ID:

der_288

 Coordinate:

scaffold_3522:8998-9092 +

 Confidence:

Candidate

 Type:

Unknown

 [View on UCSC Genome Browser {Cornell Mirror}]
Legend: mature star mismatch in alignment mismatch in read

Predicted structure

No conservation details.

-14.4

Flybase annnotation

intron [Dere\GG13053-in]; exon [dere_GLEANR_13203:18]; CDS [Dere\GG13053-cds]; exon [dere_GLEANR_13203:17]; CDS [Dere\GG13053-cds]; intron [Dere\GG13053-in]

Repeatable elements

NameClassFamilyStrand
AT_richLow_complexityLow_complexity+
mature
  1. scaffold_3522:2501-2527 +
  2. der_288  scaffold_3522:9044-9070 +
star
  1. scaffold_1024:770-794 -
  2. scaffold_3215:723-747 +
  3. scaffold_3319:5468-5492 -
  4. scaffold_3471:9905-9929 +
  5. scaffold_3522:2456-2480 +
  6. der_288  scaffold_3522:8999-9023 +
  7. scaffold_4929:1339-1363 -
  8. scaffold_4929:7710-7734 -
  9. scaffold_4929:14184-14208 -

Sense Strand Reads

##################################################-----------------------------------------------------------------------------------------------#################################-----------------
ATCGAGCAGGGCCCGGCGAACACATCTGCAGTAGGAGCTCCACTTTCAGTGTGAGTAGTAAAATGTCTGCATTTGCATGGCAGTAGTCGTGGGTGCTCCAATTTTAGTGTGATTATTTTAATTTAATATTTTTCTTTATTTTCAGGTCAACAGGAGCTAGAGATGAAATTGGACTTGGGTAAGTGGCTGTTATTT
***************************************************....((.((((((....(((((..((((((....)))))))))))....)))))).))..............************************************************************************ 		Read size # Mismatch Hit Count Total Norm Total M055
female body
 GSM1528801
follicle cells		 V107
male body		 V040
embryo
............CCGGCGAACACATCTGCAGTAGGAGC............................................................................................................................................................. 26 0 13 1.23 16 0 16 0 0
...................................................................................................................................TTCTTTATTTTCAGGTCAACAGGAG....................................... 25 0 20 0.60 12 6 6 0 0
................................................................................................TCCAATTTTAGTGTGATTATTTTAATT........................................................................ 27 0 2 0.50 1 1 0 0 0
...................................................TGAGTAGTAAAATGTCTGCATTTGC....................................................................................................................... 25 0 9 0.33 3 3 0 0 0
............CCGGCGAACACATCTGCCGTAGGAGC............................................................................................................................................................. 26 1 13 0.31 4 0 4 0 0
............CCGGCGAACACATCTGCAGTAGGAG.............................................................................................................................................................. 25 0 13 0.31 4 0 4 0 0
.........................................................................................................................TTTAATATTTTTCTTTATTTTCAGG................................................. 25 0 20 0.30 6 6 0 0 0
...................................................................TGCATTTGCATGGCAGTAGTCGTGGG...................................................................................................... 26 0 10 0.30 3 3 0 0 0
.......................ATCTGCAGTAGGAGCTCCACTTT..................................................................................................................................................... 23 0 20 0.30 6 6 0 0 0
...........................................TTTCAGTGTGAGTAGTAAAATGTC................................................................................................................................ 24 0 14 0.29 4 4 0 0 0
..........................................................TAAAATGTCTGCATTTGCATGGCA................................................................................................................. 24 0 9 0.22 2 2 0 0 0
.............................................................................................................................................TCAGGTCAACAGGAGCTAGAGATGA............................. 25 0 10 0.20 2 2 0 0 0
...................................................................................................................................TTCTTTATTTTCAGGTCAACAGGA........................................ 24 0 20 0.20 4 0 4 0 0
...................................................................TGCATTTGCATGGCAGTAGTCGTG........................................................................................................ 24 0 10 0.20 2 2 0 0 0
..........................................................................................................................................TTTTCAGGTCAACAGGAGCTAGAGA................................ 25 0 16 0.19 3 3 0 0 0
.......................ATCTGCAGTAGGAGCTCCACTTTCAG.................................................................................................................................................. 26 0 20 0.15 3 3 0 0 0
...................................................................................................................................TTCTTTATTTTCAGGTCAACAGGAGC...................................... 26 0 20 0.15 3 3 0 0 0
..............................................................................................................................................................AGAGATGAAATTGGACTTGGGTCAA............ 25 2 7 0.14 1 1 0 0 0
.................................................................................................................................................................GATGAAATTGGACTTGGGTAAGTGG......... 25 0 7 0.14 1 0 0 1 0
.........................................................................................................................................ATTTTCAGGTCAACAGGAGCTAGAGA................................ 26 0 16 0.13 2 2 0 0 0
..................................................................................................................................................TCAACAGGAGCTAGAGATGAAA........................... 22 0 8 0.13 1 1 0 0 0
......................................................................................................................................................CAGGAGCTAGAGATGAAATTGGACTTG.................. 27 0 8 0.13 1 1 0 0 0
..................................................................................................................................................TCAACAGGAGCTAGAGATGAAATTGGAC..................... 28 0 8 0.13 1 1 0 0 0
.............................................................................................................................................................TAGAGAAGAAATTGGACTTGGGTT.............. 24 2 8 0.13 1 1 0 0 0
..................................................................................................................................................TCAACAGGAGCTAGAGATGAAATTGG....................... 26 0 8 0.13 1 1 0 0 0
....................CACATCTGCAGTAGGAGCTCCACTT...................................................................................................................................................... 25 0 16 0.13 2 2 0 0 0
....................CACATCTGCAGTAGGAGCTCCACT....................................................................................................................................................... 24 0 16 0.13 2 2 0 0 0
..................................................................................................................................................TCAACAGGAGCTAGAGATGAAATTG........................ 25 0 8 0.13 1 1 0 0 0
...................................................................................................................................................................TGAAATTGGACTTGGGTAAGTGGCTGT..... 27 0 9 0.11 1 1 0 0 0
....................................................................................................................................................AACAGGAGCTAGAGATGAAATTG........................ 23 0 9 0.11 1 1 0 0 0
..................................................................................................................................................TCAACAGGAGCTAGAGATGAA............................ 21 0 9 0.11 1 1 0 0 0
..................................................................................................................................................TCAACATGAGCTAGAGATGAAATTGGAC..................... 28 1 9 0.11 1 1 0 0 0
......................................................................................................................................................CAGGAGCTAGAGATGAAATTGGAC..................... 24 0 9 0.11 1 1 0 0 0
...................................................................................................................................................................TGAAATTGGACTTGGGTAAGTGGCTG...... 26 0 9 0.11 1 1 0 0 0
..........................................................TAAAATGTCTGCATTTGCATGGC.................................................................................................................. 23 0 9 0.11 1 1 0 0 0
.....................................................................................................................................................ACAGGAGCTAGAGATGAAATTGGACT.................... 26 0 9 0.11 1 1 0 0 0
..................................................GTGAGTAGTAAAATGTCTGCATTTGCA...................................................................................................................... 27 0 9 0.11 1 1 0 0 0
..............................................................................................................................................................AGAGATGAAATTGGACTTGGACT.............. 23 3 9 0.11 1 1 0 0 0
...........................................................AAAATGTCTGCATTTGCATGGCA................................................................................................................. 23 0 9 0.11 1 1 0 0 0
...................................................................TGCATTTGCATGGCAGTAGTCGTGG....................................................................................................... 25 0 10 0.10 1 1 0 0 0
........................TCTGCAGTAGGAGCTCCACTTTCAGTG................................................................................................................................................ 27 0 20 0.10 2 2 0 0 0
.................................................................TCTGCATTTGCATGGCAGTAGTCGTGG....................................................................................................... 27 0 10 0.10 1 1 0 0 0
.................................................................TCTGCATTTGCATGGCAGTAGTCGTG........................................................................................................ 26 0 10 0.10 1 1 0 0 0
.......................ATCTGCAGTAGGAGCTCCACT....................................................................................................................................................... 21 0 20 0.10 2 2 0 0 0
........................TCTGCAGTAGGAGCTCCACTTTCAG.................................................................................................................................................. 25 0 20 0.10 2 2 0 0 0
..........................TGCAGTAGGAGCTCCACTTTCAGT................................................................................................................................................. 24 0 20 0.10 2 2 0 0 0
.....................................................AGTAGTAAAATGTCTGCCTTTGCAT..................................................................................................................... 25 1 10 0.10 1 0 1 0 0
...................................................................................................................................TTCTTTATTTTCAGGTCCACAGGAG....................................... 25 1 20 0.10 2 0 2 0 0
...................................................................................................................................TTCTTTATTTTCAGGTCCACAGGA........................................ 24 1 20 0.10 2 0 2 0 0
.......................ATCTGCAGTAGGAGCTCCACTTTCAGTG................................................................................................................................................ 28 0 20 0.10 2 2 0 0 0
.............................................................................................................................................TCAGGTCAACAGGAGCTAGAGAAGA............................. 25 1 11 0.09 1 1 0 0 0
.......................................................................TTTGCATGGCAGTAGTCGTGGG...................................................................................................... 22 0 11 0.09 1 1 0 0 0
ATCGAGCAGGGCCCGGCGAACACATC......................................................................................................................................................................... 26 0 12 0.08 1 1 0 0 0
...............................................AGTGTGAGTAGTAAAATGTCTGCATT.......................................................................................................................... 26 0 12 0.08 1 1 0 0 0
...............................................AGTGTGAGTAGTAAAATGTCTGCAT........................................................................................................................... 25 0 12 0.08 1 1 0 0 0
........................................CACTTTCAGTGTGAGTAGTAAAATGTC................................................................................................................................ 27 0 12 0.08 1 1 0 0 0
ATCGAGCAGGGCCCGGCGAACAC............................................................................................................................................................................ 23 0 12 0.08 1 1 0 0 0
