

Flybase annnotation

Sense Strand Reads

Anti-sense strand reads

Re-alignment of all predicted orthologs

Re-alignment of all predicted orthologs with sRNA reads

-33.7	-33.3	-33.3