........................................CACTTTCAGTGTGAGTAGTAAAATG.................................................................................................................................. 25 0 12 0.08 1 1 0 0 0
...GAGCAGGGCCCGGCGAACACATCTGCAC.................................................................................................................................................................... 28 1 13 0.08 1 1 0 0 0
....AGCAGGGCCCGGCGAACAC............................................................................................................................................................................ 19 0 13 0.08 1 0 0 0 1
.TCGAGCAGGGCCCGGCGAACACATC......................................................................................................................................................................... 25 0 13 0.08 1 1 0 0 0
.TCGAGCAGGGCCCGGCGAACACAT.......................................................................................................................................................................... 24 0 13 0.08 1 1 0 0 0
...........................................TTTCAGTGTGAGTAGTAAAATGTCTGCA............................................................................................................................ 28 0 13 0.08 1 1 0 0 0
...............GCGAACACATCTGCAGTAGGAGCTCC.......................................................................................................................................................... 26 0 13 0.08 1 1 0 0 0
......................CATCTGCAGTAGGAGCTCCACTTTCAG.................................................................................................................................................. 27 0 13 0.08 1 1 0 0 0
.................GAACACATCTGCAGTAGGAGCTCCAAA....................................................................................................................................................... 27 2 13 0.08 1 1 0 0 0
.............................................TCAGTGTGAGTAGTAAAATGCCTGCA............................................................................................................................ 26 1 13 0.08 1 1 0 0 0
............CCGGCGAACACATGTGCAGTAGGAGC............................................................................................................................................................. 26 1 13 0.08 1 0 1 0 0
...........CCCGGCGAACACATCTGCAGTAGGAG.............................................................................................................................................................. 26 0 13 0.08 1 1 0 0 0
.............................................TCAGTGTGAGTAGTAAAATGTCTGCA............................................................................................................................ 26 0 13 0.08 1 1 0 0 0
......................................................................................................................................................................AATTGGACGTGGGTTAGTCG......... 20 3 13 0.08 1 0 0 1 0
..............GGCGAACACATCTGCAGTAGGAG.............................................................................................................................................................. 23 0 13 0.08 1 1 0 0 0
...........CCCGGCGAACACATCTGCAGGAGGAG.............................................................................................................................................................. 26 1 13 0.08 1 1 0 0 0
.............................................................................................................................................TAGTGTCAACAGGAGCTAGAGATGA............................. 25 3 14 0.07 1 1 0 0 0
..................................................................................................................................................TCAACAGGAGCTAGAGATGA............................. 20 0 14 0.07 1 1 0 0 0
...........................................TTTCAGTGTGAGTAGTAAAATGTCT............................................................................................................................... 25 0 14 0.07 1 1 0 0 0
..........................................CTTTCAGTGTGAGTAGTAAAATGT................................................................................................................................. 24 0 14 0.07 1 1 0 0 0
..........................................CTTTCAGTGTGAGTAGTAAAATGTC................................................................................................................................ 25 0 14 0.07 1 1 0 0 0
................................................................................................................................................TGTCAACAGGAGCTAGAGATGA............................. 22 1 14 0.07 1 1 0 0 0
.................................................TGTGAGTAGTAAAATGTCTGCATT.......................................................................................................................... 24 0 14 0.07 1 1 0 0 0
...........................................TTTCAGTGTGAGTAGTAAAATGTCTGC............................................................................................................................. 27 0 14 0.07 1 1 0 0 0
............................................................................................................................................TTCAGGTCAACAGGAGCTAGAGATG.............................. 25 0 15 0.07 1 1 0 0 0
............................................................................................................................................TTCAGGTCAACAGGAGCTAGAGAT............................... 24 0 15 0.07 1 1 0 0 0
............CCGGCGACCACATCTGCAGTAGGAGC............................................................................................................................................................. 26 1 16 0.06 1 0 1 0 0
....................CACATCTGCAGTAGGAGCTCCACTTT..................................................................................................................................................... 26 0 16 0.06 1 1 0 0 0
...........................................................................................................................................TTTCAGGTCAACAGGAGCTAGAGA................................ 24 0 16 0.06 1 1 0 0 0
.....................ACATCTGCAGTAGGAGCTCCAC........................................................................................................................................................ 22 0 17 0.06 1 1 0 0 0
......................CATCTGCAGTAGGAGCTCCACTT...................................................................................................................................................... 23 0 17 0.06 1 1 0 0 0
.............................................................................TGGCAGTAGTCGTGGGTGCTCC................................................................................................ 22 0 18 0.06 1 1 0 0 0
.......................................................................................CGTGGGTGCTCCAATTTTAGTGT..................................................................................... 23 0 19 0.05 1 1 0 0 0
.......................ATCTGCAGTAGGAGCTCCACTTTA.................................................................................................................................................... 24 1 20 0.05 1 1 0 0 0
........................TCTGCAGTAGGAGCTCCACTTTCAGT................................................................................................................................................. 26 0 20 0.05 1 1 0 0 0
...............................TAGGAGCTCCACTTTCAGTG................................................................................................................................................ 20 0 20 0.05 1 1 0 0 0
........................TCTGCAGTAGGAGCTCCACTTTCT................................................................................................................................................... 24 1 20 0.05 1 1 0 0 0
.........................................................................................................................................................................TGGACTTGGGTAAGTGGCTGTTATTT 26 0 20 0.05 1 1 0 0 0
.....................................................................................................................................CTTTATTTTCAGGTCAACAGGAGCT..................................... 25 0 20 0.05 1 1 0 0 0
.......................................................................................................................................................................ATTGGACTTGGGTAAGTGGCTGT..... 23 0 20 0.05 1 1 0 0 0
...................................................................................................................................TTCTTTATTTTCAGGTCAACCGGAGC...................................... 26 1 20 0.05 1 1 0 0 0
........................................................................................................................................................................TTGGACTTGGGTAAGTGGCT....... 20 0 20 0.05 1 1 0 0 0
.......................ATCTGCAGTAGGAGCTCCACTT...................................................................................................................................................... 22 0 20 0.05 1 1 0 0 0
..........................TGCAGTAGGATCTCCACTTTCAGTG................................................................................................................................................ 25 1 20 0.05 1 1 0 0 0
..................................................................................................................................TTTCTTTATTTTCAGGTCAACAGGAGC...................................... 27 0 20 0.05 1 1 0 0 0
........................................................................................................................................................................TTGGACTTGGGTAAGTGGCTGTTAT.. 25 0 20 0.05 1 1 0 0 0
..........................TGCAGTAGGAGCTCCACTTTCAGG................................................................................................................................................. 24 1 20 0.05 1 1 0 0 0
..........................TGCAGTAGGAGCTCCACTTTCAGTGTG.............................................................................................................................................. 27 0 20 0.05 1 1 0 0 0
.............................................................................................................................................TCAGGTCAACAGGAGCTAGA.................................. 20 0 20 0.05 1 1 0 0 0
.....................................................................................................................................CTTTATTTTCAGGTCAACAGGAGC...................................... 24 0 20 0.05 1 1 0 0 0
.......................ATCTGCAGTAGGAGCTCCACTTTCA................................................................................................................................................... 25 0 20 0.05 1 1 0 0 0
................................................................................................................................TTCTTCTTTATTTTCAGGTCAACTGG......................................... 26 2 20 0.05 1 0 1 0 0
...................................................................................................................................TTCTTTATTTTCAGGTCAACAGGAGCTA.................................... 28 0 20 0.05 1 1 0 0 0
.........................................................................................................................................ATTTTCAGGTCAACAGGAGCTAGA.................................. 24 0 20 0.05 1 1 0 0 0
.........................CTGCAGTAGGAGCTCCACTTTCAGTG................................................................................................................................................ 26 0 20 0.05 1 1 0 0 0
...................................................................................................................................TTCTTTATTTTCAGGTCAACAGGAGCT..................................... 27 0 20 0.05 1 0 0 1 0
............................................................................................................................................TTCAGGTCAACAGGAGCTAGAG................................. 22 0 20 0.05 1 1 0 0 0
......................................................................................................................................TTTATTTTCAGGTCAACAGGAGCTAG................................... 26 0 20 0.05 1 1 0 0 0
....................................................................................................................................TCTTTATTTTCAGGTCAACAGGAGC...................................... 25 0 20 0.05 1 0 0 1 0
........................TCTGCAGTAGGAGCTCCACTTTCAGTGTC.............................................................................................................................................. 29 1 20 0.05 1 1 0 0 0
..........................TGCAGTAGGAGCTCCACTTTCAGTG................................................................................................................................................ 25 0 20 0.05 1 1 0 0 0
........................................................................................................................................................................TTGGACTTGGGTAAGTGGCTG...... 21 0 20 0.05 1 1 0 0 0
..........................TGCAGTAGGAGCTCCACTTTCAG.................................................................................................................................................. 23 0 20 0.05 1 1 0 0 0
..........................................................................................................................TTAATATTTTTCTTTATTTTCAGG................................................. 24 0 20 0.05 1 1 0 0 0
...............................TAGGAGCTCCACTTTCAGTGTGAGTA.......................................................................................................................................... 26 0 20 0.05 1 1 0 0 0

Anti-sense strand reads

TAGCTCGTCCCGGGCCGCTTGTGTAGACGTCATCCTCGAGGTGAAAGTCACACTCATCATTTTACAGACGTAAACGTACCGTCATCAGCACCCACGAGGTTAAAATCACACTAATAAAATTAAATTATAAAAAGAAATAAAAGTCCAGTTGTCCTCGATCTCTACTTTAACCTGAACCCATTCACCGACAATAAA
************************************************************************....((.((((((....(((((..((((((....)))))))))))....)))))).))..............*************************************************** 		Read size # Mismatch Hit Count Total Norm Total GSM1528801
follicle cells		 M055
female body
 M057
embryo
 V107
male body		 V040
embryo
 V108
head
........CCCGGGCCGCTTGTGTAGACGTCAT.................................................................................................................................................................. 25 0 11 9.00 99 55 42 2 0 0 0
.........CCGGGCCGCTTGTGTAGACGTCAT.................................................................................................................................................................. 24 0 11 7.55 83 57 25 1 0 0 0
..........CGGGCCGCTTGTGTAGACGTCATCCT............................................................................................................................................................... 26 0 13 5.23 68 60 8 0 0 0 0
.......TCCCGGGCCGCTTGTGTAGACGTCAT.................................................................................................................................................................. 26 0 11 4.36 48 43 5 0 0 0 0
...........GGGCCGCTTGTGTAGACGTCATCCTCG............................................................................................................................................................. 27 0 13 3.23 42 42 0 0 0 0 0
........CCCGGGCCGCTTGTGT........................................................................................................................................................................... 16 0 13 2.54 33 33 0 0 0 0 0
.....CGTCCCGGGCCGCTTGTGTAGACGTCAT.................................................................................................................................................................. 28 0 11 2.00 22 22 0 0 0 0 0
......................GTAGACGTCATCCTCGAGGTGAAAGT................................................................................................................................................... 26 0 17 1.76 30 22 8 0 0 0 0
........TCCGGGCCGCTTGTGTAGACGTCAT.................................................................................................................................................................. 25 1 11 1.55 17 17 0 0 0 0 0
...........GGGCCGCTTGTGTAGACGTCATCCT............................................................................................................................................................... 25 0 13 1.54 20 18 2 0 0 0 0
..........CGGGCCGCTTGTGTAGACGTCAT.................................................................................................................................................................. 23 0 13 1.23 16 0 16 0 0 0 0
.......TCCCGGGCCGCTTGTGTAG......................................................................................................................................................................... 19 0 13 1.23 16 16 0 0 0 0 0
.................................CCTCGAGGTGAAAGTCACACTCAT.......................................................................................................................................... 24 0 20 1.15 23 23 0 0 0 0 0
...........................................................................................................................................................CGATCTCTACTTTAACCTGAACCCATT............. 27 0 7 0.86 6 0 6 0 0 0 0
.........ACGGGCCGCTTGTGTAGACGTCAT.................................................................................................................................................................. 24 1 13 0.77 10 9 1 0 0 0 0
......GTCCCGGGCCGCTTGTGTAGACGTCAT.................................................................................................................................................................. 27 0 11 0.73 8 1 7 0 0 0 0
........CCCGGGCCGCTCGTGTAGACGTCATCCT............................................................................................................................................................... 28 1 17 0.71 12 12 0 0 0 0 0
.....................................................................................CAGCACCCACGAGGTTAAAATCACACT................................................................................... 27 0 12 0.67 8 0 7 1 0 0 0
...........................................................................................................................................................CGATCTCTACTTTAACCTGAACCCAT.............. 26 0 8 0.63 5 0 5 0 0 0 0
.........CCGGGCCGCTGGTGTAGACGTCAT.................................................................................................................................................................. 24 1 12 0.58 7 7 0 0 0 0 0
......GTCCCGGGCCGCTTGTGTAGACGT..................................................................................................................................................................... 24 0 13 0.54 7 0 7 0 0 0 0
...........................................................................................CCACGAGGTTAAAATCACACTAATAAAAT........................................................................... 29 0 2 0.50 1 0 0 0 1 0 0
........................................................................................CACCCACGAGGTTAAAATCACACTAAT................................................................................ 27 0 2 0.50 1 0 1 0 0 0 0
................................................................................................................................................CCAGTTGTCCTCGATCTCTACTTTAACCT...................... 29 0 8 0.50 4 0 3 1 0 0 0
......................GTAGACGTCCTCCTCGAGGTGAAAGT................................................................................................................................................... 26 1 17 0.47 8 8 0 0 0 0 0
.....CGTCCCGGGCCGCTTGTGTAGACGT..................................................................................................................................................................... 25 0 13 0.46 6 0 6 0 0 0 0
.............GCCGCTTGTGTAGACGTCAT.................................................................................................................................................................. 20 0 13 0.46 6 5 1 0 0 0 0
.AGCTCGTCCCGGGCTGCTTGTGT........................................................................................................................................................................... 23 1 13 0.46 6 6 0 0 0 0 0
.......TCCCGGGCCGCTTGTGTAGACGTCATCCT............................................................................................................................................................... 29 0 11 0.45 5 3 2 0 0 0 0
.........CCGGGCCGCTTGTGTAGACGTCATCCT............................................................................................................................................................... 27 0 11 0.45 5 4 1 0 0 0 0
........CCCGGGCCGCTTGTGTAGACGTCATCCT............................................................................................................................................................... 28 0 11 0.45 5 0 5 0 0 0 0
................................................................................................................................................CCAGTTGTCCTCGATCTCTACTT............................ 23 0 9 0.44 4 0 3 1 0 0 0
..............................................................................................................................................................TCTCTACTTTAACCTGAACCCATTCA........... 26 0 7 0.43 3 0 3 0 0 0 0
............GGCCGCTTGTGTAGACGTCATCCT............................................................................................................................................................... 24 0 13 0.38 5 0 5 0 0 0 0
...CTCGTCCCGGGCCGCTTGTGTAG......................................................................................................................................................................... 23 0 13 0.38 5 5 0 0 0 0 0
...............CGCTTGTGTAGACGTCATCCTCGAGGT......................................................................................................................................................... 27 0 13 0.38 5 0 5 0 0 0 0
................................................................................................................................................CCAGTTGTCCTCGATCTCTACTTT........................... 24 0 8 0.38 3 0 3 0 0 0 0
.............................TCATCCTCGAGGTGAAAGTCACAC.............................................................................................................................................. 24 0 20 0.35 7 0 7 0 0 0 0
...........................CGTCATCCTCGAGGTGAAAGTCACAC.............................................................................................................................................. 26 0 20 0.35 7 0 7 0 0 0 0
.................................CCTCGAGGTGAAAGTCACACTCATCAT....................................................................................................................................... 27 0 20 0.35 7 0 7 0 0 0 0
...................................................ACTCATCATTTTACAGACGTAAACGT...................................................................................................................... 26 0 9 0.33 3 0 3 0 0 0 0
...........GGGCCGCTTGTGTAGACGTCAT.................................................................................................................................................................. 22 0 13 0.31 4 0 4 0 0 0 0
AAGCTCGTCCCGGGCCGCTTGTGTAGACGT..................................................................................................................................................................... 30 1 13 0.31 4 4 0 0 0 0 0
........................................................................................................................................................................AACCTGAACCCATTCACCGACAAT... 24 0 20 0.30 6 0 6 0 0 0 0
..........................................GAAAGTCACACTCATCATTTTACAGA............................................................................................................................... 26 0 14 0.29 4 0 4 0 0 0 0
...........................................................................GTACCGTCATCAGCACCCACGAGGTT.............................................................................................. 26 0 16 0.25 4 0 4 0 0 0 0
........CCCGGGCCGCTGGTGTAGACGTCAT.................................................................................................................................................................. 25 1 12 0.25 3 3 0 0 0 0 0
........................................................................................................................................................CCTCGATCTCTACTTTAACCTGAACC................. 26 0 8 0.25 2 0 2 0 0 0 0
.........................................................................................................................................................CTCGATCTCTACTTTAACCTGAACCCAT.............. 28 0 8 0.25 2 0 2 0 0 0 0
......GTCCCGGGCCGCTTGTGTAGAC....................................................................................................................................................................... 22 0 13 0.23 3 0 3 0 0 0 0
........CCCGGGCCGCTTGTGTAGACGTCA................................................................................................................................................................... 24 0 13 0.23 3 0 3 0 0 0 0
...........................................AAAGTCACACTCATCATTTTACAGA............................................................................................................................... 25 0 14 0.21 3 0 3 0 0 0 0
............................GTCATCCTCGAGGTGAAAGTCACAC.............................................................................................................................................. 25 0 20 0.20 4 0 4 0 0 0 0
..............................CATCCTCGAGGTGAAAGTCACACTCAT.......................................................................................................................................... 27 0 20 0.20 4 0 4 0 0 0 0
..............................................................................................................................................GTCCAGTTGTCCTCGATCTCTACT............................. 24 0 10 0.20 2 0 2 0 0 0 0
....................................CGAGGTGAAAGTCACACTCATCATTT..................................................................................................................................... 26 0 20 0.20 4 0 4 0 0 0 0
........CCCGGGCCGCTTGTGTAGACGTCGTCCT............................................................................................................................................................... 28 1 20 0.20 4 4 0 0 0 0 0
........CCCGGGCCGCTTGTGTAGACGTCATCC................................................................................................................................................................ 27 0 11 0.18 2 0 2 0 0 0 0
................................................CACACTCATCATTTTACAGACGTAA.......................................................................................................................... 25 0 12 0.17 2 0 2 0 0 0 0
.....CGTCCCGGGCCGCTGGTGTAGACGTCAT.................................................................................................................................................................. 28 1 12 0.17 2 2 0 0 0 0 0
....................................................................................TCAGCACCCACGAGGTTAAAATCACAC.................................................................................... 27 0 12 0.17 2 0 2 0 0 0 0
...............CGCTTGTGTAGACGTCATCCTCGAGG.......................................................................................................................................................... 26 0 13 0.15 2 0 2 0 0 0 0
........CCCGGGCCGCTTGTGTAGACGT..................................................................................................................................................................... 22 0 13 0.15 2 0 2 0 0 0 0
..........CGGGCCGCGTGTGTAGACGTCATCCT............................................................................................................................................................... 26 1 13 0.15 2 2 0 0 0 0 0
.AGCTCGTCCCGGGCCGCTTGTGT........................................................................................................................................................................... 23 0 13 0.15 2 1 1 0 0 0 0
.......TCCCGGGCCGCTTGTGTAGACGT..................................................................................................................................................................... 23 0 13 0.15 2 0 2 0 0 0 0
........CGCGGGCCGCTTGTGTAGACGTCAT.................................................................................................................................................................. 25 1 13 0.15 2 2 0 0 0 0 0
......GTCCCGGGCCGCTTGTGTAGACG...................................................................................................................................................................... 23 0 13 0.15 2 0 2 0 0 0 0
................................................................................................................................................CCAGTTGTCCTCGATCTCTACT............................. 22 0 13 0.15 2 0 2 0 0 0 0
.............................................AGTCACACTCATCATTTTACAGACGT............................................................................................................................ 26 0 13 0.15 2 0 2 0 0 0 0
........................AGACGTCATCCTCGAGGTGAAAGT................................................................................................................................................... 24 0 20 0.15 3 1 2 0 0 0 0
..............................CATCCTCGAGGTGAAAGTCACAC.............................................................................................................................................. 23 0 20 0.15 3 0 3 0 0 0 0
....................................CGAGGTGAAAGTCACACTCATCAT....................................................................................................................................... 24 0 20 0.15 3 0 3 0 0 0 0
............................................AAGTCACACTCATCATTTTACAGA............................................................................................................................... 24 0 14 0.14 2 0 2 0 0 0 0
...........................................................................................................................................................AGATCTCTACTTTAACCTGAACCCATT............. 27 1 7 0.14 1 0 1 0 0 0 0
..........................................................................................................................................................CCGATCTCTACTTTAACCTGAACCCATT............. 28 1 7 0.14 1 0 1 0 0 0 0
.............................................AGTCACACTCATCATTTTACAGA............................................................................................................................... 23 0 14 0.14 2 0 2 0 0 0 0
...............................................................................................................................................................CTCTACTTTAACCTGAACCCATTCAC.......... 26 0 7 0.14 1 0 1 0 0 0 0
..............................................................................................................................................................TCTCTACTTTAACCTGAACCCATTC............ 25 0 7 0.14 1 0 1 0 0 0 0
..............................................................................................................................................................TCTCTACTTTAACCAGAACCCATTCA........... 26 1 7 0.14 1 0 1 0 0 0 0
................................................................................GTCATCAGCACCCACGAGGTTAAAAT......................................................................................... 26 0 15 0.13 2 0 2 0 0 0 0
...............................................................................CGTCATCAGCACCCACGAGGTTAAAAT......................................................................................... 27 0 15 0.13 2 0 1 1 0 0 0
..............................................................................CCGTCATCAGCACCCACGAGGTTAAAAT......................................................................................... 28 0 15 0.13 2 0 2 0 0 0 0
........CCGGGGCCGCTTGTGT........................................................................................................................................................................... 16 1 15 0.13 2 2 0 0 0 0 0
........................................................................................................................................................CCTCGATCTCTACTTTAACCTGAACCCAT.............. 29 0 8 0.13 1 0 1 0 0 0 0
........................................................................................................................................................CCTCGATCTCTACTTTAACATGAA................... 24 1 8 0.13 1 0 1 0 0 0 0
..........................................................................................................................................................TCGATCTCTACTTTAACCTGAACCCAT.............. 27 0 8 0.13 1 0 1 0 0 0 0
...........................................................................................................................................................AGATCTCTCCTTTAACCTGCACCCAT.............. 26 3 8 0.13 1 0 1 0 0 0 0
............................................................................................................................................................GATCTCTACTTTAACCTGAACCCAT.............. 25 0 8 0.13 1 0 1 0 0 0 0
................................................................................................................................................CCAGTTGTCCTCGATCTCTACTTTAA......................... 26 0 8 0.13 1 0 1 0 0 0 0
.............................................................................................................................................................ATCTCTACTTTAACCTGAACCCAT.............. 24 0 8 0.13 1 0 1 0 0 0 0
...................................................................................................................................................GTTGTCCTCGATCTCTACTTTAACCT...................... 26 0 8 0.13 1 0 1 0 0 0 0
..........................................................................................................................................................TCGATCTCTACTTTAACCTGAACT................. 24 1 8 0.13 1 0 1 0 0 0 0
.........................................................................................................................................................CTCGATCTCTACTTTAACCTGAAC.................. 24 0 8 0.13 1 0 1 0 0 0 0
........................................................................................................................................................CCTCGATCTCTACTTTAACCTGAAC.................. 25 0 8 0.13 1 0 1 0 0 0 0
........CCCGGGCCGCTCGTGTAGACGTCAT.................................................................................................................................................................. 25 1 17 0.12 2 2 0 0 0 0 0
.........CCGGGCCGCTCGTGTAGACGTCAT.................................................................................................................................................................. 24 1 17 0.12 2 2 0 0 0 0 0
...........................................................................GTACCGTCATCAGCACCCACGAGGT............................................................................................... 25 0 17 0.12 2 0 2 0 0 0 0
......................................................................................................................................................GTCCTCGATCTTTACTTTAACCT...................... 23 1 9 0.11 1 0 1 0 0 0 0
.....................................................................................................................................................TGTCCTCGATCTCTACTTTAACCT...................... 24 0 9 0.11 1 0 1 0 0 0 0
....................................................................................................................................................TTGTCCTCGATCTCTACTTTAACCT...................... 25 0 9 0.11 1 0 1 0 0 0 0
.....................................................TCATCATTTTACAGACGTAAACGTAC.................................................................................................................... 26 0 9 0.11 1 0 1 0 0 0 0
...................................................ACTCATCATTTTACAGACCTAAACGT...................................................................................................................... 26 1 9 0.11 1 0 1 0 0 0 0
................................................CACACTCATCATTTTACAGACGTAAAC........................................................................................................................ 27 0 9 0.11 1 0 1 0 0 0 0
...........................................................................................CCACGAGGTTAAAATCACATTAATAA.............................................................................. 26 1 9 0.11 1 0 1 0 0 0 0
........................AGACGTCATCCTCGAGGTGAAAGTCA................................................................................................................................................. 26 0 20 0.10 2 0 2 0 0 0 0
..............................CATCCTCGAGGTGAAAGTCACACT............................................................................................................................................. 24 0 20 0.10 2 0 2 0 0 0 0
....................................CGAGGTGAAAGTCACACTCATCATT...................................................................................................................................... 25 0 20 0.10 2 0 2 0 0 0 0
......................................................................................................................................................................TTAACCTGAACCCATTCACCGACAA.... 25 0 10 0.10 1 0 1 0 0 0 0
.................................................................AGACGTAAACGTACCGTCATCAGCAC........................................................................................................ 26 0 10 0.10 1 0 1 0 0 0 0
........................................................................................................................................................................AACCTGAACCCATTCACCGACAA.... 23 0 20 0.10 2 0 2 0 0 0 0
...........................CGTCATCCTCGAGGTGAAAGTCACA............................................................................................................................................... 25 0 20 0.10 2 0 2 0 0 0 0
.........CCGTGCCGCTTGTGTAGACGTCATCCT............................................................................................................................................................... 27 1 11 0.09 1 0 1 0 0 0 0
.......................................................................AAACGTACCGTCATCAGCACCCACGAGGT............................................................................................... 29 0 11 0.09 1 0 1 0 0 0 0
.....CGTACCGGGCCGCTTGTGTAGACGTCAT.................................................................................................................................................................. 28 1 11 0.09 1 1 0 0 0 0 0
.......TCCCGGGCCTCTTGTGTAGACGTCAT.................................................................................................................................................................. 26 1 11 0.09 1 1 0 0 0 0 0
.......TCCCAGGCCGCTTGTGTAGACGTCAT.................................................................................................................................................................. 26 1 11 0.09 1 1 0 0 0 0 0
.......TCCCGGGACGCTTGTGTAGACGTCAT.................................................................................................................................................................. 26 1 11 0.09 1 1 0 0 0 0 0
........CCCGGGCCGCTTGTGTAGCCGTCAT.................................................................................................................................................................. 25 1 11 0.09 1 0 1 0 0 0 0
.........CCGGGCCGCTTGTGTAGACGTCATC................................................................................................................................................................. 25 0 11 0.09 1 0 1 0 0 0 0
.........CCGGGCCGCTTGTGTAGGCGTCAT.................................................................................................................................................................. 24 1 11 0.09 1 0 0 1 0 0 0
........CCCGTGCCGCTTGTGTAGACGTCAT.................................................................................................................................................................. 25 1 11 0.09 1 0 1 0 0 0 0
.....CGTCCCGGGCCGCTTGTGTAGAAGTCAT.................................................................................................................................................................. 28 1 11 0.09 1 1 0 0 0 0 0
........CCCGGGCCGCTTGTGTAGACGTCATC................................................................................................................................................................. 26 0 11 0.09 1 0 1 0 0 0 0
........CCCGGGCCGCTTGTGTACACGTCAT.................................................................................................................................................................. 25 1 11 0.09 1 1 0 0 0 0 0
.....CGTCCCGGGCTGCTTGTGTAGACGTCAT.................................................................................................................................................................. 28 1 11 0.09 1 1 0 0 0 0 0
.........CCGGGCCGCTTGTGTAGACGTCATACT............................................................................................................................................................... 27 1 11 0.09 1 0 0 1 0 0 0
........GCCGGGCCGCTTGTGTAGACGTCAT.................................................................................................................................................................. 25 1 11 0.09 1 0 0 1 0 0 0
.......TCCCGGGCCGCTGGTGTAGACGTCAT.................................................................................................................................................................. 26 1 12 0.08 1 1 0 0 0 0 0
TAGCTCGTCCCGGGCCGCTTGTGT........................................................................................................................................................................... 24 0 12 0.08 1 0 1 0 0 0 0
......................................................................................AGCACCCACGAGGTTAAAATCAAACT................................................................................... 26 1 12 0.08 1 0 1 0 0 0 0
......GTCCCGGGCCGCTGGTGTAGACGTCAT.................................................................................................................................................................. 27 1 12 0.08 1 1 0 0 0 0 0
......................................................................................AGCACCCACGAGGTTAAAATCACACT................................................................................... 26 0 12 0.08 1 0 1 0 0 0 0
.......TCCCGGGCCTTTTGTGTAGACGT..................................................................................................................................................................... 23 2 13 0.08 1 0 1 0 0 0 0
........CCCGGGCCGCTTGTGTCGAC....................................................................................................................................................................... 20 1 13 0.08 1 0 1 0 0 0 0
...........GGGCCGCTTGAGTAGACGTCATCCTCG............................................................................................................................................................. 27 1 13 0.08 1 1 0 0 0 0 0
..GCTCGTCCCGGGCCGCTTGTGT........................................................................................................................................................................... 22 0 13 0.08 1 0 1 0 0 0 0
...........GGGCCGCTTGTGTTGACGTCATCCTCG............................................................................................................................................................. 27 1 13 0.08 1 1 0 0 0 0 0
..........CGGGCCGCTTGTGTAGACGTCATCC................................................................................................................................................................ 25 0 13 0.08 1 0 1 0 0 0 0
.........CCGGGCCGCTTGTGTAGACGTCC................................................................................................................................................................... 23 1 13 0.08 1 0 1 0 0 0 0
...........GGGCCGCTTGTGTAGACGTCATC................................................................................................................................................................. 23 0 13 0.08 1 0 1 0 0 0 0
..........................................GAAAGTCACACTCATCATTTTACAGACGT............................................................................................................................ 29 0 13 0.08 1 0 1 0 0 0 0
........ACCGGGCCGCTTGTGTAGACGTCA................................................................................................................................................................... 24 1 13 0.08 1 0 1 0 0 0 0
........TACGGGCCGCTTGTGTAGACGTCAT.................................................................................................................................................................. 25 2 13 0.08 1 1 0 0 0 0 0
...........GGGCCGCTTGTGTCGACGTCATCCTCG............................................................................................................................................................. 27 1 13 0.08 1 1 0 0 0 0 0
..........GGGGCCGCTTGTGTAGACGTCAT.................................................................................................................................................................. 23 1 13 0.08 1 0 1 0 0 0 0
.......TCCCGGGCCGCTTGTGTAGACGTC.................................................................................................................................................................... 24 0 13 0.08 1 0 1 0 0 0 0
..GCTCGTCCCGGGCCGCTTGTGTAG......................................................................................................................................................................... 24 0 13 0.08 1 0 1 0 0 0 0
............TGCCGCTTGTGTAGACGTCAT.................................................................................................................................................................. 21 1 13 0.08 1 0 1 0 0 0 0
...........GGGCCGCTTGTGTAGCCGTCATCCTCG............................................................................................................................................................. 27 1 13 0.08 1 1 0 0 0 0 0
....TCGTCCCGTGCCGCTTGTGTAGACGT..................................................................................................................................................................... 26 1 13 0.08 1 0 1 0 0 0 0
.................CTTGTGTAGACGTCATCCTCGAGGT......................................................................................................................................................... 25 0 13 0.08 1 0 1 0 0 0 0
...................TGTGTAGACGTCATCCTCGAGGT......................................................................................................................................................... 23 0 13 0.08 1 0 1 0 0 0 0
...........GGGCCGCTTGTGTAGACGTCATCC................................................................................................................................................................ 24 0 13 0.08 1 0 1 0 0 0 0
....TCGTCCCGGGCCGCTTGTGTAGACGT..................................................................................................................................................................... 26 0 13 0.08 1 0 1 0 0 0 0
.......TCCCGGGACGCTTGTGTAG......................................................................................................................................................................... 19 1 13 0.08 1 1 0 0 0 0 0
...............CGCTTGTGTAGACGTCATACTCGAGGT......................................................................................................................................................... 27 1 13 0.08 1 0 1 0 0 0 0
...........GGGCCGCTTGTGTAGACCTCATCCT............................................................................................................................................................... 25 1 13 0.08 1 1 0 0 0 0 0
......................GTAGACGTCATCCTCGTGGTGAAAGTCA................................................................................................................................................. 28 1 13 0.08 1 0 1 0 0 0 0
........CCCGGGCCGCTTGTGTAGACGTCAA.................................................................................................................................................................. 25 1 13 0.08 1 1 0 0 0 0 0
...............CGCTTGTGTAGACGTCATCCT............................................................................................................................................................... 21 0 13 0.08 1 0 0 0 0 1 0
.........AAGGGCCGCTTGTGTAGACGTCAT.................................................................................................................................................................. 24 2 13 0.08 1 1 0 0 0 0 0
...........................................AAAGTCACACTCATCATTTTACAGACGT............................................................................................................................ 28 0 13 0.08 1 0 1 0 0 0 0
.........CCGGGCCGCTTGTGTAGAC....................................................................................................................................................................... 19 0 13 0.08 1 0 1 0 0 0 0
................................................CACACTCATCATTTTACAGACGT............................................................................................................................ 23 0 13 0.08 1 0 0 1 0 0 0
...............CGCTTGTGTAGACGTCATCCTCGAGGTG........................................................................................................................................................ 28 0 13 0.08 1 0 1 0 0 0 0
.AGCTCGTCCCGGGCCGCTTGTGTAG......................................................................................................................................................................... 25 0 13 0.08 1 0 1 0 0 0 0
..........CGGGCCGCTTGTGTAGACTTCATCCT............................................................................................................................................................... 26 1 13 0.08 1 1 0 0 0 0 0
..........................................GAAAGTCACACTCATCATTTTACAGAC.............................................................................................................................. 27 0 14 0.07 1 0 1 0 0 0 0
..........................................GAAAGTCACACTCATCATTTTAC.................................................................................................................................. 23 0 14 0.07 1 0 1 0 0 0 0
......GTCCCGGGCCGCTTTTGTAGACGT..................................................................................................................................................................... 24 1 14 0.07 1 0 1 0 0 0 0
...........................................AAAGTCACACTCATCATTTTACAG................................................................................................................................ 24 0 14 0.07 1 0 1 0 0 0 0
...........................................TAAGTCACACTCATCATTTTACAGA............................................................................................................................... 25 1 14 0.07 1 0 1 0 0 0 0
..............................................GTCACACTCATCATTTTACAGACG............................................................................................................................. 24 0 14 0.07 1 0 1 0 0 0 0
..........................................GAAAGTCACACTCATCATTTTACAG................................................................................................................................ 25 0 14 0.07 1 0 1 0 0 0 0
..........CGGGTCGCTTGTGTAGACGTCATCCT............................................................................................................................................................... 26 1 14 0.07 1 1 0 0 0 0 0
..........................................TAAAGTCACACTCATCATTTTACAGA............................................................................................................................... 26 1 14 0.07 1 0 1 0 0 0 0
...........................................AAAGTCACACTCATCATTTTACAGACG............................................................................................................................. 27 0 14 0.07 1 0 1 0 0 0 0
..........CGGGCCGCTTGTGTAGACGTCA................................................................................................................................................................... 22 0 15 0.07 1 0 1 0 0 0 0
...CTCGTCGCGGGCCGCTTGTGTAG......................................................................................................................................................................... 23 1 15 0.07 1 1 0 0 0 0 0
...............................................................................CGTCATCAGCACCCACGAGGTTAAAA.......................................................................................... 26 0 15 0.07 1 0 1 0 0 0 0
.........................................................................................................................................TAAAAGTCCAGTTGTCCTCGATCTCTAC.............................. 28 0 15 0.07 1 0 1 0 0 0 0
..................................................................................CATCAGCACCCACGAGGTTAAAA.......................................................................................... 23 0 15 0.07 1 0 1 0 0 0 0
..............................................................................................................................................GTCCAGTTGTCCTCGATCTCTACCT............................ 25 1 15 0.07 1 0 1 0 0 0 0
.................................................................................TCATCAGCACCCACGAGGTTAAAAT......................................................................................... 25 0 15 0.07 1 0 1 0 0 0 0
.......................................................................................GCACCCACGAGGTTAAAATCACACT................................................................................... 25 0 16 0.06 1 0 1 0 0 0 0
........................................................................................................................................ATAAAAGTCCAGTTGTCCTCGATCTCT................................ 27 0 16 0.06 1 0 1 0 0 0 0
.............................................................................ACCGTCATCAGCACCCACGAGGTTAA............................................................................................ 26 0 16 0.06 1 0 1 0 0 0 0
.............................................................................................................................................AGTCCAGTTGTCCTCGATCTCT................................ 22 0 16 0.06 1 0 1 0 0 0 0
......................GTAGACGTCATCCTCGAGGTGA....................................................................................................................................................... 22 0 17 0.06 1 1 0 0 0 0 0
......................GTAGACGTCATCGTCGAGGTGAAAGT................................................................................................................................................... 26 1 17 0.06 1 1 0 0 0 0 0
........CCCGGGCCGCTCGTGTAGACGTCATCC................................................................................................................................................................ 27 1 17 0.06 1 0 1 0 0 0 0
.....................TGTAGACGTCATCCTCGAGGTGAAAGT................................................................................................................................................... 27 0 17 0.06 1 1 0 0 0 0 0
......................GTAGAAGTCATCCTAGAGGTGAAAGT................................................................................................................................................... 26 2 17 0.06 1 1 0 0 0 0 0
......................GTAGACGTGATCCTCGAGGTGA....................................................................................................................................................... 22 1 17 0.06 1 1 0 0 0 0 0
....................................................................................TCAGCACCCACGAGGTTAAAAT......................................................................................... 22 0 17 0.06 1 0 1 0 0 0 0
......................GTAGACGTCATCCTCGAGGTGAAA..................................................................................................................................................... 24 0 17 0.06 1 0 1 0 0 0 0
..................................................................................CATCAGCACCCACGAGGTT.............................................................................................. 19 0 17 0.06 1 0 0 1 0 0 0
......................GTAGAAGTCATCCTCGAGGTGAAAGT................................................................................................................................................... 26 1 17 0.06 1 1 0 0 0 0 0
........CCCGGGCCGCTCGTGTAGACGTAATCCT............................................................................................................................................................... 28 2 17 0.06 1 1 0 0 0 0 0
........CCCGGGCCGCTCGTGTAGCCGTCATCCT............................................................................................................................................................... 28 2 17 0.06 1 1 0 0 0 0 0
.....................TGTAGACGTCATCGTCGAGGTGAAAGT................................................................................................................................................... 27 1 17 0.06 1 1 0 0 0 0 0
.................................................................................ACATCAGCACCCACGAGGTT.............................................................................................. 20 1 17 0.06 1 0 1 0 0 0 0
.......TCCCGGGCCGCTCGTGTAGACGTCAT.................................................................................................................................................................. 26 1 17 0.06 1 1 0 0 0 0 0
......................GTAGACGTCATCCTCGAGGTG........................................................................................................................................................ 21 0 17 0.06 1 0 1 0 0 0 0
.......................................................................................GCACCCACGAGGTTACAATCACAC.................................................................................... 24 1 18 0.06 1 0 1 0 0 0 0
..............................................................................CCGTCATCAGCACCCACGAGGT............................................................................................... 22 0 18 0.06 1 0 1 0 0 0 0
....................................................................................TCAGCACCCACGAGGTTA............................................................................................. 18 0 18 0.06 1 0 1 0 0 0 0
............GGCCGCTTGTTTAGACGTCATCCTC.............................................................................................................................................................. 25 1 19 0.05 1 0 1 0 0 0 0
..........CGGGCCGCTTGTTTAGACGTCATCCT............................................................................................................................................................... 26 1 19 0.05 1 1 0 0 0 0 0
........................................................................................CACCCACGAGGTTAAAATCACCCT................................................................................... 24 1 20 0.05 1 0 0 1 0 0 0
........................................................................................................................................................................AAATTTAACCCATTCACCGACAA.... 23 3 20 0.05 1 0 1 0 0 0 0
.............................................................................................................................GATAAAAAGAAATAAAAGTCCAGT.............................................. 24 1 20 0.05 1 0 1 0 0 0 0
..............................................................................................................................................GTCCAGTTGTCCTCGATCTCT................................ 21 0 20 0.05 1 0 1 0 0 0 0
...............................................................................................................................................TCCAGTTGTCCTCGATCTCT................................ 20 0 20 0.05 1 0 1 0 0 0 0
.................................CCTCGATGTGAAAGTCACACTCATCAT....................................................................................................................................... 27 1 20 0.05 1 0 1 0 0 0 0
.....................................GAGGTGAAAGTCACACTCATCAT....................................................................................................................................... 23 0 20 0.05 1 0 1 0 0 0 0
...........................CATCATCCTCGAGGTGAAAGTCACAC.............................................................................................................................................. 26 1 20 0.05 1 0 1 0 0 0 0
.................................CCTCGAGGTGCAAGTCACACTCATCAT....................................................................................................................................... 27 1 20 0.05 1 1 0 0 0 0 0
.......TCCCGGGCCGCTTGTGTAGACGTCGT.................................................................................................................................................................. 26 1 20 0.05 1 1 0 0 0 0 0
.........................AACGTCATCCTCGAGGTGAAAGTCA................................................................................................................................................. 25 1 20 0.05 1 0 1 0 0 0 0
................................................................................................................................AAAAAGAAATAAAAGTCCAGTTGTCCT........................................ 27 0 20 0.05 1 0 1 0 0 0 0
....................................................................................................................................AGAAATAAAAGTCCAGTTGTCCTCGAT.................................... 27 0 20 0.05 1 0 1 0 0 0 0
...................................................................................................................................AAAAAATAAAAGTCCAGTTGTCCT........................................ 24 1 20 0.05 1 0 1 0 0 0 0
.................................CCTCGAGGTGGAAGTCACACTCAT.......................................................................................................................................... 24 1 20 0.05 1 1 0 0 0 0 0
...............................ATCCTCGAGGTGAAAGTCACACTCAT.......................................................................................................................................... 26 0 20 0.05 1 0 1 0 0 0 0
..............................................................................................................................ATAAAAAGAAATAAAAGTCCAGTTGTCC......................................... 28 0 20 0.05 1 0 1 0 0 0 0
.............................................................................................................................TATAAAAAGAAATAAAAGTCCAGTC............................................. 25 1 20 0.05 1 0 1 0 0 0 0
....................................................................................................................................AGAAATAAAAGTCCAGTTGTCCTCGATC................................... 28 0 20 0.05 1 0 1 0 0 0 0
.......................................................................................................................................................................TAACCTGAACCCATTTACCGACAAT... 25 1 20 0.05 1 0 1 0 0 0 0
.............................................................................................................................TATAAAAAGAAATAAAAGTCCAG............................................... 23 0 20 0.05 1 0 1 0 0 0 0
...........................CGTCATCCTCGAGGTGAAAGTCA................................................................................................................................................. 23 0 20 0.05 1 0 0 0 1 0 0
........TCCGGGCCGCTTGTGTAGACGTCGT.................................................................................................................................................................. 25 2 20 0.05 1 1 0 0 0 0 0
.....................................................................................................................................GAAATAAAAGTCCAGTTGTCCTCGATCT.................................. 28 0 20 0.05 1 0 1 0 0 0 0
............................................................................................................................TTATAAAAAGAAATAAAAGTCCAG............................................... 24 0 20 0.05 1 0 1 0 0 0 0
................................................................................................................................................CCAGTTGTCCTCGATCTCT................................ 19 0 20 0.05 1 0 1 0 0 0 0
..............................CATCCTCGAGGTGAAAGTCACACTCA........................................................................................................................................... 26 0 20 0.05 1 0 1 0 0 0 0
.............................TCATCCTCGATGTGAAAGTCACAC.............................................................................................................................................. 24 1 20 0.05 1 0 1 0 0 0 0
............................GTCATCCTCGAGGTGAAAGTCA................................................................................................................................................. 22 0 20 0.05 1 0 1 0 0 0 0
.............................TCATCCTCGAGGTGAAAGTCA................................................................................................................................................. 21 0 20 0.05 1 0 1 0 0 0 0
..............................CATCCTCGAGGTGAAAGTCACACTC............................................................................................................................................ 25 0 20 0.05 1 0 1 0 0 0 0
............................GTCATCCTCGAGGTGAAAGTCACACT............................................................................................................................................. 26 0 20 0.05 1 0 1 0 0 0 0
..............................................................................................................................ATAAAAAGAAATAAAAGTCCAGTTG............................................ 25 0 20 0.05 1 0 1 0 0 0 0
...........................CGACATCCTCGAGGTGAAAGTCA................................................................................................................................................. 23 1 20 0.05 1 0 1 0 0 0 0
........................................................................................................................................................................AACCTCAACCCATTCACCGACAAT... 24 1 20 0.05 1 0 1 0 0 0 0
.....................................................................................................................................GAAATAAAAGTCCAGTTGTCCTCGAT.................................... 26 0 20 0.05 1 0 1 0 0 0 0
.........................GACGTCATCCTCGAGGTGAAAGT................................................................................................................................................... 23 0 20 0.05 1 0 1 0 0 0 0
.............................................................................................................................TATAAAAAGAAATAAAAGTCCAGTTGT........................................... 27 0 20 0.05 1 0 1 0 0 0 0
.......................................................................................................................................................................TAACCTGAACCCATTCACCGACAAT... 25 0 20 0.05 1 0 1 0 0 0 0
..................................CTCGAGGTGAAAGTCACACTCATCATT...................................................................................................................................... 27 0 20 0.05 1 0 1 0 0 0 0
....................................CGAGGTGACAGTCACACTCATCATTT..................................................................................................................................... 26 1 20 0.05 1 1 0 0 0 0 0
..............................CATCCTCGAGGTGAAAGTCA................................................................................................................................................. 20 0 20 0.05 1 0 1 0 0 0 0
..........CGGGCCGCTTGTGTAGACGTCGT.................................................................................................................................................................. 23 1 20 0.05 1 1 0 0 0 0 0
...........................CGCCATCATCGAGGTCAAA..................................................................................................................................................... 19 3 20 0.05 1 0 0 0 0 0 1
.................................CCTCGAGGTGAAAGTCACACTCATCA........................................................................................................................................ 26 0 20 0.05 1 0 1 0 0 0 0

Re-alignment of all predicted orthologs

Species Coordinate ID Alignment
droEre2 scaffold_3522:8948-9142 + der_288 ATCGAGCAGGGCCCGGCGAACACATCTGCAGTAGGAGCTCCACTTTCAGTGTGAGTAGTAAAATGTCTGCATTTGCATGGCAGTAGTCGTGGGTGCTCCAATTTTAGTGTGATTATTTTAATTTAATATTTTTCTTTATTTTCAGGTCAACAGGAGCTAGAGATGAAATTGGACTTGGGTAAGTGGCTGTTATTT

Re-alignment of all predicted orthologs with sRNA reads

Species Read alignment
droEre2
ATCGAGCAGGGCCCGGCGAACACATCTGCAGTAGGAGCTCCACTTTCAGTGTGAGTAGTAAAATGTCTGCATTTGCATGGCAGTAGTCGTGGGTGCTCCAATTTTAGTGTGATTATTTTAATTTAATATTTTTCTTTATTTTCAGGTCAACAGGAGCTAGAGATGAAATTGGACTTGGGTAAGTGGCTGTTATTTSizeHit CountTotal NormTotalM055
Female-body		M057
Embryo		V060
Head		V040
Embryo		V107
Male-body		V108
Head		GSM1528801
follicle cells
............CCGGCGAACACATCTGCAGTAGGAGC.............................................................................................................................................................26131.231600000016
...................................................................................................................................TTCTTTATTTTCAGGTCAACAGGAG.......................................25200.60126000006
................................................................................................TCCAATTTTAGTGTGATTATTTTAATT........................................................................2720.5011000000
...................................................TGAGTAGTAAAATGTCTGCATTTGC.......................................................................................................................2590.3333000000
............CCGGCGAACACATCTGCAGTAGGAG..............................................................................................................................................................25130.3140000004
.........................................................................................................................TTTAATATTTTTCTTTATTTTCAGG.................................................25200.3066000000
...................................................................TGCATTTGCATGGCAGTAGTCGTGGG......................................................................................................26100.3033000000
.......................ATCTGCAGTAGGAGCTCCACTTT.....................................................................................................................................................23200.3066000000
...........................................TTTCAGTGTGAGTAGTAAAATGTC................................................................................................................................24140.2944000000
..........................................................TAAAATGTCTGCATTTGCATGGCA.................................................................................................................2490.2222000000
.............................................................................................................................................TCAGGTCAACAGGAGCTAGAGATGA.............................25100.2022000000
...................................................................................................................................TTCTTTATTTTCAGGTCAACAGGA........................................24200.2040000004
...................................................................TGCATTTGCATGGCAGTAGTCGTG........................................................................................................24100.2022000000
..........................................................................................................................................TTTTCAGGTCAACAGGAGCTAGAGA................................25160.1933000000
.......................ATCTGCAGTAGGAGCTCCACTTTCAG..................................................................................................................................................26200.1533000000
...................................................................................................................................TTCTTTATTTTCAGGTCAACAGGAGC......................................26200.1533000000
.................................................................................................................................................................GATGAAATTGGACTTGGGTAAGTGG.........2570.1410000100
.........................................................................................................................................ATTTTCAGGTCAACAGGAGCTAGAGA................................26160.1322000000
..................................................................................................................................................TCAACAGGAGCTAGAGATGAAA...........................2280.1311000000
......................................................................................................................................................CAGGAGCTAGAGATGAAATTGGACTTG..................2780.1311000000
..................................................................................................................................................TCAACAGGAGCTAGAGATGAAATTGGAC.....................2880.1311000000
..................................................................................................................................................TCAACAGGAGCTAGAGATGAAATTGG.......................2680.1311000000
....................CACATCTGCAGTAGGAGCTCCACTT......................................................................................................................................................25160.1322000000
....................CACATCTGCAGTAGGAGCTCCACT.......................................................................................................................................................24160.1322000000
..................................................................................................................................................TCAACAGGAGCTAGAGATGAAATTG........................2580.1311000000
...................................................................................................................................................................TGAAATTGGACTTGGGTAAGTGGCTGT.....2790.1111000000
....................................................................................................................................................AACAGGAGCTAGAGATGAAATTG........................2390.1111000000
..................................................................................................................................................TCAACAGGAGCTAGAGATGAA............................2190.1111000000
......................................................................................................................................................CAGGAGCTAGAGATGAAATTGGAC.....................2490.1111000000
...................................................................................................................................................................TGAAATTGGACTTGGGTAAGTGGCTG......2690.1111000000
..........................................................TAAAATGTCTGCATTTGCATGGC..................................................................................................................2390.1111000000
.....................................................................................................................................................ACAGGAGCTAGAGATGAAATTGGACT....................2690.1111000000
..................................................GTGAGTAGTAAAATGTCTGCATTTGCA......................................................................................................................2790.1111000000
..............................................................................................................................................................AGAGATGAAATTGGACTTGGACT..............2390.1111000000
...........................................................AAAATGTCTGCATTTGCATGGCA.................................................................................................................2390.1111000000
...................................................................TGCATTTGCATGGCAGTAGTCGTGG.......................................................................................................25100.1011000000
........................TCTGCAGTAGGAGCTCCACTTTCAGTG................................................................................................................................................27200.1022000000
.................................................................TCTGCATTTGCATGGCAGTAGTCGTGG.......................................................................................................27100.1011000000
.................................................................TCTGCATTTGCATGGCAGTAGTCGTG........................................................................................................26100.1011000000
.......................ATCTGCAGTAGGAGCTCCACT.......................................................................................................................................................21200.1022000000
........................TCTGCAGTAGGAGCTCCACTTTCAG..................................................................................................................................................25200.1022000000
..........................TGCAGTAGGAGCTCCACTTTCAGT.................................................................................................................................................24200.1022000000
.......................ATCTGCAGTAGGAGCTCCACTTTCAGTG................................................................................................................................................28200.1022000000
.......................................................................TTTGCATGGCAGTAGTCGTGGG......................................................................................................22110.0911000000
ATCGAGCAGGGCCCGGCGAACACATC.........................................................................................................................................................................26120.0811000000
...............................................AGTGTGAGTAGTAAAATGTCTGCATT..........................................................................................................................26120.0811000000
...............................................AGTGTGAGTAGTAAAATGTCTGCAT...........................................................................................................................25120.0811000000
........................................CACTTTCAGTGTGAGTAGTAAAATGTC................................................................................................................................27120.0811000000
ATCGAGCAGGGCCCGGCGAACAC............................................................................................................................................................................23120.0811000000
........................................CACTTTCAGTGTGAGTAGTAAAATG..................................................................................................................................25120.0811000000
...GAGCAGGGCCCGGCGAACACATCTGCAC....................................................................................................................................................................28130.0811000000
....AGCAGGGCCCGGCGAACAC............................................................................................................................................................................19130.0810001000
.TCGAGCAGGGCCCGGCGAACACATC.........................................................................................................................................................................25130.0811000000
.TCGAGCAGGGCCCGGCGAACACAT..........................................................................................................................................................................24130.0811000000
...........................................TTTCAGTGTGAGTAGTAAAATGTCTGCA............................................................................................................................28130.0811000000
...............GCGAACACATCTGCAGTAGGAGCTCC..........................................................................................................................................................26130.0811000000
......................CATCTGCAGTAGGAGCTCCACTTTCAG..................................................................................................................................................27130.0811000000
.................GAACACATCTGCAGTAGGAGCTCCAAA.......................................................................................................................................................27130.0811000000
...........CCCGGCGAACACATCTGCAGTAGGAG..............................................................................................................................................................26130.0811000000
.............................................TCAGTGTGAGTAGTAAAATGTCTGCA............................................................................................................................26130.0811000000
..............GGCGAACACATCTGCAGTAGGAG..............................................................................................................................................................23130.0811000000
..................................................................................................................................................TCAACAGGAGCTAGAGATGA.............................20140.0711000000
...........................................TTTCAGTGTGAGTAGTAAAATGTCT...............................................................................................................................25140.0711000000
..........................................CTTTCAGTGTGAGTAGTAAAATGT.................................................................................................................................24140.0711000000
..........................................CTTTCAGTGTGAGTAGTAAAATGTC................................................................................................................................25140.0711000000
.................................................TGTGAGTAGTAAAATGTCTGCATT..........................................................................................................................24140.0711000000
...........................................TTTCAGTGTGAGTAGTAAAATGTCTGC.............................................................................................................................27140.0711000000
............................................................................................................................................TTCAGGTCAACAGGAGCTAGAGATG..............................25150.0711000000
............................................................................................................................................TTCAGGTCAACAGGAGCTAGAGAT...............................24150.0711000000
....................CACATCTGCAGTAGGAGCTCCACTTT.....................................................................................................................................................26160.0611000000
...........................................................................................................................................TTTCAGGTCAACAGGAGCTAGAGA................................24160.0611000000
.....................ACATCTGCAGTAGGAGCTCCAC........................................................................................................................................................22170.0611000000
......................CATCTGCAGTAGGAGCTCCACTT......................................................................................................................................................23170.0611000000
.............................................................................TGGCAGTAGTCGTGGGTGCTCC................................................................................................22180.0611000000
.......................................................................................CGTGGGTGCTCCAATTTTAGTGT.....................................................................................23190.0511000000
.......................ATCTGCAGTAGGAGCTCCACTTTA....................................................................................................................................................24200.0511000000
........................TCTGCAGTAGGAGCTCCACTTTCAGT.................................................................................................................................................26200.0511000000
...............................TAGGAGCTCCACTTTCAGTG................................................................................................................................................20200.0511000000
........................TCTGCAGTAGGAGCTCCACTTTCT...................................................................................................................................................24200.0511000000
.........................................................................................................................................................................TGGACTTGGGTAAGTGGCTGTTATTT26200.0511000000
.....................................................................................................................................CTTTATTTTCAGGTCAACAGGAGCT.....................................25200.0511000000
.......................................................................................................................................................................ATTGGACTTGGGTAAGTGGCTGT.....23200.0511000000
........................................................................................................................................................................TTGGACTTGGGTAAGTGGCT.......20200.0511000000
.......................ATCTGCAGTAGGAGCTCCACTT......................................................................................................................................................22200.0511000000
..................................................................................................................................TTTCTTTATTTTCAGGTCAACAGGAGC......................................27200.0511000000
........................................................................................................................................................................TTGGACTTGGGTAAGTGGCTGTTAT..25200.0511000000
..........................TGCAGTAGGAGCTCCACTTTCAGG.................................................................................................................................................24200.0511000000
..........................TGCAGTAGGAGCTCCACTTTCAGTGTG..............................................................................................................................................27200.0511000000
.............................................................................................................................................TCAGGTCAACAGGAGCTAGA..................................20200.0511000000
.....................................................................................................................................CTTTATTTTCAGGTCAACAGGAGC......................................24200.0511000000
.......................ATCTGCAGTAGGAGCTCCACTTTCA...................................................................................................................................................25200.0511000000
...................................................................................................................................TTCTTTATTTTCAGGTCAACAGGAGCTA....................................28200.0511000000
.........................................................................................................................................ATTTTCAGGTCAACAGGAGCTAGA..................................24200.0511000000
.........................CTGCAGTAGGAGCTCCACTTTCAGTG................................................................................................................................................26200.0511000000
...................................................................................................................................TTCTTTATTTTCAGGTCAACAGGAGCT.....................................27200.0510000100
............................................................................................................................................TTCAGGTCAACAGGAGCTAGAG.................................22200.0511000000
......................................................................................................................................TTTATTTTCAGGTCAACAGGAGCTAG...................................26200.0511000000
....................................................................................................................................TCTTTATTTTCAGGTCAACAGGAGC......................................25200.0510000100
........................TCTGCAGTAGGAGCTCCACTTTCAGTGTC..............................................................................................................................................29200.0511000000
..........................TGCAGTAGGAGCTCCACTTTCAGTG................................................................................................................................................25200.0511000000
........................................................................................................................................................................TTGGACTTGGGTAAGTGGCTG......21200.0511000000
..........................TGCAGTAGGAGCTCCACTTTCAG..................................................................................................................................................23200.0511000000
..........................................................................................................................TTAATATTTTTCTTTATTTTCAGG.................................................24200.0511000000
...............................TAGGAGCTCCACTTTCAGTGTGAGTA..........................................................................................................................................26200.0511000000

Generated: 05/17/2015 at 10:06 PM